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source: palm/trunk/SCRIPTS/mrun @ 204

Last change on this file since 204 was 204, checked in by raasch, 16 years ago
mrun for SGI-ICE restarts
Property svn:keywords set to `Id Rev`
File size: 149.3 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 204 2008-09-17 14:54:06Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156
157	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
158
159	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
160	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
161	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
162
163	AddFilenames=""
164	additional_conditions=""
165	add_source_path=""
166	afname=""
167	archive_save=true
168	archive_system=none
169	compiler_name=""
170	cond1=""
171	cond2=""
172	config_file=.mrun.config
173	cpp_opts=""
174	cpp_options=""
175	cpumax=0
176	cpurest=0
177	delete_temporary_catalog=true
178	do_batch=false
179	do_compile=true
180	do_remote=false
181	do_stagein=true
182	do_stageout=true
183	do_trace=false
184	email_notification=""
185	exclude=""
186	executable=""
187	execution_error=false
188	fimm=false
189	fname=test
190	fromhost=""
191	global_revision=""
192	group_number=none
193	host=""
194	host_file=""
195	hp=""
196	ignore_archive_error=false
197	input_list=""
198	interpreted_config_file=""
199	job_catalog="~/job_queue"
200	job_on_file=""
201	keep_data_from_previous_run=false
202	link_local_input=false
203	link_local_output=false
204	localhost_realname=$(hostname)
205	local_compile=false
206	locat=normal
207	mainprog=""
208	makefile=""
209	mc=$0
210	while [[ $(echo $mc \| grep -c "/") != 0 ]]
211	do
212	mc=`echo $mc \| cut -f2- -d"/"`
213	done
214	module_files=""
215	mrun_script_name=$mc
216	netcdf_inc=""
217	netcdf_lib=""
218	netcdf_support=false
219	node_usage=default
220	numprocs=""
221	OOPT=""
222	openmp=false
223	output_list=""
224	package_list=""
225	punkte="..........................................................."
226	queue=none
227	read_from_config=""
228	restart_run=false
229	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
230	if [[ $return_addres = 130.75.105.158 ]]
231	then
232	return_addres=172.20.25.41
233	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
234	fi
235	# if [[ $return_addres = 210.117.65.1 ]]
236	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
237	# then
238	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
239	# fi
240	return_password=""
241	return_username=$LOGNAME
242	remotecall=false
243	remote_username=""
244	run_coupled_model=false
245	run_mode=""
246	scirocco=false
247	store_on_archive_system=true
248	striche=" ----------------------------------------------------------------------------"
249	silent=false
250	source_list=""
251	source_path=SOURCE
252	tasks_per_node=""
253	threads_per_task=1
254	tmpcreate=false
255	tmp_data_catalog=""
256	transfer_problems=false
257	usern=$LOGNAME
258	working_directory=`pwd`
259	TOPT=""
260	XOPT=""
261	zeit=$( date \| cut -c 12-19 )
262
263	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
264	typeset -i cputime i ii iii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
265
266	typeset -R30 calltime
267	typeset -L20 spalte1
268	typeset -L40 spalte2
269	typeset -L60 spalte3
270	typeset -L35 string1=`date`
271	typeset -L12 string2=$usern
272	typeset -L12 string3=$localhost_realname
273	typeset -L12 string4
274	typeset -L12 string5
275	typeset -L30 version="MRUN 2.0 Rev$Rev: 204 $"
276
277
278
279	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
280	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
281
282	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
283	# EXPORTIERT WERDEN
284	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
285	export group_number input_list memory numprocs output_list queue run_mode
286
287
288
289	# FEHLERBEHANDLUNG
290	# BEI EXIT:
291	trap 'rm -rf $working_directory/tmp_mrun
292	if [[ $locat != localhost ]]
293	then
294	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
295	# then
296	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
297	#MRUN-calls on $localhost
298	#
299	#date and time user localhost remotehost termination mrun-command
300	#--------------------------------------------------------------------------------------------------------------------
301	#%STATEND%
302	# chmod 666 ${mrun_path}/statistik/mrun_statistik
303	# fi
304	#
305	# # EINTRAG IN DIE STATISTIK-DATEI
306	# string4=$host
307	# string5=$locat
308	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
309	# then
310	# if [[ $do_batch = true ]]
311	# then
312	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
313	# else
314	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
315	# fi
316	# fi
317	echo " " > /dev/null
318	fi
319
320	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
321	then
322
323	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
324	(( i = 0 ))
325	while (( i < iec ))
326	do
327	(( i = i + 1 ))
328	printf "\n *** Execution of ERROR-command:\n"
329	printf " >>> ${err_command[$i]}\n"
330	eval ${err_command[$i]}
331	done
332	if [[ -n $interpreted_config_file ]] then
333	rm -rf $interpreted_config_file
334	fi
335	if [[ -n .mrun_environment ]] then
336	rm -rf .mrun_environment
337	fi
338	if [[ $tmpcreate = true ]]
339	then
340	printf "\n *** Contents of \"$TEMPDIR\":\n"
341	ls -al; cd
342	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
343	fi
344	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
345	then
346	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
347	fi
348	printf "\n\n+++ MRUN killed \n\n"
349	elif [[ $locat != control_c ]]
350	then
351	printf "\n\n --> all actions finished\n\n"
352	printf " Bye, bye $usern !!\n\n"
353	fi' exit
354
355
356	# BEI TERMINAL-BREAK:
357	trap 'rm -rf $working_directory/tmp_mrun
358	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
359	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
360	then
361	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
362	fi
363	printf "\n+++ MRUN killed by \"^C\" \n\n"
364	locat=control_c
365	exit
366	' 2
367
368
369	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
370	# BEEN SET
371	if [[ "$PALM_BIN" = "" ]]
372	then
373	printf "\n +++ environment variable PALM_BIN has not been set"
374	printf "\n please set it to the directory where the PALM scripts are located"
375	locat=palm_bin; exit
376	fi
377	export PATH=$PALM_BIN:$PATH
378
379
380
381	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
382	# FUER FOLGEJOBS BENOETIGT WIRD
383	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y option
384	do
385	case $option in
386	(a) afname=$OPTARG;;
387	(A) store_on_archive_system=false; mc="$mc -A";;
388	(b) do_batch=true; mc="$mc -b";;
389	(B) delete_temporary_catalog=false; mc="$mc -B";;
390	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
391	(C) restart_run=true; mc="$mc -C";;
392	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
393	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
394	(F) job_on_file="-D"; mc="$mc -F";;
395	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
396	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
397	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
398	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
399	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
400	(I) ignore_archive_error=true; mc="$mc -I";;
401	(k) keep_data_from_previous_run=true; mc="$mc -k";;
402	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
403	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
404	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
405	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
406	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
407	(O) use_openmp=true; mc="$mc -O";;
408	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
409	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
410	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
411	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
412	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
413	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
414	(S) read_from_config=false; mc="$mc -S";;
415	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
416	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
417	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
418	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
419	(v) silent=true; mc="$mc -v";;
420	(x) do_trace=true;set -x; mc="$mc -x";;
421	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
422	(Y) run_coupled_model=true; mc="$mc -Y";;
423	(\?) printf "\n +++ unknown option $OPTARG \n"
424	printf "\n --> type \"$0 ?\" for available options \n"
425	locat=parameter;exit;;
426	esac
427	done
428
429
430	# EVTL. POSITIONSPARAMETER EINLESEN
431	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
432	shift OPTIND-1
433
434
435	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
436	if [[ "$1" = "?" ]]
437	then
438	(printf "\n *** mrun can be called as follows:\n"
439	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
440	printf "\n Description of available options:\n"
441	printf "\n Option Description Default-Value"
442	printf "\n -a base name of input files equiv. -d"
443	printf "\n -A no archiving when using file-attribute fl"
444	printf "\n -b batch-job on local machine ---"
445	printf "\n -B do not delete temporary directory at end ---"
446	printf "\n -c configuration file .mrun.config"
447	printf "\n -d base name of files attached to program test"
448	printf "\n -D preprocessor(cpp)-directives \"\" "
449	printf "\n -F create remote job file only ---"
450	printf "\n -h execution host $localhost_realname"
451	printf "\n -i INPUT control list \"\" "
452	printf "\n -I archiving errors of previous batch-jobs"
453	printf "\n will be ignored"
454	printf "\n -k keep data from previous run"
455	printf "\n -K additional conditions for controling"
456	printf "\n usage of conditional code and"
457	printf "\n env-variables in configuration file \"\" "
458	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
459	printf "\n -M Makefile name Makefile"
460	printf "\n -n node usage (shared/not_shared) depending on -h"
461	printf "\n -o OUTPUT control list \"\" "
462	printf "\n -O use OpenMP ---"
463	printf "\n -p software package list \"\" "
464	printf "\n -q queue \"$queue\" "
465	printf "\n -r run control list (combines -i -o) \"\" "
466	printf "\n -s filenames of routines to be compiled \"\" "
467	printf "\n must end with .f, .f90, .F, or .c !"
468	printf "\n use \"..\" for more than one file and wildcards"
469	printf "\n -s TEST compiles all files with w-permit"
470	printf "\n -S config file interpreted by shellscript ---"
471	printf "\n -t allowed cpu-time in seconds (batch) 0"
472	printf "\n -T tasks per node depending on -h"
473	printf "\n -u username on remote machine \"\" "
474	printf "\n -v no prompt for confirmation ---"
475	printf "\n -x tracing of mrun for debug purposes ---"
476	printf "\n -X # of processors (on parallel machines) 1"
477	printf "\n -Y run coupled model ---"
478	printf "\n "
479	printf "\n Possible values of positional parameter <modus>:"
480	printf "\n \"?\" - this outline \n\n") \| more
481	exit
482	elif [[ "$1" != "" ]]
483	then
484	printf "\n +++ positional parameter $1 unknown \n"
485	locat=parameter; exit
486	fi
487
488
489
490	# KURZE STARTMELDUNG
491	printf "\n*** $version "
492	printf "\n will be executed. Please wait ..."
493
494
495
496	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
497	if [[ ! -f $config_file ]]
498	then
499	printf "\n\n +++ configuration file: "
500	printf "\n $config_file"
501	printf "\n does not exist"
502	locat=connect; exit
503	fi
504
505
506	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
507	line=""
508	grep "%host_identifier" $config_file > tmp_mrun
509	while read line
510	do
511	if [[ "$line" != "" \|\| $(echo $line \| cut -c1) != "#" ]]
512	then
513	HOSTNAME=`echo $line \| cut -d" " -s -f2`
514	host_identifier=`echo $line \| cut -d" " -s -f3`
515	if [[ $localhost_realname = $HOSTNAME ]]
516	then
517	localhost=$host_identifier
518	break
519	fi
520	fi
521	done < tmp_mrun
522
523	if [[ "$localhost" = "" ]]
524	then
525	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
526	printf "\n for local host \"$localhost_realname\"."
527	printf "\n Please add line"
528	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
529	printf "\n to the configuration file."
530	locat=localhost; exit
531	fi
532
533
534
535	# HOSTSPEZIFISCHE VARIABLEN SETZEN
536	case $localhost_realname in
537	(breg-en0\|berni-en0) archive_system=tivoli;;
538	(cs*) archive_system=ut;;
539	(fimm.bccs.uib.no) fimm=true;;
540	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
541	(hreg-en0\|hanni-en0) archive_system=tivoli;;
542	(scirocco) scirocco=true;;
543	esac
544
545
546
547	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
548	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
549	[[ "$afname" = "" ]] && afname=$fname
550
551
552	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
553	if [[ "$run_mode" != "" ]]
554	then
555	input_list="$input_list $run_mode"
556	output_list="$output_list $run_mode"
557	fi
558
559
560	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
561	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
562	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
563	# STARTET)
564	if [[ "$fromhost" = "" ]]
565	then
566	fromhost=$localhost
567	fi
568
569
570	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
571	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
572	then
573	source_list=TEST
574	local_compile=true
575	host=$localhost
576	fi
577
578
579	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
580	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
581	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
582	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
583	if [[ -n $host && "$host" != $localhost ]]
584	then
585	do_batch=true
586	do_remote=true
587	case $host in
588	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics) true;;
589	(*) printf "\n"
590	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
591	printf "\n is not available"
592	locat=nqs; (( iec = 0 )); exit;;
593	esac
594	else
595	host=$localhost
596	fi
597
598
599	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
600	if [[ -n $additional_conditions ]]
601	then
602	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
603	cond1=`echo $additional_conditions \| cut -d" " -f1`
604	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
605	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
606	if [[ -n $dummy ]]
607	then
608	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
609	locat=options; exit
610	fi
611	fi
612
613
614	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
615	# ARCHIVIERUNG FEHLGESCHLAGEN IST
616	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
617	then
618	if [[ $ignore_archive_error = false ]]
619	then
620	printf "\n +++ data archiving of previous run failed"
621	printf "\n see directory \~/job_queue on remote machine"
622	locat=archive; exit
623	else
624	printf "\n +++ warning: data archiving in a previous run failed"
625	printf "\n MRUN continues, trying to get backup copy"
626	fi
627	fi
628
629
630
631	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
632	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
633	if [[ "$read_from_config" = false ]]
634	then
635
636	[[ $silent = false ]] && printf "\n Reading the configuration file... "
637	while read zeile
638	do
639	[[ $silent = false ]] && printf "."
640
641
642	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
643	# ERSETZEN
644	eval zeile=\"$zeile\"
645
646
647	# INTERPRETATION DER ZEILE
648	if [[ "$(echo $zeile)" = "" ]]
649	then
650	# LEERZEILE, KEINE AKTION
651	continue
652
653	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
654	then
655
656	# ZEILE IST KOMMENTARZEILE
657	true
658
659	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
660	then
661
662	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
663	zeile=$(echo $zeile \| cut -c2-)
664	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
665	var=`echo $zeile \| cut -d" " -f1`
666	value=`echo $zeile \| cut -d" " -s -f2`
667	for_host=`echo $zeile \| cut -d" " -s -f3`
668	for_cond1=`echo $zeile \| cut -d" " -s -f4`
669	for_cond2=`echo $zeile \| cut -d" " -s -f5`
670
671	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
672	then
673
674	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
675	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
676	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
677
678
679	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
680	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
681	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
682	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
683	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
684	# KONFIGURATIONSDATEI
685	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
686	then
687	eval $var=\$value
688
689	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
690	if [[ $do_trace = true ]]
691	then
692	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
693	fi
694	fi
695
696	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
697	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
698	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
699	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
700	if [[ $var = host ]]
701	then
702	if [[ -n $host && "$host" != $localhost ]]
703	then
704	do_batch=true
705	do_remote=true
706	case $host in
707	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics) true;;
708	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
709	printf "\n is not available"
710	locat=nqs; exit;;
711	esac
712	else
713	host=$localhost
714	fi
715	fi
716
717	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
718	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
719	# DEN PROGRAMMEN BENOETIGT WERDEN
720	export $var
721	fi
722
723
724
725
726	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
727	then
728
729	# ZEILE DEFINIERT ERROR-KOMMANDO
730	(( iec = iec + 1 ))
731	zeile=$(echo $zeile \| cut -c4-)
732	err_command[$iec]="$zeile"
733
734	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
735	then
736
737	# ZEILE DEFINIERT INPUT-KOMMANDO
738	(( iic = iic + 1 ))
739	zeile=$(echo $zeile \| cut -c4-)
740	in_command[$iic]="$zeile"
741
742	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
743	then
744
745	# ZEILE DEFINIERT OUTPUT-KOMMANDO
746	(( ioc = ioc + 1 ))
747	zeile=$(echo $zeile \| cut -c4-)
748	out_command[$ioc]="$zeile"
749
750	else
751
752	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
753	# s2a: in/out - Feld
754	# s2b: loc - Feld (optional)
755	# s2c: tr/ar - Feld (optional)
756	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
757	s1=`echo $zeile \| cut -d" " -f1`
758	s2=`echo $zeile \| cut -d" " -s -f2`
759	s2a=$(echo $s2 \| cut -d":" -f1)
760	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
761	then
762	s2b=""
763	s2c=""
764	else
765	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
766	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
767	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
768	fi
769	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
770	s3=`echo $zeile \| cut -d" " -f3`
771	s4=`echo $zeile \| cut -d" " -s -f4`
772	s5=`echo $zeile \| cut -d" " -s -f5`
773	s6=`echo $zeile \| cut -d" " -s -f6`
774
775
776	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
777	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
778	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
779	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
780	# HANDEN SEIN MUSS (D.H. s2b = loc)
781	IFSALT="$IFS"; IFS="$IFS:"
782	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
783	then
784	found=false
785	for actual in $input_list
786	do
787	for formal in $s3
788	do
789	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
790	done
791	done
792	if [[ $found = true ]]
793	then
794	(( iin = iin + 1 ))
795	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
796	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
797	extin[$iin]=$s6
798	fi
799	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
800	then
801	found=false
802	for actual in $output_list
803	do
804	for formal in $s3
805	do
806	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
807	done
808	done
809	if [[ $found = true ]]
810	then
811	(( iout = iout + 1 ))
812	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
813	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
814	fi
815	elif [[ "$s2a" != in && "$s2a" != out ]]
816	then
817	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
818	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
819	locat=connect; exit
820	fi
821	IFS="$IFSALT"
822	fi
823	done < $config_file
824
825	else
826
827
828	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
829	[[ $silent = false ]] && printf "..."
830	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
831	export interpreted_config_file=.icf.$RANDOM
832
833
834
835	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
836	# VERFUEGUNG STELLEN
837	cat > .mrun_environment << %%END%%
838	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
839	config_file = '$config_file', do_remote = '$do_remote',
840	do_trace = '$do_trace', host = '$host',
841	input_list = '$input_list', icf = '$interpreted_config_file',
842	localhost = '$localhost', output_list = '$output_list' /
843
844	%%END%%
845
846	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
847	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
848	mrun_memory=$memory
849	mrun_group_number=$group_number
850	mrun_cpumax=$cpumax
851	mrun_numprocs=$numprocs
852
853	if [[ $localhost_realname = "gate" ]]
854	then
855	interpret_config_gate.x
856	else
857	interpret_config.x
858	fi
859	rm .mrun_environment
860
861
862	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
863	chmod u+x $interpreted_config_file
864	export PATH=$PATH:.
865	. $interpreted_config_file
866	rm $interpreted_config_file
867
868
869	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
870	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
871	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
872	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
873	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
874
875	fi
876
877
878	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
879	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
880	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
881	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
882	if [[ "$SOURCES_COMPLETE" = "" ]]
883	then
884
885	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
886	# VEREINBART WURDE
887	source_path=""
888	line=""
889	grep "%source_path" $config_file > tmp_mrun
890	while read line
891	do
892	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
893	then
894	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
895	then
896	global_source_path=`echo $line \| cut -d" " -f2`
897	fi
898	fi
899	done < tmp_mrun
900
901	line=""
902	found=false
903	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
904	while read line
905	do
906	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
907	then
908	if [[ $found = true ]]
909	then
910	printf "\n\n +++ more than one source path found in configuration file"
911	printf "\n for local host \"$localhost\" "
912	locat=source_path; exit
913	fi
914	source_path=`echo $line \| cut -d" " -f2`
915	found=true
916	fi
917	done < tmp_mrun
918	rm tmp_mrun
919
920	if [[ "$source_path" = "" ]]
921	then
922	if [[ "$global_source_path" != "" ]]
923	then
924	source_path=$global_source_path
925	else
926	printf "\n\n +++ no source path found in configuration file"
927	printf "\n for local host \"$localhost\" "
928	locat=source_path; exit
929	fi
930	fi
931	eval source_path=$source_path
932
933	if [[ ! -d $source_path ]]
934	then
935	printf "\n\n +++ source path \"$source_path\" on local host"
936	printf "\n \"$localhost\" does not exist"
937	locat=source_path; exit
938	fi
939
940	fi
941
942
943	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
944	# DURCH OPTION -G MITGETEILT)
945	if [[ "$global_revision" = "" ]]
946	then
947	global_revision=`svnversion $source_path 2>/dev/null`
948	global_revision="Rev: $global_revision"
949	fi
950
951
952	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
953	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
954	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
955	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
956	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
957	if [[ -n $host && "$host" != $localhost ]]
958	then
959	do_batch=true
960	do_remote=true
961	case $host in
962	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics) true;;
963	(*) printf "\n"
964	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
965	printf "\n is not available"
966	locat=nqs; (( iec = 0 )); exit;;
967	esac
968	else
969	host=$localhost
970	fi
971
972
973	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
974	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
975	then
976
977	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
978	if [[ ! -n $numprocs ]]
979	then
980	printf "\n"
981	printf "\n +++ option \"-K parallel\" requires additional specification"
982	printf "\n of the number of processors to be used by"
983	printf "\n mrun-option \"-X\" or by environment-variable"
984	printf "\n \"numprocs\" in the configuration file"
985	locat=numprocs; (( iec = 0 )); exit
986	fi
987
988	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
989	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
990	# GESAMTPROZESSORANZAHL IST
991	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
992	then
993	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
994	(( ival = $tasks_per_node ))
995	(( pes = numprocs ))
996	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
997	# then
998	# (( pes = pes - 1 ))
999	# fi
1000	(( ii = pes / ival ))
1001	if (( pes - ii * ival > 0 ))
1002	then
1003	printf "\n"
1004	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1005	printf "\n divisor of the total number of processors (option \"-X\")"
1006	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1007	locat=tasks_per_node; (( iec = 0 )); exit
1008	fi
1009	fi
1010
1011	# IBMY HAT NUR EINEN KNOTEN
1012	if [[ $host = ibmy ]]
1013	then
1014	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1015	then
1016	printf "\n"
1017	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1018	printf "\n total number of processors (option \"-X\")"
1019	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1020	locat=tasks_per_node; (( iec = 0 )); exit
1021	fi
1022	fi
1023
1024	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1025	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1026	if [[ $use_openmp = true ]]
1027	then
1028	threads_per_task=$tasks_per_node
1029	tasks_per_node=1
1030	fi
1031	OOPT="-O $threads_per_task"
1032	TOPT="-T $tasks_per_node"
1033
1034	# GESAMTZAHL DER KNOTEN BESTIMMEN
1035	if [[ "$tasks_per_node" != "" ]]
1036	then
1037	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1038	fi
1039
1040	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1041	# SETZEN
1042	if [[ $node_usage = default ]]
1043	then
1044	if [[ $host = ibms ]]
1045	then
1046	node_usage=shared
1047	elif [[ $host = lctit ]]
1048	then
1049	node_usage=sla3
1050	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1051	then
1052	node_usage=singlejob
1053	else
1054	node_usage=not_shared
1055	fi
1056	fi
1057
1058	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
1059	then
1060	printf "\n"
1061	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1062	printf "\n \"shared\" or \"not_shared\""
1063	locat=tasks_per_node; (( iec = 0 )); exit
1064	fi
1065
1066	fi
1067
1068	# PRUEFEN, OB HOSTFILE EXISTIERT
1069	if [[ -n $hostfile ]]
1070	then
1071	if [[ ! -f $hostfile ]]
1072	then
1073	printf "\n"
1074	printf "\n +++ hostfile \"$hostfile\" does not exist"
1075	locat=hostfile; exit
1076	fi
1077	fi
1078
1079	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1080	if [[ $host = ibmy && $do_remote = false ]]
1081	then
1082	if [[ ! -f $HOME/.rhosts ]]
1083	then
1084	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1085	printf "\n\n *** file:"
1086	printf "\n $HOME/.rhosts"
1087	printf "\n was created\n"
1088	fi
1089	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1090	then
1091	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1092	printf "\n\n *** file:"
1093	printf "\n $HOME/.rhosts"
1094	printf "\n was extended by the name of the current host\n"
1095	fi
1096	fi
1097
1098
1099
1100	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1101	if [[ $queue = none ]]
1102	then
1103	case $host in
1104	(ibmb) if [[ $node_usage = shared ]]
1105	then
1106	queue=cshare
1107	else
1108	queue=csolo
1109	fi;;
1110	(ibmh) if [[ $node_usage = shared ]]
1111	then
1112	queue=cshare
1113	else
1114	queue=csolo
1115	fi;;
1116	(ibmy) queue=parallel;;
1117	(lcsgib) queue=bigq;;
1118	(lcsgih) queue=bigq;;
1119	(lctit) queue=sla3;;
1120	(nech) queue=none;;
1121	(neck) queue=P;;
1122	(unics) queue=unics;;
1123	esac
1124	fi
1125
1126
1127	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1128	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1129	# ERMITTELN
1130	(( i = 0 ))
1131	while (( i < iin ))
1132	do
1133	(( i = i + 1 ))
1134	(( maxcycle = 0 ))
1135
1136	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1137	if [[ "${actionin[$i]}" = di ]]
1138	then
1139	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1140	# REM-MASCHINE AUSWERTEN
1141	eval filename=${pathin[$i]}/${endin[$i]}
1142	else
1143	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1144	# REM-MASCHINE AUSWERTEN
1145	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1146	fi
1147
1148	# PRUEFEN AUF VORHANDENSEIN
1149	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1150	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1151	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1152	then
1153	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1154	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1155	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1156	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1157	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1158	if [[ "${transin[$i]}" != "locopt" ]]
1159	then
1160	printf "\n\n +++ INPUT-file: "
1161	if [[ "${extin[$i]}" = "" ]]
1162	then
1163	printf "\n $filename"
1164	else
1165	printf "\n $filename.${extin[$i]}"
1166	fi
1167	printf "\n does not exist\n"
1168	locat=input; exit
1169	else
1170	transin[$i]="unavailable"
1171	fi
1172	else
1173
1174	# ZYKLUSNUMMER FESTSTELLEN
1175	ls -1 -d $filename > filelist 2>/dev/null
1176	ls -1 -d $filename.* >> filelist 2>/dev/null
1177	while read zeile
1178	do
1179	cycle=$(print $zeile \| cut -f2 -d".")
1180	if [[ "$cycle" = "$zeile" ]]
1181	then
1182	(( icycle = 0 ))
1183	elif [[ "$cycle" = "${extin[$i]}" ]]
1184	then
1185	(( icycle = 0 ))
1186	else
1187	(( icycle = $cycle ))
1188	fi
1189	if (( icycle > maxcycle ))
1190	then
1191	(( maxcycle = icycle ))
1192	file_to_be_used=$zeile
1193	fi
1194	done <filelist
1195	rm filelist
1196
1197	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1198	if (( maxcycle > 0 ))
1199	then
1200	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1201	then
1202	filename=${filename}.$maxcycle.${extin[$i]}
1203	else
1204	filename=${filename}.$maxcycle
1205	fi
1206	else
1207	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1208	then
1209	filename=${filename}.${extin[$i]}
1210	fi
1211	fi
1212
1213	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1214	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1215	absnamein[$i]=$filename
1216	if (( maxcycle > 0 ))
1217	then
1218	if [[ "${actionin[$i]}" = di ]]
1219	then
1220	frelin[$i]=${endin[$i]}.$maxcycle
1221	else
1222	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1223	fi
1224	else
1225	if [[ "${actionin[$i]}" = di ]]
1226	then
1227	frelin[$i]=${endin[$i]}
1228	else
1229	frelin[$i]=${afname}${endin[$i]}
1230	fi
1231	fi
1232
1233	fi
1234	done
1235
1236
1237	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1238	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1239	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1240	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1241	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1242	(( i = 0 ))
1243	while (( i < iout ))
1244	do
1245	(( i = i + 1 ))
1246	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1247	then
1248	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1249	then
1250	actionout[$i]=""
1251	elif [[ "${actionout[$i]}" = tra ]]
1252	then
1253	actionout[$i]=a
1254	fi
1255	(( maxcycle = 0 ))
1256	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1257	eval catalogname=${pathout[$i]}
1258	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1259	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1260	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1261	then
1262
1263	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1264	if cat /dev/null > $filename
1265	then
1266	rm $filename
1267	else
1268
1269	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1270	if [[ ! -d $catalogname ]]
1271	then
1272	if mkdir -p $catalogname
1273	then
1274	printf "\n\n *** directory:"
1275	printf "\n $catalogname"
1276	printf "\n was created\n"
1277	else
1278	printf "\n\n +++ OUTPUT-file:"
1279	printf "\n $filename"
1280	printf "\n cannot be created, because directory does not exist"
1281	printf "\n and cannot be created either"
1282	printf "\n"
1283	locat=output ; exit
1284	fi 2>/dev/null
1285	else
1286	printf "\n\n +++ OUTPUT-file:"
1287	printf "\n $filename"
1288	printf "\n cannot be created, although directory exists"
1289	printf "\n"
1290	locat=output ; exit
1291	fi
1292	fi 2>/dev/null
1293	else
1294
1295	# ZYKLUSNUMMER FESTSTELLEN
1296	ls -1 -d $filename > filelist 2>/dev/null
1297	ls -1 -d $filename.* >> filelist 2>/dev/null
1298	while read zeile
1299	do
1300	cycle=$(print $zeile \| cut -f2 -d".")
1301	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1302	then
1303	(( icycle = 1 ))
1304	else
1305	(( icycle = $cycle + 1 ))
1306	fi
1307	if (( icycle > maxcycle ))
1308	then
1309	(( maxcycle = icycle ))
1310	fi
1311	done <filelist
1312	rm filelist
1313	fi
1314
1315	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1316	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1317	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1318	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1319	if [[ "${actionout[$i]}" != a ]]
1320	then
1321	if (( maxcycle > 0 ))
1322	then
1323	filename=${filename}.$maxcycle
1324	if cat /dev/null > $filename
1325	then
1326	rm $filename
1327	else
1328	printf "\n +++ OUTPUT-file:"
1329	printf "\n $filename"
1330	printf "\n cannot be created"
1331	locat=output ; exit
1332	fi
1333	fi
1334	else
1335	(( maxcycle = maxcycle - 1 ))
1336	if (( maxcycle > 0 ))
1337	then
1338	filename=${filename}.$maxcycle
1339	fi
1340	fi
1341
1342	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1343	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1344	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1345	pathout[$i]=$filename
1346	if (( maxcycle > 0 ))
1347	then
1348	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1349	else
1350	frelout[$i]=${fname}${endout[$i]}
1351	fi
1352
1353	fi
1354	done
1355
1356
1357	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1358	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1359	then
1360	if [[ "$dvrp_inc" = "" ]]
1361	then
1362	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
1363	printf "\n This is required for the dvrp_graphics package.\n"
1364	locat=dvrp; exit
1365	fi
1366	if [[ "$dvrp_lib" = "" ]]
1367	then
1368	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
1369	printf "\n This is required for the dvrp_graphics package.\n"
1370	locat=dvrp; exit
1371	fi
1372	fi
1373
1374
1375	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1376	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1377	# UEBERSETZT ZU WERDEN)
1378	if [[ "$mainprog" = "" && "$executable" = "" ]]
1379	then
1380	printf "\n +++ neither main program nor executable defined"
1381	locat=source; exit
1382	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1383	then
1384	printf "\n +++ main program as well as executable defined"
1385	locat=source; exit
1386	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1387	then
1388	do_compile=false
1389	fi
1390
1391
1392	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1393	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1394	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1395	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1396	then
1397	rm -rf SOURCES_FOR_RUN_$fname
1398	mkdir SOURCES_FOR_RUN_$fname
1399	fi
1400
1401
1402	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1403	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1404	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1405	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1406	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1407	then
1408
1409	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1410	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1411
1412
1413	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1414	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1415	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1416	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1417	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1418	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1419	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1420	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1421	# GESAMMELT
1422	if [[ "$source_list" = WRITE_PERMIT ]]
1423	then
1424
1425	source_list=""
1426	cd $source_path
1427
1428
1429	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1430	Names=$(ls -1 *.f90 2>&1)
1431	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1432	Names=$(ls -1 *.F90 2>&1)
1433	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1434	Names=$(ls -1 *.F 2>&1)
1435	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1436	Names=$(ls -1 *.f 2>&1)
1437	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1438	Names=$(ls -1 *.c 2>&1)
1439	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1440
1441
1442	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1443	for dateiname in $Filenames
1444	do
1445	if [[ -w $dateiname ]]
1446	then
1447	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1448	then
1449	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1450	source_list=$source_list"$dateiname "
1451	fi
1452	fi
1453	done
1454
1455	cd - > /dev/null
1456
1457
1458	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1459	then
1460
1461	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1462	source_list=""
1463	cd $source_path
1464
1465
1466	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1467	if [[ ! -d .svn ]]
1468	then
1469	printf "\n\n +++ source directory"
1470	printf "\n \"$source_path\" "
1471	printf "\n is not under control of \"subversion\"."
1472	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1473	fi
1474
1475
1476	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1477	Filenames=""
1478	svn status > tmp_mrun
1479	while read line
1480	do
1481	firstc=`echo $line \| cut -c1`
1482	if [[ $firstc = M \|\| $firstc = "?" ]]
1483	then
1484	Name=`echo "$line" \| cut -c8-`
1485	extension=`echo $Name \| cut -d. -f2`
1486	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1487	then
1488	Filenames="$Filenames "$Name
1489	fi
1490	fi
1491	done < tmp_mrun
1492
1493
1494	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1495	for dateiname in $Filenames
1496	do
1497	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1498	source_list=$source_list"$dateiname "
1499	done
1500
1501	cd - > /dev/null
1502
1503
1504	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1505	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1506	# VORHANDEN
1507	elif [[ "$source_list" != "" && $restart_run != true ]]
1508	then
1509
1510	cd $source_path
1511
1512	for filename in $source_list
1513	do
1514
1515	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1516	if [[ $(print $filename \| grep -c "/") != 0 ]]
1517	then
1518	printf "\n +++ source code file: $filename"
1519	printf "\n must not contain (\"/\") "
1520	locat=source; exit
1521	fi
1522
1523	if [[ ! -f $filename ]]
1524	then
1525	printf "\n +++ source code file: $filename"
1526	printf "\n does not exist"
1527	locat=source; exit
1528	else
1529	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1530	fi
1531
1532	done
1533
1534	cd - > /dev/null
1535
1536	fi
1537
1538
1539	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1540	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1541	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1542	if [[ $restart_run != true ]]
1543	then
1544
1545	if [[ ! -f "$source_path/$mainprog" ]]
1546	then
1547	printf "\n\n +++ main program: $mainprog"
1548	printf "\n does not exist in source directory"
1549	printf "\n \"$source_path\"\n"
1550	locat=source; exit
1551	else
1552	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1553	then
1554	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1555	source_list=${mainprog}" $source_list"
1556	fi
1557	fi
1558	fi
1559
1560
1561	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1562	if [[ $restart_run != true && "$add_source_path" != "" ]]
1563	then
1564
1565	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1566	if [[ ! -d $add_source_path ]]
1567	then
1568	printf "\n\n +++ WARNING: additional source code directory"
1569	printf "\n \"$add_source_path\" "
1570	printf "\n does not exist or is not a directory."
1571	printf "\n No source code will be used from this directory!\n"
1572	add_source_path=""
1573	sleep 3
1574	else
1575
1576	cd $add_source_path
1577
1578	Names=$(ls -1 *.f90 2>&1)
1579	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1580	Names=$(ls -1 *.F90 2>&1)
1581	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1582	Names=$(ls -1 *.F 2>&1)
1583	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1584	Names=$(ls -1 *.f 2>&1)
1585	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1586	Names=$(ls -1 *.c 2>&1)
1587	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1588
1589	cd - > /dev/null
1590	cd SOURCES_FOR_RUN_$fname
1591
1592	for dateiname in $AddFilenames
1593	do
1594	if [[ -f $dateiname ]]
1595	then
1596	printf "\n +++ source code file \"$dateiname\" found in additional"
1597	printf "\n source code directory \"$add_source_path\" "
1598	printf "\n as well as in directory \"$source_path\"."
1599	locat=source; exit
1600	fi
1601
1602	cp $add_source_path/$dateiname .
1603	source_list="$source_list $dateiname"
1604
1605	# Default User-Interface von der Liste entfernen, falls Datei
1606	# ein User-Interface enthaelt
1607	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1608	then
1609	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1610	then
1611	rm -rf user_interface.f90
1612	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1613	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1614	printf "\n since a user-interface is found in file"
1615	printf "\n \"$add_source_path/$dateiname\" \n"
1616	sleep 3
1617	else
1618	printf "\n\n *** user-interface file \"$dateiname\" "
1619	printf "\n added to the files to be translated \n"
1620	sleep 3
1621	fi
1622	fi
1623	done
1624
1625	cd - > /dev/null
1626	fi
1627	fi
1628
1629
1630	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1631	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1632	if [[ $restart_run != true && -n $package_list ]]
1633	then
1634
1635	cd $source_path
1636
1637	for package in $package_list
1638	do
1639
1640	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1641
1642	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1643	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1644	# LIEFERT
1645	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1646
1647
1648	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1649	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1650	for source_list_name in $package_source_list
1651	do
1652	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1653	then
1654
1655	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1656	ending=`echo $source_list_name \| cut -f2 -d.`
1657	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1658	then
1659	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1660	source_list="$source_list $source_list_name"
1661	fi
1662	fi
1663	done
1664	done
1665
1666	cd - > /dev/null
1667	fi
1668
1669
1670	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1671	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1672	if [[ "$restart_run" != true ]]
1673	then
1674	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1675	if [[ ! -f $makefile ]]
1676	then
1677	printf "\n +++ file \"$makefile\" does not exist"
1678	locat=make; exit
1679	else
1680	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1681	fi
1682	fi
1683
1684	fi # do_compile=true
1685
1686
1687	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1688	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1689	if [[ $do_compile = true ]]
1690	then
1691
1692	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1693	# ZUSAMMENSETZEN
1694	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1695	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1696	then
1697	cpp_options="${cpp_options},-D__ibm=__ibm"
1698	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1699	then
1700	cpp_options="$cpp_options -D__nec"
1701	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1702	then
1703	cpp_options="$cpp_options -D__lc"
1704	else
1705	cpp_options="$cpp_options -D__$localhost"
1706	fi
1707
1708	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1709	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1710	then
1711	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1712	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1713	else
1714	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1715	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1716	fi
1717
1718	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1719	if [[ -n $package_list ]]
1720	then
1721	for package in $package_list
1722	do
1723	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1724	then
1725	if [[ $package != "dvrp_graphics+1PE" ]]
1726	then
1727	cpp_options="${cpp_options},-D__$package=__$package"
1728	else
1729	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1730	export use_seperate_pe_for_dvrp_output=true
1731	fi
1732	else
1733	if [[ $package != "dvrp_graphics+1PE" ]]
1734	then
1735	cpp_options="$cpp_options -D__$package"
1736	else
1737	cpp_options="$cpp_options -D__dvrp_graphics"
1738	export use_seperate_pe_for_dvrp_output=true
1739	fi
1740	fi
1741	done
1742	fi
1743
1744	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1745	if [[ -n $cpp_opts ]]
1746	then
1747	for popts in $cpp_opts
1748	do
1749	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1750	then
1751	cpp_options="${cpp_options},-D__$popts=__$popts"
1752	else
1753	cpp_options="$cpp_options -D__$popts"
1754	fi
1755	done
1756	fi
1757
1758	else
1759
1760
1761	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1762	if [[ $do_remote = false ]]
1763	then
1764	if [[ ! -f $executable ]]
1765	then
1766	printf "\n +++ executable file: $executable"
1767	printf "\n does not exist"
1768	locat=executable; exit
1769	fi
1770	fi
1771	fi
1772
1773
1774	# JOBMODUS FESTSTELLEN
1775	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1776	then
1777	jobmo=BATCH
1778	else
1779	jobmo=INTERACTIVE
1780	fi
1781
1782
1783	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1784	# DURCH BENUTZER ANDERWEITIG VEREINBART
1785	if [[ "$compiler_name" = "" ]]
1786	then
1787
1788	printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\""
1789	locat=compiler_name; exit
1790
1791	fi
1792
1793
1794	# COMPILER AUF NECK UEBERSCHREIBEN
1795	[[ $localhost = neck ]] && compiler_name=mpif90
1796
1797
1798
1799	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1800	kennung=$RANDOM
1801	if [[ "$tmp_user_catalog" = "" ]]
1802	then
1803	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1804	then
1805	tmp_user_catalog=$TMPDIR
1806	elif [[ $localhost = nech ]]
1807	then
1808	tmp_user_catalog=$WRKSHR
1809	else
1810	tmp_user_catalog=/tmp
1811	fi
1812	fi
1813	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1814
1815
1816	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1817	# BESTIMMEN
1818	if [[ "$tmp_data_catalog" = "" ]]
1819	then
1820	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1821	then
1822	tmp_data_catalog=$WORK/mrun_restart_data
1823	elif [[ $localhost = nech ]]
1824	then
1825	tmp_data_catalog=$WRKSHR/mrun_restart_data
1826	else
1827	tmp_data_catalog=/tmp/mrun_restart_data
1828	fi
1829	fi
1830
1831
1832	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1833	# ERSETZEN
1834	if [[ $do_remote = false && $do_compile = true ]]
1835	then
1836	eval fopts=\"$fopts\"
1837	eval lopts=\"$lopts\"
1838	fi
1839
1840
1841
1842	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1843	fopts="$fopts $netcdf_inc $dvrp_inc"
1844	lopts="$lopts $netcdf_lib $dvrp_lib"
1845	ROPTS="$ropts"
1846	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1847	then
1848	XOPT="-X $numprocs"
1849	fi
1850
1851
1852
1853	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1854	# GRAMM BENOETIGT
1855	done=false
1856	while [[ $done = false ]]
1857	do
1858	cputime=$cpumax
1859	if (( $cputime == 0 ))
1860	then
1861	printf "\n +++ cpu-time is undefined"
1862	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1863	printf "\n >>> "
1864	read cputime 1>/dev/null 2>&1
1865	else
1866	done=true
1867	fi
1868	cpumax=$cputime
1869	done
1870
1871	(( minuten = cputime / 60 ))
1872	(( sekunden = cputime - minuten * 60 ))
1873
1874
1875	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1876	if [[ $do_batch = true ]]
1877	then
1878	done=false
1879	while [[ $done = false ]]
1880	do
1881	if (( memory == 0 ))
1882	then
1883	printf "\n +++ memory demand is undefined"
1884	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1885	printf "\n >>> "
1886	read memory 1>/dev/null 2>&1
1887	else
1888	done=true
1889	fi
1890	done
1891	fi
1892
1893
1894	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1895	if [[ $do_remote = true && -z $remote_username ]]
1896	then
1897	while [[ -z $remote_username ]]
1898	do
1899	printf "\n +++ username on remote host \"$host\" is undefined"
1900	printf "\n >>> Please type username:"
1901	printf "\n >>> "
1902	read remote_username
1903	done
1904	mc="$mc -u$remote_username"
1905	fi
1906
1907	###########################################################################
1908	# HEADER-AUSGABE
1909	###########################################################################
1910
1911
1912	calltime=$(date)
1913	printf "\n"
1914	# [[ $silent = false ]] && clear
1915	printf "#--------------------------------------------------------------# \n"
1916	printf "\| $version$calltime \| \n"
1917	printf "\| \| \n"
1918	spalte1="called on:"; spalte2=$localhost_realname
1919	printf "\| $spalte1$spalte2 \| \n"
1920	if [[ $local_compile = false ]]
1921	then
1922	if [[ $do_remote = true ]]
1923	then
1924	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1925	else
1926	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1927	fi
1928	else
1929	spalte1="compiling test only!"; spalte2=""
1930	fi
1931	printf "\| $spalte1$spalte2 \| \n"
1932	if [[ -n $numprocs ]]
1933	then
1934	spalte1="number of PEs:"; spalte2=$numprocs
1935	printf "\| $spalte1$spalte2 \| \n"
1936	fi
1937	if [[ -n $tasks_per_node ]]
1938	then
1939	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1940	printf "\| $spalte1$spalte2 \| \n"
1941	fi
1942	if [[ $threads_per_task != 1 ]]
1943	then
1944	spalte1="threads per task:"; spalte2="$threads_per_task"
1945	printf "\| $spalte1$spalte2 \| \n"
1946	fi
1947	printf "\| \| \n"
1948	if [[ $do_compile = true ]]
1949	then
1950	spalte1=cpp-directives:; spalte2=$cpp_options
1951	printf "\| $spalte1$spalte2 \| \n"
1952	zeile=$(echo "$cpp_options" \| cut -c41-)
1953	while [[ "$zeile" != "" ]]
1954	do
1955	spalte1=""
1956	spalte2=$zeile
1957	printf "\| $spalte1$spalte2 \| \n"
1958	zeile=$(echo "$zeile" \| cut -c41-)
1959	done
1960
1961	spalte1=compiler-options:; spalte2="$fopts"
1962	printf "\| $spalte1$spalte2 \| \n"
1963	zeile=$(echo "$fopts" \| cut -c41-)
1964	while [[ "$zeile" != "" ]]
1965	do
1966	spalte1=""
1967	spalte2=$zeile
1968	printf "\| $spalte1$spalte2 \| \n"
1969	zeile=$(echo "$zeile" \| cut -c41-)
1970	done
1971
1972	spalte1=linker-options:; spalte2=$lopts
1973	printf "\| $spalte1$spalte2 \| \n"
1974	zeile=$(echo "$lopts" \| cut -c41-)
1975	while [[ "$zeile" != "" ]]
1976	do
1977	spalte1=""
1978	spalte2=$zeile
1979	printf "\| $spalte1$spalte2 \| \n"
1980	zeile=$(echo "$zeile" \| cut -c41-)
1981	done
1982
1983	spalte1="main program":; spalte2=$mainprog
1984	printf "\| $spalte1$spalte2 \| \n"
1985	else
1986	spalte1=executable:; spalte2=$executable
1987	printf "\| $spalte1$spalte2 \| \n"
1988	fi
1989	printf "\| \| \n"
1990	spalte1="base name of files":; spalte2=$fname
1991	printf "\| $spalte1$spalte2 \| \n"
1992	if [[ $fname != $afname ]]
1993	then
1994	spalte1="base name of input files":; spalte2=$afname
1995	printf "\| $spalte1$spalte2 \| \n"
1996	fi
1997	spalte1="INPUT control list":; spalte2=$input_list
1998	printf "\| $spalte1$spalte2 \| \n"
1999	spalte1="OUTPUT control list":; spalte2=$output_list
2000	printf "\| $spalte1$spalte2 \| \n"
2001
2002	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2003	then
2004	spalte1="memory demand / PE":; spalte2="$memory MB"
2005	printf "\| $spalte1$spalte2 \| \n"
2006	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2007	printf "\| $spalte1$spalte2 \| \n"
2008	fi
2009
2010	if [[ $do_compile = true ]]
2011	then
2012	printf "\| \| \n"
2013	printf "\| Files to be compiled: \| \n"
2014	zeile=$source_list
2015	while [[ "$zeile" != "" ]]
2016	do
2017	spalte3=$zeile
2018	printf "\| $spalte3 \| \n"
2019	zeile=$(echo "$zeile" \| cut -c61-)
2020	done
2021	fi
2022	printf "#--------------------------------------------------------------#"
2023
2024
2025
2026	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2027	if [[ $do_trace = true ]]
2028	then
2029	(( i = 0 ))
2030	while (( i < iin ))
2031	do
2032	(( i = i + 1 ))
2033	if (( i == 1 ))
2034	then
2035	printf "\n\n >>> INPUT-file assignments:\n"
2036	fi
2037	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2038	done
2039	(( i = 0 ))
2040	while (( i < iout ))
2041	do
2042	(( i = i + 1 ))
2043	if (( i == 1 ))
2044	then
2045	printf "\n\n >>> OUTPUT-file assignments:\n"
2046	fi
2047	printf "\n ${localout[$i]} : ${pathout[$i]}"
2048	done
2049	(( i = 0 ))
2050	while (( i < iic ))
2051	do
2052	(( i = i + 1 ))
2053	if (( i == 1 ))
2054	then
2055	printf "\n\n >>> INPUT-commands:\n"
2056	fi
2057	printf "\n ${in_command[$i]}"
2058	done
2059	(( i = 0 ))
2060	while (( i < ioc ))
2061	do
2062	(( i = i + 1 ))
2063	if (( i == 1 ))
2064	then
2065	printf "\n\n >>> OUTPUT-commands:\n"
2066	fi
2067	printf "\n ${out_command[$i]}"
2068	done
2069	fi
2070
2071
2072	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2073	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2074	then
2075	antwort=dummy
2076	printf "\n\n"
2077	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2078	do
2079	printf " >>> everything o.k. (y/n) ? "
2080	read antwort
2081	done
2082	if [[ $antwort = n \|\| $antwort = N ]]
2083	then
2084	locat=user_abort; (( iec = 0 )); exit
2085	fi
2086	if [[ $do_batch = true ]]
2087	then
2088	printf " >>> batch-job will be created and submitted"
2089	else
2090	if [[ $local_compile = false ]]
2091	then
2092	printf " >>> MRUN will now continue to execute on this machine"
2093	else
2094	printf " >>> a test compilation will now be carried out on this machine"
2095	fi
2096	fi
2097	fi
2098
2099
2100
2101
2102	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2103	# CHENDE AKTIONEN DURCHGEFUEHRT
2104	if [[ $do_batch = false ]]
2105	then
2106
2107
2108	# TEMPORAEREN KATALOG ERZEUGEN
2109	mkdir -p $TEMPDIR
2110	chmod go+rx $TEMPDIR
2111	tmpcreate=true
2112
2113
2114	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2115	# TEMPORAERES VERZEICHNIS KOPIEREN
2116	if [[ $do_compile = true ]]
2117	then
2118
2119	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2120	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2121	if [[ $localhost = nech ]]
2122	then
2123	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2124	if mkdir -p $TEMPDIR_COMPILE
2125	then
2126	printf "\n *** \"$TEMPDIR_COMPILE\" "
2127	printf "\n is generated as temporary directory for cross compiling\n"
2128	else
2129	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2130	printf "\n needed for cross compilation failed"
2131	locat=compile
2132	exit
2133	fi
2134	else
2135	TEMPDIR_COMPILE=$TEMPDIR
2136	fi
2137
2138
2139	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2140	line=""
2141	grep "%depository_path" $config_file > tmp_mrun
2142	while read line
2143	do
2144	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2145	then
2146	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2147	then
2148	global_depository_path=`echo $line \| cut -d" " -s -f2`
2149	fi
2150	fi
2151	done < tmp_mrun
2152
2153	line=""
2154	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2155	while read line
2156	do
2157	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2158	then
2159	local_depository_path=`echo $line \| cut -d" " -s -f2`
2160	fi
2161	done < tmp_mrun
2162
2163	if [[ "$local_depository_path" = "" ]]
2164	then
2165	if [[ "$global_depository_path" != "" ]]
2166	then
2167	local_depository_path=$global_depository_path
2168	else
2169	printf "\n\n +++ no depository path found in configuration file"
2170	printf "\n for local host \"$localhost\" "
2171	printf "\n please set \"\%depository_path\" in configuration file\n"
2172	locat=config_file; exit
2173	fi
2174	fi
2175	eval local_depository_path=$local_depository_path
2176
2177	basename=`print $mainprog \| cut -f1 -d"."`
2178	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2179	if [[ ! -f $make_depository ]]
2180	then
2181	printf "\n"
2182	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2183	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2184	else
2185	cp $make_depository $TEMPDIR_COMPILE
2186	cd $TEMPDIR_COMPILE
2187	tar -xf $make_depository > /dev/null 2>&1
2188	cd - > /dev/null
2189	fi
2190
2191	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2192
2193	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2194	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2195	# MAKEFILE EINTRAGEN
2196	cd $TEMPDIR_COMPILE
2197	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2198	if [[ "$interface_file" != "" ]]
2199	then
2200	interface_file=`echo $interface_file \| cut -d"." -f1`
2201	mv Makefile Makefile_old
2202	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2203	fi
2204	cd - > /dev/null
2205	else
2206	cp $executable ${TEMPDIR}/a.out
2207	fi
2208
2209
2210	# WECHSEL IN TEMPORAEREN KATALOG
2211	cd $TEMPDIR
2212	printf "\n *** changed to temporary directory: $TEMPDIR"
2213
2214
2215	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2216	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2217	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2218	# ERMITTELN
2219	(( i = 0 ))
2220	while (( i < iout ))
2221	do
2222	(( i = i + 1 ))
2223	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2224	then
2225	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2226	else
2227	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2228	fi
2229	done
2230
2231
2232	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2233	if [[ $do_compile = true ]]
2234	then
2235
2236
2237	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2238	printf "\n\n\n *** compilation starts \n$striche\n"
2239	printf " *** compilation with make using following options:\n"
2240	printf " compilername: $compiler_name\n"
2241	printf " options: $fopts\n"
2242	printf " preprocessor-directives: $cpp_options \n"
2243	printf " linker-options: $lopts \n"
2244	printf " source code files: $source_list \n"
2245
2246	if [[ $localhost = nech ]]
2247	then
2248	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2249	cp $TEMPDIR_COMPILE/a.out .
2250	[[ $? != 0 ]] && compile_error=true
2251	rm -rf $TEMPDIR_COMPILE
2252	elif [[ $localhost = lcsgib ]]
2253	then
2254	printf " compiler is called via ssh on \"bicegate\" \n"
2255	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2256	[[ ! -f a.out ]] && compile_error=true
2257	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2258	elif [[ $localhost = lcsgih ]]
2259	then
2260	printf " compiler is called via ssh on \"hicegate\" \n"
2261	ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2262	# ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2263	# print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " \| ssh ${usern}@130.75.4.102 2>&1
2264	[[ ! -f a.out ]] && compile_error=true
2265	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2266	else
2267	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2268	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2269	fi
2270
2271	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2272	then
2273	printf "\n +++ error occured while compiling or linking"
2274	locat=compile
2275
2276	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2277	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2278	# then
2279	exit
2280	# else
2281	# locat=normal
2282	# fi
2283	else
2284	printf "$striche\n *** compilation finished \n"
2285	fi
2286	fi
2287
2288
2289	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2290	if [[ $local_compile = true ]]
2291	then
2292	cd $HOME
2293	rm -rf $TEMPDIR
2294	locat=local_compile; exit
2295	fi
2296
2297
2298	# BEREITSTELLEN DER INPUT-DATEIEN
2299	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2300	(( i = 0 ))
2301	while (( i < iin ))
2302	do
2303	(( i = i + 1 ))
2304	if (( i == 1 ))
2305	then
2306	printf "\n\n *** providing INPUT-files:\n$striche"
2307	fi
2308
2309
2310	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2311	if [[ "${transin[$i]}" = unavailable ]]
2312	then
2313	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2314	then
2315	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2316	printf "\n is not available!"
2317	else
2318	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2319	printf "\n is not available!"
2320	fi
2321	continue
2322	fi
2323
2324	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2325	files_for_pes=false; datentyp=file
2326	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2327	then
2328	files_for_pes=true; datentyp=directory
2329	actionin[$i]=""
2330	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2331	then
2332	actionin[$i]=""
2333	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2334	then
2335	files_for_pes=true; datentyp=directory
2336	actionin[$i]="ar"
2337	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2338	then
2339	actionin[$i]="ar"
2340	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2341	then
2342	files_for_pes=true; datentyp=directory
2343	actionin[$i]="fl"
2344	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2345	then
2346	actionin[$i]="fl"
2347	fi
2348
2349	if [[ $files_for_pes = true ]]
2350	then
2351	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2352	else
2353	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2354	fi
2355
2356	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2357	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2358	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2359	# SERVER ZU HOLEN
2360	if [[ "${actionin[$i]}" = fl ]]
2361	then
2362	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2363	if [[ $files_for_pes = false ]]
2364	then
2365	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2366	then
2367	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2368	got_tmp[$i]=true
2369	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2370	then
2371	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2372	printf "\n *** trying to use backup copy in \"$WORK\" "
2373	cp $WORK/${frelin[$i]} ${localin[$i]}
2374	else
2375	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2376	printf "\n or \"$tmp_data_catalog\" does not exist!"
2377	printf "\n *** trying to get copy from archive"
2378	actionin[$i]=ar
2379	fi
2380	else
2381	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2382	then
2383	mkdir ${localin[$i]}
2384	cd $tmp_data_catalog/${frelin[$i]}
2385	for file in $(ls *)
2386	do
2387	ln $file $TEMPDIR/${localin[$i]}
2388	done
2389	cd $TEMPDIR
2390	got_tmp[$i]=true
2391	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2392	then
2393	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2394	printf "\n *** trying to use backup copy in \"$WORK\" "
2395	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2396	else
2397	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2398	printf "\n or \"$tmp_data_catalog\" does not exist!"
2399	printf "\n *** trying to get copy from archive"
2400	actionin[$i]=ar
2401	fi
2402	fi
2403	fi
2404
2405
2406	# DATEI LIEGT AUF ARCHIV-SERVER
2407	if [[ "${actionin[$i]}" = ar ]]
2408	then
2409
2410	if [[ $files_for_pes = false ]]
2411	then
2412	printf "\n file will be restored from archive-system ($archive_system)!"
2413	else
2414	printf "\n directory will be restored from archive-system ($archive_system)!"
2415	fi
2416
2417	file_restored=false
2418
2419	if [[ $archive_system = asterix ]]
2420	then
2421	do_stagein=true
2422	(( stagein_anz = 0 ))
2423	while [[ $do_stagein = true ]]
2424	do
2425	if [[ $files_for_pes = false ]]
2426	then
2427	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2428	else
2429	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2430	fi
2431	cat STAGEIN_OUTPUT
2432	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2433	then
2434	file_restored=true
2435	do_stagein=false
2436	else
2437	(( stagein_anz = stagein_anz + 1 ))
2438	if (( stagein_anz == 10 ))
2439	then
2440	printf "\n +++ stagein stoped after 10 tries"
2441	locat=stage
2442	exit
2443	fi
2444	printf "\n +++ restoring from archive failed, trying again:"
2445	sleep 900
2446	fi
2447	done
2448	elif [[ $archive_system = DMF ]]
2449	then
2450	if [[ $files_for_pes = false ]]
2451	then
2452	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2453	locat=DMF
2454	exit
2455	else
2456	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2457	cp -r $ARCHIVE/${frelin[$i]} $PWD
2458	file_restored=true
2459	fi
2460	elif [[ $archive_system = tivoli ]]
2461	then
2462	if [[ $files_for_pes = false ]]
2463	then
2464	if [[ $localhost = ibmh ]]
2465	then
2466	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2467	else
2468	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2469	fi
2470	else
2471	(( inode = 0 ))
2472	while (( inode < nodes ))
2473	do
2474	if [[ $localhost = ibmh ]]
2475	then
2476	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2477	else
2478	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2479	fi
2480	(( inode = inode + 1 ))
2481	done
2482	fi
2483	file_restored=true
2484	elif [[ $archive_system = ut ]]
2485	then
2486	if [[ $files_for_pes = false ]]
2487	then
2488	cp $UT/${frelin[$i]} .
2489	else
2490	(( inode = 0 ))
2491	while (( inode < nodes ))
2492	do
2493	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2494	(( inode = inode + 1 ))
2495	done
2496	fi
2497	file_restored=true
2498	else
2499	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2500	locat=rearchive
2501	exit
2502	fi
2503
2504	if [[ $file_restored = true ]]
2505	then
2506
2507	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2508	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2509	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2510	if [[ $files_for_pes = false ]]
2511	then
2512	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2513	else
2514	mkdir $tmp_data_catalog/${frelin[$i]}
2515	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2516	fi
2517	got_tmp[$i]=true
2518
2519	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2520	mv ${frelin[$i]} ${localin[$i]}
2521
2522	fi
2523	fi
2524
2525
2526	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2527	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2528	then
2529
2530	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2531	then
2532
2533	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2534	printf "\n file will be provided for $numprocs processors"
2535	mkdir ${localin[$i]}
2536	ival=$numprocs
2537	(( ii = 0 ))
2538	while (( ii <= ival-1 ))
2539	do
2540	if (( ii < 10 ))
2541	then
2542	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2543	elif (( ii < 100 ))
2544	then
2545	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2546	elif (( ii < 1000 ))
2547	then
2548	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2549	else
2550	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2551	fi
2552	(( ii = ii + 1 ))
2553	done
2554
2555	else
2556
2557	if [[ $files_for_pes = true ]]
2558	then
2559
2560	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2561	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2562	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2563	# PER MOVE UMBENANNT WERDEN
2564	printf "\n providing $numprocs files for the respective processors"
2565	mkdir ${localin[$i]}
2566	if [[ $link_local_input = true ]]
2567	then
2568	printf " using ln -f\n"
2569	cd ${absnamein[$i]}
2570	for file in $(ls *)
2571	do
2572	ln -f $file ${localin[$i]}
2573	done
2574	cd $TEMPDIR
2575	fi
2576	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2577	if [[ ! -f "${localin[$i]}/_0000" ]]
2578	then
2579	if [[ $link_local_input = true ]]
2580	then
2581	printf " ln failed for .../_0000, using cp...\n"
2582	fi
2583	cp -r ${absnamein[$i]}/* ${localin[$i]}
2584	fi
2585
2586	else
2587	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2588	if [[ $link_local_input = true ]]
2589	then
2590	printf " using ln -f\n"
2591	ln -f ${absnamein[$i]} ${localin[$i]}
2592	fi
2593	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2594	if [[ ! -f "${localin[$i]}" ]]
2595	then
2596	if [[ $link_local_input = true ]]
2597	then
2598	printf " ln failed, using cp...\n"
2599	fi
2600	cp ${absnamein[$i]} ${localin[$i]}
2601	fi
2602	fi
2603	fi
2604	fi
2605
2606	done
2607	if (( i != 0 ))
2608	then
2609	printf "\n$striche\n *** all INPUT-files provided \n"
2610	fi
2611
2612
2613	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2614	# LESEN VON PALM)
2615	cat > ENVPAR << %%END%%
2616	&envpar run_identifier = '$fname', host = '$localhost',
2617	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2618	maximum_cpu_time_allowed = ${cpumax}.,
2619	revision = '$global_revision' /
2620
2621	%%END%%
2622
2623
2624	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2625	(( i = 0 ))
2626	while (( i < iic ))
2627	do
2628	(( i = i + 1 ))
2629	if (( i == 1 ))
2630	then
2631	printf "\n\n *** execution of INPUT-commands:\n$striche"
2632	fi
2633	printf "\n >>> ${in_command[$i]}"
2634	eval ${in_command[$i]}
2635	if (( i == iic ))
2636	then
2637	printf "\n$striche\n"
2638	fi
2639	done
2640
2641
2642	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2643	cpurest=${cpumax}.
2644
2645
2646	# PROGRAMMSTART
2647	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2648	PATH=$PATH:$TEMPDIR
2649
2650	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2651	then
2652	if [[ "$ENVIRONMENT" = BATCH ]]
2653	then
2654	printf "\n +++ debug is allowed in interactive mode only"
2655	locat=debug
2656	exit
2657	fi
2658	if [[ $localhost = decalpha ]]
2659	then
2660	dxladebug a.out
2661	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2662	then
2663
2664	# SETUP THE IBM MPI ENVIRONMENT
2665	export MP_SHARED_MEMORY=yes
2666	export AIXTHREADS_SCOPE=S
2667	export OMP_NUM_THREADS=$threads_per_task
2668	export AUTHSTATE=files
2669	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2670
2671	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2672	export MP_ADAPTER_USE=shared
2673	export MP_CPU_USE=multiple
2674	export MP_TIMEOUT=1200
2675
2676	unset MP_TASK_AFFINITY
2677
2678	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2679	#(( ii = 1 ))
2680	#while (( ii <= $numprocs ))
2681	#do
2682	# echo $localhost_realname >> hostfile
2683	# (( ii = ii + 1 ))
2684	#done
2685	#export MP_HOSTFILE=hostfile
2686
2687	if [[ "$LOADLBATCH" = yes ]]
2688	then
2689	totalview poe a.out $ROPTS
2690	else
2691	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2692	export TVDSVRLAUNCHCMD=ssh
2693	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2694	fi
2695	else
2696	printf "\n +++ no debug available on \"$localhost\" "
2697	printf "\n or not implemented in mrun so far"
2698	locat=debug
2699	exit
2700	fi
2701	else
2702	if [[ -n $numprocs ]]
2703	then
2704
2705	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2706	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2707	then
2708	# SETUP THE IBM MPI ENVIRONMENT
2709	export MP_SHARED_MEMORY=yes
2710	export AIXTHREAD_SCOPE=S
2711	export OMP_NUM_THREADS=$threads_per_task
2712	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2713	export AUTHSTATE=files
2714	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2715	# export MP_PRINTENV=yes
2716
2717	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2718	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2719	export MP_WAIT_MODE=poll
2720	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2721	# export MP_EAGER_LIMIT=65535
2722
2723	# # TESTWEISE FUER TURBOMPI (JAN 05)
2724	# export MPJ_MTAB=128
2725	# export MPJ_ALLTOALL=1
2726	# export MPJ_ALLTOALLV=1
2727
2728	if [[ "$LOADLBATCH" = yes ]]
2729	then
2730	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2731	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2732	then
2733	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2734	else
2735	poe ./a.out $ROPTS
2736	fi
2737	else
2738	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2739	then
2740	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
2741	elif [[ $localhost = ibmy ]]
2742	then
2743	if [[ -f $hostfile ]]
2744	then
2745	cp $hostfile hostfile
2746	else
2747	(( ii = 1 ))
2748	while (( ii <= $numprocs ))
2749	do
2750	echo $localhost_realname >> hostfile
2751	(( ii = ii + 1 ))
2752	done
2753	fi
2754	export MP_HOSTFILE=hostfile
2755	./a.out -procs $tasks_per_node $ROPTS
2756	else
2757	if [[ "$host_file" = "" ]]
2758	then
2759	printf "\n +++ no hostfile given in configuration file"
2760	locat=config_file
2761	exit
2762	else
2763	eval host_file=$host_file
2764	fi
2765	export MP_HOSTFILE=$host_file
2766	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
2767	fi
2768	fi
2769	elif [[ $host = nech \|\| $host = neck ]]
2770	then
2771	(( ii = nodes ))
2772	if [[ $ii = 1 ]]
2773	then
2774	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2775	export MPIPROGINF=YES
2776	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2777	echo "*** execution on single node with mpirun"
2778	mpirun -np $numprocs ./a.out $ROPTS
2779	else
2780	(( i = 0 ))
2781	while (( i < ii ))
2782	do
2783	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2784	(( i = i + 1 ))
2785	done
2786
2787	echo "#!/bin/sh" > mpi_exec_shell
2788	echo " " >> mpi_exec_shell
2789	echo "set -u" >> mpi_exec_shell
2790	echo "F_ERRCNT=0" >> mpi_exec_shell
2791	echo "MPIPROGINV=YES" >> mpi_exec_shell
2792	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2793	echo "cpurest=$cpurest" >> mpi_exec_shell
2794	echo "fname=$fname" >> mpi_exec_shell
2795	echo "localhost=$localhost" >> mpi_exec_shell
2796	echo "return_addres=$return_addres" >> mpi_exec_shell
2797	echo "return_username=$return_username" >> mpi_exec_shell
2798	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2799	echo "write_binary=$write_binary" >> mpi_exec_shell
2800	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2801	echo " " >> mpi_exec_shell
2802	echo "export F_ERRCNT" >> mpi_exec_shell
2803	echo "export MPIPROGINV" >> mpi_exec_shell
2804	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2805	echo "export cpurest" >> mpi_exec_shell
2806	echo "export fname" >> mpi_exec_shell
2807	echo "export localhost" >> mpi_exec_shell
2808	echo "export return_addres" >> mpi_exec_shell
2809	echo "export return_username" >> mpi_exec_shell
2810	echo "export tasks_per_node" >> mpi_exec_shell
2811	echo "export write_binary" >> mpi_exec_shell
2812	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2813	echo " " >> mpi_exec_shell
2814	echo "exec ./a.out" >> mpi_exec_shell
2815
2816	chmod u+x mpi_exec_shell
2817	export MPIPROGINF=YES
2818	mpirun -f multinode_config &
2819	wait
2820
2821	fi
2822	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
2823	then
2824
2825	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2826	# DOES NOT EXIST
2827	if [[ $host != lcsgih && $host != lcsgib ]]
2828	then
2829	if [[ -f $hostfile ]]
2830	then
2831	cp $hostfile hostfile
2832	else
2833	(( ii = 1 ))
2834	while (( ii <= $numprocs / $threads_per_task ))
2835	do
2836	echo $localhost_realname >> hostfile
2837	(( ii = ii + 1 ))
2838	done
2839	fi
2840	eval zeile=\"`head -n $ii hostfile`\"
2841	printf "\n *** running on: $zeile"
2842	fi
2843
2844	(( ii = $numprocs / $threads_per_task ))
2845	export OMP_NUM_THREADS=$threads_per_task
2846	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2847	if [[ $threads_per_task != 1 ]]
2848	then
2849	printf "\n threads per task: $threads_per_task"
2850	fi
2851	if [[ $run_coupled_model = false ]]
2852	then
2853	printf "\n\n"
2854	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2855	then
2856	# ulimit -s 300000 # A too large stack size causes problems
2857	# export MV2_NUM_PORTS=2
2858	# export MV2_CPU_MAPPING=0:1:2:3
2859	# mpiexec ./a.out $ROPTS
2860	mpiexec_mpt -np $ii ./a.out $ROPTS
2861	elif [[ $host = lcxt4 ]]
2862	then
2863	aprun -n $ii -N $tasks_per_node a.out $ROPTS
2864	else
2865	echo "no_coupling" > runfile_atmos
2866	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
2867	fi
2868	else
2869	(( iii = ii / 2 ))
2870	echo "atmosphere_to_ocean" > runfile_atmos
2871	echo "ocean_to_atmosphere" > runfile_ocean
2872
2873	printf "\n coupled run ($iii atmosphere, $iii ocean)"
2874	printf "\n\n"
2875
2876	if [[ $host = lcsgih \|\| $host = lcsgib ]]
2877	then
2878
2879	mpiexec -n $iii a.out $ROPTS < runfile_atmos &
2880	mpiexec -n $iii a.out $ROPTS < runfile_ocean &
2881	# head -n $iii $PBS_NODEFILE > nodefile_atmos
2882	# echo "--- nodefile_atmos:"
2883	# cat nodefile_atmos
2884	# tail -n $iii $PBS_NODEFILE > nodefile_ocean
2885	# echo "--- nodefile_ocean:"
2886	# cat nodefile_ocean
2887	# export PBS_NODEFILE=${PWD}/nodefile_atmos
2888	# mpiexec_mpt -np $iii ./a.out $ROPTS < runfile_atmos &
2889	# export PBS_NODEFILE=${PWD}/nodefile_ocean
2890	# mpiexec_mpt -np $iii ./a.out $ROPTS < runfile_ocean &
2891
2892
2893	elif [[ $host = lcxt4 ]]
2894	then
2895	aprun -n $iii -N $tasks_per_node a.out < runfile_atmos $ROPTS &
2896	aprun -n $iii -N $tasks_per_node a.out < runfile_ocean $ROPTS &
2897	else
2898
2899	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
2900	mpiexec -machinefile hostfile -n $iii a.out $ROPTS < runfile_atmos &
2901	mpiexec -machinefile hostfile -n $iii a.out $ROPTS < runfile_ocean &
2902	# mpiexec -machinefile hostfile -n $iii -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
2903	# mpiexec -machinefile hostfile -n $iii -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
2904	fi
2905	wait
2906	fi
2907
2908	# if [[ $scirocco = true ]]
2909	# then
2910	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
2911	# else
2912	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
2913	# fi
2914
2915	elif [[ $host = decalpha ]]
2916	then
2917	dmpirun -np $numprocs a.out $ROPTS
2918	elif [[ $host = lctit ]]
2919	then
2920	export runfile=runfile.$kennung
2921
2922	echo "cd $PWD" > $runfile
2923	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2924	echo "export cpurest=$cpurest" >> $runfile
2925	echo "export fname=$fname" >> $runfile
2926	echo "export localhost=$localhost" >> $runfile
2927	echo "export return_addres=$return_addres" >> $runfile
2928	echo "export return_username=$return_username" >> $runfile
2929	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2930	echo "export write_binary=$write_binary" >> $runfile
2931	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2932	echo "./a.out" >> $runfile
2933	chmod u+x $runfile
2934
2935	if [[ "$QUEUE" = interactive ]]
2936	then
2937	mpirun -np $numprocs a.out $ROPTS
2938	else
2939	(( mem_tsubame = $memory / 1024.0 ))
2940	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
2941	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
2942	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
2943	fi
2944
2945	rm $runfile
2946	else
2947	mpprun -n $numprocs a.out $ROPTS
2948	fi
2949	[[ $? != 0 ]] && execution_error=true
2950
2951
2952	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2953	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2954	then
2955	apprentice
2956	fi
2957	else
2958	a.out $ROPTS
2959	fi
2960	fi
2961	if [[ $? != 0 \|\| $execution_error = true ]]
2962	then
2963
2964	# ABBRUCH BEI LAUFZEITFEHLER
2965	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
2966	printf "\n +++ runtime error occured"
2967	locat=execution
2968	exit
2969	else
2970	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
2971	printf "\n$striche\n *** execution finished \n"
2972	fi
2973
2974
2975
2976	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2977	(( i = 0 ))
2978	while (( i < ioc ))
2979	do
2980	(( i = i + 1 ))
2981	if (( i == 1 ))
2982	then
2983	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2984	fi
2985	printf "\n >>> ${out_command[$i]}"
2986	eval ${out_command[$i]}
2987	if (( i == ioc ))
2988	then
2989	printf "\n$striche\n"
2990	fi
2991	done
2992
2993
2994	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
2995	if [[ $do_trace = true ]]
2996	then
2997	printf "\n\n"
2998	ls -al
2999	fi
3000
3001
3002
3003	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3004	(( i = 0 ))
3005	while (( i < iout ))
3006	do
3007	(( i = i + 1 ))
3008	if (( i == 1 ))
3009	then
3010	printf "\n\n *** saving OUTPUT-files:\n$striche"
3011	fi
3012
3013	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3014	files_for_pes=false; filetyp=file
3015	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3016	then
3017	files_for_pes=true; filetyp=directory
3018	actionout[$i]=""
3019	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3020	then
3021	actionout[$i]=""
3022	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3023	then
3024	files_for_pes=true; filetyp=directory
3025	actionout[$i]="ar"
3026	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3027	then
3028	actionout[$i]="ar"
3029	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3030	then
3031	files_for_pes=true; filetyp=directory
3032	actionout[$i]="fl"
3033	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3034	then
3035	actionout[$i]="fl"
3036	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3037	then
3038	files_for_pes=true; filetyp=directory
3039	actionout[$i]="tr"
3040	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3041	then
3042	actionout[$i]="tr"
3043	fi
3044
3045	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3046	then
3047	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3048	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3049	then
3050	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3051	else
3052
3053
3054	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3055	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3056	# REMOTE-RECHNUNGEN
3057	if [[ "${actionout[$i]}" = tr ]]
3058	then
3059	if [[ $localhost != $fromhost ]]
3060	then
3061	if [[ $files_for_pes = false ]]
3062	then
3063	cps=""
3064	cst=""
3065	else
3066	cps=-c
3067	cst="/"
3068	fi
3069	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3070	then
3071
3072	# TRANSFER IN EIGENSTAENDIGEM JOB
3073	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3074	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3075	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3076	if [[ $files_for_pes = false ]]
3077	then
3078	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3079	else
3080	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3081	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3082	fi
3083
3084	echo "set -x" > transfer_${localout[$i]}
3085	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3086
3087	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3088	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3089	printf "\n or higher cycle\n"
3090	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3091
3092	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3093
3094	if [[ $localhost = nech ]]
3095	then
3096	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3097	else
3098	if [[ "$LOGNAME" = b323013 ]]
3099	then
3100	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3101	else
3102	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3103	fi
3104	fi
3105
3106	else
3107
3108	# TRANSFER INNERHALB DIESES JOBS
3109	transfer_failed=false
3110	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3111	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3112	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3113	[[ $? != 0 ]] && transfer_failed=true
3114
3115	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3116	# LOKALER MASCHINE ANLEGEN
3117	if [[ $transfer_failed = true ]]
3118	then
3119	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3120	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3121
3122	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3123	# ANLEGEN.
3124	eval local_catalog=${pathout[$i]}
3125	if [[ ! -d $local_catalog ]]
3126	then
3127	printf " *** local directory does not exist. Trying to create:\n"
3128	printf " $local_catalog \n"
3129	mkdir -p $local_catalog
3130	fi
3131	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3132	transfer_problems=true
3133	fi
3134	fi
3135	else
3136
3137	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3138	actionout[$i]=""
3139	fi
3140	fi
3141
3142
3143	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3144	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3145	# REMOTE-RECHNUNGEN
3146	if [[ "${actionout[$i]}" = tra ]]
3147	then
3148	if [[ $localhost != $fromhost ]]
3149	then
3150	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3151	then
3152
3153	# TRANSFER IN EIGENSTAENDIGEM JOB
3154	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3155	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3156	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3157	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3158
3159	echo "set -x" > transfer_${localout[$i]}
3160	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3161
3162	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3163	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3164	printf "\n or higher cycle\n"
3165	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3166
3167	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3168
3169	if [[ $localhost = nech ]]
3170	then
3171	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3172	else
3173	if [[ $LOGNAME = b323013 ]]
3174	then
3175	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3176	else
3177	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3178	fi
3179	fi
3180
3181	else
3182
3183	# TRANSFER INNERHALB DIESES JOBS
3184	transfer_failed=false
3185	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3186	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3187	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3188	[[ $? != 0 ]] && transfer_failed=true
3189
3190	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3191	# LOKALER MASCHINE ANLEGEN
3192	if [[ $transfer_failed = true ]]
3193	then
3194	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3195	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3196
3197	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3198	# ANLEGEN
3199	eval local_catalog=${pathout[$i]}
3200	if [[ ! -d $local_catalog ]]
3201	then
3202	printf " *** local directory does not exist. Trying to create:\n"
3203	printf " $local_catalog \n"
3204	mkdir -p $local_catalog
3205	fi
3206
3207	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3208	transfer_problems=true
3209	fi
3210	fi
3211	else
3212
3213	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3214	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3215	actionout[$i]=a
3216	fi
3217	fi
3218
3219
3220	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3221	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3222	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3223	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3224	if [[ "${actionout[$i]}" = fl ]]
3225	then
3226	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3227	chmod g+rx $tmp_data_catalog
3228	if [[ $files_for_pes = false ]]
3229	then
3230	printf "\n >>> OUTPUT: ${localout[$i]} to"
3231	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3232	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3233	else
3234	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3235	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3236	mkdir $tmp_data_catalog/${frelout[$i]}
3237	cd ${localout[$i]}
3238	for file in $(ls *)
3239	do
3240	ln -f $file $tmp_data_catalog/${frelout[$i]}
3241	done
3242	cd $TEMPDIR
3243	fi
3244
3245
3246	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3247	if [[ $store_on_archive_system = true ]]
3248	then
3249
3250	if [[ $archive_system = asterix ]]
3251	then
3252	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3253	if [[ $files_for_pes = false ]]
3254	then
3255	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3256	else
3257	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3258	fi
3259	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3260	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3261	echo "then" >> archive_${frelout[$i]}
3262	echo " do_stageout=false" >> archive_${frelout[$i]}
3263	echo "else" >> archive_${frelout[$i]}
3264	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3265	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3266	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3267	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3268	if [[ $files_for_pes = false ]]
3269	then
3270	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3271	else
3272	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3273	fi
3274	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3275	echo "fi" >> archive_${frelout[$i]}
3276	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3277	elif [[ $archive_system = DMF ]]
3278	then
3279	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3280	if [[ $files_for_pes = false ]]
3281	then
3282	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3283	locat=DMF
3284	exit
3285	else
3286	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3287	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3288	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3289	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3290	fi
3291	elif [[ $archive_system = tivoli ]]
3292	then
3293	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3294	if [[ $files_for_pes = false ]]
3295	then
3296	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3297	echo "set -x" >> archive_${frelout[$i]}
3298	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3299	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3300	else
3301
3302	echo "set -x" >> archive_${frelout[$i]}
3303	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3304	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3305	cd $tmp_data_catalog
3306	all_files=`ls -1 ${frelout[$i]}/*`
3307	cd - > /dev/null
3308	(( inode = 0 ))
3309	(( tp1 = tasks_per_node + 1 ))
3310	while (( inode < nodes ))
3311	do
3312	# echo "*** all_files = \"$all_files\" "
3313	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3314	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3315	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3316	# echo "*** files = \"$files\" "
3317	# echo "*** all_files = \"$all_files\" "
3318	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3319	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3320	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3321	(( inode = inode + 1 ))
3322	done
3323	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3324	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3325	fi
3326	elif [[ $archive_system = ut ]]
3327	then
3328	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3329	if [[ $files_for_pes = false ]]
3330	then
3331	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3332	echo "set -x" >> archive_${frelout[$i]}
3333	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3334	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3335	else
3336
3337	echo "set -x" >> archive_${frelout[$i]}
3338	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3339	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3340	cd $tmp_data_catalog
3341	all_files=`ls -1 ${frelout[$i]}/*`
3342	cd - > /dev/null
3343	(( inode = 0 ))
3344	(( tp1 = tasks_per_node + 1 ))
3345	while (( inode < nodes ))
3346	do
3347	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3348	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3349	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3350	(( inode = inode + 1 ))
3351	done
3352	fi
3353	elif [[ $archive_system = none ]]
3354	then
3355	printf " +++ archiving on $localhost not available!\n"
3356	fi
3357
3358	if [[ $archive_system != none ]]
3359	then
3360	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3361	then
3362	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3363	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3364	elif [[ $localhost = nech ]]
3365	then
3366	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3367	fi
3368	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3369	fi
3370	else
3371	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3372	fi
3373
3374
3375	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3376	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3377	if [[ $files_for_pes = false ]]
3378	then
3379	cat /dev/null > ${pathout[$i]}
3380	else
3381	mkdir -p ${pathout[$i]}
3382	fi
3383
3384	fi
3385
3386
3387	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3388	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3389	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3390	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3391	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3392	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3393	if [[ "${actionout[$i]}" = ar ]]
3394	then
3395	if [[ $files_for_pes = false ]]
3396	then
3397	printf "\n >>> OUTPUT: ${localout[$i]} to"
3398	printf "\n ${pathout[$i]}"
3399	printf "\n File will be copied to archive-system ($archive_system) !\n"
3400	else
3401	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3402	printf "\n ${pathout[$i]}"
3403	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3404	fi
3405	mv ${localout[$i]} ${frelout[$i]}
3406
3407	file_saved=false
3408
3409	if [[ $archive_system = asterix ]]
3410	then
3411	do_stageout=true
3412	(( stageout_anz = 0 ))
3413	while [[ $do_stageout = true ]]
3414	do
3415	if [[ $files_for_pes = false ]]
3416	then
3417	stageout ${frelout[$i]} > STAGE_OUTPUT
3418	else
3419	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3420	fi
3421	cat STAGE_OUTPUT
3422	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3423	then
3424	file_saved=true
3425	do_stageout=false
3426	else
3427	if [[ $files_for_pes = false ]]
3428	then
3429	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3430	else
3431	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3432	fi
3433	(( stageout_anz = stageout_anz + 1 ))
3434	if (( stageout_anz == 10 ))
3435	then
3436	printf "\n +++ stoped after 10 unsuccessful tries!"
3437	archive_save=false
3438	do_stageout=false
3439	else
3440	printf "\n *** new try to store on archive after 15 min:"
3441	sleep 900
3442	fi
3443	fi
3444	done
3445	elif [[ $archive_system = DMF ]]
3446	then
3447	if [[ $files_for_pes = false ]]
3448	then
3449	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3450	locat=DMF
3451	exit
3452	else
3453	rm -rf $ARCHIVE/${frelout[$i]}
3454	cp -r ${frelout[$i]} $ARCHIVE
3455	fi
3456	file_saved=true
3457	elif [[ $archive_system = tivoli ]]
3458	then
3459	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3460	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3461	# GELEGT WERDEN
3462	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3463	chmod g+rx $tmp_data_catalog
3464	if [[ $files_for_pes = false ]]
3465	then
3466	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3467	else
3468	mkdir $tmp_data_catalog/${frelout[$i]}
3469	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3470	fi
3471
3472	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3473	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3474	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3475	if [[ $files_for_pes = false ]]
3476	then
3477	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3478	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3479	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3480	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3481	else
3482	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3483	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3484	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3485	fi
3486
3487	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3488	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3489	file_saved=true
3490
3491	elif [[ $archive_system = ut ]]
3492	then
3493	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3494	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3495	# GELEGT WERDEN
3496	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3497	chmod g+rx $tmp_data_catalog
3498	if [[ $files_for_pes = false ]]
3499	then
3500	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3501	else
3502	mkdir $tmp_data_catalog/${frelout[$i]}
3503	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3504	fi
3505
3506	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3507	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3508	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3509	if [[ $files_for_pes = false ]]
3510	then
3511	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3512	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3513	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3514	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3515	else
3516	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3517	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3518	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3519	fi
3520
3521	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3522	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3523	file_saved=true
3524
3525	else
3526	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3527	archive_save=false
3528	fi
3529	if [[ $file_saved = true ]]
3530	then
3531	if [[ $files_for_pes = false ]]
3532	then
3533	cat /dev/null > ${pathout[$i]}
3534	else
3535	mkdir -p ${pathout[$i]}
3536	fi
3537	fi
3538	fi
3539
3540	# APPEND AUF LOKALER MASCHINE
3541	if [[ "${actionout[$i]}" = "a" ]]
3542	then
3543	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3544	cat ${localout[$i]} >> ${pathout[$i]}
3545	fi
3546
3547	# KOPIEREN AUF LOKALER MASCHINE
3548	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3549	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3550	then
3551
3552	# KOPIEREN AUF EINPROZESSORMASCHINE
3553	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3554	then
3555	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3556	if [[ $link_local_output = true ]]
3557	then
3558	printf " using ln -f\n"
3559	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3560	fi
3561	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3562	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3563	then
3564	if [[ $link_local_output = true ]]
3565	then
3566	printf " ln failed, using cp...\n"
3567	fi
3568	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3569	fi
3570	else
3571	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3572	if [[ $link_local_output = true ]]
3573	then
3574	printf " using ln -f\n"
3575	ln -f ${localout[$i]} ${pathout[$i]}
3576	fi
3577	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3578	if [[ ! -f "${pathout[$i]}" ]]
3579	then
3580	if [[ $link_local_output = true ]]
3581	then
3582	printf " ln failed, using cp...\n"
3583	fi
3584	cp ${localout[$i]} ${pathout[$i]}
3585	fi
3586	fi
3587
3588	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3589	then
3590
3591	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3592	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3593	# WIRD DANN KOPIERT
3594	# PER MOVE UMBENANNT WERDEN
3595	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3596	if [[ $link_local_output = true ]]
3597	then
3598	printf " using ln -f\n"
3599	mkdir ${pathout[$i]}
3600	cd ${localout[$i]}
3601	for file in $(ls *)
3602	do
3603	ln -f $file ${pathout[$i]}
3604	done
3605	cd $TEMPDIR
3606	fi
3607	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3608	if [[ ! -f "${pathout[$i]}/_0000" ]]
3609	then
3610	if [[ $link_local_output = true ]]
3611	then
3612	printf " ln failed for .../_0000, using cp...\n"
3613	fi
3614	cp -r ${localout[$i]} ${pathout[$i]}
3615	fi
3616
3617	fi
3618	fi
3619	done
3620	if (( i != 0 ))
3621	then
3622	if [[ $transfer_problems = true ]]
3623	then
3624	printf "\n$striche\n *** OUTPUT-files saved"
3625	printf "\n +++ WARNING: some data transfers failed! \n"
3626	else
3627	printf "\n$striche\n *** all OUTPUT-files saved \n"
3628	fi
3629	fi
3630
3631
3632	# EVENTUELL FOLGEJOB STARTEN
3633	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3634	if [[ -f CONTINUE_RUN ]]
3635	then
3636
3637	if [[ $archive_save = true ]]
3638	then
3639
3640	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3641	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3642	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3643	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3644	# HANDEN
3645	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3646	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3647	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3648	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3649	then
3650	mc=`echo $mc \| sed 's/#/f/g'`
3651	fi
3652
3653
3654	# JOB STARTEN
3655	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3656	echo " $mc"
3657	printf "\n$striche\n"
3658	if [[ $localhost != $fromhost ]]
3659	then
3660
3661	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3662	then
3663	echo "*** ssh will be used to initiate restart-runs!"
3664	echo " return_addres=\"$return_addres\" "
3665	echo " return_username=\"$return_username\" "
3666	if [[ $return_addres = 172.20.25.41 ]]
3667	then
3668	# WORKAROUND AUF SCIROCCO AM TIT
3669	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3670	else
3671	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3672	fi
3673	else
3674	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3675	locat=restart; exit
3676	fi
3677
3678	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3679	# DER AKTUELLE JOB ENDET
3680	sleep 30
3681
3682	else
3683
3684	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3685	# RUFEN WERDEN, AUSSER AUF lcfimm
3686	cd $LOCAL_PWD
3687	if [[ $localhost = lcfimm ]]
3688	then
3689	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3690	else
3691	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3692	fi
3693	cd - > /dev/null
3694	fi
3695	printf "\n$striche\n *** restart-run initiated \n"
3696
3697
3698	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3699	# GEHOLT WORDEN SIND, LOESCHEN
3700	(( i = 0 ))
3701	while (( i < iin ))
3702	do
3703	(( i = i + 1 ))
3704	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3705	then
3706	rm -r $tmp_data_catalog/${frelin[$i]}
3707	fi
3708	done
3709
3710	else
3711
3712	printf "\n +++ no restart-run possible, since errors occured"
3713	printf "\n during the archive process"
3714	fi
3715
3716	fi
3717
3718
3719
3720	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3721	if [[ "$email_notification" != "" ]]
3722	then
3723
3724	if [[ $localhost != $fromhost ]]
3725	then
3726	if [[ -f CONTINUE_RUN ]]
3727	then
3728	echo "PALM restart run necessary" > email_text
3729	echo "description header of actual run:" >> email_text
3730	cat CONTINUE_RUN >> email_text
3731	echo "mrun-command to restart:" >> email_text
3732	echo "$mc" >> email_text
3733	else
3734	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3735	fi
3736	mail $email_notification < email_text
3737	printf "\n *** email notification sent to \"$email_notification\" "
3738	fi
3739	fi
3740
3741
3742
3743	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3744	cd $HOME
3745	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3746
3747	else
3748
3749
3750	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3751	# CHENDE AKTIONEN DURCHGEFUEHRT
3752
3753	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3754	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3755	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3756	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3757	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
3758	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3759	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3760	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3761	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3762	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3763	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3764	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3765	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3766	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3767	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3768	if [[ $use_openmp = true ]]
3769	then
3770	mrun_com=${mrun_com}" -O"
3771	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3772	else
3773	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3774	fi
3775	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3776	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3777	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3778	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3779	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
3780	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y"
3781	if [[ $do_remote = true ]]
3782	then
3783	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3784	fi
3785
3786
3787	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3788	jobfile=jobfile.$RANDOM
3789
3790
3791	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3792	echo "mkdir $TEMPDIR" >> $jobfile
3793	echo "cd $TEMPDIR" >> $jobfile
3794
3795
3796	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3797	if [[ $do_trace = true ]]
3798	then
3799	echo "set -x" >> $jobfile
3800	else
3801	echo "set +vx" >> $jobfile
3802	fi
3803
3804
3805	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
3806	# DATEI FUER DEN JOB
3807	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
3808	then
3809
3810	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
3811	# KOPIEREN
3812	if [[ $restart_run != true ]]
3813	then
3814	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
3815	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
3816	fi
3817
3818	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
3819	echo "set -x" >> $jobfile
3820	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
3821	echo "export SOURCES_COMPLETE=true" >> $jobfile
3822
3823	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
3824	# ARBEITSVERZEICHNIS VERSCHIEBEN
3825	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
3826	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
3827	echo "execute_mrun=true" >> $jobfile
3828	echo " " >> $jobfile
3829
3830	else
3831
3832	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3833	# SOWIE GEGEBENENFALLS DES MAKEFILES
3834	if [[ $do_compile = true ]]
3835	then
3836
3837	source_catalog=SOURCES_FOR_RUN_$fname
3838
3839	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3840	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3841	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3842	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3843	echo "export SOURCES_COMPLETE=true" >> $jobfile
3844	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3845
3846	for filename in $source_list
3847	do
3848	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3849	echo "cat > $filename << \"%END%\"" >> $jobfile
3850	cat $source_catalog/$filename >> $jobfile
3851	echo " " >> $jobfile
3852	echo "%END%" >> $jobfile
3853	echo " " >> $jobfile
3854	done
3855
3856	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3857	echo "cat > Makefile << \"%END%\"" >> $jobfile
3858	cat $source_catalog/Makefile >> $jobfile
3859	echo " " >> $jobfile
3860	echo "%END%" >> $jobfile
3861	echo " " >> $jobfile
3862
3863	echo "cd - > /dev/null" >> $jobfile
3864
3865	fi
3866
3867
3868	# ABSPEICHERN DER KONFIGURATIONSDATEI
3869	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3870	echo "cat > $config_file << \"%END%\"" >> $jobfile
3871	cat $config_file >> $jobfile
3872	echo "%END%" >> $jobfile
3873	echo " " >> $jobfile
3874
3875
3876	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3877	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3878	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3879	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3880	echo "%END%" >> $jobfile
3881	if [[ $host = lctit ]]
3882	then
3883	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3884	echo "mv mrun_new $mrun_script_name" >> $jobfile
3885	fi
3886	echo "chmod u+x $mrun_script_name" >> $jobfile
3887	echo "execute_mrun=true" >> $jobfile
3888	echo " " >> $jobfile
3889
3890	fi
3891
3892
3893	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3894	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3895	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3896	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3897	if [[ $do_remote = true ]]
3898	then
3899	(( i = 0 ))
3900	while (( i < iin ))
3901	do
3902	(( i = i + 1 ))
3903	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3904	if [[ "${transin[$i]}" = job ]]
3905	then
3906	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3907	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3908	echo " " >> $jobfile
3909	echo "%END%" >> $jobfile
3910	else
3911	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3912	fi
3913
3914	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3915	echo "if [[ \$? = 1 ]]" >> $jobfile
3916	echo "then" >> $jobfile
3917	echo " echo \" \" " >> $jobfile
3918	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3919	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3920	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3921	echo " execute_mrun=false" >> $jobfile
3922	echo "fi" >> $jobfile
3923	done
3924	fi
3925
3926	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3927	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3928	echo "LOCAL_PWD=$working_directory" >> $jobfile
3929	echo "export LOCAL_PWD" >> $jobfile
3930
3931	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3932	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3933	echo "export LOCAL_MRUN_PATH" >> $jobfile
3934
3935	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3936	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3937	then
3938	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3939	fi
3940
3941	# MRUN AUF ZIELRECHNER AUFRUFEN
3942	echo "set -x" >> $jobfile
3943	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3944
3945	echo 'ls -al; echo `pwd`' >> $jobfile
3946	echo "cd \$HOME" >> $jobfile
3947	echo "rm -rf $TEMPDIR" >> $jobfile
3948
3949
3950
3951
3952	# JOB PER SUBJOB STARTEN
3953	if [[ $silent = false ]]
3954	then
3955	printf "\n "
3956	else
3957	printf "\n\n"
3958	fi
3959
3960	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
3961	rm -rf $jobfile
3962
3963
3964	fi # ENDE REMOTE-TEIL
3965
3966
3967
3968	# ENDE DER PROZEDUR

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