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source: palm/trunk/SCRIPTS/mrun @ 1091

Last change on this file since 1091 was 1091, checked in by raasch, 12 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1091 2013-02-02 07:09:11Z raasch $
29	#
30	# 2013-02-02 07:06:13Z raasch
31	# adjustments for Kyushu-University computing center (lckyut)
32	#
33	# 1083 2013-01-04 10:22:09Z maronga
34	# bugfix in parameter file check (read %cpp_options was missing)
35	#
36	# 1069 2012-11-28 16:18:43Z maronga
37	# bugfix: coupling mode was always set to mpi2, typos removed
38	#
39	# 1058 2012-11-21 07:00:35Z raasch
40	# Intel inspector (inspxe) is given the number of PEs instead of the number of
41	# nodes
42	#
43	# 1046 2012-11-09 14:38:45Z maronga
44	# code put under GPL (PALM 3.9)
45	#
46	# 21/03/94 - Siggi - first version finished
47	# 03/03/94 - Siggi - script development started
48	#
49	#--------------------------------------------------------------------------------#
50	# mrun - script for running PALM jobs
51	#--------------------------------------------------------------------------------#
52
53
54
55	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
56
57	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
58	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
59	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
60
61	AddFilenames=""
62	additional_conditions=""
63	add_source_path=""
64	afname=""
65	archive_save=true
66	archive_system=none
67	check_namelist_files=true
68	combine_plot_fields=true
69	compiler_name=""
70	cond1=""
71	cond2=""
72	config_file=.mrun.config
73	coupled_dist=""
74	coupled_mode="mpi1"
75	cpp_opts=""
76	cpp_options=""
77	cpumax=0
78	cpurest=0
79	delete_temporary_catalog=true
80	do_batch=false
81	do_compile=true
82	do_remote=false
83	do_stagein=true
84	do_stageout=true
85	do_trace=false
86	email_notification="none"
87	exclude=""
88	executable=""
89	execution_error=false
90	fimm=false
91	fname=test
92	fromhost=""
93	global_revision=""
94	group_number=none
95	host=""
96	host_file=""
97	hp=""
98	ignore_archive_error=false
99	input_list=""
100	interpreted_config_file=""
101	job_catalog="~/job_queue"
102	job_on_file=""
103	keep_data_from_previous_run=false
104	link_local_input=false
105	link_local_output=false
106	localhost_realname=$(hostname)
107	local_compile=false
108	local_dvrserver_running=.FALSE.
109	locat=normal
110	mainprog=""
111	makefile=""
112	max_par_io_str=""
113	mc=$0
114	while [[ $(echo $mc \| grep -c "/") != 0 ]]
115	do
116	mc=`echo $mc \| cut -f2- -d"/"`
117	done
118	module_calls=""
119	mrun_script_name=$mc
120	netcdf_inc=""
121	netcdf_lib=""
122	netcdf_support=false
123	node_usage=default
124	numprocs=""
125	numprocs_atmos=0
126	numprocs_ocean=0
127	OOPT=""
128	openmp=false
129	output_list=""
130	package_list=""
131	punkte="..........................................................."
132	queue=none
133	read_from_config=""
134	restart_run=false
135	if [[ `hostname` = rte10 ]]
136	then
137	return_addres=133.5.185.60
138	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
139	elif [[ `hostname` = climate0 ]]
140	then
141	return_addres=165.132.26.68
142	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
143	elif [[ `hostname` = urban00 ]]
144	then
145	return_addres=147.46.30.151
146	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
147	else
148	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
149	fi
150	return_password=""
151	return_username=$LOGNAME
152	remotecall=false
153	remote_username=""
154	run_coupled_model=false
155	run_mode=""
156	scirocco=false
157	store_on_archive_system=false
158	striche=" ----------------------------------------------------------------------------"
159	silent=false
160	source_list=""
161	source_path=SOURCE
162	tasks_per_node=""
163	threads_per_task=1
164	tmpcreate=false
165	tmp_data_catalog=""
166	transfer_problems=false
167	usern=$LOGNAME
168	use_openmp=false
169	working_directory=`pwd`
170	TOPT=""
171	XOPT=""
172	zeit=$( date \| cut -c 12-19 )
173
174	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
175	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
176
177	typeset -R30 calltime
178	typeset -L20 spalte1
179	typeset -L40 spalte2
180	typeset -L60 spalte3
181	typeset -L35 string1=`date`
182	typeset -L12 string2=$usern
183	typeset -L12 string3=$localhost_realname
184	typeset -L12 string4
185	typeset -L12 string5
186	typeset -L30 version="MRUN 2.0 Rev$Rev: 1091 $"
187
188
189
190	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
191	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
192
193	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
194	# EXPORTIERT WERDEN
195	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
196	export group_number input_list memory numprocs output_list queue run_mode
197
198
199
200	# FEHLERBEHANDLUNG
201	# BEI EXIT:
202	trap 'rm -rf $working_directory/tmp_mrun
203	if [[ $locat != localhost ]]
204	then
205	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
206	# then
207	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
208	#MRUN-calls on $localhost
209	#
210	#date and time user localhost remotehost termination mrun-command
211	#--------------------------------------------------------------------------------------------------------------------
212	#%STATEND%
213	# chmod 666 ${mrun_path}/statistik/mrun_statistik
214	# fi
215	#
216	# # EINTRAG IN DIE STATISTIK-DATEI
217	# string4=$host
218	# string5=$locat
219	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
220	# then
221	# if [[ $do_batch = true ]]
222	# then
223	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
224	# else
225	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
226	# fi
227	# fi
228	echo " " > /dev/null
229	fi
230
231	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
232	then
233
234	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
235	(( i = 0 ))
236	while (( i < iec ))
237	do
238	(( i = i + 1 ))
239	printf "\n *** Execution of ERROR-command:\n"
240	printf " >>> ${err_command[$i]}\n"
241	eval ${err_command[$i]}
242	done
243	if [[ -n $interpreted_config_file ]] then
244	rm -rf $interpreted_config_file
245	fi
246	if [[ -n .mrun_environment ]] then
247	rm -rf .mrun_environment
248	fi
249	if [[ $tmpcreate = true ]]
250	then
251	printf "\n *** Contents of \"$TEMPDIR\":\n"
252	ls -al; cd
253	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
254	fi
255	if [[ "$dvrserver_id" != "" ]]
256	then
257	echo "+++ killing dvrserver_id=$dvrserver_id"
258	kill $dvrserver_id
259	fi
260	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
261	then
262	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
263	fi
264	printf "\n\n+++ MRUN killed \n\n"
265	elif [[ $locat != control_c ]]
266	then
267	printf "\n\n --> all actions finished\n\n"
268	printf " Bye, bye $usern !!\n\n"
269	fi' exit
270
271
272	# BEI TERMINAL-BREAK:
273	trap 'rm -rf $working_directory/tmp_mrun
274	rm -rf $working_directory/tmp_check_namelist_files
275	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
276	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
277	then
278	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
279	fi
280	if [[ "$dvrserver_id" != "" ]]
281	then
282	echo "+++ killing dvrserver_id=$dvrserver_id"
283	kill $dvrserver_id
284	fi
285	printf "\n+++ MRUN killed by \"^C\" \n\n"
286	locat=control_c
287	exit
288	' 2
289
290
291	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
292	# BEEN SET
293	if [[ "$PALM_BIN" = "" ]]
294	then
295	printf "\n +++ environment variable PALM_BIN has not been set"
296	printf "\n please set it to the directory where the PALM scripts are located"
297	locat=palm_bin; exit
298	fi
299	export PATH=$PALM_BIN:$PATH
300
301
302
303	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
304	# FUER FOLGEJOBS BENOETIGT WIRD
305	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
306	do
307	case $option in
308	(a) afname=$OPTARG;;
309	(A) store_on_archive_system=true; mc="$mc -A";;
310	(b) do_batch=true; mc="$mc -b";;
311	(B) delete_temporary_catalog=false; mc="$mc -B";;
312	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
313	(C) restart_run=true; mc="$mc -C";;
314	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
315	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
316	(F) job_on_file="-D"; mc="$mc -F";;
317	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
318	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
319	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
320	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
321	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
322	(I) ignore_archive_error=true; mc="$mc -I";;
323	(k) keep_data_from_previous_run=true; mc="$mc -k";;
324	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
325	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
326	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
327	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
328	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
329	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
330	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
331	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
332	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
333	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
334	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
335	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
336	(S) read_from_config=false; mc="$mc -S";;
337	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
338	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
339	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
340	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
341	(v) silent=true; mc="$mc -v";;
342	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
343	(x) do_trace=true;set -x; mc="$mc -x";;
344	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
345	(y) ocean_file_appendix=true; mc="$mc -y";;
346	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
347	(z) check_namelist_files=false; mc="$mc -z";;
348	(Z) combine_plot_fields=false; mc="$mc -Z";;
349	(\?) printf "\n +++ unknown option $OPTARG \n"
350	printf "\n --> type \"$0 ?\" for available options \n"
351	locat=parameter;exit;;
352	esac
353	done
354
355
356	# EVTL. POSITIONSPARAMETER EINLESEN
357	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
358	shift OPTIND-1
359
360
361	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
362	if [[ "$1" = "?" ]]
363	then
364	(printf "\n *** mrun can be called as follows:\n"
365	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
366	printf "\n Description of available options:\n"
367	printf "\n Option Description Default-Value"
368	printf "\n -a base name of input files equiv. -d"
369	printf "\n -A archiving when using file-attribute fl"
370	printf "\n -b batch-job on local machine ---"
371	printf "\n -B do not delete temporary directory at end ---"
372	printf "\n -c configuration file .mrun.config"
373	printf "\n -d base name of files attached to program test"
374	printf "\n -D preprocessor(cpp)-directives \"\" "
375	printf "\n -F create remote job file only ---"
376	printf "\n -h execution host $localhost_realname"
377	printf "\n -i INPUT control list \"\" "
378	printf "\n -I archiving errors of previous batch-jobs"
379	printf "\n will be ignored"
380	printf "\n -k keep data from previous run"
381	printf "\n -K additional conditions for controling"
382	printf "\n usage of conditional code and"
383	printf "\n env-variables in configuration file \"\" "
384	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
385	printf "\n -M Makefile name Makefile"
386	printf "\n -n node usage (shared/not_shared) depending on -h"
387	printf "\n -o OUTPUT control list \"\" "
388	printf "\n -O use OpenMP ---"
389	printf "\n -p software package list \"\" "
390	printf "\n -q queue \"$queue\" "
391	printf "\n -r run control list (combines -i -o) \"\" "
392	printf "\n -s filenames of routines to be compiled \"\" "
393	printf "\n must end with .f, .f90, .F, or .c !"
394	printf "\n use \"..\" for more than one file and wildcards"
395	printf "\n -s LM compiles all locally modified files"
396	printf "\n -S config file interpreted by shellscript ---"
397	printf "\n -t allowed cpu-time in seconds (batch) 0"
398	printf "\n -T tasks per node depending on -h"
399	printf "\n -u username on remote machine \"\" "
400	printf "\n -v no prompt for confirmation ---"
401	printf "\n -w maximum parallel io streams as given by -X"
402	printf "\n -x tracing of mrun for debug purposes ---"
403	printf "\n -X # of processors (on parallel machines) 1"
404	printf "\n -y add appendix \"_O\" to all local output"
405	printf "\n files (ocean precursor runs followed by"
406	printf "\n coupled atmosphere-ocean runs) ---"
407	printf "\n -Y run coupled model, \"#1 #2\" with"
408	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
409	printf "\n -z disable a priori parameter file check ---"
410	printf "\n -Z skip combine_plot_fields at the end of "
411	printf "\n the simulation ---"
412	printf "\n "
413	printf "\n Possible values of positional parameter <modus>:"
414	printf "\n \"?\" - this outline \n\n") \| more
415	exit
416	elif [[ "$1" != "" ]]
417	then
418	printf "\n +++ positional parameter $1 unknown \n"
419	locat=parameter; exit
420	fi
421
422
423
424	# KURZE STARTMELDUNG
425	printf "\n*** $version "
426	printf "\n will be executed. Please wait ..."
427
428
429
430	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
431	if [[ ! -f $config_file ]]
432	then
433	printf "\n\n +++ configuration file: "
434	printf "\n $config_file"
435	printf "\n does not exist"
436	locat=connect; exit
437	fi
438
439
440	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
441	line=""
442	grep "%host_identifier" $config_file > tmp_mrun
443	while read line
444	do
445	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
446	then
447	HOSTNAME=`echo $line \| cut -d" " -s -f2`
448	host_identifier=`echo $line \| cut -d" " -s -f3`
449	if [[ $localhost_realname = $HOSTNAME ]]
450	then
451	localhost=$host_identifier
452	break
453	fi
454	fi
455	done < tmp_mrun
456
457	if [[ "$localhost" = "" ]]
458	then
459	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
460	printf "\n for local host \"$localhost_realname\"."
461	printf "\n Please add line"
462	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
463	printf "\n to the configuration file."
464	locat=localhost; exit
465	fi
466
467
468	# HOSTSPEZIFISCHE VARIABLEN SETZEN
469	case $localhost_realname in
470	(r1\|r2\|h01\|b01) archive_system=tivoli;;
471	(cs*) archive_system=ut;;
472	(fimm.bccs.uib.no) fimm=true;;
473	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
474	(scirocco) scirocco=true;;
475	esac
476
477
478
479	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
480	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
481	[[ "$afname" = "" ]] && afname=$fname
482
483
484	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
485	if [[ "$run_mode" != "" ]]
486	then
487	input_list="$input_list $run_mode"
488	output_list="$output_list $run_mode"
489	fi
490
491
492	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
493	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
494	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
495	# STARTET)
496	if [[ "$fromhost" = "" ]]
497	then
498	fromhost=$localhost
499	fi
500
501
502	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
503	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
504	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
505	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
506	if [[ -n $host && "$host" != $localhost ]]
507	then
508	do_batch=true
509	do_remote=true
510	case $host in
511	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
512	(*) printf "\n"
513	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
514	printf "\n is not available"
515	locat=nqs; (( iec = 0 )); exit;;
516	esac
517	else
518	host=$localhost
519	fi
520
521
522	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
523	if [[ -n $additional_conditions ]]
524	then
525	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
526	cond1=`echo $additional_conditions \| cut -d" " -f1`
527	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
528	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
529	if [[ -n $dummy ]]
530	then
531	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
532	locat=options; exit
533	fi
534	block=_$cond1
535	[[ -n $cond2 ]] && block=${block}_$cond2
536	fi
537
538
539	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
540	if [[ $run_coupled_model = true ]]
541	then
542
543	if [[ -n $coupled_dist ]]
544	then
545
546	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
547	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
548
549	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
550	then
551
552	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
553	printf "\n PEs (total) : $numprocs"
554	printf "\n PEs (atmosphere): $numprocs_atmos"
555	printf "\n PEs (ocean) : $numprocs_ocean"
556	locat=coupling; exit
557
558	fi
559
560	else
561
562	(( numprocs_ocean = $numprocs / 2 ))
563	(( numprocs_atmos = $numprocs / 2 ))
564
565	fi
566	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
567
568	# GET coupled_mode FROM THE CONFIG FILE
569	line=""
570	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
571	while read line
572	do
573	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
574	then
575	coupled_mode="mpi2"
576	fi
577	done < tmp_mrun
578
579	fi
580
581
582	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
583	# ARCHIVIERUNG FEHLGESCHLAGEN IST
584	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
585	then
586	if [[ $ignore_archive_error = false ]]
587	then
588	printf "\n +++ data archiving of previous run failed"
589	printf "\n see directory \~/job_queue on remote machine"
590	locat=archive; exit
591	else
592	printf "\n +++ warning: data archiving in a previous run failed"
593	printf "\n MRUN continues, trying to get backup copy"
594	fi
595	fi
596
597
598
599	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
600	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
601	if [[ "$read_from_config" = false ]]
602	then
603
604	[[ $silent = false ]] && printf "\n Reading the configuration file... "
605	while read zeile
606	do
607	[[ $silent = false ]] && printf "."
608
609
610	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
611	# ERSETZEN
612	eval zeile=\"$zeile\"
613
614
615	# INTERPRETATION DER ZEILE
616	if [[ "$(echo $zeile)" = "" ]]
617	then
618	# LEERZEILE, KEINE AKTION
619	continue
620
621	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
622	then
623
624	# ZEILE IST KOMMENTARZEILE
625	true
626
627	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
628	then
629
630	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
631	zeile=$(echo $zeile \| cut -c2-)
632	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
633	var=`echo $zeile \| cut -d" " -f1`
634	value=`echo $zeile \| cut -d" " -s -f2`
635	for_host=`echo $zeile \| cut -d" " -s -f3`
636	for_cond1=`echo $zeile \| cut -d" " -s -f4`
637	for_cond2=`echo $zeile \| cut -d" " -s -f5`
638
639	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
640	then
641
642	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
643	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
644	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
645
646
647	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
648	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
649	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
650	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
651	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
652	# KONFIGURATIONSDATEI
653	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
654	then
655	eval $var=\$value
656
657	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
658	if [[ $do_trace = true ]]
659	then
660	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
661	fi
662	fi
663
664	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
665	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
666	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
667	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
668	if [[ $var = host ]]
669	then
670	if [[ -n $host && "$host" != $localhost ]]
671	then
672	do_batch=true
673	do_remote=true
674	case $host in
675	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
676	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
677	printf "\n is not available"
678	locat=nqs; exit;;
679	esac
680	else
681	host=$localhost
682	fi
683	fi
684
685	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
686	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
687	# DEN PROGRAMMEN BENOETIGT WERDEN
688	export $var
689	fi
690
691
692
693
694	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
695	then
696
697	# ZEILE DEFINIERT ERROR-KOMMANDO
698	(( iec = iec + 1 ))
699	zeile=$(echo $zeile \| cut -c4-)
700	err_command[$iec]="$zeile"
701
702	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
703	then
704
705	# ZEILE DEFINIERT INPUT-KOMMANDO
706	(( iic = iic + 1 ))
707	zeile=$(echo $zeile \| cut -c4-)
708	in_command[$iic]="$zeile"
709
710	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
711	then
712
713	# ZEILE DEFINIERT OUTPUT-KOMMANDO
714	(( ioc = ioc + 1 ))
715	zeile=$(echo $zeile \| cut -c4-)
716	out_command[$ioc]="$zeile"
717
718	else
719
720	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
721	# s2a: in/out - Feld
722	# s2b: loc - Feld (optional)
723	# s2c: tr/ar - Feld (optional)
724	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
725	s1=`echo $zeile \| cut -d" " -f1`
726	s2=`echo $zeile \| cut -d" " -s -f2`
727	s2a=$(echo $s2 \| cut -d":" -f1)
728	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
729	then
730	s2b=""
731	s2c=""
732	else
733	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
734	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
735	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
736	fi
737	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
738	s3=`echo $zeile \| cut -d" " -f3`
739	s4=`echo $zeile \| cut -d" " -s -f4`
740	s5=`echo $zeile \| cut -d" " -s -f5`
741	s6=`echo $zeile \| cut -d" " -s -f6`
742
743
744	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
745	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
746	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
747	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
748	# HANDEN SEIN MUSS (D.H. s2b = loc)
749	IFSALT="$IFS"; IFS="$IFS:"
750	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
751	then
752	found=false
753	for actual in $input_list
754	do
755	for formal in $s3
756	do
757	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
758	done
759	done
760	if [[ $found = true ]]
761	then
762	(( iin = iin + 1 ))
763	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
764	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
765	extin[$iin]=$s6
766	fi
767	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
768	then
769	found=false
770	for actual in $output_list
771	do
772	for formal in $s3
773	do
774	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
775	done
776	done
777	if [[ $found = true ]]
778	then
779	(( iout = iout + 1 ))
780	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
781	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
782	fi
783	elif [[ "$s2a" != in && "$s2a" != out ]]
784	then
785	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
786	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
787	locat=connect; exit
788	fi
789	IFS="$IFSALT"
790	fi
791	done < $config_file
792
793	else
794
795
796	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
797	[[ $silent = false ]] && printf "..."
798	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
799	export interpreted_config_file=.icf.$RANDOM
800
801
802
803	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
804	# VERFUEGUNG STELLEN
805	cat > .mrun_environment << %%END%%
806	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
807	config_file = '$config_file', do_remote = '$do_remote',
808	do_trace = '$do_trace', host = '$host',
809	input_list = '$input_list', icf = '$interpreted_config_file',
810	localhost = '$localhost', output_list = '$output_list' /
811
812	%%END%%
813
814	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
815	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
816	mrun_memory=$memory
817	mrun_group_number=$group_number
818	mrun_cpumax=$cpumax
819	mrun_numprocs=$numprocs
820
821	if [[ $localhost_realname = "sx-fep" ]]
822	then
823	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
824	else
825
826	if [[ "$host" != $localhost ]]
827	then
828
829	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
830	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
831	if [[ $? != 0 ]]
832	then
833	printf "\n\n +++ no interpret_config found"
834	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
835	locat=interpret_config; exit
836	fi
837	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
838	$interpret_config_executable
839
840	else
841
842	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
843	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
844	then
845	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
846	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
847	locat=interpret_config; exit
848	else
849	interpret_config${block}.x
850	fi
851
852	fi
853	fi
854	rm .mrun_environment
855
856
857	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
858	chmod u+x $interpreted_config_file
859	export PATH=$PATH:.
860	. $interpreted_config_file
861	rm $interpreted_config_file
862
863
864	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
865	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
866	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
867	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
868	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
869	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
870	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
871
872	fi
873
874
875	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
876	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
877	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
878	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
879	if [[ "$SOURCES_COMPLETE" = "" ]]
880	then
881
882	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
883	# VEREINBART WURDE
884	source_path=""
885	line=""
886	grep "%source_path" $config_file > tmp_mrun
887	while read line
888	do
889	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
890	then
891	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
892	then
893	global_source_path=`echo $line \| cut -d" " -f2`
894	fi
895	fi
896	done < tmp_mrun
897
898	line=""
899	found=false
900	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
901	while read line
902	do
903	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
904	then
905	if [[ $found = true ]]
906	then
907	printf "\n\n +++ more than one source path found in configuration file"
908	printf "\n for local host \"$localhost\" "
909	locat=source_path; exit
910	fi
911	source_path=`echo $line \| cut -d" " -f2`
912	found=true
913	fi
914	done < tmp_mrun
915	rm tmp_mrun
916
917	if [[ "$source_path" = "" ]]
918	then
919	if [[ "$global_source_path" != "" ]]
920	then
921	source_path=$global_source_path
922	else
923	printf "\n\n +++ no source path found in configuration file"
924	printf "\n for local host \"$localhost\" "
925	locat=source_path; exit
926	fi
927	fi
928	eval source_path=$source_path
929
930	if [[ ! -d $source_path ]]
931	then
932	printf "\n\n +++ source path \"$source_path\" on local host"
933	printf "\n \"$localhost\" does not exist"
934	locat=source_path; exit
935	fi
936
937	fi
938
939
940	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
941	# DURCH OPTION -G MITGETEILT)
942	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
943	then
944	global_revision=`svnversion $source_path 2>/dev/null`
945	global_revision="Rev: $global_revision"
946	fi
947
948
949	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
950	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
951	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
952	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
953	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
954	if [[ -n $host && "$host" != $localhost ]]
955	then
956	do_batch=true
957	do_remote=true
958	case $host in
959	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
960	(*) printf "\n"
961	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
962	printf "\n is not available"
963	locat=nqs; (( iec = 0 )); exit;;
964	esac
965	else
966	host=$localhost
967	fi
968
969
970	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
971	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
972	then
973
974	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
975	if [[ ! -n $numprocs ]]
976	then
977	printf "\n"
978	printf "\n +++ option \"-K parallel\" requires additional specification"
979	printf "\n of the number of processors to be used by"
980	printf "\n mrun-option \"-X\" or by environment-variable"
981	printf "\n \"numprocs\" in the configuration file"
982	locat=numprocs; (( iec = 0 )); exit
983	fi
984
985	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
986	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
987	# GESAMTPROZESSORANZAHL IST
988	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
989	then
990	printf "\n"
991	printf "\n +++ option \"-T\" (tasks per node) is missing"
992	printf "\n set -T option or define tasks_per_node in the config file"
993	locat=tasks_per_node; (( iec = 0 )); exit
994	fi
995	if [[ $host != lcflow && $host != lcxt5m ]]
996	then
997	(( ival = $tasks_per_node ))
998	(( pes = numprocs ))
999	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1000	# then
1001	# (( pes = pes - 1 ))
1002	# fi
1003	(( ii = pes / ival ))
1004	if (( pes - ii * ival > 0 ))
1005	then
1006	printf "\n"
1007	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1008	printf "\n divisor of the total number of processors (option \"-X\")"
1009	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1010	locat=tasks_per_node; (( iec = 0 )); exit
1011	fi
1012	fi
1013
1014
1015	# IBMY HAT NUR EINEN KNOTEN
1016	if [[ $host = ibmy ]]
1017	then
1018	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1019	then
1020	printf "\n"
1021	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1022	printf "\n total number of processors (option \"-X\")"
1023	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1024	locat=tasks_per_node; (( iec = 0 )); exit
1025	fi
1026	fi
1027
1028
1029	# SETTINGS FOR SUBJOB-COMMAND
1030	TOPT="-T $tasks_per_node"
1031	OOPT="-O $threads_per_task"
1032
1033	# GESAMTZAHL DER KNOTEN BESTIMMEN
1034	if [[ "$tasks_per_node" != "" ]]
1035	then
1036	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1037	fi
1038
1039	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1040	# SETZEN
1041	if [[ $node_usage = default ]]
1042	then
1043	if [[ $host = ibms ]]
1044	then
1045	node_usage=shared
1046	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1047	then
1048	node_usage=singlejob
1049	else
1050	node_usage=not_shared
1051	fi
1052	fi
1053
1054	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1055	then
1056	printf "\n"
1057	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1058	printf "\n \"shared\" or \"not_shared\""
1059	locat=tasks_per_node; (( iec = 0 )); exit
1060	fi
1061
1062	fi
1063
1064	# PRUEFEN, OB HOSTFILE EXISTIERT
1065	if [[ -n $hostfile ]]
1066	then
1067	if [[ ! -f $hostfile ]]
1068	then
1069	printf "\n"
1070	printf "\n +++ hostfile \"$hostfile\" does not exist"
1071	locat=hostfile; exit
1072	fi
1073	fi
1074
1075	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1076	if [[ $host = ibmy && $do_remote = false ]]
1077	then
1078	if [[ ! -f $HOME/.rhosts ]]
1079	then
1080	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1081	printf "\n\n *** file:"
1082	printf "\n $HOME/.rhosts"
1083	printf "\n was created\n"
1084	fi
1085	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1086	then
1087	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1088	printf "\n\n *** file:"
1089	printf "\n $HOME/.rhosts"
1090	printf "\n was extended by the name of the current host\n"
1091	fi
1092	fi
1093
1094
1095	# Set default value for the maximum number of parallel io streams
1096	if [[ "$maximum_parallel_io_streams" = "" ]]
1097	then
1098	maximum_parallel_io_streams=$numprocs
1099	fi
1100
1101
1102	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1103	if [[ $queue = none ]]
1104	then
1105	case $host in
1106	(ibmh) queue=no_class;;
1107	(ibmkisti) queue=class.32plus;;
1108	(ibmy) queue=parallel;;
1109	(lckiaps) queue=normal;;
1110	(lckyoto) queue=ph;;
1111	(lckyut) queue=cx-dbg;;
1112	(lcsgib) queue=testq;;
1113	(lcsgih) queue=testq;;
1114	(lctit) queue=S;;
1115	(nech) queue=none;;
1116	(necriam) queue=SP;;
1117	(unics) queue=unics;;
1118	esac
1119	fi
1120
1121
1122	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1123	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1124	# ERMITTELN
1125	(( i = 0 ))
1126	while (( i < iin ))
1127	do
1128	(( i = i + 1 ))
1129	(( maxcycle = 0 ))
1130
1131	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1132	if [[ "${actionin[$i]}" = di ]]
1133	then
1134	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1135	# REM-MASCHINE AUSWERTEN
1136	eval filename=${pathin[$i]}/${endin[$i]}
1137	else
1138	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1139	# REM-MASCHINE AUSWERTEN
1140	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1141	fi
1142	eval pathname=${pathin[$i]}
1143
1144	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1145	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1146	then
1147	filename_input=$filename
1148	fi
1149
1150	# PRUEFEN AUF VORHANDENSEIN
1151	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1152	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1153	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1154	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1155	then
1156	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1157	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1158	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1159	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1160	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1161	if [[ "${transin[$i]}" != "locopt" ]]
1162	then
1163	printf "\n\n +++ INPUT-file: "
1164	if [[ "${extin[$i]}" = "" ]]
1165	then
1166	printf "\n $filename"
1167	else
1168	printf "\n $filename.${extin[$i]}"
1169	fi
1170	printf "\n does not exist\n"
1171	locat=input; exit
1172	else
1173	transin[$i]="unavailable"
1174	fi
1175	else
1176
1177	# ZYKLUSNUMMER FESTSTELLEN
1178	ls -1 -d $filename > filelist 2>/dev/null
1179	ls -1 -d $filename.* >> filelist 2>/dev/null
1180	while read zeile
1181	do
1182	cycle=$(print $zeile \| cut -f2 -d".")
1183	if [[ "$cycle" = "$zeile" ]]
1184	then
1185	(( icycle = 0 ))
1186	elif [[ "$cycle" = "${extin[$i]}" ]]
1187	then
1188	(( icycle = 0 ))
1189	else
1190	(( icycle = $cycle ))
1191	fi
1192	if (( icycle > maxcycle ))
1193	then
1194	(( maxcycle = icycle ))
1195	file_to_be_used=$zeile
1196	fi
1197	done <filelist
1198	rm filelist
1199
1200	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1201	if (( maxcycle > 0 ))
1202	then
1203	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1204	then
1205	filename=${filename}.$maxcycle.${extin[$i]}
1206	else
1207	filename=${filename}.$maxcycle
1208	fi
1209	else
1210	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1211	then
1212	filename=${filename}.${extin[$i]}
1213	fi
1214	fi
1215
1216	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1217	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1218	absnamein[$i]=$filename
1219	if (( maxcycle > 0 ))
1220	then
1221	if [[ "${actionin[$i]}" = di ]]
1222	then
1223	frelin[$i]=${endin[$i]}.$maxcycle
1224	else
1225	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1226	fi
1227	else
1228	if [[ "${actionin[$i]}" = di ]]
1229	then
1230	frelin[$i]=${endin[$i]}
1231	else
1232	frelin[$i]=${afname}${endin[$i]}
1233	fi
1234	fi
1235
1236	fi
1237	done
1238
1239	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1240	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1241	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1242	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1243	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1244	(( i = 0 ))
1245	while (( i < iout ))
1246	do
1247	(( i = i + 1 ))
1248	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1249	then
1250	if [[ "${actionout[$i]}" = tr ]]
1251	then
1252	actionout[$i]=""
1253	elif [[ "${actionout[$i]}" = trpe ]]
1254	then
1255	actionout[$i]=pe
1256	elif [[ "${actionout[$i]}" = tra ]]
1257	then
1258	actionout[$i]=a
1259	fi
1260	(( maxcycle = 0 ))
1261	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1262	eval catalogname=${pathout[$i]}
1263	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1264	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1265	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1266	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1267	then
1268
1269	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1270	if cat /dev/null > $filename
1271	then
1272	rm $filename
1273	else
1274
1275	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1276	if [[ ! -d $catalogname ]]
1277	then
1278	if mkdir -p $catalogname
1279	then
1280	printf "\n\n *** directory:"
1281	printf "\n $catalogname"
1282	printf "\n was created\n"
1283	else
1284	printf "\n\n +++ OUTPUT-file:"
1285	printf "\n $filename"
1286	printf "\n cannot be created, because directory does not exist"
1287	printf "\n and cannot be created either"
1288	printf "\n"
1289	locat=output ; exit
1290	fi 2>/dev/null
1291	else
1292	printf "\n\n +++ OUTPUT-file:"
1293	printf "\n $filename"
1294	printf "\n cannot be created, although directory exists"
1295	printf "\n"
1296	locat=output ; exit
1297	fi
1298	fi 2>/dev/null
1299	else
1300
1301	# ZYKLUSNUMMER FESTSTELLEN
1302	ls -1 -d $filename > filelist 2>/dev/null
1303	ls -1 -d $filename.* >> filelist 2>/dev/null
1304	while read zeile
1305	do
1306	cycle=$(print $zeile \| cut -f2 -d".")
1307	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1308	then
1309	(( icycle = 1 ))
1310	else
1311	(( icycle = $cycle + 1 ))
1312	fi
1313	if (( icycle > maxcycle ))
1314	then
1315	(( maxcycle = icycle ))
1316	fi
1317	done <filelist
1318	rm filelist
1319	fi
1320
1321	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1322	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1323	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1324	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1325	if [[ "${actionout[$i]}" != a ]]
1326	then
1327	if (( maxcycle > 0 ))
1328	then
1329	filename=${filename}.$maxcycle
1330	if cat /dev/null > $filename
1331	then
1332	rm $filename
1333	else
1334	printf "\n +++ OUTPUT-file:"
1335	printf "\n $filename"
1336	printf "\n cannot be created"
1337	locat=output ; exit
1338	fi
1339	fi
1340	else
1341	(( maxcycle = maxcycle - 1 ))
1342	if (( maxcycle > 0 ))
1343	then
1344	filename=${filename}.$maxcycle
1345	fi
1346	fi
1347
1348	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1349	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1350	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1351	pathout[$i]=$filename
1352	if (( maxcycle > 0 ))
1353	then
1354	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1355	else
1356	frelout[$i]=${fname}${endout[$i]}
1357	fi
1358
1359	fi
1360	done
1361
1362
1363	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1364	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1365	then
1366	if [[ "$dvr_inc" = "" ]]
1367	then
1368	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1369	printf "\n This is required for the dvrp_graphics package.\n"
1370	locat=dvr; exit
1371	fi
1372	if [[ "$dvr_lib" = "" ]]
1373	then
1374	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1375	printf "\n This is required for the dvrp_graphics package.\n"
1376	locat=dvr; exit
1377	fi
1378	fi
1379
1380
1381	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1382	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1383	# UEBERSETZT ZU WERDEN)
1384	if [[ "$mainprog" = "" && "$executable" = "" ]]
1385	then
1386	printf "\n +++ neither main program nor executable defined"
1387	locat=source; exit
1388	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1389	then
1390	printf "\n +++ main program as well as executable defined"
1391	locat=source; exit
1392	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1393	then
1394	do_compile=false
1395	fi
1396
1397
1398	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1399	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1400	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1401	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1402	then
1403	rm -rf SOURCES_FOR_RUN_$fname
1404	mkdir SOURCES_FOR_RUN_$fname
1405	fi
1406
1407
1408	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1409	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1410	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1411	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1412	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1413	then
1414
1415	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1416
1417	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1418	then
1419
1420	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1421	source_list=""
1422	cd $source_path
1423
1424
1425	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1426	if [[ ! -d .svn ]]
1427	then
1428	printf "\n\n +++ source directory"
1429	printf "\n \"$source_path\" "
1430	printf "\n is not under control of \"subversion\"."
1431	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1432	fi
1433
1434
1435	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1436	Filenames=""
1437	svn status > tmp_mrun
1438	while read line
1439	do
1440	firstc=`echo $line \| cut -c1`
1441	if [[ $firstc = M \|\| $firstc = "?" ]]
1442	then
1443	Name=`echo "$line" \| cut -c8-`
1444	extension=`echo $Name \| cut -d. -f2`
1445	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1446	then
1447	Filenames="$Filenames "$Name
1448	fi
1449	fi
1450	done < tmp_mrun
1451
1452
1453	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1454	for dateiname in $Filenames
1455	do
1456	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1457	source_list=$source_list"$dateiname "
1458	done
1459
1460	cd - > /dev/null
1461
1462
1463	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1464	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1465	# VORHANDEN
1466	elif [[ "$source_list" != "" && $restart_run != true ]]
1467	then
1468
1469	cd $source_path
1470
1471	for filename in $source_list
1472	do
1473
1474	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1475	if [[ $(print $filename \| grep -c "/") != 0 ]]
1476	then
1477	printf "\n +++ source code file: $filename"
1478	printf "\n must not contain (\"/\") "
1479	locat=source; exit
1480	fi
1481
1482	if [[ ! -f $filename ]]
1483	then
1484	printf "\n +++ source code file: $filename"
1485	printf "\n does not exist"
1486	locat=source; exit
1487	else
1488	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1489	fi
1490
1491	done
1492
1493	cd - > /dev/null
1494
1495	fi
1496
1497
1498	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1499	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1500	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1501	if [[ $restart_run != true ]]
1502	then
1503
1504	if [[ ! -f "$source_path/$mainprog" ]]
1505	then
1506	printf "\n\n +++ main program: $mainprog"
1507	printf "\n does not exist in source directory"
1508	printf "\n \"$source_path\"\n"
1509	locat=source; exit
1510	else
1511	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1512	then
1513	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1514	source_list=${mainprog}" $source_list"
1515	fi
1516	fi
1517	fi
1518
1519
1520	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1521	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1522	if [[ "$restart_run" != true ]]
1523	then
1524	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1525	if [[ ! -f $makefile ]]
1526	then
1527	printf "\n +++ file \"$makefile\" does not exist"
1528	locat=make; exit
1529	else
1530	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1531	fi
1532	fi
1533
1534
1535	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1536	if [[ $restart_run != true && "$add_source_path" != "" ]]
1537	then
1538
1539	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1540	if [[ ! -d $add_source_path ]]
1541	then
1542	printf "\n\n +++ WARNING: additional source code directory"
1543	printf "\n \"$add_source_path\" "
1544	printf "\n does not exist or is not a directory."
1545	printf "\n No source code will be used from this directory!\n"
1546	add_source_path=""
1547	if [[ $silent == false ]]
1548	then
1549	sleep 3
1550	fi
1551	else
1552
1553	cd $add_source_path
1554	found=false
1555
1556	Names=$(ls -1 *.f90 2>&1)
1557	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1558	Names=$(ls -1 *.F90 2>&1)
1559	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1560	Names=$(ls -1 *.F 2>&1)
1561	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1562	Names=$(ls -1 *.f 2>&1)
1563	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1564	Names=$(ls -1 *.c 2>&1)
1565	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1566
1567	cd - > /dev/null
1568	cd SOURCES_FOR_RUN_$fname
1569
1570	# COPY MAKEFILE IF EXISTING
1571	if [[ -f $add_source_path/Makefile ]]
1572	then
1573	printf "\n\n *** user Makefile from directory"
1574	printf "\n \"$add_source_path\" is used \n"
1575	if [[ $silent == false ]]
1576	then
1577	sleep 1
1578	fi
1579	cp $add_source_path/Makefile .
1580	fi
1581
1582	for dateiname in $AddFilenames
1583	do
1584	if [[ -f $dateiname ]]
1585	then
1586	printf "\n +++ source code file \"$dateiname\" found in additional"
1587	printf "\n source code directory \"$add_source_path\" "
1588	printf "\n but was also given with option \"-s\" which means that it should be taken"
1589	printf "\n from directory \"$source_path\"."
1590	locat=source; exit
1591	fi
1592
1593	cp $add_source_path/$dateiname .
1594	source_list="$source_list $dateiname"
1595
1596	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1597	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1598	then
1599	printf "\n\n +++ user file \"$dateiname\" "
1600	printf "\n is not listed in Makefile \n"
1601	locat=source; exit
1602	else
1603
1604	# Default User-Interface von der Liste entfernen, falls Datei
1605	# ein User-Interface enthaelt
1606	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1607	# then
1608	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1609	# then
1610	# rm -rf user_interface.f90
1611	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1612	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1613	# printf "\n since a user-interface is found in file"
1614	# printf "\n \"$add_source_path/$dateiname\" \n"
1615	# sleep 3
1616	# else
1617	if [[ $found = false ]]
1618	then
1619	found=true
1620	printf "\n\n *** following user file(s) added to the"
1621	printf " files to be translated:\n "
1622	fi
1623	printf "$dateiname "
1624	if [[ $silent == false ]]
1625	then
1626	sleep 0.5
1627	fi
1628
1629	fi
1630	done
1631	[[ $found = true ]] && printf "\n"
1632	cd - > /dev/null
1633	fi
1634	fi
1635
1636
1637	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1638	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1639	if [[ $restart_run != true && -n $package_list ]]
1640	then
1641
1642	cd $source_path
1643
1644	for package in $package_list
1645	do
1646
1647	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1648
1649	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1650	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1651	# LIEFERT
1652	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1653
1654
1655	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1656	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1657	for source_list_name in $package_source_list
1658	do
1659	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1660	then
1661
1662	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1663	ending=`echo $source_list_name \| cut -f2 -d.`
1664	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1665	then
1666	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1667	source_list="$source_list $source_list_name"
1668	fi
1669	fi
1670	done
1671	done
1672
1673	cd - > /dev/null
1674	fi
1675
1676
1677	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1678	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1679	# if [[ "$restart_run" != true ]]
1680	# then
1681	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1682	# if [[ ! -f $makefile ]]
1683	# then
1684	# printf "\n +++ file \"$makefile\" does not exist"
1685	# locat=make; exit
1686	# else
1687	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1688	# fi
1689	# fi
1690
1691	fi # do_compile=true
1692
1693
1694	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1695	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1696	if [[ $do_compile = true ]]
1697	then
1698
1699	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1700	# ZUSAMMENSETZEN
1701	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1702	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1703	then
1704	cpp_options="${cpp_options},-D__ibm=__ibm"
1705	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1706	then
1707	cpp_options="$cpp_options -D__nec"
1708	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1709	then
1710	cpp_options="$cpp_options -D__lc"
1711	else
1712	cpp_options="$cpp_options -D__$localhost"
1713	fi
1714
1715	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1716	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1717	then
1718	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1719	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1720	else
1721	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1722	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1723	fi
1724
1725	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1726	if [[ -n $package_list ]]
1727	then
1728	for package in $package_list
1729	do
1730	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1731	then
1732	if [[ $package != "dvrp_graphics+1PE" ]]
1733	then
1734	cpp_options="${cpp_options},-D__$package=__$package"
1735	else
1736	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1737	export use_seperate_pe_for_dvrp_output=true
1738	fi
1739	else
1740	if [[ $package != "dvrp_graphics+1PE" ]]
1741	then
1742	cpp_options="$cpp_options -D__$package"
1743	else
1744	cpp_options="$cpp_options -D__dvrp_graphics"
1745	export use_seperate_pe_for_dvrp_output=true
1746	fi
1747	fi
1748	done
1749	fi
1750
1751	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1752	if [[ -n $cpp_opts ]]
1753	then
1754	for popts in $cpp_opts
1755	do
1756	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1757	then
1758	cpp_options="${cpp_options},-D__$popts=__$popts"
1759	else
1760	cpp_options="$cpp_options -D__$popts"
1761	fi
1762	done
1763	fi
1764
1765	else
1766
1767
1768	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1769	if [[ $do_remote = false ]]
1770	then
1771	if [[ ! -f $executable ]]
1772	then
1773	printf "\n +++ executable file: $executable"
1774	printf "\n does not exist"
1775	locat=executable; exit
1776	fi
1777	fi
1778	fi
1779
1780
1781	# JOBMODUS FESTSTELLEN
1782	if [[ "$ENVIRONMENT" = BATCH ]]
1783	then
1784	jobmo=BATCH
1785	else
1786	jobmo=INTERACTIVE
1787	fi
1788
1789
1790	# no interactive runs on lctit
1791	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1792	then
1793	printf "\n +++ no interactive runs allowed on host \"$host\" "
1794	printf "\n please submit batch job using mrun option \"-b\" \n"
1795	locat=normal; exit
1796	fi
1797
1798
1799	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1800	# DURCH BENUTZER ANDERWEITIG VEREINBART
1801	if [[ "$compiler_name" = "" ]]
1802	then
1803
1804	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1805	locat=compiler_name; exit
1806
1807	fi
1808
1809
1810	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1811	[[ $localhost = necriam ]] && compiler_name=mpif90
1812
1813
1814
1815	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1816	kennung=$RANDOM
1817	if [[ "$tmp_user_catalog" = "" ]]
1818	then
1819	if [[ $localhost = ibmh ]]
1820	then
1821	tmp_user_catalog=$SCRATCH
1822	elif [[ $localhost = nech ]]
1823	then
1824	tmp_user_catalog=$WRKSHR
1825	else
1826	tmp_user_catalog=/tmp
1827	fi
1828	fi
1829	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1830
1831
1832	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1833	# BESTIMMEN
1834	if [[ "$tmp_data_catalog" = "" ]]
1835	then
1836	if [[ $localhost = nech ]]
1837	then
1838	tmp_data_catalog=$WRKSHR/mrun_restart_data
1839	else
1840	tmp_data_catalog=/tmp/mrun_restart_data
1841	fi
1842	fi
1843
1844
1845	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1846	# ERSETZEN
1847	if [[ $do_remote = false && $do_compile = true ]]
1848	then
1849	eval fopts=\"$fopts\"
1850	eval lopts=\"$lopts\"
1851	fi
1852
1853
1854
1855	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1856	fopts="$fopts $netcdf_inc $dvr_inc"
1857	lopts="$lopts $netcdf_lib $dvr_lib"
1858	ROPTS="$ropts"
1859	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1860	# then
1861	XOPT="-X $numprocs"
1862	# fi
1863
1864
1865
1866	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1867	# GRAMM BENOETIGT
1868	done=false
1869	while [[ $done = false ]]
1870	do
1871	cputime=$cpumax
1872	if (( $cputime == 0 ))
1873	then
1874	if [[ $do_batch = true ]]
1875	then
1876	printf "\n +++ cpu-time is undefined"
1877	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1878	printf "\n >>> "
1879	read cputime 1>/dev/null 2>&1
1880	else
1881	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1882	fi
1883	else
1884	done=true
1885	fi
1886	cpumax=$cputime
1887	done
1888
1889	(( minuten = cputime / 60 ))
1890	(( sekunden = cputime - minuten * 60 ))
1891
1892
1893	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1894	if [[ $do_batch = true ]]
1895	then
1896	done=false
1897	while [[ $done = false ]]
1898	do
1899	if (( memory == 0 ))
1900	then
1901	printf "\n +++ memory demand is undefined"
1902	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1903	printf "\n >>> "
1904	read memory 1>/dev/null 2>&1
1905	else
1906	done=true
1907	fi
1908	done
1909	fi
1910
1911
1912	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1913	if [[ $do_remote = true && -z $remote_username ]]
1914	then
1915	while [[ -z $remote_username ]]
1916	do
1917	printf "\n +++ username on remote host \"$host\" is undefined"
1918	printf "\n >>> Please type username:"
1919	printf "\n >>> "
1920	read remote_username
1921	done
1922	mc="$mc -u$remote_username"
1923	fi
1924
1925	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1926	if [[ "$login_init_cmd" != "" ]]
1927	then
1928	export init_cmds="${login_init_cmd};"
1929	fi
1930
1931
1932	# set module load command and export for subjob
1933	if [[ "$modules" != "" ]]
1934	then
1935	if [[ $host = lctit ]]
1936	then
1937	export module_calls=". $modules"
1938	else
1939	export module_calls="module load ${modules};"
1940	fi
1941	fi
1942
1943	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1944	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1945	then
1946	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1947	then
1948	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1949	fi
1950	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1951	# then
1952	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1953	# echo "*** module_calls = $module_calls"
1954	# fi
1955	fi
1956
1957
1958	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1959	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1960	then
1961	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1962	then
1963	mpilib=mpt
1964	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1965	then
1966	mpilib=mvapich
1967	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1968	then
1969	mpilib=impi
1970	fi
1971	fi
1972
1973
1974
1975	###########################################################################
1976	# HEADER-AUSGABE
1977	###########################################################################
1978
1979
1980	calltime=$(date)
1981	printf "\n"
1982	# [[ $silent = false ]] && clear
1983	printf "#--------------------------------------------------------------# \n"
1984	printf "\| $version$calltime \| \n"
1985	printf "\| \| \n"
1986	spalte1="called on:"; spalte2=$localhost_realname
1987	printf "\| $spalte1$spalte2 \| \n"
1988	if [[ $local_compile = false ]]
1989	then
1990	if [[ $do_remote = true ]]
1991	then
1992	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1993	else
1994	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1995	fi
1996	else
1997	spalte1="compiling test only!"; spalte2=""
1998	fi
1999	printf "\| $spalte1$spalte2 \| \n"
2000	if [[ -n $numprocs ]]
2001	then
2002	spalte1="number of PEs:"; spalte2=$numprocs
2003	printf "\| $spalte1$spalte2 \| \n"
2004	fi
2005	if [[ -n $tasks_per_node ]]
2006	then
2007	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2008	printf "\| $spalte1$spalte2 \| \n"
2009	fi
2010	if [[ $maximum_parallel_io_streams != $numprocs ]]
2011	then
2012	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2013	printf "\| $spalte1$spalte2 \| \n"
2014	fi
2015	if [[ $use_openmp = true ]]
2016	then
2017	spalte1="threads per task:"; spalte2="$threads_per_task"
2018	printf "\| $spalte1$spalte2 \| \n"
2019	fi
2020	printf "\| \| \n"
2021	if [[ $do_compile = true ]]
2022	then
2023	if [[ "$mopts" != "" ]]
2024	then
2025	spalte1="make options:"; spalte2=$mopts
2026	printf "\| $spalte1$spalte2 \| \n"
2027	zeile=$(echo "$mopts" \| cut -c41-)
2028	while [[ "$zeile" != "" ]]
2029	do
2030	spalte1=""
2031	spalte2=$zeile
2032	printf "\| $spalte1$spalte2 \| \n"
2033	zeile=$(echo "$zeile" \| cut -c41-)
2034	done
2035	fi
2036
2037	spalte1="cpp directives:"; spalte2=$cpp_options
2038	printf "\| $spalte1$spalte2 \| \n"
2039	zeile=$(echo "$cpp_options" \| cut -c41-)
2040	while [[ "$zeile" != "" ]]
2041	do
2042	spalte1=""
2043	spalte2=$zeile
2044	printf "\| $spalte1$spalte2 \| \n"
2045	zeile=$(echo "$zeile" \| cut -c41-)
2046	done
2047
2048	spalte1="compiler options:"; spalte2="$fopts"
2049	printf "\| $spalte1$spalte2 \| \n"
2050	zeile=$(echo "$fopts" \| cut -c41-)
2051	while [[ "$zeile" != "" ]]
2052	do
2053	spalte1=""
2054	spalte2=$zeile
2055	printf "\| $spalte1$spalte2 \| \n"
2056	zeile=$(echo "$zeile" \| cut -c41-)
2057	done
2058
2059	spalte1="linker options:"; spalte2=$lopts
2060	printf "\| $spalte1$spalte2 \| \n"
2061	zeile=$(echo "$lopts" \| cut -c41-)
2062	while [[ "$zeile" != "" ]]
2063	do
2064	spalte1=""
2065	spalte2=$zeile
2066	printf "\| $spalte1$spalte2 \| \n"
2067	zeile=$(echo "$zeile" \| cut -c41-)
2068	done
2069
2070	spalte1="modules to be load:"; spalte2=$modules
2071	printf "\| $spalte1$spalte2 \| \n"
2072	zeile=$(echo "$modules" \| cut -c41-)
2073	while [[ "$zeile" != "" ]]
2074	do
2075	spalte1=""
2076	spalte2=$zeile
2077	printf "\| $spalte1$spalte2 \| \n"
2078	zeile=$(echo "$zeile" \| cut -c41-)
2079	done
2080
2081	spalte1="main program":; spalte2=$mainprog
2082	printf "\| $spalte1$spalte2 \| \n"
2083	else
2084	spalte1=executable:; spalte2=$executable
2085	printf "\| $spalte1$spalte2 \| \n"
2086	fi
2087	printf "\| \| \n"
2088	spalte1="base name of files":; spalte2=$fname
2089	printf "\| $spalte1$spalte2 \| \n"
2090	if [[ $fname != $afname ]]
2091	then
2092	spalte1="base name of input files":; spalte2=$afname
2093	printf "\| $spalte1$spalte2 \| \n"
2094	fi
2095	spalte1="INPUT control list":; spalte2=$input_list
2096	printf "\| $spalte1$spalte2 \| \n"
2097	spalte1="OUTPUT control list":; spalte2=$output_list
2098	printf "\| $spalte1$spalte2 \| \n"
2099
2100	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2101	then
2102	spalte1="memory demand / PE":; spalte2="$memory MB"
2103	printf "\| $spalte1$spalte2 \| \n"
2104	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2105	printf "\| $spalte1$spalte2 \| \n"
2106	fi
2107
2108	if [[ $do_compile = true ]]
2109	then
2110	printf "\| \| \n"
2111	printf "\| Files to be compiled: \| \n"
2112	zeile=$source_list
2113	while [[ "$zeile" != "" ]]
2114	do
2115	spalte3=$zeile
2116	printf "\| $spalte3 \| \n"
2117	zeile=$(echo "$zeile" \| cut -c61-)
2118	done
2119	fi
2120	printf "#--------------------------------------------------------------#"
2121
2122
2123
2124	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2125	if [[ $do_trace = true ]]
2126	then
2127	(( i = 0 ))
2128	while (( i < iin ))
2129	do
2130	(( i = i + 1 ))
2131	if (( i == 1 ))
2132	then
2133	printf "\n\n >>> INPUT-file assignments:\n"
2134	fi
2135	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2136	done
2137	(( i = 0 ))
2138	while (( i < iout ))
2139	do
2140	(( i = i + 1 ))
2141	if (( i == 1 ))
2142	then
2143	printf "\n\n >>> OUTPUT-file assignments:\n"
2144	fi
2145	printf "\n ${localout[$i]} : ${pathout[$i]}"
2146	done
2147	(( i = 0 ))
2148	while (( i < iic ))
2149	do
2150	(( i = i + 1 ))
2151	if (( i == 1 ))
2152	then
2153	printf "\n\n >>> INPUT-commands:\n"
2154	fi
2155	printf "\n ${in_command[$i]}"
2156	done
2157	(( i = 0 ))
2158	while (( i < ioc ))
2159	do
2160	(( i = i + 1 ))
2161	if (( i == 1 ))
2162	then
2163	printf "\n\n >>> OUTPUT-commands:\n"
2164	fi
2165	printf "\n ${out_command[$i]}"
2166	done
2167	fi
2168
2169
2170	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2171	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2172	then
2173	antwort=dummy
2174	printf "\n\n"
2175	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2176	do
2177	printf " >>> everything o.k. (y/n) ? "
2178	read antwort
2179	done
2180	if [[ $antwort = n \|\| $antwort = N ]]
2181	then
2182	locat=user_abort; (( iec = 0 )); exit
2183	fi
2184	if [[ $do_batch = true ]]
2185	then
2186	printf " >>> batch-job will be created and submitted"
2187	else
2188	if [[ $local_compile = false ]]
2189	then
2190	printf " >>> MRUN will now continue to execute on this machine"
2191	else
2192	printf " >>> a test compilation will now be carried out on this machine"
2193	fi
2194	fi
2195	fi
2196
2197	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2198
2199	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2200	check_depository="${working_directory}/trunk/UTIL"
2201	check_sources="${working_directory}/tmp_check_namelist_files"
2202	skip_check=false
2203
2204	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2205	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2206	then
2207	skip_check=true
2208	reason="run on remote host or parameter file check has not been compiled."
2209	fi
2210	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2211	then
2212	skip_check=true
2213	reason="parameter file check has not been compiled."
2214	fi
2215
2216	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2217	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2218	then
2219	skip_check=true
2220	reason="serial run."
2221	fi
2222
2223	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2224	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2225	if [[ $check_namelist_files == false ]]
2226	then
2227	skip_check=true
2228	reason="-z option set."
2229	fi
2230
2231	if [[ $fromhost != $localhost ]]
2232	then
2233	skip_check=true
2234	reason="submitting host is local host."
2235	fi
2236
2237	if [[ $run_coupled_model == true ]]
2238	then
2239	skip_check=true
2240	reason="coupled run."
2241	fi
2242
2243	if [[ $restart_run == true ]]
2244	then
2245	skip_check=true
2246	reason="restart run."
2247
2248	fi
2249
2250	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2251	((last_char = `echo $filename_input \| wc -c` - 1))
2252	last_char=`echo $filename_input \|cut -c$last_char`
2253	if [[ "$last_char" == "f" ]]
2254	then
2255	skip_check=true
2256	reason="restart run."
2257	fi
2258
2259	if [[ $skip_check == false ]]
2260	then
2261
2262	tmp_check=${working_directory}/tmp_check
2263
2264	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2265	# NOT NECESSARILY REQUIRED
2266	line=""
2267	found=false
2268	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2269	while read line1
2270	do
2271	line="$line1"
2272	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2273	then
2274	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2275	found=true
2276	fi
2277	done < $tmp_check
2278
2279	if [[ $found = false ]]
2280	then
2281	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2282	fi
2283
2284	rm -rf ${working_directory}/tmp_check
2285
2286	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2287	for item in $input_list
2288	do
2289	if [[ "$item" == "restart" ]]
2290	then
2291	check_restart=1
2292	else
2293	check_restart=0
2294	fi
2295	done
2296
2297	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2298	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2299	then
2300	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2301	locat=check_namelist; exit
2302	fi
2303
2304	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2305	if [[ $check_restart == 1 ]]
2306	then
2307
2308
2309
2310	filenamef="${filename_input}f"
2311	if [[ ! -f $filenamef ]]
2312	then
2313	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2314	check_restart=0
2315	answer=dummy
2316	printf "\n\n"
2317
2318	if [[ $silent == false ]]
2319	then
2320	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2321	do
2322	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2323	read answer
2324	done
2325	if [[ $answer = a \|\| $answer = A ]]
2326	then
2327	printf "\n +++ Aborting...."
2328	locat=normal; exit
2329	fi
2330	fi
2331	else
2332	check_restart=1
2333	fi
2334	fi
2335
2336	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2337	mkdir $check_sources
2338	cd $check_sources
2339
2340
2341	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2342	if [[ -d $add_source_path ]]
2343	then
2344	printf "\n\n *** copying files from $check_depository"
2345	cp $check_depository/check_namelist_files.tar ./
2346
2347	printf "\n\n *** untar of makefile and source files in $check_sources"
2348	tar -xf check_namelist_files.tar > /dev/null 2>&1
2349
2350	printf "\n\n *** adding user code."
2351	cp $add_source_path/* ./
2352	touch check_namelist_files.f90
2353
2354	# GET COMPILER OPTIONS AND PERFORM MAKE
2355	printf "\n\n *** compiling code if necessary...\n"
2356
2357	# workaround for batch jobs on local machine (lcxe6)
2358	if [[ $do_batch == true && $do_remote == false ]]
2359	then
2360	eval $init_cmds
2361	fi
2362
2363	# GET CHECK OPTIONS
2364	line=""
2365	found=false
2366
2367	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2368
2369	while read line1
2370	do
2371
2372	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2373	then
2374	line="$line1"
2375	fi
2376
2377	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2378	then
2379	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2380	line="$line "
2381	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2382	found=true
2383	fi
2384
2385	done < $tmp_check
2386	copts_check="$copts_check -D__check -D__parallel"
2387
2388	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2389
2390	# GET MAKE OUTPUT
2391	if [[ $? != 0 ]]
2392	then
2393	printf "\n +++ error during make."
2394	answer=dummy
2395	printf "\n\n"
2396	if [[ $silent == false ]]
2397	then
2398	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2399	do
2400	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2401	read answer
2402	done
2403	if [[ $answer = a \|\| $answer = A ]]
2404	then
2405	printf "\n +++ Aborting..."
2406	rm -rf $check_sources
2407	locat=normal; exit
2408	else
2409	skip_check=true
2410	fi
2411	else
2412	skip_check=true
2413	fi
2414	fi
2415	else
2416	cp $PALM_BIN/check_namelist_files.x ./
2417	fi
2418
2419	cp $filename_input ./PARIN
2420	if [[ $check_restart == 1 ]]
2421	then
2422	cp $filenamef ./PARINF
2423	fi
2424
2425	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2426	then
2427	printf "\n *** adding topography data"
2428	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2429
2430	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2431	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2432	# WHICH REQUIRE SUFFICIENT MEMORY
2433	ulimit -s unlimited
2434	fi
2435
2436	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2437	cat > ENVPAR << %%END%%
2438	&envpar run_identifier = '$fname', host = '$host',
2439	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2440	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2441	maximum_cpu_time_allowed = ${cpumax}.,
2442	revision = '$global_revision',
2443	local_dvrserver_running = $local_dvrserver_running /
2444
2445	%%END%%
2446
2447	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2448	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2449	printf "\n +++ WARNING: check_namelist_files.x not found."
2450	answer=dummy
2451	printf "\n\n"
2452
2453	if [[ $silent == false ]]
2454	then
2455	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2456	do
2457	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2458	read answer
2459	done
2460	if [[ $answer = a \|\| $answer = A ]]
2461	then
2462	printf "\n +++ Aborting..."
2463	rm -rf $check_sources
2464	locat=normal; exit
2465	else
2466	printf "\n *** skipping parameter file check."
2467
2468	fi
2469	fi
2470
2471	elif [[ $skip_check == false ]]
2472	then
2473	# STARTING THE PARAMETER FILE CHECK
2474	printf "\n\n *** starting parameter file check..."
2475
2476	# CHECKING THE P3D FILE
2477	printf "\n\n (1) checking $filename_input"
2478	echo "$numprocs 0 0" > VARIN
2479	errors=`./check_namelist_files.x < VARIN 2>&1`
2480
2481	check_error=false
2482	if [[ "$errors" == "" ]]
2483	then
2484	printf " --> o.k."
2485	else
2486	printf " --> failed."
2487	check_error=true
2488	printf "\n\n $errors"
2489	fi
2490
2491	# CHECKING THE PD3F FILE IF NECESSARY
2492	if [[ $check_restart == 1 && $check_error == false ]]
2493	then
2494	printf "\n\n (2) checking $filenamef"
2495
2496	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2497	found=false
2498	cat PARINF\|while read line
2499	do
2500	line=$(echo $line\|sed 's/ //g')
2501	if [[ $line == "&inipar" ]]
2502	then
2503	start_search=true
2504	fi
2505
2506	if [[ $start_search == true ]]
2507	then
2508	if [[ $line == "initializing_actions='read_restart_data'" ]]
2509	then
2510	found=true
2511	break
2512	fi
2513	fi
2514
2515	if [[ $line == "/" ]]
2516	then
2517	start_search=false
2518	fi
2519
2520	done
2521
2522	if [[ $found = false ]]
2523	then
2524	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2525	printf "\n in &inipar list in $fname$p3df_suffix."
2526	rm -rf $check_sources
2527	locat=check_namelist; exit
2528	fi
2529
2530	# READ max_user_pr FROM FILES
2531	if [[ -f parin_for_check ]]
2532	then
2533	read max_pr_user < parin_for_check
2534	else
2535	max_user_pr=0
2536	fi
2537
2538	echo "$numprocs 1 $max_pr_user" > VARIN
2539	errors=`./check_namelist_files.x < VARIN 2>&1`
2540
2541	if [[ "$errors" == "" ]]
2542	then
2543	printf " --> o.k."
2544	else
2545	printf " --> failed."
2546	check_error=true
2547	printf "\n\n $errors"
2548	fi
2549	fi
2550
2551	# REPORT ERRORS AND CONTINUE/EXIT
2552	if [[ $check_error == true ]]
2553	then
2554	printf "\n +++ errors found in the parameter file!\n"
2555	answer=dummy
2556	printf "\n\n"
2557
2558	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2559	do
2560	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2561	read answer
2562	done
2563
2564	if [[ $answer = a \|\| $answer = A ]]
2565	then
2566	printf "\n +++ Aborting..."
2567	rm -rf $check_sources
2568	locat=normal; exit
2569	fi
2570	else
2571	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2572	fi
2573	rm -rf $check_sources
2574	fi
2575	else
2576	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2577	fi
2578
2579	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2580	rm -rf $check_sources
2581	cd $working_directory
2582
2583
2584	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2585	# CHENDE AKTIONEN DURCHGEFUEHRT
2586	if [[ $do_batch = false ]]
2587	then
2588
2589
2590	# TEMPORAEREN KATALOG ERZEUGEN
2591	mkdir -p $TEMPDIR
2592	chmod go+rx $TEMPDIR
2593	tmpcreate=true
2594
2595	# set striping on lustre file system
2596	# if [[ $localhost = lcsgih ]]
2597	# then
2598	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2599	# lfs getstripe $TEMPDIR
2600	# fi
2601
2602
2603	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2604	# TEMPORAERES VERZEICHNIS KOPIEREN
2605	if [[ $do_compile = true ]]
2606	then
2607
2608	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2609	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2610	if [[ $localhost = nech ]]
2611	then
2612	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2613	if mkdir -p $TEMPDIR_COMPILE
2614	then
2615	printf "\n *** \"$TEMPDIR_COMPILE\" "
2616	printf "\n is generated as temporary directory for cross compiling\n"
2617	else
2618	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2619	printf "\n needed for cross compilation failed"
2620	locat=compile
2621	exit
2622	fi
2623	else
2624	TEMPDIR_COMPILE=$TEMPDIR
2625	fi
2626
2627
2628	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2629	line=""
2630	grep "%depository_path" $config_file > tmp_mrun
2631	while read line
2632	do
2633	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2634	then
2635	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2636	then
2637	global_depository_path=`echo $line \| cut -d" " -s -f2`
2638	fi
2639	fi
2640	done < tmp_mrun
2641
2642	line=""
2643	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2644	while read line
2645	do
2646	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2647	then
2648	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2649	then
2650	local_depository_path=`echo $line \| cut -d" " -s -f2`
2651	fi
2652	fi
2653	done < tmp_mrun
2654
2655	if [[ "$local_depository_path" = "" ]]
2656	then
2657	if [[ "$global_depository_path" != "" ]]
2658	then
2659	local_depository_path=$global_depository_path
2660	else
2661	printf "\n\n +++ no depository path found in configuration file"
2662	printf "\n for local host \"$localhost\" "
2663	printf "\n please set \"\%depository_path\" in configuration file\n"
2664	locat=config_file; exit
2665	fi
2666	fi
2667	eval local_depository_path=$local_depository_path
2668	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2669	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2670
2671
2672	basename=`print $mainprog \| cut -f1 -d"."`
2673	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2674	if [[ ! -f $make_depository ]]
2675	then
2676	printf "\n"
2677	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2678	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2679	else
2680	cp $make_depository $TEMPDIR_COMPILE
2681	cd $TEMPDIR_COMPILE
2682	tar -xf $make_depository > /dev/null 2>&1
2683	cd - > /dev/null
2684	fi
2685
2686	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2687
2688	else
2689
2690	cp $executable ${TEMPDIR}/a.out
2691
2692	fi
2693
2694
2695	# WECHSEL IN TEMPORAEREN KATALOG
2696	cd $TEMPDIR
2697	printf "\n *** changed to temporary directory: $TEMPDIR"
2698
2699
2700	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2701	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2702	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2703	# ERMITTELN
2704	(( i = 0 ))
2705	while (( i < iout ))
2706	do
2707	(( i = i + 1 ))
2708	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2709	then
2710	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2711	else
2712	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2713	fi
2714	done
2715
2716
2717	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2718	if [[ $do_compile = true ]]
2719	then
2720
2721
2722	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2723	printf "\n\n\n *** compilation starts \n$striche\n"
2724	printf " *** compilation with make using following options:\n"
2725	printf " make depository: $make_depository"
2726	if [[ "$mopts" != "" ]]
2727	then
2728	printf " make options: $mopts\n"
2729	fi
2730	printf " compilername: $compiler_name\n"
2731	printf " compiler options: $fopts\n"
2732	printf " preprocessor directives: $cpp_options \n"
2733	printf " linker options: $lopts \n"
2734	if [[ "$modules" != "" ]]
2735	then
2736	printf " modules to be load: $modules \n"
2737	fi
2738	printf " source code files: $source_list \n"
2739
2740	if [[ $localhost = nech ]]
2741	then
2742	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2743	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2744	cp $TEMPDIR_COMPILE/a.out .
2745	[[ $? != 0 ]] && compile_error=true
2746	rm -rf $TEMPDIR_COMPILE
2747	elif [[ $localhost = ibmh ]]
2748	then
2749	printf " compiler is called via ssh on \"plogin1\" \n"
2750	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2751	[[ ! -f a.out ]] && compile_error=true
2752	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2753	elif [[ $localhost = lcsgib ]]
2754	then
2755	printf " compiler is called via ssh on \"bicegate0\" \n"
2756	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2757	[[ ! -f a.out ]] && compile_error=true
2758	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2759	elif [[ $localhost = lcsgih ]]
2760	then
2761	printf " compiler is called via ssh on \"hicegate0\" \n"
2762	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2763	[[ ! -f a.out ]] && compile_error=true
2764	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2765	elif [[ $localhost = lcflow ]]
2766	then
2767	printf " compiler is called via ssh on \"flow\" \n"
2768	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2769	[[ ! -f a.out ]] && compile_error=true
2770	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2771	else
2772	[[ "$init_cmds" != "" ]] && eval $init_cmds
2773	[[ "$module_calls" != "" ]] && eval $module_calls
2774	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2775
2776	fi
2777
2778	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2779	then
2780	printf "\n +++ error occured while compiling or linking"
2781	locat=compile
2782
2783	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2784	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2785	# then
2786	exit
2787	# else
2788	# locat=normal
2789	# fi
2790	else
2791	printf "$striche\n *** compilation finished \n"
2792	fi
2793	fi
2794
2795
2796	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2797	if [[ $local_compile = true ]]
2798	then
2799	cd $HOME
2800	rm -rf $TEMPDIR
2801	locat=local_compile; exit
2802	fi
2803
2804
2805	# BEREITSTELLEN DER INPUT-DATEIEN
2806	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2807	(( i = 0 ))
2808	while (( i < iin ))
2809	do
2810	(( i = i + 1 ))
2811	if (( i == 1 ))
2812	then
2813	printf "\n\n *** providing INPUT-files:\n$striche"
2814	fi
2815
2816
2817	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2818	if [[ "${transin[$i]}" = unavailable ]]
2819	then
2820	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2821	then
2822	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2823	printf "\n is not available!"
2824	else
2825	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2826	printf "\n is not available!"
2827	fi
2828	continue
2829	fi
2830
2831	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2832	files_for_pes=false; datentyp=file
2833	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2834	then
2835	files_for_pes=true; datentyp=directory
2836	actionin[$i]=""
2837	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2838	then
2839	actionin[$i]=""
2840	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2841	then
2842	files_for_pes=true; datentyp=directory
2843	actionin[$i]="ar"
2844	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2845	then
2846	actionin[$i]="ar"
2847	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2848	then
2849	files_for_pes=true; datentyp=directory
2850	actionin[$i]="fl"
2851	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2852	then
2853	actionin[$i]="fl"
2854	fi
2855
2856	if [[ $files_for_pes = true ]]
2857	then
2858	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2859	else
2860	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2861	fi
2862
2863	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2864	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2865	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2866	# SERVER ZU HOLEN
2867	if [[ "${actionin[$i]}" = fl ]]
2868	then
2869	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2870	if [[ $files_for_pes = false ]]
2871	then
2872	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2873	then
2874	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2875	got_tmp[$i]=true
2876	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2877	then
2878	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2879	printf "\n *** trying to use backup copy in \"$WORK\" "
2880	cp $WORK/${frelin[$i]} ${localin[$i]}
2881	else
2882	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2883	printf "\n or \"$tmp_data_catalog\" does not exist!"
2884	printf "\n *** trying to get copy from archive"
2885	actionin[$i]=ar
2886	fi
2887	else
2888	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2889	then
2890	mkdir ${localin[$i]}
2891	cd $tmp_data_catalog/${frelin[$i]}
2892	for file in $(ls *)
2893	do
2894	ln $file $TEMPDIR/${localin[$i]}
2895	done
2896	cd $TEMPDIR
2897	got_tmp[$i]=true
2898	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2899	then
2900	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2901	printf "\n *** trying to use backup copy in \"$WORK\" "
2902	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2903	else
2904	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2905	printf "\n or \"$tmp_data_catalog\" does not exist!"
2906	printf "\n *** trying to get copy from archive"
2907	actionin[$i]=ar
2908	fi
2909	fi
2910	fi
2911
2912
2913	# DATEI LIEGT AUF ARCHIV-SERVER
2914	if [[ "${actionin[$i]}" = ar ]]
2915	then
2916
2917	if [[ $files_for_pes = false ]]
2918	then
2919	printf "\n file will be restored from archive-system ($archive_system)!"
2920	else
2921	printf "\n directory will be restored from archive-system ($archive_system)!"
2922	fi
2923
2924	file_restored=false
2925
2926	if [[ $archive_system = asterix ]]
2927	then
2928	do_stagein=true
2929	(( stagein_anz = 0 ))
2930	while [[ $do_stagein = true ]]
2931	do
2932	if [[ $files_for_pes = false ]]
2933	then
2934	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2935	else
2936	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2937	fi
2938	cat STAGEIN_OUTPUT
2939	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2940	then
2941	file_restored=true
2942	do_stagein=false
2943	else
2944	(( stagein_anz = stagein_anz + 1 ))
2945	if (( stagein_anz == 10 ))
2946	then
2947	printf "\n +++ stagein stoped after 10 tries"
2948	locat=stage
2949	exit
2950	fi
2951	printf "\n +++ restoring from archive failed, trying again:"
2952	sleep 900
2953	fi
2954	done
2955	elif [[ $archive_system = DMF ]]
2956	then
2957	if [[ $files_for_pes = false ]]
2958	then
2959	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2960	locat=DMF
2961	exit
2962	else
2963	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2964	cp -r $ARCHIVE/${frelin[$i]} $PWD
2965	file_restored=true
2966	fi
2967	elif [[ $archive_system = tivoli ]]
2968	then
2969	if [[ $files_for_pes = false ]]
2970	then
2971	if [[ $localhost = lcsgih ]]
2972	then
2973	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2974	else
2975	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2976	fi
2977	else
2978	(( inode = 0 ))
2979	while (( inode < nodes ))
2980	do
2981	if [[ $localhost = lcsgih ]]
2982	then
2983	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2984	else
2985	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2986	fi
2987	(( inode = inode + 1 ))
2988	done
2989	fi
2990	file_restored=true
2991	elif [[ $archive_system = ut ]]
2992	then
2993	if [[ $files_for_pes = false ]]
2994	then
2995	cp $UT/${frelin[$i]} .
2996	else
2997	(( inode = 0 ))
2998	while (( inode < nodes ))
2999	do
3000	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3001	(( inode = inode + 1 ))
3002	done
3003	fi
3004	file_restored=true
3005	else
3006	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3007	locat=rearchive
3008	exit
3009	fi
3010
3011	if [[ $file_restored = true ]]
3012	then
3013
3014	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3015	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3016	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3017	if [[ $files_for_pes = false ]]
3018	then
3019	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3020	else
3021	mkdir $tmp_data_catalog/${frelin[$i]}
3022	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3023	fi
3024	got_tmp[$i]=true
3025
3026	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3027	mv ${frelin[$i]} ${localin[$i]}
3028
3029	fi
3030	fi
3031
3032
3033	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3034	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3035	then
3036
3037	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3038	then
3039
3040	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3041	printf "\n file will be provided for $numprocs processors"
3042	mkdir ${localin[$i]}
3043	ival=$numprocs
3044	(( ii = 0 ))
3045	while (( ii <= ival-1 ))
3046	do
3047	if (( ii < 10 ))
3048	then
3049	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3050	elif (( ii < 100 ))
3051	then
3052	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3053	elif (( ii < 1000 ))
3054	then
3055	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3056	else
3057	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3058	fi
3059	(( ii = ii + 1 ))
3060	done
3061
3062	else
3063
3064	if [[ $files_for_pes = true ]]
3065	then
3066
3067	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3068	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3069	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3070	# PER MOVE UMBENANNT WERDEN
3071	printf "\n providing $numprocs files for the respective processors"
3072	mkdir ${localin[$i]}
3073	if [[ $link_local_input = true ]]
3074	then
3075	printf " using ln -f\n"
3076	cd ${absnamein[$i]}
3077	for file in $(ls *)
3078	do
3079	ln -f $file ${localin[$i]}
3080	done
3081	cd $TEMPDIR
3082	fi
3083	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3084	if [[ ! -f "${localin[$i]}/_0000" ]]
3085	then
3086	if [[ $link_local_input = true ]]
3087	then
3088	printf " ln failed for .../_0000, using cp...\n"
3089	fi
3090	cp -r ${absnamein[$i]}/* ${localin[$i]}
3091	fi
3092
3093	else
3094	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3095	if [[ $link_local_input = true ]]
3096	then
3097	printf " using ln -f\n"
3098	ln -f ${absnamein[$i]} ${localin[$i]}
3099	fi
3100	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3101	if [[ ! -f "${localin[$i]}" ]]
3102	then
3103	if [[ $link_local_input = true ]]
3104	then
3105	printf " ln failed, using cp...\n"
3106	fi
3107	cp ${absnamein[$i]} ${localin[$i]}
3108	fi
3109	fi
3110	fi
3111	fi
3112
3113	done
3114	if (( i != 0 ))
3115	then
3116	printf "\n$striche\n *** all INPUT-files provided \n"
3117	fi
3118
3119
3120	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3121	(( i = 0 ))
3122	while (( i < iic ))
3123	do
3124	(( i = i + 1 ))
3125	if (( i == 1 ))
3126	then
3127	printf "\n\n *** execution of INPUT-commands:\n$striche"
3128	fi
3129	printf "\n >>> ${in_command[$i]}"
3130	eval ${in_command[$i]}
3131	if (( i == iic ))
3132	then
3133	printf "\n$striche\n"
3134	fi
3135	done
3136
3137
3138	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3139	cpurest=${cpumax}.
3140
3141
3142	# START DVR STREAMING SERVER
3143	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3144	then
3145	if [[ "$dvr_server" != "" ]]
3146	then
3147
3148	printf "\n\n *** preparing the dvr streaming server configuration file"
3149
3150	# Check, if a dvr server is already running
3151	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3152	if [[ "$running_dvrserver_id" != "" ]]
3153	then
3154
3155	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3156	printf "\n This server is used instead starting a new one!"
3157	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3158
3159	else
3160
3161	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3162	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3163	then
3164	cp ${PALM_BIN}/.dvrserver.config .
3165
3166	# Entering the BASEDIR, UID and GID into this file
3167	user_id=`id -u`
3168	group_id=`id -g`
3169	# & is needed as seperator, because TEMPDIR contains /
3170	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3171	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3172	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3173	mv .dvrserver.3 .dvrserver.config
3174	rm .dvrserver.1 .dvrserver.2
3175
3176	# Start dvr server in background, get his id and print on terminal
3177	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3178	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3179	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3180	local_dvrserver_running=.TRUE.
3181	else
3182	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3183	printf "\n \"$PALM_BIN\" "
3184	locat=dvr
3185	exit
3186	fi
3187
3188	fi
3189
3190	else
3191	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3192	fi
3193	fi
3194
3195
3196	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3197	# LESEN VON PALM)
3198	cat > ENVPAR << %%END%%
3199	&envpar run_identifier = '$fname', host = '$localhost',
3200	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3201	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3202	maximum_cpu_time_allowed = ${cpumax}.,
3203	revision = '$global_revision',
3204	local_dvrserver_running = $local_dvrserver_running /
3205
3206	%%END%%
3207
3208
3209	# PROGRAMMSTART
3210	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3211	PATH=$PATH:$TEMPDIR
3212
3213	# MPI debug option (argument checking, slows down execution due to increased latency)
3214	if [[ "$mpi_debug" = true ]]
3215	then
3216	export MPI_CHECK_ARGS=1
3217	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3218	fi
3219
3220	if [[ "$totalview" = true ]]
3221	then
3222	printf "\n *** totalview debugger will be used"
3223	tv_opt="-tv"
3224	else
3225	tv_opt=""
3226	fi
3227
3228	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3229	then
3230	if [[ "$ENVIRONMENT" = BATCH ]]
3231	then
3232	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3233	then
3234	printf "\n +++ debug is allowed in interactive mode only"
3235	locat=debug
3236	exit
3237	fi
3238	fi
3239	if [[ $localhost = decalpha ]]
3240	then
3241	dxladebug a.out
3242	elif [[ $localhost = ibmh ]]
3243	then
3244
3245	# SETUP THE IBM MPI ENVIRONMENT
3246	export MP_SHARED_MEMORY=yes
3247	export AIXTHREADS_SCOPE=S
3248	export OMP_NUM_THREADS=$threads_per_task
3249	export AUTHSTATE=files
3250	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3251
3252	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3253	export MP_ADAPTER_USE=shared
3254	export MP_CPU_USE=multiple
3255	export MP_TIMEOUT=1200
3256
3257	unset MP_TASK_AFFINITY
3258
3259	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3260	#(( ii = 1 ))
3261	#while (( ii <= $numprocs ))
3262	#do
3263	# echo $localhost_realname >> hostfile
3264	# (( ii = ii + 1 ))
3265	#done
3266	#export MP_HOSTFILE=hostfile
3267
3268	if [[ "$LOADLBATCH" = yes ]]
3269	then
3270	totalview poe a.out $ROPTS
3271	else
3272	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3273	export TVDSVRLAUNCHCMD=ssh
3274	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3275	fi
3276	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3277	then
3278	# CURRENTLY NO DEBUGGER ON LCSGI
3279	if [[ $run_coupled_model = true ]]
3280	then
3281	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3282	locat=debug
3283	exit
3284	else
3285	echo "no_coupling" > runfile_atmos
3286	fi
3287	(( ii = $numprocs / $threads_per_task ))
3288	export OMP_NUM_THREADS=$threads_per_task
3289	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3290	if [[ $threads_per_task != 1 ]]
3291	then
3292	printf "\n threads per task: $threads_per_task"
3293	fi
3294	printf "\n\n"
3295	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3296	then
3297	# export MPI_LAUNCH_TIMEOUT=360
3298	if [[ "$totalview" = true ]]
3299	then
3300	printf "\n running totalview debugger"
3301	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3302	else
3303	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3304	fi
3305	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3306	then
3307	# ulimit -s 300000 # A too large stack size causes problems
3308	# export MV2_NUM_PORTS=2
3309	# export MV2_CPU_MAPPING=0:1:2:3
3310	if [[ "$totalview" = true ]]
3311	then
3312	printf "\n running totalview debugger"
3313	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3314	else
3315	mpiexec ./a.out $ROPTS < runfile_atmos
3316	fi
3317	fi
3318	else
3319	printf "\n +++ no debug available on \"$localhost\" "
3320	printf "\n or not implemented in mrun so far"
3321	locat=debug
3322	exit
3323	fi
3324
3325	# end debug mode
3326	else
3327
3328	# normal execution
3329	if [[ -n $numprocs ]]
3330	then
3331	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3332	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3333	then
3334	# SETUP THE IBM MPI ENVIRONMENT
3335	if [[ $host != ibmh && $host != ibmkisti ]]
3336	then
3337	export MP_SHARED_MEMORY=yes
3338	export AIXTHREAD_SCOPE=S
3339	export OMP_NUM_THREADS=$threads_per_task
3340	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3341	export AUTHSTATE=files
3342	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3343	# export MP_PRINTENV=yes
3344
3345	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3346	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3347	export MP_WAIT_MODE=poll
3348	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3349	fi
3350
3351	if [[ $host = ibmkisti ]]
3352	then
3353	export LANG=en_US
3354	export MP_SHARED_MEMORY=yes
3355	if [[ $threads_per_task = 1 ]]
3356	then
3357	export MP_SINGLE_THREAD=yes
3358	export MEMORY_AFFINITY=MCM
3359	else
3360	export OMP_NUM_THREADS=$threads_per_task
3361	fi
3362	fi
3363
3364	if [[ "$LOADLBATCH" = yes ]]
3365	then
3366	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3367	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3368	then
3369	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3370	else
3371	if [[ $run_coupled_model = false ]]
3372	then
3373	if [[ "$ocean_file_appendix" = true ]]
3374	then
3375	echo "precursor_ocean" > runfile_atmos
3376	else
3377	echo "precursor_atmos" > runfile_atmos
3378	fi
3379	else
3380	(( iia = $numprocs_atmos / $threads_per_task ))
3381	(( iio = $numprocs_ocean / $threads_per_task ))
3382	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3383	printf "\n using $coupled_mode coupling"
3384	printf "\n\n"
3385	echo "coupled_run $iia $iio" > runfile_atmos
3386	fi
3387	poe ./a.out $ROPTS < runfile_atmos
3388	fi
3389	else
3390	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3391	then
3392	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3393	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3394	then
3395	if [[ -f $hostfile ]]
3396	then
3397	cp $hostfile hostfile
3398	else
3399	(( ii = 1 ))
3400	while (( ii <= $numprocs ))
3401	do
3402	echo $localhost_realname >> hostfile
3403	(( ii = ii + 1 ))
3404	done
3405	fi
3406	export MP_HOSTFILE=hostfile
3407	if [[ $run_coupled_model = false ]]
3408	then
3409	if [[ "$ocean_file_appendix" = true ]]
3410	then
3411	echo "precursor_ocean" > runfile_atmos
3412	else
3413	echo "precursor_atmos" > runfile_atmos
3414	fi
3415	else
3416	(( iia = $numprocs_atmos / $threads_per_task ))
3417	(( iio = $numprocs_ocean / $threads_per_task ))
3418	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3419	printf "\n using $coupled_mode coupling"
3420	printf "\n\n"
3421	echo "coupled_run $iia $iio" > runfile_atmos
3422	fi
3423	if [[ $localhost = ibmy ]]
3424	then
3425	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3426	else
3427	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3428	fi
3429
3430	else
3431	if [[ "$host_file" = "" ]]
3432	then
3433	printf "\n +++ no hostfile given in configuration file"
3434	locat=config_file
3435	exit
3436	else
3437	eval host_file=$host_file
3438	fi
3439	export MP_HOSTFILE=$host_file
3440	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3441	fi
3442	fi
3443	elif [[ $host = nech \|\| $host = necriam ]]
3444	then
3445	(( ii = nodes ))
3446	if [[ $ii = 1 ]]
3447	then
3448	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3449	export MPIPROGINF=YES
3450	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3451	echo "*** execution on single node with mpirun"
3452	mpirun -np $numprocs ./a.out $ROPTS
3453	else
3454	(( i = 0 ))
3455	while (( i < ii ))
3456	do
3457	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3458	(( i = i + 1 ))
3459	done
3460
3461	echo "#!/bin/sh" > mpi_exec_shell
3462	echo " " >> mpi_exec_shell
3463	echo "set -u" >> mpi_exec_shell
3464	echo "F_ERRCNT=0" >> mpi_exec_shell
3465	echo "MPIPROGINV=YES" >> mpi_exec_shell
3466	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3467	echo "cpurest=$cpurest" >> mpi_exec_shell
3468	echo "fname=$fname" >> mpi_exec_shell
3469	echo "localhost=$localhost" >> mpi_exec_shell
3470	echo "return_addres=$return_addres" >> mpi_exec_shell
3471	echo "return_username=$return_username" >> mpi_exec_shell
3472	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3473	echo "write_binary=$write_binary" >> mpi_exec_shell
3474	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3475	echo " " >> mpi_exec_shell
3476	echo "export F_ERRCNT" >> mpi_exec_shell
3477	echo "export MPIPROGINV" >> mpi_exec_shell
3478	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3479	echo "export cpurest" >> mpi_exec_shell
3480	echo "export fname" >> mpi_exec_shell
3481	echo "export localhost" >> mpi_exec_shell
3482	echo "export return_addres" >> mpi_exec_shell
3483	echo "export return_username" >> mpi_exec_shell
3484	echo "export tasks_per_node" >> mpi_exec_shell
3485	echo "export write_binary" >> mpi_exec_shell
3486	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3487	echo " " >> mpi_exec_shell
3488	echo "exec ./a.out" >> mpi_exec_shell
3489
3490	chmod u+x mpi_exec_shell
3491	export MPIPROGINF=YES
3492	mpirun -f multinode_config &
3493	wait
3494
3495	fi
3496	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3497	then
3498
3499	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3500	# DOES NOT EXIST
3501	if [[ $host != lcsgih && $host != lcsgib ]]
3502	then
3503	if [[ -f $hostfile ]]
3504	then
3505	cp $hostfile hostfile
3506	(( ii = $numprocs / $threads_per_task ))
3507	else
3508	(( ii = 1 ))
3509	while (( ii <= $numprocs / $threads_per_task ))
3510	do
3511	echo $localhost_realname >> hostfile
3512	(( ii = ii + 1 ))
3513	done
3514	fi
3515	eval zeile=\"`head -n $ii hostfile`\"
3516	printf "\n *** running on: $zeile"
3517	fi
3518
3519	(( ii = $numprocs / $threads_per_task ))
3520	export OMP_NUM_THREADS=$threads_per_task
3521	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3522	if [[ $threads_per_task != 1 ]]
3523	then
3524	# increase stack size to unlimited, because large runs
3525	# may abort otherwise
3526	ulimit -Ss unlimited
3527	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3528	fi
3529	if [[ $run_coupled_model = false ]]
3530	then
3531	if [[ "$ocean_file_appendix" = true ]]
3532	then
3533	echo "precursor_ocean" > runfile_atmos
3534	else
3535	echo "precursor_atmos" > runfile_atmos
3536	fi
3537	printf "\n\n"
3538	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3539	then
3540	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3541	then
3542	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3543	# export MPI_DSM_DISTRIBUTE=1
3544	# MPI_DSM_CPULIST: pin MPI processes to cores
3545	if [[ $use_openmp = false ]]
3546	then
3547	if [[ "$sgi_feature" = ice2 ]]
3548	then
3549	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3550	else
3551	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3552	fi
3553	else
3554	unset MPI_DSM_CPULIST
3555	fi
3556	# MPI_IB_RAILS: use both IB rails on ICE2
3557	export MPI_BUFS_PER_HOST=512
3558	export MPI_IB_RAILS=2
3559	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3560	export MPI_CONNECTIONS_THRESHOLD=8192
3561	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3562	export MPI_TYPE_DEPTH=20
3563	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3564	export MPI_GROUP_MAX=64
3565	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3566	if [[ $use_openmp = true ]]
3567	then
3568	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3569	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3570	else
3571	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3572	fi
3573
3574	# next is test for openmp usage
3575	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3576	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3577	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3578	then
3579	export MV2_NUM_PORTS=2
3580	# The default setting of MV2_CPU_MAPPING gives best results
3581	# export MV2_ENABLE_AFFINITY=1
3582	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3583	# if [[ "$sgi_feature" = ice2 ]]
3584	# then
3585	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3586	# else
3587	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3588	# fi
3589	if [[ $use_openmp = true ]]
3590	then
3591	unset MV2_CPU_MAPPING
3592	export MV2_ENABLE_AFFINITY=0
3593	fi
3594	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3595	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3596	if [[ $use_openmp = true ]]
3597	then
3598	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3599	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3600	else
3601	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3602	fi
3603	elif [[ "$mpilib" = impi ]]
3604	then
3605	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3606	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3607	fi
3608	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3609	then
3610	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3611	elif [[ $host = lcflow ]]
3612	then
3613	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3614	elif [[ $host = lcsb ]]
3615	then
3616	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3617	elif [[ $host = lckiaps ]]
3618	then
3619	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3620	elif [[ $host = lckyu* ]]
3621	then
3622	mpiexec -n $ii a.out < runfile_atmos $ROPTS
3623	else
3624	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3625	fi
3626	else
3627
3628	# currently there is no full MPI-2 support on ICE and XT4
3629	(( iia = $numprocs_atmos / $threads_per_task ))
3630	(( iio = $numprocs_ocean / $threads_per_task ))
3631	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3632	printf "\n using $coupled_mode coupling"
3633	printf "\n\n"
3634
3635	if [[ $coupled_mode = "mpi2" ]]
3636	then
3637	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3638	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3639	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3640	then
3641
3642	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3643	then
3644	# export MPI_LAUNCH_TIMEOUT=360
3645	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3646	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3647	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3648	then
3649	# ulimit -s 300000 # A too large stack size causes problems
3650	# export MV2_NUM_PORTS=2
3651	# export MV2_CPU_MAPPING=0:1:2:3
3652	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3653	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3654	fi
3655
3656	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3657	then
3658
3659	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3660	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3661
3662	else
3663	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3664	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3665	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3666	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3667	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3668	fi
3669	wait
3670
3671	else
3672
3673	echo "coupled_run $iia $iio" > runfile_atmos
3674	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3675	then
3676
3677	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3678	then
3679	# export MPI_LAUNCH_TIMEOUT=360
3680	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3681	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3682	then
3683	# ulimit -s 300000 # A too large stack size causes problems
3684	# export MV2_NUM_PORTS=2
3685	# export MV2_CPU_MAPPING=0:1:2:3
3686	mpiexec ./a.out $ROPTS < runfile_atmos
3687	fi
3688
3689	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3690	then
3691
3692	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3693
3694	elif [[ $host = lck \|\| $host = lckordi ]]
3695	then
3696	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3697	fi
3698	wait
3699	fi
3700
3701	fi
3702	elif [[ $host = decalpha ]]
3703	then
3704	dmpirun -np $numprocs a.out $ROPTS
3705	elif [[ $host = lckyoto ]]
3706	then
3707	set -xv
3708	export P4_RSHCOMMAND=plesh
3709	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3710	if [[ "$ENVIRONMENT" = BATCH ]]
3711	then
3712	if [[ "$cond2" = fujitsu ]]
3713	then
3714	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3715	elif [[ "cond2" = pgi ]]
3716	then
3717	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3718	else
3719	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3720	fi
3721	else
3722	if [[ "$cond2" = "" ]]
3723	then
3724	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3725	else
3726	mpirun -np $numprocs ./a.out $ROPTS
3727	fi
3728	fi
3729	set +xv
3730	elif [[ $host = lctit ]]
3731	then
3732	export OMP_NUM_THREADS=$threads_per_task
3733	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3734	if [[ "$threads_per_task" != 1 ]]
3735	then
3736	export MV2_ENABLE_AFFINITY=0
3737	fi
3738	echo "----- PBS_NODEFILE content:"
3739	cat $PBS_NODEFILE
3740	echo "-----"
3741	(( ii = $numprocs / $threads_per_task ))
3742	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3743	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3744	else
3745	mpprun -n $numprocs a.out $ROPTS
3746	fi
3747	[[ $? != 0 ]] && execution_error=true
3748
3749
3750	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3751	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3752	then
3753	apprentice
3754	fi
3755	else
3756	a.out $ROPTS
3757	fi
3758	fi
3759	if [[ $? != 0 \|\| $execution_error = true ]]
3760	then
3761
3762	# ABBRUCH BEI LAUFZEITFEHLER
3763	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3764	printf "\n +++ runtime error occured"
3765	locat=execution
3766	exit
3767	else
3768	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3769	printf "\n$striche\n *** execution finished \n"
3770
3771	# Stop the dvr streaming server and process the dvr output in order
3772	# to create dvrs- and html-files containing all streams
3773	if [[ "$dvrserver_id" != "" ]]
3774	then
3775	kill $dvrserver_id
3776	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3777
3778	# If there is a directory, data have been output by the
3779	# streaming server. Otherwise, user has chosen dvrp_output=local
3780	if [[ -d DATA_DVR ]]
3781	then
3782
3783	# Add the current dvr configuration file to the dvr output
3784	# directory
3785	cp .dvrserver.config DATA_DVR
3786
3787	# Process the dvr output (option -s for also generating
3788	# sequence mode data)
3789	process_dvr_output -d DATA_DVR -f $fname -s
3790
3791	else
3792
3793	# Process the local output
3794	process_dvr_output -l -d DATA_DVR -f $fname
3795
3796	fi
3797
3798	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3799	then
3800
3801	# Process dvr output generated in local mode (dvrp_output=local)
3802	process_dvr_output -l -d DATA_DVR -f $fname
3803
3804	fi
3805	fi
3806
3807
3808
3809	# Call of combine_plot_fields in order to merge single files written
3810	# by each PE into one file.
3811	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3812	then
3813	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3814	printf "\n 2d- and/or 3d-data may be incomplete!"
3815	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3816	elif [[ "$combine_plot_fields" == true ]]
3817	then
3818	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3819	combine_plot_fields${block}.x
3820	else
3821	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3822	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3823	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3824	fi
3825
3826
3827
3828	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3829	(( i = 0 ))
3830	while (( i < ioc ))
3831	do
3832	(( i = i + 1 ))
3833	if (( i == 1 ))
3834	then
3835	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3836	fi
3837	printf "\n >>> ${out_command[$i]}"
3838	eval ${out_command[$i]}
3839	if (( i == ioc ))
3840	then
3841	printf "\n$striche\n"
3842	fi
3843	done
3844
3845
3846	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3847	if [[ $do_trace = true ]]
3848	then
3849	printf "\n\n"
3850	ls -al
3851	fi
3852
3853
3854
3855	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3856	(( i = 0 ))
3857	while (( i < iout ))
3858	do
3859	(( i = i + 1 ))
3860	if (( i == 1 ))
3861	then
3862	printf "\n\n *** saving OUTPUT-files:\n$striche"
3863	fi
3864
3865	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3866	files_for_pes=false; filetyp=file
3867	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3868	then
3869	files_for_pes=true; filetyp=directory
3870	actionout[$i]=""
3871	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3872	then
3873	actionout[$i]=""
3874	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3875	then
3876	files_for_pes=true; filetyp=directory
3877	actionout[$i]="ar"
3878	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3879	then
3880	actionout[$i]="ar"
3881	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3882	then
3883	files_for_pes=true; filetyp=directory
3884	actionout[$i]="fl"
3885	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3886	then
3887	actionout[$i]="fl"
3888	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3889	then
3890	files_for_pes=true; filetyp=directory
3891	actionout[$i]="tr"
3892	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3893	then
3894	actionout[$i]="tr"
3895	fi
3896
3897	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3898	then
3899	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3900	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3901	then
3902	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3903	else
3904
3905
3906	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3907	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3908	# REMOTE-RECHNUNGEN
3909	if [[ "${actionout[$i]}" = tr ]]
3910	then
3911	if [[ $localhost != $fromhost ]]
3912	then
3913	if [[ $files_for_pes = false ]]
3914	then
3915	cps=""
3916	cst=""
3917	else
3918	cps=-c
3919	cst="/"
3920	fi
3921	if [[ $localhost = nech ]]
3922	then
3923
3924	# TRANSFER IN EIGENSTAENDIGEM JOB
3925	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3926	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3927	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3928	if [[ $files_for_pes = false ]]
3929	then
3930	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3931	else
3932	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3933	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3934	fi
3935
3936	echo "set -x" > transfer_${localout[$i]}
3937	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3938
3939	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3940	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3941	printf "\n or higher cycle\n"
3942	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3943
3944	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3945
3946	if [[ $localhost = nech ]]
3947	then
3948	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3949	else
3950	if [[ "$LOGNAME" = b323013 ]]
3951	then
3952	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3953	else
3954	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3955	fi
3956	fi
3957
3958	else
3959
3960	# TRANSFER INNERHALB DIESES JOBS
3961	transfer_failed=false
3962	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3963	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3964	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3965	[[ $? != 0 ]] && transfer_failed=true
3966
3967	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3968	# LOKALER MASCHINE ANLEGEN
3969	if [[ $transfer_failed = true ]]
3970	then
3971	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3972	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3973
3974	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3975	# ANLEGEN.
3976	eval local_catalog=${pathout[$i]}
3977	if [[ ! -d $local_catalog ]]
3978	then
3979	printf " *** local directory does not exist. Trying to create:\n"
3980	printf " $local_catalog \n"
3981	mkdir -p $local_catalog
3982	fi
3983	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3984	transfer_problems=true
3985	fi
3986	fi
3987	else
3988
3989	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3990	actionout[$i]=""
3991	fi
3992	fi
3993
3994
3995	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3996	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3997	# REMOTE-RECHNUNGEN
3998	if [[ "${actionout[$i]}" = tra ]]
3999	then
4000	if [[ $localhost != $fromhost ]]
4001	then
4002	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4003	then
4004
4005	# TRANSFER IN EIGENSTAENDIGEM JOB
4006	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4007	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4008	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4009	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4010
4011	echo "set -x" > transfer_${localout[$i]}
4012	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4013
4014	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4015	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4016	printf "\n or higher cycle\n"
4017	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4018
4019	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4020
4021	if [[ $localhost = nech ]]
4022	then
4023	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4024	else
4025	if [[ $LOGNAME = b323013 ]]
4026	then
4027	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4028	else
4029	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4030	fi
4031	fi
4032
4033	else
4034
4035	# TRANSFER INNERHALB DIESES JOBS
4036	transfer_failed=false
4037	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4038	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4039	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4040	[[ $? != 0 ]] && transfer_failed=true
4041
4042	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4043	# LOKALER MASCHINE ANLEGEN
4044	if [[ $transfer_failed = true ]]
4045	then
4046	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4047	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4048
4049	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4050	# ANLEGEN
4051	eval local_catalog=${pathout[$i]}
4052	if [[ ! -d $local_catalog ]]
4053	then
4054	printf " *** local directory does not exist. Trying to create:\n"
4055	printf " $local_catalog \n"
4056	mkdir -p $local_catalog
4057	fi
4058
4059	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4060	transfer_problems=true
4061	fi
4062	fi
4063	else
4064
4065	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4066	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4067	actionout[$i]=a
4068	fi
4069	fi
4070
4071
4072	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4073	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4074	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4075	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4076	if [[ "${actionout[$i]}" = fl ]]
4077	then
4078	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4079	chmod g+rx $tmp_data_catalog
4080	if [[ $files_for_pes = false ]]
4081	then
4082	printf "\n >>> OUTPUT: ${localout[$i]} to"
4083	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4084	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4085	else
4086	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4087	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4088	mkdir $tmp_data_catalog/${frelout[$i]}
4089	cd ${localout[$i]}
4090	for file in $(ls *)
4091	do
4092	ln -f $file $tmp_data_catalog/${frelout[$i]}
4093	done
4094	cd $TEMPDIR
4095	fi
4096
4097
4098	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4099	if [[ $store_on_archive_system = true ]]
4100	then
4101
4102	if [[ $archive_system = asterix ]]
4103	then
4104	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4105	if [[ $files_for_pes = false ]]
4106	then
4107	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4108	else
4109	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4110	fi
4111	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4112	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4113	echo "then" >> archive_${frelout[$i]}
4114	echo " do_stageout=false" >> archive_${frelout[$i]}
4115	echo "else" >> archive_${frelout[$i]}
4116	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4117	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4118	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4119	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4120	if [[ $files_for_pes = false ]]
4121	then
4122	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4123	else
4124	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4125	fi
4126	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4127	echo "fi" >> archive_${frelout[$i]}
4128	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4129	elif [[ $archive_system = DMF ]]
4130	then
4131	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4132	if [[ $files_for_pes = false ]]
4133	then
4134	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4135	locat=DMF
4136	exit
4137	else
4138	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4139	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4140	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4141	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4142	fi
4143	elif [[ $archive_system = tivoli ]]
4144	then
4145	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4146	if [[ $files_for_pes = false ]]
4147	then
4148	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4149	echo "set -x" >> archive_${frelout[$i]}
4150	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4151	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4152	else
4153
4154	echo "set -x" >> archive_${frelout[$i]}
4155	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4156	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4157	cd $tmp_data_catalog
4158	all_files=`ls -1 ${frelout[$i]}/*`
4159	cd - > /dev/null
4160	(( inode = 0 ))
4161	(( tp1 = tasks_per_node + 1 ))
4162	while (( inode < nodes ))
4163	do
4164	# echo "*** all_files = \"$all_files\" "
4165	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4166	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4167	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4168	# echo "*** files = \"$files\" "
4169	# echo "*** all_files = \"$all_files\" "
4170	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4171	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4172	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4173	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4174	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4175	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4176	(( inode = inode + 1 ))
4177	done
4178	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4179	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4180	fi
4181	elif [[ $archive_system = ut ]]
4182	then
4183	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4184	if [[ $files_for_pes = false ]]
4185	then
4186	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4187	echo "set -x" >> archive_${frelout[$i]}
4188	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4189	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4190	else
4191
4192	echo "set -x" >> archive_${frelout[$i]}
4193	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4194	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4195	cd $tmp_data_catalog
4196	all_files=`ls -1 ${frelout[$i]}/*`
4197	cd - > /dev/null
4198	(( inode = 0 ))
4199	(( tp1 = tasks_per_node + 1 ))
4200	while (( inode < nodes ))
4201	do
4202	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4203	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4204	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4205	(( inode = inode + 1 ))
4206	done
4207	fi
4208	elif [[ $archive_system = none ]]
4209	then
4210	printf " +++ archiving on $localhost not available!\n"
4211	fi
4212
4213	if [[ $archive_system != none ]]
4214	then
4215	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4216	then
4217	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4218	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4219	elif [[ $localhost = nech ]]
4220	then
4221	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4222	fi
4223	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4224	fi
4225	else
4226	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4227	fi
4228
4229
4230	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4231	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4232	if [[ $files_for_pes = false ]]
4233	then
4234	cat /dev/null > ${pathout[$i]}
4235	else
4236	mkdir -p ${pathout[$i]}
4237	fi
4238
4239	fi
4240
4241
4242	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4243	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4244	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4245	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4246	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4247	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4248	if [[ "${actionout[$i]}" = ar ]]
4249	then
4250	if [[ $files_for_pes = false ]]
4251	then
4252	printf "\n >>> OUTPUT: ${localout[$i]} to"
4253	printf "\n ${pathout[$i]}"
4254	printf "\n File will be copied to archive-system ($archive_system) !\n"
4255	else
4256	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4257	printf "\n ${pathout[$i]}"
4258	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4259	fi
4260	mv ${localout[$i]} ${frelout[$i]}
4261
4262	file_saved=false
4263
4264	if [[ $archive_system = asterix ]]
4265	then
4266	do_stageout=true
4267	(( stageout_anz = 0 ))
4268	while [[ $do_stageout = true ]]
4269	do
4270	if [[ $files_for_pes = false ]]
4271	then
4272	stageout ${frelout[$i]} > STAGE_OUTPUT
4273	else
4274	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4275	fi
4276	cat STAGE_OUTPUT
4277	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4278	then
4279	file_saved=true
4280	do_stageout=false
4281	else
4282	if [[ $files_for_pes = false ]]
4283	then
4284	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4285	else
4286	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4287	fi
4288	(( stageout_anz = stageout_anz + 1 ))
4289	if (( stageout_anz == 10 ))
4290	then
4291	printf "\n +++ stoped after 10 unsuccessful tries!"
4292	archive_save=false
4293	do_stageout=false
4294	else
4295	printf "\n *** new try to store on archive after 15 min:"
4296	sleep 900
4297	fi
4298	fi
4299	done
4300	elif [[ $archive_system = DMF ]]
4301	then
4302	if [[ $files_for_pes = false ]]
4303	then
4304	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4305	locat=DMF
4306	exit
4307	else
4308	rm -rf $ARCHIVE/${frelout[$i]}
4309	cp -r ${frelout[$i]} $ARCHIVE
4310	fi
4311	file_saved=true
4312	elif [[ $archive_system = tivoli ]]
4313	then
4314	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4315	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4316	# GELEGT WERDEN
4317	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4318	chmod g+rx $tmp_data_catalog
4319	if [[ $files_for_pes = false ]]
4320	then
4321	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4322	else
4323	mkdir $tmp_data_catalog/${frelout[$i]}
4324	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4325	fi
4326
4327	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4328	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4329	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4330	if [[ $files_for_pes = false ]]
4331	then
4332	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4333	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4334	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4335	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4336	else
4337	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4338	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4339	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4340	fi
4341
4342	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4343	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4344	file_saved=true
4345
4346	elif [[ $archive_system = ut ]]
4347	then
4348	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4349	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4350	# GELEGT WERDEN
4351	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4352	chmod g+rx $tmp_data_catalog
4353	if [[ $files_for_pes = false ]]
4354	then
4355	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4356	else
4357	mkdir $tmp_data_catalog/${frelout[$i]}
4358	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4359	fi
4360
4361	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4362	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4363	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4364	if [[ $files_for_pes = false ]]
4365	then
4366	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4367	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4368	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4369	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4370	else
4371	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4372	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4373	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4374	fi
4375
4376	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4377	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4378	file_saved=true
4379
4380	else
4381	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4382	archive_save=false
4383	fi
4384	if [[ $file_saved = true ]]
4385	then
4386	if [[ $files_for_pes = false ]]
4387	then
4388	cat /dev/null > ${pathout[$i]}
4389	else
4390	mkdir -p ${pathout[$i]}
4391	fi
4392	fi
4393	fi
4394
4395	# APPEND AUF LOKALER MASCHINE
4396	if [[ "${actionout[$i]}" = "a" ]]
4397	then
4398	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4399	then
4400	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4401	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4402	else
4403	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4404	cat ${localout[$i]} >> ${pathout[$i]}
4405	fi
4406	fi
4407
4408	# KOPIEREN AUF LOKALER MASCHINE
4409	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4410	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4411	then
4412
4413	# KOPIEREN AUF EINPROZESSORMASCHINE
4414	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4415	then
4416	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4417	if [[ $link_local_output = true ]]
4418	then
4419	printf " using ln -f\n"
4420	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4421	fi
4422	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4423	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4424	then
4425	if [[ $link_local_output = true ]]
4426	then
4427	printf " ln failed, using cp...\n"
4428	fi
4429	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4430	fi
4431	else
4432	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4433	if [[ $link_local_output = true ]]
4434	then
4435	printf " using ln -f\n"
4436	ln -f ${localout[$i]} ${pathout[$i]}
4437	fi
4438	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4439	if [[ ! -f "${pathout[$i]}" ]]
4440	then
4441	if [[ $link_local_output = true ]]
4442	then
4443	printf " ln failed, using cp...\n"
4444	fi
4445	cp ${localout[$i]} ${pathout[$i]}
4446	fi
4447	fi
4448
4449	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4450	then
4451
4452	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4453	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4454	# WIRD DANN KOPIERT
4455	# PER MOVE UMBENANNT WERDEN
4456	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4457	if [[ $link_local_output = true ]]
4458	then
4459	printf " using ln -f\n"
4460	mkdir ${pathout[$i]}
4461	cd ${localout[$i]}
4462	for file in $(ls *)
4463	do
4464	ln -f $file ${pathout[$i]}
4465	done
4466	cd $TEMPDIR
4467	fi
4468	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4469	if [[ ! -f "${pathout[$i]}/_0000" ]]
4470	then
4471	if [[ $link_local_output = true ]]
4472	then
4473	printf " ln failed for .../_0000, using cp...\n"
4474	fi
4475	cp -r ${localout[$i]} ${pathout[$i]}
4476	fi
4477
4478	fi
4479	fi
4480	done
4481	if (( i != 0 ))
4482	then
4483	if [[ $transfer_problems = true ]]
4484	then
4485	printf "\n$striche\n *** OUTPUT-files saved"
4486	printf "\n +++ WARNING: some data transfers failed! \n"
4487	else
4488	printf "\n$striche\n *** all OUTPUT-files saved \n"
4489	fi
4490	fi
4491
4492
4493	# EVENTUELL FOLGEJOB STARTEN
4494	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4495	if [[ -f CONTINUE_RUN ]]
4496	then
4497
4498	if [[ $archive_save = true ]]
4499	then
4500
4501	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4502	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4503	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4504	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4505	# HANDEN
4506	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4507	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4508	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4509	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4510	then
4511	mc=`echo $mc \| sed 's/#/f/g'`
4512	fi
4513
4514
4515	# JOB STARTEN
4516	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4517	echo " $mc"
4518	printf "\n$striche\n"
4519	if [[ $localhost != $fromhost ]]
4520	then
4521
4522	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4523	then
4524	echo "*** ssh will be used to initiate restart-runs!"
4525	echo " return_addres=\"$return_addres\" "
4526	echo " return_username=\"$return_username\" "
4527	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4528	then
4529	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4530	else
4531	if [[ $localhost = ibmkisti ]]
4532	then
4533	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4534	else
4535	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4536	fi
4537	fi
4538	else
4539	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4540	locat=restart; exit
4541	fi
4542
4543	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4544	# DER AKTUELLE JOB ENDET
4545	if [[ $queue = special1q ]]
4546	then
4547	sleep 120
4548	else
4549	sleep 30
4550	fi
4551
4552	else
4553
4554	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4555	# RUFEN WERDEN, AUSSER AUF lcfimm
4556	cd $LOCAL_PWD
4557	if [[ $localhost = lcfimm ]]
4558	then
4559	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4560	else
4561	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4562	fi
4563	cd - > /dev/null
4564	fi
4565	printf "\n$striche\n *** restart-run initiated \n"
4566
4567
4568	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4569	# GEHOLT WORDEN SIND, LOESCHEN
4570	(( i = 0 ))
4571	while (( i < iin ))
4572	do
4573	(( i = i + 1 ))
4574	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4575	then
4576	rm -r $tmp_data_catalog/${frelin[$i]}
4577	fi
4578	done
4579
4580	else
4581
4582	printf "\n +++ no restart-run possible, since errors occured"
4583	printf "\n during the archive process"
4584	fi
4585
4586	fi
4587
4588
4589
4590	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4591	if [[ "$email_notification" != "none" ]]
4592	then
4593
4594	if [[ $localhost != $fromhost ]]
4595	then
4596	if [[ -f CONTINUE_RUN ]]
4597	then
4598	echo "PALM restart run necessary" > email_text
4599	echo "description header of actual run:" >> email_text
4600	cat CONTINUE_RUN >> email_text
4601	echo "mrun-command to restart:" >> email_text
4602	echo "$mc" >> email_text
4603	else
4604	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4605	fi
4606	mail $email_notification < email_text
4607	printf "\n *** email notification sent to \"$email_notification\" "
4608	fi
4609	fi
4610
4611
4612
4613	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4614	cd $HOME
4615	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4616
4617	else
4618
4619
4620	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4621	# CHENDE AKTIONEN DURCHGEFUEHRT
4622
4623	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4624	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4625	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4626	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4627	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4628	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4629	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4630	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4631	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4632	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4633	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4634	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4635	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4636	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4637	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4638	if [[ $use_openmp = true ]]
4639	then
4640	mrun_com=${mrun_com}" -O $threads_per_task"
4641	fi
4642	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4643	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4644	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4645	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4646	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4647	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4648	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4649	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4650	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4651	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4652	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4653	if [[ $do_remote = true ]]
4654	then
4655	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4656	fi
4657
4658
4659	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4660	jobfile=jobfile.$RANDOM
4661
4662
4663	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4664	echo "mkdir $TEMPDIR" >> $jobfile
4665	echo "cd $TEMPDIR" >> $jobfile
4666
4667
4668	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4669	if [[ $do_trace = true ]]
4670	then
4671	echo "set -x" >> $jobfile
4672	else
4673	echo "set +vx" >> $jobfile
4674	fi
4675
4676
4677	# initialize the environment and load modules
4678	if [[ "$init_cmds" != "" ]]
4679	then
4680	echo "$init_cmds" >> $jobfile
4681	fi
4682	if [[ "$module_calls" != "" ]]
4683	then
4684	echo "$module_calls" >> $jobfile
4685	fi
4686
4687
4688	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4689	# DATEI FUER DEN JOB
4690	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4691	then
4692
4693	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4694	# KOPIEREN
4695	if [[ $restart_run != true ]]
4696	then
4697	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4698	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4699	fi
4700
4701	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4702	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4703	echo "set -x" >> $jobfile
4704	if [[ $host = $localhost ]]
4705	then
4706	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4707	else
4708	if [[ $host != ibmkisti ]]
4709	then
4710	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4711	else
4712	# on KISTI's IBM firewall is only opened on interactive node
4713	echo "localdir=\`pwd\`" >> $jobfile
4714	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4715	fi
4716	fi
4717	echo "export SOURCES_COMPLETE=true" >> $jobfile
4718
4719	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4720	# ARBEITSVERZEICHNIS VERSCHIEBEN
4721	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4722	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4723	echo "execute_mrun=true" >> $jobfile
4724	echo " " >> $jobfile
4725
4726	else
4727
4728	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4729	# SOWIE GEGEBENENFALLS DES MAKEFILES
4730	if [[ $do_compile = true ]]
4731	then
4732
4733	source_catalog=SOURCES_FOR_RUN_$fname
4734
4735	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4736	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4737	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4738	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4739	echo "export SOURCES_COMPLETE=true" >> $jobfile
4740	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4741
4742	for filename in $source_list
4743	do
4744	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4745	echo "cat > $filename << \"%END%\"" >> $jobfile
4746	cat $source_catalog/$filename >> $jobfile
4747	echo " " >> $jobfile
4748	echo "%END%" >> $jobfile
4749	echo " " >> $jobfile
4750	done
4751
4752	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4753	echo "cat > Makefile << \"%END%\"" >> $jobfile
4754	cat $source_catalog/Makefile >> $jobfile
4755	echo " " >> $jobfile
4756	echo "%END%" >> $jobfile
4757	echo " " >> $jobfile
4758
4759	echo "cd - > /dev/null" >> $jobfile
4760
4761	fi
4762
4763
4764	# ABSPEICHERN DER KONFIGURATIONSDATEI
4765	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4766	echo "cat > $config_file << \"%END%\"" >> $jobfile
4767	cat $config_file >> $jobfile
4768	echo "%END%" >> $jobfile
4769	echo " " >> $jobfile
4770
4771
4772	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4773	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4774	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4775	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4776	echo "%END%" >> $jobfile
4777	echo "chmod u+x $mrun_script_name" >> $jobfile
4778	echo "execute_mrun=true" >> $jobfile
4779	echo " " >> $jobfile
4780
4781	fi
4782
4783
4784	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4785	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4786	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4787	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4788	if [[ $do_remote = true ]]
4789	then
4790	(( i = 0 ))
4791	while (( i < iin ))
4792	do
4793	(( i = i + 1 ))
4794	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4795	if [[ "${transin[$i]}" = job ]]
4796	then
4797	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4798	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4799	echo " " >> $jobfile
4800	echo "%END%" >> $jobfile
4801	else
4802	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4803	fi
4804
4805	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4806	echo "if [[ \$? = 1 ]]" >> $jobfile
4807	echo "then" >> $jobfile
4808	echo " echo \" \" " >> $jobfile
4809	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4810	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4811	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4812	echo " execute_mrun=false" >> $jobfile
4813	echo "fi" >> $jobfile
4814	done
4815	fi
4816
4817	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4818	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4819	echo "LOCAL_PWD=$working_directory" >> $jobfile
4820	echo "export LOCAL_PWD" >> $jobfile
4821
4822	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4823	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4824	echo "export LOCAL_MRUN_PATH" >> $jobfile
4825
4826	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4827	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4828	then
4829	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4830	fi
4831
4832	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4833	echo "set -x" >> $jobfile
4834	echo "queue=$queue" >> $jobfile
4835	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4836
4837	echo 'ls -al; echo `pwd`' >> $jobfile
4838	echo "cd \$HOME" >> $jobfile
4839	echo "rm -rf $TEMPDIR" >> $jobfile
4840
4841
4842
4843
4844	# JOB PER SUBJOB STARTEN
4845	if [[ $silent = false ]]
4846	then
4847	printf "\n "
4848	else
4849	printf "\n\n"
4850	fi
4851
4852	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4853	rm -rf $jobfile
4854
4855
4856	fi # ENDE REMOTE-TEIL
4857
4858
4859
4860	# ENDE DER PROZEDUR

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