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source: palm/trunk/SCRIPTS/mrun @ 206

Last change on this file since 206 was 206, checked in by raasch, 16 years ago
ocean-atmosphere coupling realized with MPI-1, adjustments in mrun, mbuild, subjob for lcxt4
Property svn:keywords set to `Id Rev`
File size: 151.7 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 206 2008-10-13 14:59:11Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/09 - BjornM - argument "-Y" modified, adjustments for coupled runs
157
158	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
159
160	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
161	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
162	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
163
164	AddFilenames=""
165	additional_conditions=""
166	add_source_path=""
167	afname=""
168	archive_save=true
169	archive_system=none
170	compiler_name=""
171	cond1=""
172	cond2=""
173	config_file=.mrun.config
174	coupled_dist=""
175	coupled_mode="mpi1"
176	cpp_opts=""
177	cpp_options=""
178	cpumax=0
179	cpurest=0
180	delete_temporary_catalog=true
181	do_batch=false
182	do_compile=true
183	do_remote=false
184	do_stagein=true
185	do_stageout=true
186	do_trace=false
187	email_notification=""
188	exclude=""
189	executable=""
190	execution_error=false
191	fimm=false
192	fname=test
193	fromhost=""
194	global_revision=""
195	group_number=none
196	host=""
197	host_file=""
198	hp=""
199	ignore_archive_error=false
200	input_list=""
201	interpreted_config_file=""
202	job_catalog="~/job_queue"
203	job_on_file=""
204	keep_data_from_previous_run=false
205	link_local_input=false
206	link_local_output=false
207	localhost_realname=$(hostname)
208	local_compile=false
209	locat=normal
210	mainprog=""
211	makefile=""
212	mc=$0
213	while [[ $(echo $mc \| grep -c "/") != 0 ]]
214	do
215	mc=`echo $mc \| cut -f2- -d"/"`
216	done
217	module_files=""
218	mrun_script_name=$mc
219	netcdf_inc=""
220	netcdf_lib=""
221	netcdf_support=false
222	node_usage=default
223	numprocs=""
224	numprocs_atmos=0
225	numprocs_ocean=0
226	OOPT=""
227	openmp=false
228	output_list=""
229	package_list=""
230	punkte="..........................................................."
231	queue=none
232	read_from_config=""
233	restart_run=false
234	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
235	if [[ $return_addres = 130.75.105.158 ]]
236	then
237	return_addres=172.20.25.41
238	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
239	fi
240	# if [[ $return_addres = 210.117.65.1 ]]
241	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
242	# then
243	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
244	# fi
245	return_password=""
246	return_username=$LOGNAME
247	remotecall=false
248	remote_username=""
249	run_coupled_model=false
250	run_mode=""
251	scirocco=false
252	store_on_archive_system=true
253	striche=" ----------------------------------------------------------------------------"
254	silent=false
255	source_list=""
256	source_path=SOURCE
257	tasks_per_node=""
258	threads_per_task=1
259	tmpcreate=false
260	tmp_data_catalog=""
261	transfer_problems=false
262	usern=$LOGNAME
263	working_directory=`pwd`
264	TOPT=""
265	XOPT=""
266	zeit=$( date \| cut -c 12-19 )
267
268	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
269	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
270
271	typeset -R30 calltime
272	typeset -L20 spalte1
273	typeset -L40 spalte2
274	typeset -L60 spalte3
275	typeset -L35 string1=`date`
276	typeset -L12 string2=$usern
277	typeset -L12 string3=$localhost_realname
278	typeset -L12 string4
279	typeset -L12 string5
280	typeset -L30 version="MRUN 2.0 Rev$Rev: 206 $"
281
282
283
284	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
285	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
286
287	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
288	# EXPORTIERT WERDEN
289	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
290	export group_number input_list memory numprocs output_list queue run_mode
291
292
293
294	# FEHLERBEHANDLUNG
295	# BEI EXIT:
296	trap 'rm -rf $working_directory/tmp_mrun
297	if [[ $locat != localhost ]]
298	then
299	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
300	# then
301	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
302	#MRUN-calls on $localhost
303	#
304	#date and time user localhost remotehost termination mrun-command
305	#--------------------------------------------------------------------------------------------------------------------
306	#%STATEND%
307	# chmod 666 ${mrun_path}/statistik/mrun_statistik
308	# fi
309	#
310	# # EINTRAG IN DIE STATISTIK-DATEI
311	# string4=$host
312	# string5=$locat
313	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
314	# then
315	# if [[ $do_batch = true ]]
316	# then
317	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
318	# else
319	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
320	# fi
321	# fi
322	echo " " > /dev/null
323	fi
324
325	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
326	then
327
328	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
329	(( i = 0 ))
330	while (( i < iec ))
331	do
332	(( i = i + 1 ))
333	printf "\n *** Execution of ERROR-command:\n"
334	printf " >>> ${err_command[$i]}\n"
335	eval ${err_command[$i]}
336	done
337	if [[ -n $interpreted_config_file ]] then
338	rm -rf $interpreted_config_file
339	fi
340	if [[ -n .mrun_environment ]] then
341	rm -rf .mrun_environment
342	fi
343	if [[ $tmpcreate = true ]]
344	then
345	printf "\n *** Contents of \"$TEMPDIR\":\n"
346	ls -al; cd
347	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
348	fi
349	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
350	then
351	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
352	fi
353	printf "\n\n+++ MRUN killed \n\n"
354	elif [[ $locat != control_c ]]
355	then
356	printf "\n\n --> all actions finished\n\n"
357	printf " Bye, bye $usern !!\n\n"
358	fi' exit
359
360
361	# BEI TERMINAL-BREAK:
362	trap 'rm -rf $working_directory/tmp_mrun
363	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
364	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
365	then
366	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
367	fi
368	printf "\n+++ MRUN killed by \"^C\" \n\n"
369	locat=control_c
370	exit
371	' 2
372
373
374	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
375	# BEEN SET
376	if [[ "$PALM_BIN" = "" ]]
377	then
378	printf "\n +++ environment variable PALM_BIN has not been set"
379	printf "\n please set it to the directory where the PALM scripts are located"
380	locat=palm_bin; exit
381	fi
382	export PATH=$PALM_BIN:$PATH
383
384
385
386	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
387	# FUER FOLGEJOBS BENOETIGT WIRD
388	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
389	do
390	case $option in
391	(a) afname=$OPTARG;;
392	(A) store_on_archive_system=false; mc="$mc -A";;
393	(b) do_batch=true; mc="$mc -b";;
394	(B) delete_temporary_catalog=false; mc="$mc -B";;
395	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
396	(C) restart_run=true; mc="$mc -C";;
397	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
398	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
399	(F) job_on_file="-D"; mc="$mc -F";;
400	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
401	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
402	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
403	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
404	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
405	(I) ignore_archive_error=true; mc="$mc -I";;
406	(k) keep_data_from_previous_run=true; mc="$mc -k";;
407	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
408	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
409	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
410	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
411	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
412	(O) use_openmp=true; mc="$mc -O";;
413	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
414	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
415	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
416	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
417	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
418	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
419	(S) read_from_config=false; mc="$mc -S";;
420	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
421	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
422	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
423	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
424	(v) silent=true; mc="$mc -v";;
425	(x) do_trace=true;set -x; mc="$mc -x";;
426	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
427	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
428	(\?) printf "\n +++ unknown option $OPTARG \n"
429	printf "\n --> type \"$0 ?\" for available options \n"
430	locat=parameter;exit;;
431	esac
432	done
433
434
435	# EVTL. POSITIONSPARAMETER EINLESEN
436	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
437	shift OPTIND-1
438
439
440	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
441	if [[ "$1" = "?" ]]
442	then
443	(printf "\n *** mrun can be called as follows:\n"
444	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
445	printf "\n Description of available options:\n"
446	printf "\n Option Description Default-Value"
447	printf "\n -a base name of input files equiv. -d"
448	printf "\n -A no archiving when using file-attribute fl"
449	printf "\n -b batch-job on local machine ---"
450	printf "\n -B do not delete temporary directory at end ---"
451	printf "\n -c configuration file .mrun.config"
452	printf "\n -d base name of files attached to program test"
453	printf "\n -D preprocessor(cpp)-directives \"\" "
454	printf "\n -F create remote job file only ---"
455	printf "\n -h execution host $localhost_realname"
456	printf "\n -i INPUT control list \"\" "
457	printf "\n -I archiving errors of previous batch-jobs"
458	printf "\n will be ignored"
459	printf "\n -k keep data from previous run"
460	printf "\n -K additional conditions for controling"
461	printf "\n usage of conditional code and"
462	printf "\n env-variables in configuration file \"\" "
463	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
464	printf "\n -M Makefile name Makefile"
465	printf "\n -n node usage (shared/not_shared) depending on -h"
466	printf "\n -o OUTPUT control list \"\" "
467	printf "\n -O use OpenMP ---"
468	printf "\n -p software package list \"\" "
469	printf "\n -q queue \"$queue\" "
470	printf "\n -r run control list (combines -i -o) \"\" "
471	printf "\n -s filenames of routines to be compiled \"\" "
472	printf "\n must end with .f, .f90, .F, or .c !"
473	printf "\n use \"..\" for more than one file and wildcards"
474	printf "\n -s TEST compiles all files with w-permit"
475	printf "\n -S config file interpreted by shellscript ---"
476	printf "\n -t allowed cpu-time in seconds (batch) 0"
477	printf "\n -T tasks per node depending on -h"
478	printf "\n -u username on remote machine \"\" "
479	printf "\n -v no prompt for confirmation ---"
480	printf "\n -x tracing of mrun for debug purposes ---"
481	printf "\n -X # of processors (on parallel machines) 1"
482	printf "\n -Y run coupled model, \"#1 #2\" with"
483	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
484	printf "\n "
485	printf "\n Possible values of positional parameter <modus>:"
486	printf "\n \"?\" - this outline \n\n") \| more
487	exit
488	elif [[ "$1" != "" ]]
489	then
490	printf "\n +++ positional parameter $1 unknown \n"
491	locat=parameter; exit
492	fi
493
494
495
496	# KURZE STARTMELDUNG
497	printf "\n*** $version "
498	printf "\n will be executed. Please wait ..."
499
500
501
502	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
503	if [[ ! -f $config_file ]]
504	then
505	printf "\n\n +++ configuration file: "
506	printf "\n $config_file"
507	printf "\n does not exist"
508	locat=connect; exit
509	fi
510
511
512	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
513	line=""
514	grep "%host_identifier" $config_file > tmp_mrun
515	while read line
516	do
517	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
518	then
519	HOSTNAME=`echo $line \| cut -d" " -s -f2`
520	host_identifier=`echo $line \| cut -d" " -s -f3`
521	if [[ $localhost_realname = $HOSTNAME ]]
522	then
523	localhost=$host_identifier
524	break
525	fi
526	fi
527	done < tmp_mrun
528
529	if [[ "$localhost" = "" ]]
530	then
531	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
532	printf "\n for local host \"$localhost_realname\"."
533	printf "\n Please add line"
534	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
535	printf "\n to the configuration file."
536	locat=localhost; exit
537	fi
538
539
540	# HOSTSPEZIFISCHE VARIABLEN SETZEN
541	case $localhost_realname in
542	(breg-en0\|berni-en0) archive_system=tivoli;;
543	(cs*) archive_system=ut;;
544	(fimm.bccs.uib.no) fimm=true;;
545	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
546	(hreg-en0\|hanni-en0) archive_system=tivoli;;
547	(scirocco) scirocco=true;;
548	esac
549
550
551
552	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
553	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
554	[[ "$afname" = "" ]] && afname=$fname
555
556
557	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
558	if [[ "$run_mode" != "" ]]
559	then
560	input_list="$input_list $run_mode"
561	output_list="$output_list $run_mode"
562	fi
563
564
565	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
566	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
567	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
568	# STARTET)
569	if [[ "$fromhost" = "" ]]
570	then
571	fromhost=$localhost
572	fi
573
574
575	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
576	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
577	then
578	source_list=TEST
579	local_compile=true
580	host=$localhost
581	fi
582
583
584	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
585	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
586	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
587	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
588	if [[ -n $host && "$host" != $localhost ]]
589	then
590	do_batch=true
591	do_remote=true
592	case $host in
593	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
594	(*) printf "\n"
595	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
596	printf "\n is not available"
597	locat=nqs; (( iec = 0 )); exit;;
598	esac
599	else
600	host=$localhost
601	fi
602
603
604	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
605	if [[ -n $additional_conditions ]]
606	then
607	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
608	cond1=`echo $additional_conditions \| cut -d" " -f1`
609	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
610	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
611	if [[ -n $dummy ]]
612	then
613	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
614	locat=options; exit
615	fi
616	fi
617
618
619	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
620	if [[ $run_coupled_model = true ]]
621	then
622
623	if [[ -n $coupled_dist ]]
624	then
625
626	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
627	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
628
629	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
630	then
631
632	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
633	printf "\n PEs (total) : $numprocs"
634	printf "\n PEs (atmosphere): $numprocs_atmos"
635	printf "\n PEs (ocean) : $numprocs_ocean"
636	locat=coupling; exit
637
638	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
639	# THIS SHOULD BE REMOVED IN FUTURE
640	elif (( $numprocs_ocean != $numprocs_atmos ))
641	then
642
643	printf "\n +++ currently only 1:1 topologies are supported"
644	printf "\n PEs (total) : $numprocs"
645	printf "\n PEs (atmosphere): $numprocs_atmos"
646	printf "\n PEs (ocean) : $numprocs_ocean"
647	(( numprocs_atmos = $numprocs / 2 ))
648	(( numprocs_ocean = $numprocs / 2 ))
649	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
650
651	fi
652
653	else
654
655	(( numprocs_ocean = $numprocs / 2 ))
656	(( numprocs_atmos = $numprocs / 2 ))
657
658	fi
659	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
660
661	# GET coupled_mode FROM THE CONFIG FILE
662	line=""
663	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
664	while read line
665	do
666	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
667	then
668	coupled_mode="mpi2"
669	fi
670	done < tmp_mrun
671
672	fi
673
674
675	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
676	# ARCHIVIERUNG FEHLGESCHLAGEN IST
677	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
678	then
679	if [[ $ignore_archive_error = false ]]
680	then
681	printf "\n +++ data archiving of previous run failed"
682	printf "\n see directory \~/job_queue on remote machine"
683	locat=archive; exit
684	else
685	printf "\n +++ warning: data archiving in a previous run failed"
686	printf "\n MRUN continues, trying to get backup copy"
687	fi
688	fi
689
690
691
692	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
693	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
694	if [[ "$read_from_config" = false ]]
695	then
696
697	[[ $silent = false ]] && printf "\n Reading the configuration file... "
698	while read zeile
699	do
700	[[ $silent = false ]] && printf "."
701
702
703	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
704	# ERSETZEN
705	eval zeile=\"$zeile\"
706
707
708	# INTERPRETATION DER ZEILE
709	if [[ "$(echo $zeile)" = "" ]]
710	then
711	# LEERZEILE, KEINE AKTION
712	continue
713
714	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
715	then
716
717	# ZEILE IST KOMMENTARZEILE
718	true
719
720	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
721	then
722
723	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
724	zeile=$(echo $zeile \| cut -c2-)
725	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
726	var=`echo $zeile \| cut -d" " -f1`
727	value=`echo $zeile \| cut -d" " -s -f2`
728	for_host=`echo $zeile \| cut -d" " -s -f3`
729	for_cond1=`echo $zeile \| cut -d" " -s -f4`
730	for_cond2=`echo $zeile \| cut -d" " -s -f5`
731
732	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
733	then
734
735	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
736	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
737	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
738
739
740	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
741	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
742	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
743	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
744	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
745	# KONFIGURATIONSDATEI
746	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
747	then
748	eval $var=\$value
749
750	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
751	if [[ $do_trace = true ]]
752	then
753	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
754	fi
755	fi
756
757	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
758	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
759	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
760	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
761	if [[ $var = host ]]
762	then
763	if [[ -n $host && "$host" != $localhost ]]
764	then
765	do_batch=true
766	do_remote=true
767	case $host in
768	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
769	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
770	printf "\n is not available"
771	locat=nqs; exit;;
772	esac
773	else
774	host=$localhost
775	fi
776	fi
777
778	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
779	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
780	# DEN PROGRAMMEN BENOETIGT WERDEN
781	export $var
782	fi
783
784
785
786
787	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
788	then
789
790	# ZEILE DEFINIERT ERROR-KOMMANDO
791	(( iec = iec + 1 ))
792	zeile=$(echo $zeile \| cut -c4-)
793	err_command[$iec]="$zeile"
794
795	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
796	then
797
798	# ZEILE DEFINIERT INPUT-KOMMANDO
799	(( iic = iic + 1 ))
800	zeile=$(echo $zeile \| cut -c4-)
801	in_command[$iic]="$zeile"
802
803	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
804	then
805
806	# ZEILE DEFINIERT OUTPUT-KOMMANDO
807	(( ioc = ioc + 1 ))
808	zeile=$(echo $zeile \| cut -c4-)
809	out_command[$ioc]="$zeile"
810
811	else
812
813	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
814	# s2a: in/out - Feld
815	# s2b: loc - Feld (optional)
816	# s2c: tr/ar - Feld (optional)
817	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
818	s1=`echo $zeile \| cut -d" " -f1`
819	s2=`echo $zeile \| cut -d" " -s -f2`
820	s2a=$(echo $s2 \| cut -d":" -f1)
821	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
822	then
823	s2b=""
824	s2c=""
825	else
826	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
827	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
828	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
829	fi
830	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
831	s3=`echo $zeile \| cut -d" " -f3`
832	s4=`echo $zeile \| cut -d" " -s -f4`
833	s5=`echo $zeile \| cut -d" " -s -f5`
834	s6=`echo $zeile \| cut -d" " -s -f6`
835
836
837	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
838	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
839	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
840	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
841	# HANDEN SEIN MUSS (D.H. s2b = loc)
842	IFSALT="$IFS"; IFS="$IFS:"
843	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
844	then
845	found=false
846	for actual in $input_list
847	do
848	for formal in $s3
849	do
850	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
851	done
852	done
853	if [[ $found = true ]]
854	then
855	(( iin = iin + 1 ))
856	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
857	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
858	extin[$iin]=$s6
859	fi
860	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
861	then
862	found=false
863	for actual in $output_list
864	do
865	for formal in $s3
866	do
867	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
868	done
869	done
870	if [[ $found = true ]]
871	then
872	(( iout = iout + 1 ))
873	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
874	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
875	fi
876	elif [[ "$s2a" != in && "$s2a" != out ]]
877	then
878	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
879	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
880	locat=connect; exit
881	fi
882	IFS="$IFSALT"
883	fi
884	done < $config_file
885
886	else
887
888
889	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
890	[[ $silent = false ]] && printf "..."
891	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
892	export interpreted_config_file=.icf.$RANDOM
893
894
895
896	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
897	# VERFUEGUNG STELLEN
898	cat > .mrun_environment << %%END%%
899	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
900	config_file = '$config_file', do_remote = '$do_remote',
901	do_trace = '$do_trace', host = '$host',
902	input_list = '$input_list', icf = '$interpreted_config_file',
903	localhost = '$localhost', output_list = '$output_list' /
904
905	%%END%%
906
907	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
908	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
909	mrun_memory=$memory
910	mrun_group_number=$group_number
911	mrun_cpumax=$cpumax
912	mrun_numprocs=$numprocs
913
914	if [[ $localhost_realname = "gate" ]]
915	then
916	interpret_config_gate.x
917	else
918	interpret_config.x
919	fi
920	rm .mrun_environment
921
922
923	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
924	chmod u+x $interpreted_config_file
925	export PATH=$PATH:.
926	. $interpreted_config_file
927	rm $interpreted_config_file
928
929
930	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
931	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
932	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
933	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
934	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
935
936	fi
937
938
939	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
940	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
941	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
942	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
943	if [[ "$SOURCES_COMPLETE" = "" ]]
944	then
945
946	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
947	# VEREINBART WURDE
948	source_path=""
949	line=""
950	grep "%source_path" $config_file > tmp_mrun
951	while read line
952	do
953	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
954	then
955	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
956	then
957	global_source_path=`echo $line \| cut -d" " -f2`
958	fi
959	fi
960	done < tmp_mrun
961
962	line=""
963	found=false
964	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
965	while read line
966	do
967	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
968	then
969	if [[ $found = true ]]
970	then
971	printf "\n\n +++ more than one source path found in configuration file"
972	printf "\n for local host \"$localhost\" "
973	locat=source_path; exit
974	fi
975	source_path=`echo $line \| cut -d" " -f2`
976	found=true
977	fi
978	done < tmp_mrun
979	rm tmp_mrun
980
981	if [[ "$source_path" = "" ]]
982	then
983	if [[ "$global_source_path" != "" ]]
984	then
985	source_path=$global_source_path
986	else
987	printf "\n\n +++ no source path found in configuration file"
988	printf "\n for local host \"$localhost\" "
989	locat=source_path; exit
990	fi
991	fi
992	eval source_path=$source_path
993
994	if [[ ! -d $source_path ]]
995	then
996	printf "\n\n +++ source path \"$source_path\" on local host"
997	printf "\n \"$localhost\" does not exist"
998	locat=source_path; exit
999	fi
1000
1001	fi
1002
1003
1004	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1005	# DURCH OPTION -G MITGETEILT)
1006	if [[ "$global_revision" = "" ]]
1007	then
1008	global_revision=`svnversion $source_path 2>/dev/null`
1009	global_revision="Rev: $global_revision"
1010	fi
1011
1012
1013	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1014	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1015	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1016	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1017	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1018	if [[ -n $host && "$host" != $localhost ]]
1019	then
1020	do_batch=true
1021	do_remote=true
1022	case $host in
1023	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
1024	(*) printf "\n"
1025	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1026	printf "\n is not available"
1027	locat=nqs; (( iec = 0 )); exit;;
1028	esac
1029	else
1030	host=$localhost
1031	fi
1032
1033
1034	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1035	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1036	then
1037
1038	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1039	if [[ ! -n $numprocs ]]
1040	then
1041	printf "\n"
1042	printf "\n +++ option \"-K parallel\" requires additional specification"
1043	printf "\n of the number of processors to be used by"
1044	printf "\n mrun-option \"-X\" or by environment-variable"
1045	printf "\n \"numprocs\" in the configuration file"
1046	locat=numprocs; (( iec = 0 )); exit
1047	fi
1048
1049	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1050	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1051	# GESAMTPROZESSORANZAHL IST
1052	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1053	then
1054	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1055	(( ival = $tasks_per_node ))
1056	(( pes = numprocs ))
1057	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1058	# then
1059	# (( pes = pes - 1 ))
1060	# fi
1061	(( ii = pes / ival ))
1062	if (( pes - ii * ival > 0 ))
1063	then
1064	printf "\n"
1065	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1066	printf "\n divisor of the total number of processors (option \"-X\")"
1067	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1068	locat=tasks_per_node; (( iec = 0 )); exit
1069	fi
1070	fi
1071
1072	# IBMY HAT NUR EINEN KNOTEN
1073	if [[ $host = ibmy ]]
1074	then
1075	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1076	then
1077	printf "\n"
1078	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1079	printf "\n total number of processors (option \"-X\")"
1080	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1081	locat=tasks_per_node; (( iec = 0 )); exit
1082	fi
1083	fi
1084
1085	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1086	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1087	if [[ $use_openmp = true ]]
1088	then
1089	threads_per_task=$tasks_per_node
1090	tasks_per_node=1
1091	fi
1092	OOPT="-O $threads_per_task"
1093	TOPT="-T $tasks_per_node"
1094
1095	# GESAMTZAHL DER KNOTEN BESTIMMEN
1096	if [[ "$tasks_per_node" != "" ]]
1097	then
1098	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1099	fi
1100
1101	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1102	# SETZEN
1103	if [[ $node_usage = default ]]
1104	then
1105	if [[ $host = ibms ]]
1106	then
1107	node_usage=shared
1108	elif [[ $host = lctit ]]
1109	then
1110	node_usage=sla3
1111	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1112	then
1113	node_usage=singlejob
1114	else
1115	node_usage=not_shared
1116	fi
1117	fi
1118
1119	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1120	then
1121	printf "\n"
1122	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1123	printf "\n \"shared\" or \"not_shared\""
1124	locat=tasks_per_node; (( iec = 0 )); exit
1125	fi
1126
1127	fi
1128
1129	# PRUEFEN, OB HOSTFILE EXISTIERT
1130	if [[ -n $hostfile ]]
1131	then
1132	if [[ ! -f $hostfile ]]
1133	then
1134	printf "\n"
1135	printf "\n +++ hostfile \"$hostfile\" does not exist"
1136	locat=hostfile; exit
1137	fi
1138	fi
1139
1140	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1141	if [[ $host = ibmy && $do_remote = false ]]
1142	then
1143	if [[ ! -f $HOME/.rhosts ]]
1144	then
1145	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1146	printf "\n\n *** file:"
1147	printf "\n $HOME/.rhosts"
1148	printf "\n was created\n"
1149	fi
1150	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1151	then
1152	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1153	printf "\n\n *** file:"
1154	printf "\n $HOME/.rhosts"
1155	printf "\n was extended by the name of the current host\n"
1156	fi
1157	fi
1158
1159
1160
1161	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1162	if [[ $queue = none ]]
1163	then
1164	case $host in
1165	(ibmb) if [[ $node_usage = shared ]]
1166	then
1167	queue=cshare
1168	else
1169	queue=csolo
1170	fi;;
1171	(ibmh) if [[ $node_usage = shared ]]
1172	then
1173	queue=cshare
1174	else
1175	queue=csolo
1176	fi;;
1177	(ibmy) queue=parallel;;
1178	(lcsgib) queue=bigq;;
1179	(lcsgih) queue=bigq;;
1180	(lctit) queue=sla3;;
1181	(nech) queue=none;;
1182	(neck) queue=P;;
1183	(unics) queue=unics;;
1184	esac
1185	fi
1186
1187
1188	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1189	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1190	# ERMITTELN
1191	(( i = 0 ))
1192	while (( i < iin ))
1193	do
1194	(( i = i + 1 ))
1195	(( maxcycle = 0 ))
1196
1197	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1198	if [[ "${actionin[$i]}" = di ]]
1199	then
1200	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1201	# REM-MASCHINE AUSWERTEN
1202	eval filename=${pathin[$i]}/${endin[$i]}
1203	else
1204	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1205	# REM-MASCHINE AUSWERTEN
1206	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1207	fi
1208
1209	# PRUEFEN AUF VORHANDENSEIN
1210	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1211	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1212	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1213	then
1214	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1215	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1216	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1217	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1218	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1219	if [[ "${transin[$i]}" != "locopt" ]]
1220	then
1221	printf "\n\n +++ INPUT-file: "
1222	if [[ "${extin[$i]}" = "" ]]
1223	then
1224	printf "\n $filename"
1225	else
1226	printf "\n $filename.${extin[$i]}"
1227	fi
1228	printf "\n does not exist\n"
1229	locat=input; exit
1230	else
1231	transin[$i]="unavailable"
1232	fi
1233	else
1234
1235	# ZYKLUSNUMMER FESTSTELLEN
1236	ls -1 -d $filename > filelist 2>/dev/null
1237	ls -1 -d $filename.* >> filelist 2>/dev/null
1238	while read zeile
1239	do
1240	cycle=$(print $zeile \| cut -f2 -d".")
1241	if [[ "$cycle" = "$zeile" ]]
1242	then
1243	(( icycle = 0 ))
1244	elif [[ "$cycle" = "${extin[$i]}" ]]
1245	then
1246	(( icycle = 0 ))
1247	else
1248	(( icycle = $cycle ))
1249	fi
1250	if (( icycle > maxcycle ))
1251	then
1252	(( maxcycle = icycle ))
1253	file_to_be_used=$zeile
1254	fi
1255	done <filelist
1256	rm filelist
1257
1258	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1259	if (( maxcycle > 0 ))
1260	then
1261	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1262	then
1263	filename=${filename}.$maxcycle.${extin[$i]}
1264	else
1265	filename=${filename}.$maxcycle
1266	fi
1267	else
1268	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1269	then
1270	filename=${filename}.${extin[$i]}
1271	fi
1272	fi
1273
1274	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1275	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1276	absnamein[$i]=$filename
1277	if (( maxcycle > 0 ))
1278	then
1279	if [[ "${actionin[$i]}" = di ]]
1280	then
1281	frelin[$i]=${endin[$i]}.$maxcycle
1282	else
1283	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1284	fi
1285	else
1286	if [[ "${actionin[$i]}" = di ]]
1287	then
1288	frelin[$i]=${endin[$i]}
1289	else
1290	frelin[$i]=${afname}${endin[$i]}
1291	fi
1292	fi
1293
1294	fi
1295	done
1296
1297
1298	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1299	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1300	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1301	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1302	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1303	(( i = 0 ))
1304	while (( i < iout ))
1305	do
1306	(( i = i + 1 ))
1307	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1308	then
1309	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1310	then
1311	actionout[$i]=""
1312	elif [[ "${actionout[$i]}" = tra ]]
1313	then
1314	actionout[$i]=a
1315	fi
1316	(( maxcycle = 0 ))
1317	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1318	eval catalogname=${pathout[$i]}
1319	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1320	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1321	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1322	then
1323
1324	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1325	if cat /dev/null > $filename
1326	then
1327	rm $filename
1328	else
1329
1330	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1331	if [[ ! -d $catalogname ]]
1332	then
1333	if mkdir -p $catalogname
1334	then
1335	printf "\n\n *** directory:"
1336	printf "\n $catalogname"
1337	printf "\n was created\n"
1338	else
1339	printf "\n\n +++ OUTPUT-file:"
1340	printf "\n $filename"
1341	printf "\n cannot be created, because directory does not exist"
1342	printf "\n and cannot be created either"
1343	printf "\n"
1344	locat=output ; exit
1345	fi 2>/dev/null
1346	else
1347	printf "\n\n +++ OUTPUT-file:"
1348	printf "\n $filename"
1349	printf "\n cannot be created, although directory exists"
1350	printf "\n"
1351	locat=output ; exit
1352	fi
1353	fi 2>/dev/null
1354	else
1355
1356	# ZYKLUSNUMMER FESTSTELLEN
1357	ls -1 -d $filename > filelist 2>/dev/null
1358	ls -1 -d $filename.* >> filelist 2>/dev/null
1359	while read zeile
1360	do
1361	cycle=$(print $zeile \| cut -f2 -d".")
1362	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1363	then
1364	(( icycle = 1 ))
1365	else
1366	(( icycle = $cycle + 1 ))
1367	fi
1368	if (( icycle > maxcycle ))
1369	then
1370	(( maxcycle = icycle ))
1371	fi
1372	done <filelist
1373	rm filelist
1374	fi
1375
1376	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1377	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1378	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1379	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1380	if [[ "${actionout[$i]}" != a ]]
1381	then
1382	if (( maxcycle > 0 ))
1383	then
1384	filename=${filename}.$maxcycle
1385	if cat /dev/null > $filename
1386	then
1387	rm $filename
1388	else
1389	printf "\n +++ OUTPUT-file:"
1390	printf "\n $filename"
1391	printf "\n cannot be created"
1392	locat=output ; exit
1393	fi
1394	fi
1395	else
1396	(( maxcycle = maxcycle - 1 ))
1397	if (( maxcycle > 0 ))
1398	then
1399	filename=${filename}.$maxcycle
1400	fi
1401	fi
1402
1403	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1404	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1405	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1406	pathout[$i]=$filename
1407	if (( maxcycle > 0 ))
1408	then
1409	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1410	else
1411	frelout[$i]=${fname}${endout[$i]}
1412	fi
1413
1414	fi
1415	done
1416
1417
1418	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1419	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1420	then
1421	if [[ "$dvrp_inc" = "" ]]
1422	then
1423	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1424	printf "\n This is required for the dvrp_graphics package.\n"
1425	locat=dvrp; exit
1426	fi
1427	if [[ "$dvrp_lib" = "" ]]
1428	then
1429	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1430	printf "\n This is required for the dvrp_graphics package.\n"
1431	locat=dvrp; exit
1432	fi
1433	fi
1434
1435
1436	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1437	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1438	# UEBERSETZT ZU WERDEN)
1439	if [[ "$mainprog" = "" && "$executable" = "" ]]
1440	then
1441	printf "\n +++ neither main program nor executable defined"
1442	locat=source; exit
1443	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1444	then
1445	printf "\n +++ main program as well as executable defined"
1446	locat=source; exit
1447	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1448	then
1449	do_compile=false
1450	fi
1451
1452
1453	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1454	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1455	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1456	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1457	then
1458	rm -rf SOURCES_FOR_RUN_$fname
1459	mkdir SOURCES_FOR_RUN_$fname
1460	fi
1461
1462
1463	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1464	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1465	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1466	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1467	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1468	then
1469
1470	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1471	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1472
1473
1474	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1475	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1476	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1477	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1478	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1479	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1480	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1481	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1482	# GESAMMELT
1483	if [[ "$source_list" = WRITE_PERMIT ]]
1484	then
1485
1486	source_list=""
1487	cd $source_path
1488
1489
1490	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1491	Names=$(ls -1 *.f90 2>&1)
1492	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1493	Names=$(ls -1 *.F90 2>&1)
1494	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1495	Names=$(ls -1 *.F 2>&1)
1496	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1497	Names=$(ls -1 *.f 2>&1)
1498	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1499	Names=$(ls -1 *.c 2>&1)
1500	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1501
1502
1503	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1504	for dateiname in $Filenames
1505	do
1506	if [[ -w $dateiname ]]
1507	then
1508	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1509	then
1510	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1511	source_list=$source_list"$dateiname "
1512	fi
1513	fi
1514	done
1515
1516	cd - > /dev/null
1517
1518
1519	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1520	then
1521
1522	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1523	source_list=""
1524	cd $source_path
1525
1526
1527	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1528	if [[ ! -d .svn ]]
1529	then
1530	printf "\n\n +++ source directory"
1531	printf "\n \"$source_path\" "
1532	printf "\n is not under control of \"subversion\"."
1533	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1534	fi
1535
1536
1537	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1538	Filenames=""
1539	svn status > tmp_mrun
1540	while read line
1541	do
1542	firstc=`echo $line \| cut -c1`
1543	if [[ $firstc = M \|\| $firstc = "?" ]]
1544	then
1545	Name=`echo "$line" \| cut -c8-`
1546	extension=`echo $Name \| cut -d. -f2`
1547	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1548	then
1549	Filenames="$Filenames "$Name
1550	fi
1551	fi
1552	done < tmp_mrun
1553
1554
1555	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1556	for dateiname in $Filenames
1557	do
1558	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1559	source_list=$source_list"$dateiname "
1560	done
1561
1562	cd - > /dev/null
1563
1564
1565	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1566	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1567	# VORHANDEN
1568	elif [[ "$source_list" != "" && $restart_run != true ]]
1569	then
1570
1571	cd $source_path
1572
1573	for filename in $source_list
1574	do
1575
1576	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1577	if [[ $(print $filename \| grep -c "/") != 0 ]]
1578	then
1579	printf "\n +++ source code file: $filename"
1580	printf "\n must not contain (\"/\") "
1581	locat=source; exit
1582	fi
1583
1584	if [[ ! -f $filename ]]
1585	then
1586	printf "\n +++ source code file: $filename"
1587	printf "\n does not exist"
1588	locat=source; exit
1589	else
1590	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1591	fi
1592
1593	done
1594
1595	cd - > /dev/null
1596
1597	fi
1598
1599
1600	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1601	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1602	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1603	if [[ $restart_run != true ]]
1604	then
1605
1606	if [[ ! -f "$source_path/$mainprog" ]]
1607	then
1608	printf "\n\n +++ main program: $mainprog"
1609	printf "\n does not exist in source directory"
1610	printf "\n \"$source_path\"\n"
1611	locat=source; exit
1612	else
1613	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1614	then
1615	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1616	source_list=${mainprog}" $source_list"
1617	fi
1618	fi
1619	fi
1620
1621
1622	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1623	if [[ $restart_run != true && "$add_source_path" != "" ]]
1624	then
1625
1626	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1627	if [[ ! -d $add_source_path ]]
1628	then
1629	printf "\n\n +++ WARNING: additional source code directory"
1630	printf "\n \"$add_source_path\" "
1631	printf "\n does not exist or is not a directory."
1632	printf "\n No source code will be used from this directory!\n"
1633	add_source_path=""
1634	sleep 3
1635	else
1636
1637	cd $add_source_path
1638
1639	Names=$(ls -1 *.f90 2>&1)
1640	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1641	Names=$(ls -1 *.F90 2>&1)
1642	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1643	Names=$(ls -1 *.F 2>&1)
1644	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1645	Names=$(ls -1 *.f 2>&1)
1646	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1647	Names=$(ls -1 *.c 2>&1)
1648	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1649
1650	cd - > /dev/null
1651	cd SOURCES_FOR_RUN_$fname
1652
1653	for dateiname in $AddFilenames
1654	do
1655	if [[ -f $dateiname ]]
1656	then
1657	printf "\n +++ source code file \"$dateiname\" found in additional"
1658	printf "\n source code directory \"$add_source_path\" "
1659	printf "\n as well as in directory \"$source_path\"."
1660	locat=source; exit
1661	fi
1662
1663	cp $add_source_path/$dateiname .
1664	source_list="$source_list $dateiname"
1665
1666	# Default User-Interface von der Liste entfernen, falls Datei
1667	# ein User-Interface enthaelt
1668	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1669	then
1670	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1671	then
1672	rm -rf user_interface.f90
1673	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1674	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1675	printf "\n since a user-interface is found in file"
1676	printf "\n \"$add_source_path/$dateiname\" \n"
1677	sleep 3
1678	else
1679	printf "\n\n *** user-interface file \"$dateiname\" "
1680	printf "\n added to the files to be translated \n"
1681	sleep 3
1682	fi
1683	fi
1684	done
1685
1686	cd - > /dev/null
1687	fi
1688	fi
1689
1690
1691	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1692	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1693	if [[ $restart_run != true && -n $package_list ]]
1694	then
1695
1696	cd $source_path
1697
1698	for package in $package_list
1699	do
1700
1701	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1702
1703	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1704	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1705	# LIEFERT
1706	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1707
1708
1709	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1710	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1711	for source_list_name in $package_source_list
1712	do
1713	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1714	then
1715
1716	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1717	ending=`echo $source_list_name \| cut -f2 -d.`
1718	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1719	then
1720	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1721	source_list="$source_list $source_list_name"
1722	fi
1723	fi
1724	done
1725	done
1726
1727	cd - > /dev/null
1728	fi
1729
1730
1731	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1732	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1733	if [[ "$restart_run" != true ]]
1734	then
1735	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1736	if [[ ! -f $makefile ]]
1737	then
1738	printf "\n +++ file \"$makefile\" does not exist"
1739	locat=make; exit
1740	else
1741	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1742	fi
1743	fi
1744
1745	fi # do_compile=true
1746
1747
1748	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1749	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1750	if [[ $do_compile = true ]]
1751	then
1752
1753	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1754	# ZUSAMMENSETZEN
1755	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1756	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1757	then
1758	cpp_options="${cpp_options},-D__ibm=__ibm"
1759	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1760	then
1761	cpp_options="$cpp_options -D__nec"
1762	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1763	then
1764	cpp_options="$cpp_options -D__lc"
1765	else
1766	cpp_options="$cpp_options -D__$localhost"
1767	fi
1768
1769	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1770	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1771	then
1772	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1773	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1774	else
1775	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1776	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1777	fi
1778
1779	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1780	if [[ -n $package_list ]]
1781	then
1782	for package in $package_list
1783	do
1784	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1785	then
1786	if [[ $package != "dvrp_graphics+1PE" ]]
1787	then
1788	cpp_options="${cpp_options},-D__$package=__$package"
1789	else
1790	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1791	export use_seperate_pe_for_dvrp_output=true
1792	fi
1793	else
1794	if [[ $package != "dvrp_graphics+1PE" ]]
1795	then
1796	cpp_options="$cpp_options -D__$package"
1797	else
1798	cpp_options="$cpp_options -D__dvrp_graphics"
1799	export use_seperate_pe_for_dvrp_output=true
1800	fi
1801	fi
1802	done
1803	fi
1804
1805	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1806	if [[ -n $cpp_opts ]]
1807	then
1808	for popts in $cpp_opts
1809	do
1810	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1811	then
1812	cpp_options="${cpp_options},-D__$popts=__$popts"
1813	else
1814	cpp_options="$cpp_options -D__$popts"
1815	fi
1816	done
1817	fi
1818
1819	else
1820
1821
1822	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1823	if [[ $do_remote = false ]]
1824	then
1825	if [[ ! -f $executable ]]
1826	then
1827	printf "\n +++ executable file: $executable"
1828	printf "\n does not exist"
1829	locat=executable; exit
1830	fi
1831	fi
1832	fi
1833
1834
1835	# JOBMODUS FESTSTELLEN
1836	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1837	then
1838	jobmo=BATCH
1839	else
1840	jobmo=INTERACTIVE
1841	fi
1842
1843
1844	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1845	# DURCH BENUTZER ANDERWEITIG VEREINBART
1846	if [[ "$compiler_name" = "" ]]
1847	then
1848
1849	printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\""
1850	locat=compiler_name; exit
1851
1852	fi
1853
1854
1855	# COMPILER AUF NECK UEBERSCHREIBEN
1856	[[ $localhost = neck ]] && compiler_name=mpif90
1857
1858
1859
1860	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1861	kennung=$RANDOM
1862	if [[ "$tmp_user_catalog" = "" ]]
1863	then
1864	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1865	then
1866	tmp_user_catalog=$TMPDIR
1867	elif [[ $localhost = nech ]]
1868	then
1869	tmp_user_catalog=$WRKSHR
1870	else
1871	tmp_user_catalog=/tmp
1872	fi
1873	fi
1874	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1875
1876
1877	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1878	# BESTIMMEN
1879	if [[ "$tmp_data_catalog" = "" ]]
1880	then
1881	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1882	then
1883	tmp_data_catalog=$WORK/mrun_restart_data
1884	elif [[ $localhost = nech ]]
1885	then
1886	tmp_data_catalog=$WRKSHR/mrun_restart_data
1887	else
1888	tmp_data_catalog=/tmp/mrun_restart_data
1889	fi
1890	fi
1891
1892
1893	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1894	# ERSETZEN
1895	if [[ $do_remote = false && $do_compile = true ]]
1896	then
1897	eval fopts=\"$fopts\"
1898	eval lopts=\"$lopts\"
1899	fi
1900
1901
1902
1903	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1904	fopts="$fopts $netcdf_inc $dvrp_inc"
1905	lopts="$lopts $netcdf_lib $dvrp_lib"
1906	ROPTS="$ropts"
1907	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1908	then
1909	XOPT="-X $numprocs"
1910	fi
1911
1912
1913
1914	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1915	# GRAMM BENOETIGT
1916	done=false
1917	while [[ $done = false ]]
1918	do
1919	cputime=$cpumax
1920	if (( $cputime == 0 ))
1921	then
1922	printf "\n +++ cpu-time is undefined"
1923	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1924	printf "\n >>> "
1925	read cputime 1>/dev/null 2>&1
1926	else
1927	done=true
1928	fi
1929	cpumax=$cputime
1930	done
1931
1932	(( minuten = cputime / 60 ))
1933	(( sekunden = cputime - minuten * 60 ))
1934
1935
1936	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1937	if [[ $do_batch = true ]]
1938	then
1939	done=false
1940	while [[ $done = false ]]
1941	do
1942	if (( memory == 0 ))
1943	then
1944	printf "\n +++ memory demand is undefined"
1945	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1946	printf "\n >>> "
1947	read memory 1>/dev/null 2>&1
1948	else
1949	done=true
1950	fi
1951	done
1952	fi
1953
1954
1955	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1956	if [[ $do_remote = true && -z $remote_username ]]
1957	then
1958	while [[ -z $remote_username ]]
1959	do
1960	printf "\n +++ username on remote host \"$host\" is undefined"
1961	printf "\n >>> Please type username:"
1962	printf "\n >>> "
1963	read remote_username
1964	done
1965	mc="$mc -u$remote_username"
1966	fi
1967
1968	###########################################################################
1969	# HEADER-AUSGABE
1970	###########################################################################
1971
1972
1973	calltime=$(date)
1974	printf "\n"
1975	# [[ $silent = false ]] && clear
1976	printf "#--------------------------------------------------------------# \n"
1977	printf "\| $version$calltime \| \n"
1978	printf "\| \| \n"
1979	spalte1="called on:"; spalte2=$localhost_realname
1980	printf "\| $spalte1$spalte2 \| \n"
1981	if [[ $local_compile = false ]]
1982	then
1983	if [[ $do_remote = true ]]
1984	then
1985	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1986	else
1987	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1988	fi
1989	else
1990	spalte1="compiling test only!"; spalte2=""
1991	fi
1992	printf "\| $spalte1$spalte2 \| \n"
1993	if [[ -n $numprocs ]]
1994	then
1995	spalte1="number of PEs:"; spalte2=$numprocs
1996	printf "\| $spalte1$spalte2 \| \n"
1997	fi
1998	if [[ -n $tasks_per_node ]]
1999	then
2000	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2001	printf "\| $spalte1$spalte2 \| \n"
2002	fi
2003	if [[ $threads_per_task != 1 ]]
2004	then
2005	spalte1="threads per task:"; spalte2="$threads_per_task"
2006	printf "\| $spalte1$spalte2 \| \n"
2007	fi
2008	printf "\| \| \n"
2009	if [[ $do_compile = true ]]
2010	then
2011	spalte1=cpp-directives:; spalte2=$cpp_options
2012	printf "\| $spalte1$spalte2 \| \n"
2013	zeile=$(echo "$cpp_options" \| cut -c41-)
2014	while [[ "$zeile" != "" ]]
2015	do
2016	spalte1=""
2017	spalte2=$zeile
2018	printf "\| $spalte1$spalte2 \| \n"
2019	zeile=$(echo "$zeile" \| cut -c41-)
2020	done
2021
2022	spalte1=compiler-options:; spalte2="$fopts"
2023	printf "\| $spalte1$spalte2 \| \n"
2024	zeile=$(echo "$fopts" \| cut -c41-)
2025	while [[ "$zeile" != "" ]]
2026	do
2027	spalte1=""
2028	spalte2=$zeile
2029	printf "\| $spalte1$spalte2 \| \n"
2030	zeile=$(echo "$zeile" \| cut -c41-)
2031	done
2032
2033	spalte1=linker-options:; spalte2=$lopts
2034	printf "\| $spalte1$spalte2 \| \n"
2035	zeile=$(echo "$lopts" \| cut -c41-)
2036	while [[ "$zeile" != "" ]]
2037	do
2038	spalte1=""
2039	spalte2=$zeile
2040	printf "\| $spalte1$spalte2 \| \n"
2041	zeile=$(echo "$zeile" \| cut -c41-)
2042	done
2043
2044	spalte1="main program":; spalte2=$mainprog
2045	printf "\| $spalte1$spalte2 \| \n"
2046	else
2047	spalte1=executable:; spalte2=$executable
2048	printf "\| $spalte1$spalte2 \| \n"
2049	fi
2050	printf "\| \| \n"
2051	spalte1="base name of files":; spalte2=$fname
2052	printf "\| $spalte1$spalte2 \| \n"
2053	if [[ $fname != $afname ]]
2054	then
2055	spalte1="base name of input files":; spalte2=$afname
2056	printf "\| $spalte1$spalte2 \| \n"
2057	fi
2058	spalte1="INPUT control list":; spalte2=$input_list
2059	printf "\| $spalte1$spalte2 \| \n"
2060	spalte1="OUTPUT control list":; spalte2=$output_list
2061	printf "\| $spalte1$spalte2 \| \n"
2062
2063	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2064	then
2065	spalte1="memory demand / PE":; spalte2="$memory MB"
2066	printf "\| $spalte1$spalte2 \| \n"
2067	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2068	printf "\| $spalte1$spalte2 \| \n"
2069	fi
2070
2071	if [[ $do_compile = true ]]
2072	then
2073	printf "\| \| \n"
2074	printf "\| Files to be compiled: \| \n"
2075	zeile=$source_list
2076	while [[ "$zeile" != "" ]]
2077	do
2078	spalte3=$zeile
2079	printf "\| $spalte3 \| \n"
2080	zeile=$(echo "$zeile" \| cut -c61-)
2081	done
2082	fi
2083	printf "#--------------------------------------------------------------#"
2084
2085
2086
2087	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2088	if [[ $do_trace = true ]]
2089	then
2090	(( i = 0 ))
2091	while (( i < iin ))
2092	do
2093	(( i = i + 1 ))
2094	if (( i == 1 ))
2095	then
2096	printf "\n\n >>> INPUT-file assignments:\n"
2097	fi
2098	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2099	done
2100	(( i = 0 ))
2101	while (( i < iout ))
2102	do
2103	(( i = i + 1 ))
2104	if (( i == 1 ))
2105	then
2106	printf "\n\n >>> OUTPUT-file assignments:\n"
2107	fi
2108	printf "\n ${localout[$i]} : ${pathout[$i]}"
2109	done
2110	(( i = 0 ))
2111	while (( i < iic ))
2112	do
2113	(( i = i + 1 ))
2114	if (( i == 1 ))
2115	then
2116	printf "\n\n >>> INPUT-commands:\n"
2117	fi
2118	printf "\n ${in_command[$i]}"
2119	done
2120	(( i = 0 ))
2121	while (( i < ioc ))
2122	do
2123	(( i = i + 1 ))
2124	if (( i == 1 ))
2125	then
2126	printf "\n\n >>> OUTPUT-commands:\n"
2127	fi
2128	printf "\n ${out_command[$i]}"
2129	done
2130	fi
2131
2132
2133	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2134	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2135	then
2136	antwort=dummy
2137	printf "\n\n"
2138	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2139	do
2140	printf " >>> everything o.k. (y/n) ? "
2141	read antwort
2142	done
2143	if [[ $antwort = n \|\| $antwort = N ]]
2144	then
2145	locat=user_abort; (( iec = 0 )); exit
2146	fi
2147	if [[ $do_batch = true ]]
2148	then
2149	printf " >>> batch-job will be created and submitted"
2150	else
2151	if [[ $local_compile = false ]]
2152	then
2153	printf " >>> MRUN will now continue to execute on this machine"
2154	else
2155	printf " >>> a test compilation will now be carried out on this machine"
2156	fi
2157	fi
2158	fi
2159
2160
2161
2162
2163	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2164	# CHENDE AKTIONEN DURCHGEFUEHRT
2165	if [[ $do_batch = false ]]
2166	then
2167
2168
2169	# TEMPORAEREN KATALOG ERZEUGEN
2170	mkdir -p $TEMPDIR
2171	chmod go+rx $TEMPDIR
2172	tmpcreate=true
2173
2174
2175	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2176	# TEMPORAERES VERZEICHNIS KOPIEREN
2177	if [[ $do_compile = true ]]
2178	then
2179
2180	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2181	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2182	if [[ $localhost = nech ]]
2183	then
2184	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2185	if mkdir -p $TEMPDIR_COMPILE
2186	then
2187	printf "\n *** \"$TEMPDIR_COMPILE\" "
2188	printf "\n is generated as temporary directory for cross compiling\n"
2189	else
2190	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2191	printf "\n needed for cross compilation failed"
2192	locat=compile
2193	exit
2194	fi
2195	else
2196	TEMPDIR_COMPILE=$TEMPDIR
2197	fi
2198
2199
2200	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2201	line=""
2202	grep "%depository_path" $config_file > tmp_mrun
2203	while read line
2204	do
2205	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2206	then
2207	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2208	then
2209	global_depository_path=`echo $line \| cut -d" " -s -f2`
2210	fi
2211	fi
2212	done < tmp_mrun
2213
2214	line=""
2215	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2216	while read line
2217	do
2218	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2219	then
2220	local_depository_path=`echo $line \| cut -d" " -s -f2`
2221	fi
2222	done < tmp_mrun
2223
2224	if [[ "$local_depository_path" = "" ]]
2225	then
2226	if [[ "$global_depository_path" != "" ]]
2227	then
2228	local_depository_path=$global_depository_path
2229	else
2230	printf "\n\n +++ no depository path found in configuration file"
2231	printf "\n for local host \"$localhost\" "
2232	printf "\n please set \"\%depository_path\" in configuration file\n"
2233	locat=config_file; exit
2234	fi
2235	fi
2236	eval local_depository_path=$local_depository_path
2237
2238	basename=`print $mainprog \| cut -f1 -d"."`
2239	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2240	if [[ ! -f $make_depository ]]
2241	then
2242	printf "\n"
2243	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2244	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2245	else
2246	cp $make_depository $TEMPDIR_COMPILE
2247	cd $TEMPDIR_COMPILE
2248	tar -xf $make_depository > /dev/null 2>&1
2249	cd - > /dev/null
2250	fi
2251
2252	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2253
2254	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2255	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2256	# MAKEFILE EINTRAGEN
2257	cd $TEMPDIR_COMPILE
2258	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2259	if [[ "$interface_file" != "" ]]
2260	then
2261	interface_file=`echo $interface_file \| cut -d"." -f1`
2262	mv Makefile Makefile_old
2263	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2264	fi
2265	cd - > /dev/null
2266	else
2267	cp $executable ${TEMPDIR}/a.out
2268	fi
2269
2270
2271	# WECHSEL IN TEMPORAEREN KATALOG
2272	cd $TEMPDIR
2273	printf "\n *** changed to temporary directory: $TEMPDIR"
2274
2275
2276	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2277	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2278	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2279	# ERMITTELN
2280	(( i = 0 ))
2281	while (( i < iout ))
2282	do
2283	(( i = i + 1 ))
2284	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2285	then
2286	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2287	else
2288	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2289	fi
2290	done
2291
2292
2293	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2294	if [[ $do_compile = true ]]
2295	then
2296
2297
2298	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2299	printf "\n\n\n *** compilation starts \n$striche\n"
2300	printf " *** compilation with make using following options:\n"
2301	printf " compilername: $compiler_name\n"
2302	printf " options: $fopts\n"
2303	printf " preprocessor-directives: $cpp_options \n"
2304	printf " linker-options: $lopts \n"
2305	printf " source code files: $source_list \n"
2306
2307	if [[ $localhost = nech ]]
2308	then
2309	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2310	cp $TEMPDIR_COMPILE/a.out .
2311	[[ $? != 0 ]] && compile_error=true
2312	rm -rf $TEMPDIR_COMPILE
2313	elif [[ $localhost = lcsgib ]]
2314	then
2315	printf " compiler is called via ssh on \"bicegate\" \n"
2316	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2317	[[ ! -f a.out ]] && compile_error=true
2318	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2319	elif [[ $localhost = lcsgih ]]
2320	then
2321	printf " compiler is called via ssh on \"hicegate\" \n"
2322	ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2323	# ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2324	# print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " \| ssh ${usern}@130.75.4.102 2>&1
2325	[[ ! -f a.out ]] && compile_error=true
2326	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2327	else
2328	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2329	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2330	fi
2331
2332	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2333	then
2334	printf "\n +++ error occured while compiling or linking"
2335	locat=compile
2336
2337	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2338	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2339	# then
2340	exit
2341	# else
2342	# locat=normal
2343	# fi
2344	else
2345	printf "$striche\n *** compilation finished \n"
2346	fi
2347	fi
2348
2349
2350	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2351	if [[ $local_compile = true ]]
2352	then
2353	cd $HOME
2354	rm -rf $TEMPDIR
2355	locat=local_compile; exit
2356	fi
2357
2358
2359	# BEREITSTELLEN DER INPUT-DATEIEN
2360	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2361	(( i = 0 ))
2362	while (( i < iin ))
2363	do
2364	(( i = i + 1 ))
2365	if (( i == 1 ))
2366	then
2367	printf "\n\n *** providing INPUT-files:\n$striche"
2368	fi
2369
2370
2371	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2372	if [[ "${transin[$i]}" = unavailable ]]
2373	then
2374	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2375	then
2376	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2377	printf "\n is not available!"
2378	else
2379	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2380	printf "\n is not available!"
2381	fi
2382	continue
2383	fi
2384
2385	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2386	files_for_pes=false; datentyp=file
2387	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2388	then
2389	files_for_pes=true; datentyp=directory
2390	actionin[$i]=""
2391	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2392	then
2393	actionin[$i]=""
2394	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2395	then
2396	files_for_pes=true; datentyp=directory
2397	actionin[$i]="ar"
2398	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2399	then
2400	actionin[$i]="ar"
2401	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2402	then
2403	files_for_pes=true; datentyp=directory
2404	actionin[$i]="fl"
2405	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2406	then
2407	actionin[$i]="fl"
2408	fi
2409
2410	if [[ $files_for_pes = true ]]
2411	then
2412	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2413	else
2414	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2415	fi
2416
2417	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2418	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2419	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2420	# SERVER ZU HOLEN
2421	if [[ "${actionin[$i]}" = fl ]]
2422	then
2423	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2424	if [[ $files_for_pes = false ]]
2425	then
2426	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2427	then
2428	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2429	got_tmp[$i]=true
2430	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2431	then
2432	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2433	printf "\n *** trying to use backup copy in \"$WORK\" "
2434	cp $WORK/${frelin[$i]} ${localin[$i]}
2435	else
2436	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2437	printf "\n or \"$tmp_data_catalog\" does not exist!"
2438	printf "\n *** trying to get copy from archive"
2439	actionin[$i]=ar
2440	fi
2441	else
2442	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2443	then
2444	mkdir ${localin[$i]}
2445	cd $tmp_data_catalog/${frelin[$i]}
2446	for file in $(ls *)
2447	do
2448	ln $file $TEMPDIR/${localin[$i]}
2449	done
2450	cd $TEMPDIR
2451	got_tmp[$i]=true
2452	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2453	then
2454	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2455	printf "\n *** trying to use backup copy in \"$WORK\" "
2456	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2457	else
2458	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2459	printf "\n or \"$tmp_data_catalog\" does not exist!"
2460	printf "\n *** trying to get copy from archive"
2461	actionin[$i]=ar
2462	fi
2463	fi
2464	fi
2465
2466
2467	# DATEI LIEGT AUF ARCHIV-SERVER
2468	if [[ "${actionin[$i]}" = ar ]]
2469	then
2470
2471	if [[ $files_for_pes = false ]]
2472	then
2473	printf "\n file will be restored from archive-system ($archive_system)!"
2474	else
2475	printf "\n directory will be restored from archive-system ($archive_system)!"
2476	fi
2477
2478	file_restored=false
2479
2480	if [[ $archive_system = asterix ]]
2481	then
2482	do_stagein=true
2483	(( stagein_anz = 0 ))
2484	while [[ $do_stagein = true ]]
2485	do
2486	if [[ $files_for_pes = false ]]
2487	then
2488	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2489	else
2490	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2491	fi
2492	cat STAGEIN_OUTPUT
2493	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2494	then
2495	file_restored=true
2496	do_stagein=false
2497	else
2498	(( stagein_anz = stagein_anz + 1 ))
2499	if (( stagein_anz == 10 ))
2500	then
2501	printf "\n +++ stagein stoped after 10 tries"
2502	locat=stage
2503	exit
2504	fi
2505	printf "\n +++ restoring from archive failed, trying again:"
2506	sleep 900
2507	fi
2508	done
2509	elif [[ $archive_system = DMF ]]
2510	then
2511	if [[ $files_for_pes = false ]]
2512	then
2513	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2514	locat=DMF
2515	exit
2516	else
2517	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2518	cp -r $ARCHIVE/${frelin[$i]} $PWD
2519	file_restored=true
2520	fi
2521	elif [[ $archive_system = tivoli ]]
2522	then
2523	if [[ $files_for_pes = false ]]
2524	then
2525	if [[ $localhost = ibmh ]]
2526	then
2527	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2528	else
2529	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2530	fi
2531	else
2532	(( inode = 0 ))
2533	while (( inode < nodes ))
2534	do
2535	if [[ $localhost = ibmh ]]
2536	then
2537	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2538	else
2539	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2540	fi
2541	(( inode = inode + 1 ))
2542	done
2543	fi
2544	file_restored=true
2545	elif [[ $archive_system = ut ]]
2546	then
2547	if [[ $files_for_pes = false ]]
2548	then
2549	cp $UT/${frelin[$i]} .
2550	else
2551	(( inode = 0 ))
2552	while (( inode < nodes ))
2553	do
2554	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2555	(( inode = inode + 1 ))
2556	done
2557	fi
2558	file_restored=true
2559	else
2560	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2561	locat=rearchive
2562	exit
2563	fi
2564
2565	if [[ $file_restored = true ]]
2566	then
2567
2568	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2569	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2570	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2571	if [[ $files_for_pes = false ]]
2572	then
2573	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2574	else
2575	mkdir $tmp_data_catalog/${frelin[$i]}
2576	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2577	fi
2578	got_tmp[$i]=true
2579
2580	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2581	mv ${frelin[$i]} ${localin[$i]}
2582
2583	fi
2584	fi
2585
2586
2587	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2588	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2589	then
2590
2591	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2592	then
2593
2594	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2595	printf "\n file will be provided for $numprocs processors"
2596	mkdir ${localin[$i]}
2597	ival=$numprocs
2598	(( ii = 0 ))
2599	while (( ii <= ival-1 ))
2600	do
2601	if (( ii < 10 ))
2602	then
2603	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2604	elif (( ii < 100 ))
2605	then
2606	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2607	elif (( ii < 1000 ))
2608	then
2609	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2610	else
2611	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2612	fi
2613	(( ii = ii + 1 ))
2614	done
2615
2616	else
2617
2618	if [[ $files_for_pes = true ]]
2619	then
2620
2621	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2622	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2623	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2624	# PER MOVE UMBENANNT WERDEN
2625	printf "\n providing $numprocs files for the respective processors"
2626	mkdir ${localin[$i]}
2627	if [[ $link_local_input = true ]]
2628	then
2629	printf " using ln -f\n"
2630	cd ${absnamein[$i]}
2631	for file in $(ls *)
2632	do
2633	ln -f $file ${localin[$i]}
2634	done
2635	cd $TEMPDIR
2636	fi
2637	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2638	if [[ ! -f "${localin[$i]}/_0000" ]]
2639	then
2640	if [[ $link_local_input = true ]]
2641	then
2642	printf " ln failed for .../_0000, using cp...\n"
2643	fi
2644	cp -r ${absnamein[$i]}/* ${localin[$i]}
2645	fi
2646
2647	else
2648	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2649	if [[ $link_local_input = true ]]
2650	then
2651	printf " using ln -f\n"
2652	ln -f ${absnamein[$i]} ${localin[$i]}
2653	fi
2654	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2655	if [[ ! -f "${localin[$i]}" ]]
2656	then
2657	if [[ $link_local_input = true ]]
2658	then
2659	printf " ln failed, using cp...\n"
2660	fi
2661	cp ${absnamein[$i]} ${localin[$i]}
2662	fi
2663	fi
2664	fi
2665	fi
2666
2667	done
2668	if (( i != 0 ))
2669	then
2670	printf "\n$striche\n *** all INPUT-files provided \n"
2671	fi
2672
2673
2674	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2675	# LESEN VON PALM)
2676	cat > ENVPAR << %%END%%
2677	&envpar run_identifier = '$fname', host = '$localhost',
2678	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2679	maximum_cpu_time_allowed = ${cpumax}.,
2680	revision = '$global_revision' /
2681
2682	%%END%%
2683
2684
2685	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2686	(( i = 0 ))
2687	while (( i < iic ))
2688	do
2689	(( i = i + 1 ))
2690	if (( i == 1 ))
2691	then
2692	printf "\n\n *** execution of INPUT-commands:\n$striche"
2693	fi
2694	printf "\n >>> ${in_command[$i]}"
2695	eval ${in_command[$i]}
2696	if (( i == iic ))
2697	then
2698	printf "\n$striche\n"
2699	fi
2700	done
2701
2702
2703	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2704	cpurest=${cpumax}.
2705
2706
2707	# PROGRAMMSTART
2708	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2709	PATH=$PATH:$TEMPDIR
2710
2711	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2712	then
2713	if [[ "$ENVIRONMENT" = BATCH ]]
2714	then
2715	printf "\n +++ debug is allowed in interactive mode only"
2716	locat=debug
2717	exit
2718	fi
2719	if [[ $localhost = decalpha ]]
2720	then
2721	dxladebug a.out
2722	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2723	then
2724
2725	# SETUP THE IBM MPI ENVIRONMENT
2726	export MP_SHARED_MEMORY=yes
2727	export AIXTHREADS_SCOPE=S
2728	export OMP_NUM_THREADS=$threads_per_task
2729	export AUTHSTATE=files
2730	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2731
2732	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2733	export MP_ADAPTER_USE=shared
2734	export MP_CPU_USE=multiple
2735	export MP_TIMEOUT=1200
2736
2737	unset MP_TASK_AFFINITY
2738
2739	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2740	#(( ii = 1 ))
2741	#while (( ii <= $numprocs ))
2742	#do
2743	# echo $localhost_realname >> hostfile
2744	# (( ii = ii + 1 ))
2745	#done
2746	#export MP_HOSTFILE=hostfile
2747
2748	if [[ "$LOADLBATCH" = yes ]]
2749	then
2750	totalview poe a.out $ROPTS
2751	else
2752	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2753	export TVDSVRLAUNCHCMD=ssh
2754	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2755	fi
2756	else
2757	printf "\n +++ no debug available on \"$localhost\" "
2758	printf "\n or not implemented in mrun so far"
2759	locat=debug
2760	exit
2761	fi
2762	else
2763	if [[ -n $numprocs ]]
2764	then
2765
2766	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2767	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2768	then
2769	# SETUP THE IBM MPI ENVIRONMENT
2770	export MP_SHARED_MEMORY=yes
2771	export AIXTHREAD_SCOPE=S
2772	export OMP_NUM_THREADS=$threads_per_task
2773	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2774	export AUTHSTATE=files
2775	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2776	# export MP_PRINTENV=yes
2777
2778	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2779	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2780	export MP_WAIT_MODE=poll
2781	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2782	# export MP_EAGER_LIMIT=65535
2783
2784	# # TESTWEISE FUER TURBOMPI (JAN 05)
2785	# export MPJ_MTAB=128
2786	# export MPJ_ALLTOALL=1
2787	# export MPJ_ALLTOALLV=1
2788
2789	if [[ "$LOADLBATCH" = yes ]]
2790	then
2791	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2792	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2793	then
2794	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2795	else
2796	poe ./a.out $ROPTS
2797	fi
2798	else
2799	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2800	then
2801	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2802	elif [[ $localhost = ibmy ]]
2803	then
2804	if [[ -f $hostfile ]]
2805	then
2806	cp $hostfile hostfile
2807	else
2808	(( ii = 1 ))
2809	while (( ii <= $numprocs ))
2810	do
2811	echo $localhost_realname >> hostfile
2812	(( ii = ii + 1 ))
2813	done
2814	fi
2815	export MP_HOSTFILE=hostfile
2816	./a.out -procs $tasks_per_node $ROPTS
2817	else
2818	if [[ "$host_file" = "" ]]
2819	then
2820	printf "\n +++ no hostfile given in configuration file"
2821	locat=config_file
2822	exit
2823	else
2824	eval host_file=$host_file
2825	fi
2826	export MP_HOSTFILE=$host_file
2827	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2828	fi
2829	fi
2830	elif [[ $host = nech \|\| $host = neck ]]
2831	then
2832	(( ii = nodes ))
2833	if [[ $ii = 1 ]]
2834	then
2835	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2836	export MPIPROGINF=YES
2837	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2838	echo "*** execution on single node with mpirun"
2839	mpirun -np $numprocs ./a.out $ROPTS
2840	else
2841	(( i = 0 ))
2842	while (( i < ii ))
2843	do
2844	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2845	(( i = i + 1 ))
2846	done
2847
2848	echo "#!/bin/sh" > mpi_exec_shell
2849	echo " " >> mpi_exec_shell
2850	echo "set -u" >> mpi_exec_shell
2851	echo "F_ERRCNT=0" >> mpi_exec_shell
2852	echo "MPIPROGINV=YES" >> mpi_exec_shell
2853	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2854	echo "cpurest=$cpurest" >> mpi_exec_shell
2855	echo "fname=$fname" >> mpi_exec_shell
2856	echo "localhost=$localhost" >> mpi_exec_shell
2857	echo "return_addres=$return_addres" >> mpi_exec_shell
2858	echo "return_username=$return_username" >> mpi_exec_shell
2859	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2860	echo "write_binary=$write_binary" >> mpi_exec_shell
2861	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2862	echo " " >> mpi_exec_shell
2863	echo "export F_ERRCNT" >> mpi_exec_shell
2864	echo "export MPIPROGINV" >> mpi_exec_shell
2865	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2866	echo "export cpurest" >> mpi_exec_shell
2867	echo "export fname" >> mpi_exec_shell
2868	echo "export localhost" >> mpi_exec_shell
2869	echo "export return_addres" >> mpi_exec_shell
2870	echo "export return_username" >> mpi_exec_shell
2871	echo "export tasks_per_node" >> mpi_exec_shell
2872	echo "export write_binary" >> mpi_exec_shell
2873	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2874	echo " " >> mpi_exec_shell
2875	echo "exec ./a.out" >> mpi_exec_shell
2876
2877	chmod u+x mpi_exec_shell
2878	export MPIPROGINF=YES
2879	mpirun -f multinode_config &
2880	wait
2881
2882	fi
2883	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2884	then
2885
2886	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2887	# DOES NOT EXIST
2888	if [[ $host != lcsgih && $host != lcsgib ]]
2889	then
2890	if [[ -f $hostfile ]]
2891	then
2892	cp $hostfile hostfile
2893	else
2894	(( ii = 1 ))
2895	while (( ii <= $numprocs / $threads_per_task ))
2896	do
2897	echo $localhost_realname >> hostfile
2898	(( ii = ii + 1 ))
2899	done
2900	fi
2901	eval zeile=\"`head -n $ii hostfile`\"
2902	printf "\n *** running on: $zeile"
2903	fi
2904
2905	(( ii = $numprocs / $threads_per_task ))
2906	export OMP_NUM_THREADS=$threads_per_task
2907	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2908	if [[ $threads_per_task != 1 ]]
2909	then
2910	printf "\n threads per task: $threads_per_task"
2911	fi
2912	if [[ $run_coupled_model = false ]]
2913	then
2914	printf "\n\n"
2915	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2916	then
2917	# ulimit -s 300000 # A too large stack size causes problems
2918	# export MV2_NUM_PORTS=2
2919	# export MV2_CPU_MAPPING=0:1:2:3
2920	# mpiexec ./a.out $ROPTS
2921	mpiexec_mpt -np $ii ./a.out $ROPTS
2922	elif [[ $host = lcxt4 ]]
2923	then
2924	aprun -n $ii -N $tasks_per_node a.out $ROPTS
2925	else
2926	echo "no_coupling" > runfile_atmos
2927	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
2928	fi
2929	else
2930
2931	# currently there is no full MPI-2 support on ICE and XT4
2932	(( iia = $numprocs_atmos / $threads_per_task ))
2933	(( iio = $numprocs_ocean / $threads_per_task ))
2934	printf "\n coupled run ($iia atmosphere, $iio ocean)"
2935	printf "\n using $coupled_mode coupling"
2936	printf "\n\n"
2937
2938	if [[ $coupled_mode = "mpi2" ]]
2939	then
2940	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
2941	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
2942	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2943	then
2944
2945	mpiexec_mpt -np $iia ./palm $ROPTS < runfile_atmos &
2946	mpiexec_mpt -np $iio ./palm $ROPTS < runfile_ocean &
2947
2948	elif [[ $host = lcxt4 ]]
2949	then
2950
2951	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
2952	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
2953
2954	else
2955	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
2956	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
2957	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
2958	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
2959	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
2960	fi
2961	wait
2962
2963	else
2964
2965	echo "coupled_run $iia $iio" > runfile_atmos
2966	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2967	then
2968
2969	mpiexec_mpt -np $ii a.out $ROPTS < runfile_atmos
2970
2971	elif [[ $host = lcxt4 ]]
2972	then
2973
2974	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
2975
2976	fi
2977	wait
2978	fi
2979
2980	# if [[ $scirocco = true ]]
2981	# then
2982	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
2983	# else
2984	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
2985	# fi
2986	fi
2987	elif [[ $host = decalpha ]]
2988	then
2989	dmpirun -np $numprocs a.out $ROPTS
2990	elif [[ $host = lctit ]]
2991	then
2992	export runfile=runfile.$kennung
2993
2994	echo "cd $PWD" > $runfile
2995	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2996	echo "export cpurest=$cpurest" >> $runfile
2997	echo "export fname=$fname" >> $runfile
2998	echo "export localhost=$localhost" >> $runfile
2999	echo "export return_addres=$return_addres" >> $runfile
3000	echo "export return_username=$return_username" >> $runfile
3001	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3002	echo "export write_binary=$write_binary" >> $runfile
3003	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3004	echo "./a.out" >> $runfile
3005	chmod u+x $runfile
3006
3007	if [[ "$QUEUE" = interactive ]]
3008	then
3009	mpirun -np $numprocs a.out $ROPTS
3010	else
3011	(( mem_tsubame = $memory / 1024.0 ))
3012	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3013	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3014	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3015	fi
3016
3017	rm $runfile
3018	else
3019	mpprun -n $numprocs a.out $ROPTS
3020	fi
3021	[[ $? != 0 ]] && execution_error=true
3022
3023
3024	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3025	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3026	then
3027	apprentice
3028	fi
3029	else
3030	a.out $ROPTS
3031	fi
3032	fi
3033	if [[ $? != 0 \|\| $execution_error = true ]]
3034	then
3035
3036	# ABBRUCH BEI LAUFZEITFEHLER
3037	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3038	printf "\n +++ runtime error occured"
3039	locat=execution
3040	exit
3041	else
3042	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3043	printf "\n$striche\n *** execution finished \n"
3044	fi
3045
3046
3047
3048	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3049	(( i = 0 ))
3050	while (( i < ioc ))
3051	do
3052	(( i = i + 1 ))
3053	if (( i == 1 ))
3054	then
3055	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3056	fi
3057	printf "\n >>> ${out_command[$i]}"
3058	eval ${out_command[$i]}
3059	if (( i == ioc ))
3060	then
3061	printf "\n$striche\n"
3062	fi
3063	done
3064
3065
3066	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3067	if [[ $do_trace = true ]]
3068	then
3069	printf "\n\n"
3070	ls -al
3071	fi
3072
3073
3074
3075	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3076	(( i = 0 ))
3077	while (( i < iout ))
3078	do
3079	(( i = i + 1 ))
3080	if (( i == 1 ))
3081	then
3082	printf "\n\n *** saving OUTPUT-files:\n$striche"
3083	fi
3084
3085	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3086	files_for_pes=false; filetyp=file
3087	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3088	then
3089	files_for_pes=true; filetyp=directory
3090	actionout[$i]=""
3091	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3092	then
3093	actionout[$i]=""
3094	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3095	then
3096	files_for_pes=true; filetyp=directory
3097	actionout[$i]="ar"
3098	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3099	then
3100	actionout[$i]="ar"
3101	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3102	then
3103	files_for_pes=true; filetyp=directory
3104	actionout[$i]="fl"
3105	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3106	then
3107	actionout[$i]="fl"
3108	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3109	then
3110	files_for_pes=true; filetyp=directory
3111	actionout[$i]="tr"
3112	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3113	then
3114	actionout[$i]="tr"
3115	fi
3116
3117	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3118	then
3119	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3120	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3121	then
3122	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3123	else
3124
3125
3126	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3127	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3128	# REMOTE-RECHNUNGEN
3129	if [[ "${actionout[$i]}" = tr ]]
3130	then
3131	if [[ $localhost != $fromhost ]]
3132	then
3133	if [[ $files_for_pes = false ]]
3134	then
3135	cps=""
3136	cst=""
3137	else
3138	cps=-c
3139	cst="/"
3140	fi
3141	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3142	then
3143
3144	# TRANSFER IN EIGENSTAENDIGEM JOB
3145	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3146	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3147	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3148	if [[ $files_for_pes = false ]]
3149	then
3150	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3151	else
3152	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3153	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3154	fi
3155
3156	echo "set -x" > transfer_${localout[$i]}
3157	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3158
3159	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3160	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3161	printf "\n or higher cycle\n"
3162	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3163
3164	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3165
3166	if [[ $localhost = nech ]]
3167	then
3168	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3169	else
3170	if [[ "$LOGNAME" = b323013 ]]
3171	then
3172	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3173	else
3174	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3175	fi
3176	fi
3177
3178	else
3179
3180	# TRANSFER INNERHALB DIESES JOBS
3181	transfer_failed=false
3182	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3183	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3184	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3185	[[ $? != 0 ]] && transfer_failed=true
3186
3187	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3188	# LOKALER MASCHINE ANLEGEN
3189	if [[ $transfer_failed = true ]]
3190	then
3191	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3192	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3193
3194	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3195	# ANLEGEN.
3196	eval local_catalog=${pathout[$i]}
3197	if [[ ! -d $local_catalog ]]
3198	then
3199	printf " *** local directory does not exist. Trying to create:\n"
3200	printf " $local_catalog \n"
3201	mkdir -p $local_catalog
3202	fi
3203	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3204	transfer_problems=true
3205	fi
3206	fi
3207	else
3208
3209	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3210	actionout[$i]=""
3211	fi
3212	fi
3213
3214
3215	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3216	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3217	# REMOTE-RECHNUNGEN
3218	if [[ "${actionout[$i]}" = tra ]]
3219	then
3220	if [[ $localhost != $fromhost ]]
3221	then
3222	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3223	then
3224
3225	# TRANSFER IN EIGENSTAENDIGEM JOB
3226	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3227	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3228	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3229	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3230
3231	echo "set -x" > transfer_${localout[$i]}
3232	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3233
3234	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3235	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3236	printf "\n or higher cycle\n"
3237	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3238
3239	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3240
3241	if [[ $localhost = nech ]]
3242	then
3243	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3244	else
3245	if [[ $LOGNAME = b323013 ]]
3246	then
3247	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3248	else
3249	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3250	fi
3251	fi
3252
3253	else
3254
3255	# TRANSFER INNERHALB DIESES JOBS
3256	transfer_failed=false
3257	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3258	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3259	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3260	[[ $? != 0 ]] && transfer_failed=true
3261
3262	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3263	# LOKALER MASCHINE ANLEGEN
3264	if [[ $transfer_failed = true ]]
3265	then
3266	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3267	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3268
3269	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3270	# ANLEGEN
3271	eval local_catalog=${pathout[$i]}
3272	if [[ ! -d $local_catalog ]]
3273	then
3274	printf " *** local directory does not exist. Trying to create:\n"
3275	printf " $local_catalog \n"
3276	mkdir -p $local_catalog
3277	fi
3278
3279	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3280	transfer_problems=true
3281	fi
3282	fi
3283	else
3284
3285	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3286	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3287	actionout[$i]=a
3288	fi
3289	fi
3290
3291
3292	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3293	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3294	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3295	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3296	if [[ "${actionout[$i]}" = fl ]]
3297	then
3298	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3299	chmod g+rx $tmp_data_catalog
3300	if [[ $files_for_pes = false ]]
3301	then
3302	printf "\n >>> OUTPUT: ${localout[$i]} to"
3303	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3304	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3305	else
3306	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3307	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3308	mkdir $tmp_data_catalog/${frelout[$i]}
3309	cd ${localout[$i]}
3310	for file in $(ls *)
3311	do
3312	ln -f $file $tmp_data_catalog/${frelout[$i]}
3313	done
3314	cd $TEMPDIR
3315	fi
3316
3317
3318	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3319	if [[ $store_on_archive_system = true ]]
3320	then
3321
3322	if [[ $archive_system = asterix ]]
3323	then
3324	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3325	if [[ $files_for_pes = false ]]
3326	then
3327	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3328	else
3329	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3330	fi
3331	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3332	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3333	echo "then" >> archive_${frelout[$i]}
3334	echo " do_stageout=false" >> archive_${frelout[$i]}
3335	echo "else" >> archive_${frelout[$i]}
3336	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3337	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3338	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3339	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3340	if [[ $files_for_pes = false ]]
3341	then
3342	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3343	else
3344	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3345	fi
3346	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3347	echo "fi" >> archive_${frelout[$i]}
3348	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3349	elif [[ $archive_system = DMF ]]
3350	then
3351	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3352	if [[ $files_for_pes = false ]]
3353	then
3354	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3355	locat=DMF
3356	exit
3357	else
3358	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3359	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3360	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3361	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3362	fi
3363	elif [[ $archive_system = tivoli ]]
3364	then
3365	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3366	if [[ $files_for_pes = false ]]
3367	then
3368	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3369	echo "set -x" >> archive_${frelout[$i]}
3370	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3371	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3372	else
3373
3374	echo "set -x" >> archive_${frelout[$i]}
3375	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3376	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3377	cd $tmp_data_catalog
3378	all_files=`ls -1 ${frelout[$i]}/*`
3379	cd - > /dev/null
3380	(( inode = 0 ))
3381	(( tp1 = tasks_per_node + 1 ))
3382	while (( inode < nodes ))
3383	do
3384	# echo "*** all_files = \"$all_files\" "
3385	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3386	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3387	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3388	# echo "*** files = \"$files\" "
3389	# echo "*** all_files = \"$all_files\" "
3390	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3391	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3392	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3393	(( inode = inode + 1 ))
3394	done
3395	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3396	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3397	fi
3398	elif [[ $archive_system = ut ]]
3399	then
3400	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3401	if [[ $files_for_pes = false ]]
3402	then
3403	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3404	echo "set -x" >> archive_${frelout[$i]}
3405	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3406	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3407	else
3408
3409	echo "set -x" >> archive_${frelout[$i]}
3410	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3411	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3412	cd $tmp_data_catalog
3413	all_files=`ls -1 ${frelout[$i]}/*`
3414	cd - > /dev/null
3415	(( inode = 0 ))
3416	(( tp1 = tasks_per_node + 1 ))
3417	while (( inode < nodes ))
3418	do
3419	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3420	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3421	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3422	(( inode = inode + 1 ))
3423	done
3424	fi
3425	elif [[ $archive_system = none ]]
3426	then
3427	printf " +++ archiving on $localhost not available!\n"
3428	fi
3429
3430	if [[ $archive_system != none ]]
3431	then
3432	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3433	then
3434	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3435	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3436	elif [[ $localhost = nech ]]
3437	then
3438	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3439	fi
3440	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3441	fi
3442	else
3443	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3444	fi
3445
3446
3447	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3448	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3449	if [[ $files_for_pes = false ]]
3450	then
3451	cat /dev/null > ${pathout[$i]}
3452	else
3453	mkdir -p ${pathout[$i]}
3454	fi
3455
3456	fi
3457
3458
3459	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3460	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3461	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3462	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3463	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3464	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3465	if [[ "${actionout[$i]}" = ar ]]
3466	then
3467	if [[ $files_for_pes = false ]]
3468	then
3469	printf "\n >>> OUTPUT: ${localout[$i]} to"
3470	printf "\n ${pathout[$i]}"
3471	printf "\n File will be copied to archive-system ($archive_system) !\n"
3472	else
3473	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3474	printf "\n ${pathout[$i]}"
3475	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3476	fi
3477	mv ${localout[$i]} ${frelout[$i]}
3478
3479	file_saved=false
3480
3481	if [[ $archive_system = asterix ]]
3482	then
3483	do_stageout=true
3484	(( stageout_anz = 0 ))
3485	while [[ $do_stageout = true ]]
3486	do
3487	if [[ $files_for_pes = false ]]
3488	then
3489	stageout ${frelout[$i]} > STAGE_OUTPUT
3490	else
3491	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3492	fi
3493	cat STAGE_OUTPUT
3494	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3495	then
3496	file_saved=true
3497	do_stageout=false
3498	else
3499	if [[ $files_for_pes = false ]]
3500	then
3501	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3502	else
3503	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3504	fi
3505	(( stageout_anz = stageout_anz + 1 ))
3506	if (( stageout_anz == 10 ))
3507	then
3508	printf "\n +++ stoped after 10 unsuccessful tries!"
3509	archive_save=false
3510	do_stageout=false
3511	else
3512	printf "\n *** new try to store on archive after 15 min:"
3513	sleep 900
3514	fi
3515	fi
3516	done
3517	elif [[ $archive_system = DMF ]]
3518	then
3519	if [[ $files_for_pes = false ]]
3520	then
3521	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3522	locat=DMF
3523	exit
3524	else
3525	rm -rf $ARCHIVE/${frelout[$i]}
3526	cp -r ${frelout[$i]} $ARCHIVE
3527	fi
3528	file_saved=true
3529	elif [[ $archive_system = tivoli ]]
3530	then
3531	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3532	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3533	# GELEGT WERDEN
3534	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3535	chmod g+rx $tmp_data_catalog
3536	if [[ $files_for_pes = false ]]
3537	then
3538	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3539	else
3540	mkdir $tmp_data_catalog/${frelout[$i]}
3541	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3542	fi
3543
3544	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3545	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3546	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3547	if [[ $files_for_pes = false ]]
3548	then
3549	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3550	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3551	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3552	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3553	else
3554	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3555	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3556	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3557	fi
3558
3559	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3560	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3561	file_saved=true
3562
3563	elif [[ $archive_system = ut ]]
3564	then
3565	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3566	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3567	# GELEGT WERDEN
3568	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3569	chmod g+rx $tmp_data_catalog
3570	if [[ $files_for_pes = false ]]
3571	then
3572	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3573	else
3574	mkdir $tmp_data_catalog/${frelout[$i]}
3575	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3576	fi
3577
3578	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3579	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3580	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3581	if [[ $files_for_pes = false ]]
3582	then
3583	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3584	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3585	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3586	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3587	else
3588	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3589	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3590	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3591	fi
3592
3593	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3594	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3595	file_saved=true
3596
3597	else
3598	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3599	archive_save=false
3600	fi
3601	if [[ $file_saved = true ]]
3602	then
3603	if [[ $files_for_pes = false ]]
3604	then
3605	cat /dev/null > ${pathout[$i]}
3606	else
3607	mkdir -p ${pathout[$i]}
3608	fi
3609	fi
3610	fi
3611
3612	# APPEND AUF LOKALER MASCHINE
3613	if [[ "${actionout[$i]}" = "a" ]]
3614	then
3615	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3616	cat ${localout[$i]} >> ${pathout[$i]}
3617	fi
3618
3619	# KOPIEREN AUF LOKALER MASCHINE
3620	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3621	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3622	then
3623
3624	# KOPIEREN AUF EINPROZESSORMASCHINE
3625	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3626	then
3627	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3628	if [[ $link_local_output = true ]]
3629	then
3630	printf " using ln -f\n"
3631	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3632	fi
3633	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3634	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3635	then
3636	if [[ $link_local_output = true ]]
3637	then
3638	printf " ln failed, using cp...\n"
3639	fi
3640	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3641	fi
3642	else
3643	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3644	if [[ $link_local_output = true ]]
3645	then
3646	printf " using ln -f\n"
3647	ln -f ${localout[$i]} ${pathout[$i]}
3648	fi
3649	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3650	if [[ ! -f "${pathout[$i]}" ]]
3651	then
3652	if [[ $link_local_output = true ]]
3653	then
3654	printf " ln failed, using cp...\n"
3655	fi
3656	cp ${localout[$i]} ${pathout[$i]}
3657	fi
3658	fi
3659
3660	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3661	then
3662
3663	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3664	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3665	# WIRD DANN KOPIERT
3666	# PER MOVE UMBENANNT WERDEN
3667	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3668	if [[ $link_local_output = true ]]
3669	then
3670	printf " using ln -f\n"
3671	mkdir ${pathout[$i]}
3672	cd ${localout[$i]}
3673	for file in $(ls *)
3674	do
3675	ln -f $file ${pathout[$i]}
3676	done
3677	cd $TEMPDIR
3678	fi
3679	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3680	if [[ ! -f "${pathout[$i]}/_0000" ]]
3681	then
3682	if [[ $link_local_output = true ]]
3683	then
3684	printf " ln failed for .../_0000, using cp...\n"
3685	fi
3686	cp -r ${localout[$i]} ${pathout[$i]}
3687	fi
3688
3689	fi
3690	fi
3691	done
3692	if (( i != 0 ))
3693	then
3694	if [[ $transfer_problems = true ]]
3695	then
3696	printf "\n$striche\n *** OUTPUT-files saved"
3697	printf "\n +++ WARNING: some data transfers failed! \n"
3698	else
3699	printf "\n$striche\n *** all OUTPUT-files saved \n"
3700	fi
3701	fi
3702
3703
3704	# EVENTUELL FOLGEJOB STARTEN
3705	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3706	if [[ -f CONTINUE_RUN ]]
3707	then
3708
3709	if [[ $archive_save = true ]]
3710	then
3711
3712	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3713	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3714	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3715	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3716	# HANDEN
3717	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3718	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3719	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3720	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3721	then
3722	mc=`echo $mc \| sed 's/#/f/g'`
3723	fi
3724
3725
3726	# JOB STARTEN
3727	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3728	echo " $mc"
3729	printf "\n$striche\n"
3730	if [[ $localhost != $fromhost ]]
3731	then
3732
3733	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3734	then
3735	echo "*** ssh will be used to initiate restart-runs!"
3736	echo " return_addres=\"$return_addres\" "
3737	echo " return_username=\"$return_username\" "
3738	if [[ $return_addres = 172.20.25.41 ]]
3739	then
3740	# WORKAROUND AUF SCIROCCO AM TIT
3741	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3742	else
3743	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3744	fi
3745	else
3746	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3747	locat=restart; exit
3748	fi
3749
3750	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3751	# DER AKTUELLE JOB ENDET
3752	sleep 30
3753
3754	else
3755
3756	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3757	# RUFEN WERDEN, AUSSER AUF lcfimm
3758	cd $LOCAL_PWD
3759	if [[ $localhost = lcfimm ]]
3760	then
3761	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3762	else
3763	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3764	fi
3765	cd - > /dev/null
3766	fi
3767	printf "\n$striche\n *** restart-run initiated \n"
3768
3769
3770	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3771	# GEHOLT WORDEN SIND, LOESCHEN
3772	(( i = 0 ))
3773	while (( i < iin ))
3774	do
3775	(( i = i + 1 ))
3776	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3777	then
3778	rm -r $tmp_data_catalog/${frelin[$i]}
3779	fi
3780	done
3781
3782	else
3783
3784	printf "\n +++ no restart-run possible, since errors occured"
3785	printf "\n during the archive process"
3786	fi
3787
3788	fi
3789
3790
3791
3792	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3793	if [[ "$email_notification" != "" ]]
3794	then
3795
3796	if [[ $localhost != $fromhost ]]
3797	then
3798	if [[ -f CONTINUE_RUN ]]
3799	then
3800	echo "PALM restart run necessary" > email_text
3801	echo "description header of actual run:" >> email_text
3802	cat CONTINUE_RUN >> email_text
3803	echo "mrun-command to restart:" >> email_text
3804	echo "$mc" >> email_text
3805	else
3806	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3807	fi
3808	mail $email_notification < email_text
3809	printf "\n *** email notification sent to \"$email_notification\" "
3810	fi
3811	fi
3812
3813
3814
3815	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3816	cd $HOME
3817	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3818
3819	else
3820
3821
3822	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3823	# CHENDE AKTIONEN DURCHGEFUEHRT
3824
3825	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3826	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3827	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3828	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3829	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3830	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3831	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3832	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3833	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3834	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3835	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3836	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3837	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3838	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3839	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3840	if [[ $use_openmp = true ]]
3841	then
3842	mrun_com=${mrun_com}" -O"
3843	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3844	else
3845	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3846	fi
3847	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3848	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3849	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3850	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3851	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3852	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
3853	if [[ $do_remote = true ]]
3854	then
3855	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3856	fi
3857
3858
3859	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3860	jobfile=jobfile.$RANDOM
3861
3862
3863	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3864	echo "mkdir $TEMPDIR" >> $jobfile
3865	echo "cd $TEMPDIR" >> $jobfile
3866
3867
3868	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3869	if [[ $do_trace = true ]]
3870	then
3871	echo "set -x" >> $jobfile
3872	else
3873	echo "set +vx" >> $jobfile
3874	fi
3875
3876
3877	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
3878	# DATEI FUER DEN JOB
3879	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
3880	then
3881
3882	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
3883	# KOPIEREN
3884	if [[ $restart_run != true ]]
3885	then
3886	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
3887	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
3888	fi
3889
3890	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
3891	echo "set -x" >> $jobfile
3892	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
3893	echo "export SOURCES_COMPLETE=true" >> $jobfile
3894
3895	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
3896	# ARBEITSVERZEICHNIS VERSCHIEBEN
3897	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
3898	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
3899	echo "execute_mrun=true" >> $jobfile
3900	echo " " >> $jobfile
3901
3902	else
3903
3904	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3905	# SOWIE GEGEBENENFALLS DES MAKEFILES
3906	if [[ $do_compile = true ]]
3907	then
3908
3909	source_catalog=SOURCES_FOR_RUN_$fname
3910
3911	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3912	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3913	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3914	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3915	echo "export SOURCES_COMPLETE=true" >> $jobfile
3916	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3917
3918	for filename in $source_list
3919	do
3920	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3921	echo "cat > $filename << \"%END%\"" >> $jobfile
3922	cat $source_catalog/$filename >> $jobfile
3923	echo " " >> $jobfile
3924	echo "%END%" >> $jobfile
3925	echo " " >> $jobfile
3926	done
3927
3928	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3929	echo "cat > Makefile << \"%END%\"" >> $jobfile
3930	cat $source_catalog/Makefile >> $jobfile
3931	echo " " >> $jobfile
3932	echo "%END%" >> $jobfile
3933	echo " " >> $jobfile
3934
3935	echo "cd - > /dev/null" >> $jobfile
3936
3937	fi
3938
3939
3940	# ABSPEICHERN DER KONFIGURATIONSDATEI
3941	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3942	echo "cat > $config_file << \"%END%\"" >> $jobfile
3943	cat $config_file >> $jobfile
3944	echo "%END%" >> $jobfile
3945	echo " " >> $jobfile
3946
3947
3948	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3949	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3950	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3951	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3952	echo "%END%" >> $jobfile
3953	if [[ $host = lctit ]]
3954	then
3955	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3956	echo "mv mrun_new $mrun_script_name" >> $jobfile
3957	fi
3958	echo "chmod u+x $mrun_script_name" >> $jobfile
3959	echo "execute_mrun=true" >> $jobfile
3960	echo " " >> $jobfile
3961
3962	fi
3963
3964
3965	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3966	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3967	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3968	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3969	if [[ $do_remote = true ]]
3970	then
3971	(( i = 0 ))
3972	while (( i < iin ))
3973	do
3974	(( i = i + 1 ))
3975	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3976	if [[ "${transin[$i]}" = job ]]
3977	then
3978	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3979	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3980	echo " " >> $jobfile
3981	echo "%END%" >> $jobfile
3982	else
3983	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3984	fi
3985
3986	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3987	echo "if [[ \$? = 1 ]]" >> $jobfile
3988	echo "then" >> $jobfile
3989	echo " echo \" \" " >> $jobfile
3990	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3991	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3992	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3993	echo " execute_mrun=false" >> $jobfile
3994	echo "fi" >> $jobfile
3995	done
3996	fi
3997
3998	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3999	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4000	echo "LOCAL_PWD=$working_directory" >> $jobfile
4001	echo "export LOCAL_PWD" >> $jobfile
4002
4003	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4004	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4005	echo "export LOCAL_MRUN_PATH" >> $jobfile
4006
4007	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4008	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4009	then
4010	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4011	fi
4012
4013	# MRUN AUF ZIELRECHNER AUFRUFEN
4014	echo "set -x" >> $jobfile
4015	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4016
4017	echo 'ls -al; echo `pwd`' >> $jobfile
4018	echo "cd \$HOME" >> $jobfile
4019	echo "rm -rf $TEMPDIR" >> $jobfile
4020
4021
4022
4023
4024	# JOB PER SUBJOB STARTEN
4025	if [[ $silent = false ]]
4026	then
4027	printf "\n "
4028	else
4029	printf "\n\n"
4030	fi
4031
4032	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
4033	rm -rf $jobfile
4034
4035
4036	fi # ENDE REMOTE-TEIL
4037
4038
4039
4040	# ENDE DER PROZEDUR

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