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source: palm/trunk/SCRIPTS/mrun @ 1090

Last change on this file since 1090 was 1090, checked in by raasch, 11 years ago
script adjustments for Kyushu-University computing center (lckyut)
Property svn:keywords set to `Id Rev`
File size: 175.8 KB

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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# adjustments for Kyushu-University computing center (lckyut)
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1090 2013-02-02 07:06:13Z raasch $
29	#
30	# 1083 2013-01-04 10:22:09Z maronga
31	# bugfix in parameter file check (read %cpp_options was missing)
32	#
33	# 1069 2012-11-28 16:18:43Z maronga
34	# bugfix: coupling mode was always set to mpi2, typos removed
35	#
36	# 1058 2012-11-21 07:00:35Z raasch
37	# Intel inspector (inspxe) is given the number of PEs instead of the number of
38	# nodes
39	#
40	# 1046 2012-11-09 14:38:45Z maronga
41	# code put under GPL (PALM 3.9)
42	#
43	# 21/03/94 - Siggi - first version finished
44	# 03/03/94 - Siggi - script development started
45	#
46	#--------------------------------------------------------------------------------#
47	# mrun - script for running PALM jobs
48	#--------------------------------------------------------------------------------#
49
50
51
52	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
53
54	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
55	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
56	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
57
58	AddFilenames=""
59	additional_conditions=""
60	add_source_path=""
61	afname=""
62	archive_save=true
63	archive_system=none
64	check_namelist_files=true
65	combine_plot_fields=true
66	compiler_name=""
67	cond1=""
68	cond2=""
69	config_file=.mrun.config
70	coupled_dist=""
71	coupled_mode="mpi1"
72	cpp_opts=""
73	cpp_options=""
74	cpumax=0
75	cpurest=0
76	delete_temporary_catalog=true
77	do_batch=false
78	do_compile=true
79	do_remote=false
80	do_stagein=true
81	do_stageout=true
82	do_trace=false
83	email_notification="none"
84	exclude=""
85	executable=""
86	execution_error=false
87	fimm=false
88	fname=test
89	fromhost=""
90	global_revision=""
91	group_number=none
92	host=""
93	host_file=""
94	hp=""
95	ignore_archive_error=false
96	input_list=""
97	interpreted_config_file=""
98	job_catalog="~/job_queue"
99	job_on_file=""
100	keep_data_from_previous_run=false
101	link_local_input=false
102	link_local_output=false
103	localhost_realname=$(hostname)
104	local_compile=false
105	local_dvrserver_running=.FALSE.
106	locat=normal
107	mainprog=""
108	makefile=""
109	max_par_io_str=""
110	mc=$0
111	while [[ $(echo $mc \| grep -c "/") != 0 ]]
112	do
113	mc=`echo $mc \| cut -f2- -d"/"`
114	done
115	module_calls=""
116	mrun_script_name=$mc
117	netcdf_inc=""
118	netcdf_lib=""
119	netcdf_support=false
120	node_usage=default
121	numprocs=""
122	numprocs_atmos=0
123	numprocs_ocean=0
124	OOPT=""
125	openmp=false
126	output_list=""
127	package_list=""
128	punkte="..........................................................."
129	queue=none
130	read_from_config=""
131	restart_run=false
132	if [[ `hostname` = rte10 ]]
133	then
134	return_addres=133.5.185.60
135	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
136	elif [[ `hostname` = climate0 ]]
137	then
138	return_addres=165.132.26.68
139	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
140	elif [[ `hostname` = urban00 ]]
141	then
142	return_addres=147.46.30.151
143	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
144	else
145	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
146	fi
147	return_password=""
148	return_username=$LOGNAME
149	remotecall=false
150	remote_username=""
151	run_coupled_model=false
152	run_mode=""
153	scirocco=false
154	store_on_archive_system=false
155	striche=" ----------------------------------------------------------------------------"
156	silent=false
157	source_list=""
158	source_path=SOURCE
159	tasks_per_node=""
160	threads_per_task=1
161	tmpcreate=false
162	tmp_data_catalog=""
163	transfer_problems=false
164	usern=$LOGNAME
165	use_openmp=false
166	working_directory=`pwd`
167	TOPT=""
168	XOPT=""
169	zeit=$( date \| cut -c 12-19 )
170
171	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
172	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
173
174	typeset -R30 calltime
175	typeset -L20 spalte1
176	typeset -L40 spalte2
177	typeset -L60 spalte3
178	typeset -L35 string1=`date`
179	typeset -L12 string2=$usern
180	typeset -L12 string3=$localhost_realname
181	typeset -L12 string4
182	typeset -L12 string5
183	typeset -L30 version="MRUN 2.0 Rev$Rev: 1090 $"
184
185
186
187	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
188	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
189
190	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
191	# EXPORTIERT WERDEN
192	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
193	export group_number input_list memory numprocs output_list queue run_mode
194
195
196
197	# FEHLERBEHANDLUNG
198	# BEI EXIT:
199	trap 'rm -rf $working_directory/tmp_mrun
200	if [[ $locat != localhost ]]
201	then
202	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
203	# then
204	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
205	#MRUN-calls on $localhost
206	#
207	#date and time user localhost remotehost termination mrun-command
208	#--------------------------------------------------------------------------------------------------------------------
209	#%STATEND%
210	# chmod 666 ${mrun_path}/statistik/mrun_statistik
211	# fi
212	#
213	# # EINTRAG IN DIE STATISTIK-DATEI
214	# string4=$host
215	# string5=$locat
216	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
217	# then
218	# if [[ $do_batch = true ]]
219	# then
220	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
221	# else
222	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
223	# fi
224	# fi
225	echo " " > /dev/null
226	fi
227
228	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
229	then
230
231	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
232	(( i = 0 ))
233	while (( i < iec ))
234	do
235	(( i = i + 1 ))
236	printf "\n *** Execution of ERROR-command:\n"
237	printf " >>> ${err_command[$i]}\n"
238	eval ${err_command[$i]}
239	done
240	if [[ -n $interpreted_config_file ]] then
241	rm -rf $interpreted_config_file
242	fi
243	if [[ -n .mrun_environment ]] then
244	rm -rf .mrun_environment
245	fi
246	if [[ $tmpcreate = true ]]
247	then
248	printf "\n *** Contents of \"$TEMPDIR\":\n"
249	ls -al; cd
250	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
251	fi
252	if [[ "$dvrserver_id" != "" ]]
253	then
254	echo "+++ killing dvrserver_id=$dvrserver_id"
255	kill $dvrserver_id
256	fi
257	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
258	then
259	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
260	fi
261	printf "\n\n+++ MRUN killed \n\n"
262	elif [[ $locat != control_c ]]
263	then
264	printf "\n\n --> all actions finished\n\n"
265	printf " Bye, bye $usern !!\n\n"
266	fi' exit
267
268
269	# BEI TERMINAL-BREAK:
270	trap 'rm -rf $working_directory/tmp_mrun
271	rm -rf $working_directory/tmp_check_namelist_files
272	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
273	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
274	then
275	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
276	fi
277	if [[ "$dvrserver_id" != "" ]]
278	then
279	echo "+++ killing dvrserver_id=$dvrserver_id"
280	kill $dvrserver_id
281	fi
282	printf "\n+++ MRUN killed by \"^C\" \n\n"
283	locat=control_c
284	exit
285	' 2
286
287
288	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
289	# BEEN SET
290	if [[ "$PALM_BIN" = "" ]]
291	then
292	printf "\n +++ environment variable PALM_BIN has not been set"
293	printf "\n please set it to the directory where the PALM scripts are located"
294	locat=palm_bin; exit
295	fi
296	export PATH=$PALM_BIN:$PATH
297
298
299
300	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
301	# FUER FOLGEJOBS BENOETIGT WIRD
302	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
303	do
304	case $option in
305	(a) afname=$OPTARG;;
306	(A) store_on_archive_system=true; mc="$mc -A";;
307	(b) do_batch=true; mc="$mc -b";;
308	(B) delete_temporary_catalog=false; mc="$mc -B";;
309	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
310	(C) restart_run=true; mc="$mc -C";;
311	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
312	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
313	(F) job_on_file="-D"; mc="$mc -F";;
314	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
315	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
316	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
317	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
318	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
319	(I) ignore_archive_error=true; mc="$mc -I";;
320	(k) keep_data_from_previous_run=true; mc="$mc -k";;
321	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
322	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
323	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
324	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
325	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
326	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
327	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
328	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
329	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
330	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
331	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
332	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
333	(S) read_from_config=false; mc="$mc -S";;
334	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
335	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
336	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
337	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
338	(v) silent=true; mc="$mc -v";;
339	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
340	(x) do_trace=true;set -x; mc="$mc -x";;
341	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
342	(y) ocean_file_appendix=true; mc="$mc -y";;
343	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
344	(z) check_namelist_files=false; mc="$mc -z";;
345	(Z) combine_plot_fields=false; mc="$mc -Z";;
346	(\?) printf "\n +++ unknown option $OPTARG \n"
347	printf "\n --> type \"$0 ?\" for available options \n"
348	locat=parameter;exit;;
349	esac
350	done
351
352
353	# EVTL. POSITIONSPARAMETER EINLESEN
354	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
355	shift OPTIND-1
356
357
358	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
359	if [[ "$1" = "?" ]]
360	then
361	(printf "\n *** mrun can be called as follows:\n"
362	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
363	printf "\n Description of available options:\n"
364	printf "\n Option Description Default-Value"
365	printf "\n -a base name of input files equiv. -d"
366	printf "\n -A archiving when using file-attribute fl"
367	printf "\n -b batch-job on local machine ---"
368	printf "\n -B do not delete temporary directory at end ---"
369	printf "\n -c configuration file .mrun.config"
370	printf "\n -d base name of files attached to program test"
371	printf "\n -D preprocessor(cpp)-directives \"\" "
372	printf "\n -F create remote job file only ---"
373	printf "\n -h execution host $localhost_realname"
374	printf "\n -i INPUT control list \"\" "
375	printf "\n -I archiving errors of previous batch-jobs"
376	printf "\n will be ignored"
377	printf "\n -k keep data from previous run"
378	printf "\n -K additional conditions for controling"
379	printf "\n usage of conditional code and"
380	printf "\n env-variables in configuration file \"\" "
381	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
382	printf "\n -M Makefile name Makefile"
383	printf "\n -n node usage (shared/not_shared) depending on -h"
384	printf "\n -o OUTPUT control list \"\" "
385	printf "\n -O use OpenMP ---"
386	printf "\n -p software package list \"\" "
387	printf "\n -q queue \"$queue\" "
388	printf "\n -r run control list (combines -i -o) \"\" "
389	printf "\n -s filenames of routines to be compiled \"\" "
390	printf "\n must end with .f, .f90, .F, or .c !"
391	printf "\n use \"..\" for more than one file and wildcards"
392	printf "\n -s LM compiles all locally modified files"
393	printf "\n -S config file interpreted by shellscript ---"
394	printf "\n -t allowed cpu-time in seconds (batch) 0"
395	printf "\n -T tasks per node depending on -h"
396	printf "\n -u username on remote machine \"\" "
397	printf "\n -v no prompt for confirmation ---"
398	printf "\n -w maximum parallel io streams as given by -X"
399	printf "\n -x tracing of mrun for debug purposes ---"
400	printf "\n -X # of processors (on parallel machines) 1"
401	printf "\n -y add appendix \"_O\" to all local output"
402	printf "\n files (ocean precursor runs followed by"
403	printf "\n coupled atmosphere-ocean runs) ---"
404	printf "\n -Y run coupled model, \"#1 #2\" with"
405	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
406	printf "\n -z disable a priori parameter file check ---"
407	printf "\n -Z skip combine_plot_fields at the end of "
408	printf "\n the simulation ---"
409	printf "\n "
410	printf "\n Possible values of positional parameter <modus>:"
411	printf "\n \"?\" - this outline \n\n") \| more
412	exit
413	elif [[ "$1" != "" ]]
414	then
415	printf "\n +++ positional parameter $1 unknown \n"
416	locat=parameter; exit
417	fi
418
419
420
421	# KURZE STARTMELDUNG
422	printf "\n*** $version "
423	printf "\n will be executed. Please wait ..."
424
425
426
427	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
428	if [[ ! -f $config_file ]]
429	then
430	printf "\n\n +++ configuration file: "
431	printf "\n $config_file"
432	printf "\n does not exist"
433	locat=connect; exit
434	fi
435
436
437	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
438	line=""
439	grep "%host_identifier" $config_file > tmp_mrun
440	while read line
441	do
442	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
443	then
444	HOSTNAME=`echo $line \| cut -d" " -s -f2`
445	host_identifier=`echo $line \| cut -d" " -s -f3`
446	if [[ $localhost_realname = $HOSTNAME ]]
447	then
448	localhost=$host_identifier
449	break
450	fi
451	fi
452	done < tmp_mrun
453
454	if [[ "$localhost" = "" ]]
455	then
456	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
457	printf "\n for local host \"$localhost_realname\"."
458	printf "\n Please add line"
459	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
460	printf "\n to the configuration file."
461	locat=localhost; exit
462	fi
463
464
465	# HOSTSPEZIFISCHE VARIABLEN SETZEN
466	case $localhost_realname in
467	(r1\|r2\|h01\|b01) archive_system=tivoli;;
468	(cs*) archive_system=ut;;
469	(fimm.bccs.uib.no) fimm=true;;
470	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
471	(scirocco) scirocco=true;;
472	esac
473
474
475
476	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
477	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
478	[[ "$afname" = "" ]] && afname=$fname
479
480
481	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
482	if [[ "$run_mode" != "" ]]
483	then
484	input_list="$input_list $run_mode"
485	output_list="$output_list $run_mode"
486	fi
487
488
489	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
490	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
491	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
492	# STARTET)
493	if [[ "$fromhost" = "" ]]
494	then
495	fromhost=$localhost
496	fi
497
498
499	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
500	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
501	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
502	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
503	if [[ -n $host && "$host" != $localhost ]]
504	then
505	do_batch=true
506	do_remote=true
507	case $host in
508	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
509	(*) printf "\n"
510	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
511	printf "\n is not available"
512	locat=nqs; (( iec = 0 )); exit;;
513	esac
514	else
515	host=$localhost
516	fi
517
518
519	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
520	if [[ -n $additional_conditions ]]
521	then
522	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
523	cond1=`echo $additional_conditions \| cut -d" " -f1`
524	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
525	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
526	if [[ -n $dummy ]]
527	then
528	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
529	locat=options; exit
530	fi
531	block=_$cond1
532	[[ -n $cond2 ]] && block=${block}_$cond2
533	fi
534
535
536	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
537	if [[ $run_coupled_model = true ]]
538	then
539
540	if [[ -n $coupled_dist ]]
541	then
542
543	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
544	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
545
546	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
547	then
548
549	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
550	printf "\n PEs (total) : $numprocs"
551	printf "\n PEs (atmosphere): $numprocs_atmos"
552	printf "\n PEs (ocean) : $numprocs_ocean"
553	locat=coupling; exit
554
555	fi
556
557	else
558
559	(( numprocs_ocean = $numprocs / 2 ))
560	(( numprocs_atmos = $numprocs / 2 ))
561
562	fi
563	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
564
565	# GET coupled_mode FROM THE CONFIG FILE
566	line=""
567	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
568	while read line
569	do
570	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
571	then
572	coupled_mode="mpi2"
573	fi
574	done < tmp_mrun
575
576	fi
577
578
579	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
580	# ARCHIVIERUNG FEHLGESCHLAGEN IST
581	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
582	then
583	if [[ $ignore_archive_error = false ]]
584	then
585	printf "\n +++ data archiving of previous run failed"
586	printf "\n see directory \~/job_queue on remote machine"
587	locat=archive; exit
588	else
589	printf "\n +++ warning: data archiving in a previous run failed"
590	printf "\n MRUN continues, trying to get backup copy"
591	fi
592	fi
593
594
595
596	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
597	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
598	if [[ "$read_from_config" = false ]]
599	then
600
601	[[ $silent = false ]] && printf "\n Reading the configuration file... "
602	while read zeile
603	do
604	[[ $silent = false ]] && printf "."
605
606
607	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
608	# ERSETZEN
609	eval zeile=\"$zeile\"
610
611
612	# INTERPRETATION DER ZEILE
613	if [[ "$(echo $zeile)" = "" ]]
614	then
615	# LEERZEILE, KEINE AKTION
616	continue
617
618	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
619	then
620
621	# ZEILE IST KOMMENTARZEILE
622	true
623
624	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
625	then
626
627	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
628	zeile=$(echo $zeile \| cut -c2-)
629	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
630	var=`echo $zeile \| cut -d" " -f1`
631	value=`echo $zeile \| cut -d" " -s -f2`
632	for_host=`echo $zeile \| cut -d" " -s -f3`
633	for_cond1=`echo $zeile \| cut -d" " -s -f4`
634	for_cond2=`echo $zeile \| cut -d" " -s -f5`
635
636	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
637	then
638
639	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
640	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
641	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
642
643
644	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
645	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
646	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
647	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
648	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
649	# KONFIGURATIONSDATEI
650	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
651	then
652	eval $var=\$value
653
654	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
655	if [[ $do_trace = true ]]
656	then
657	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
658	fi
659	fi
660
661	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
662	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
663	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
664	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
665	if [[ $var = host ]]
666	then
667	if [[ -n $host && "$host" != $localhost ]]
668	then
669	do_batch=true
670	do_remote=true
671	case $host in
672	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
673	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
674	printf "\n is not available"
675	locat=nqs; exit;;
676	esac
677	else
678	host=$localhost
679	fi
680	fi
681
682	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
683	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
684	# DEN PROGRAMMEN BENOETIGT WERDEN
685	export $var
686	fi
687
688
689
690
691	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
692	then
693
694	# ZEILE DEFINIERT ERROR-KOMMANDO
695	(( iec = iec + 1 ))
696	zeile=$(echo $zeile \| cut -c4-)
697	err_command[$iec]="$zeile"
698
699	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
700	then
701
702	# ZEILE DEFINIERT INPUT-KOMMANDO
703	(( iic = iic + 1 ))
704	zeile=$(echo $zeile \| cut -c4-)
705	in_command[$iic]="$zeile"
706
707	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
708	then
709
710	# ZEILE DEFINIERT OUTPUT-KOMMANDO
711	(( ioc = ioc + 1 ))
712	zeile=$(echo $zeile \| cut -c4-)
713	out_command[$ioc]="$zeile"
714
715	else
716
717	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
718	# s2a: in/out - Feld
719	# s2b: loc - Feld (optional)
720	# s2c: tr/ar - Feld (optional)
721	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
722	s1=`echo $zeile \| cut -d" " -f1`
723	s2=`echo $zeile \| cut -d" " -s -f2`
724	s2a=$(echo $s2 \| cut -d":" -f1)
725	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
726	then
727	s2b=""
728	s2c=""
729	else
730	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
731	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
732	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
733	fi
734	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
735	s3=`echo $zeile \| cut -d" " -f3`
736	s4=`echo $zeile \| cut -d" " -s -f4`
737	s5=`echo $zeile \| cut -d" " -s -f5`
738	s6=`echo $zeile \| cut -d" " -s -f6`
739
740
741	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
742	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
743	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
744	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
745	# HANDEN SEIN MUSS (D.H. s2b = loc)
746	IFSALT="$IFS"; IFS="$IFS:"
747	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
748	then
749	found=false
750	for actual in $input_list
751	do
752	for formal in $s3
753	do
754	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
755	done
756	done
757	if [[ $found = true ]]
758	then
759	(( iin = iin + 1 ))
760	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
761	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
762	extin[$iin]=$s6
763	fi
764	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
765	then
766	found=false
767	for actual in $output_list
768	do
769	for formal in $s3
770	do
771	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
772	done
773	done
774	if [[ $found = true ]]
775	then
776	(( iout = iout + 1 ))
777	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
778	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
779	fi
780	elif [[ "$s2a" != in && "$s2a" != out ]]
781	then
782	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
783	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
784	locat=connect; exit
785	fi
786	IFS="$IFSALT"
787	fi
788	done < $config_file
789
790	else
791
792
793	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
794	[[ $silent = false ]] && printf "..."
795	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
796	export interpreted_config_file=.icf.$RANDOM
797
798
799
800	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
801	# VERFUEGUNG STELLEN
802	cat > .mrun_environment << %%END%%
803	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
804	config_file = '$config_file', do_remote = '$do_remote',
805	do_trace = '$do_trace', host = '$host',
806	input_list = '$input_list', icf = '$interpreted_config_file',
807	localhost = '$localhost', output_list = '$output_list' /
808
809	%%END%%
810
811	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
812	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
813	mrun_memory=$memory
814	mrun_group_number=$group_number
815	mrun_cpumax=$cpumax
816	mrun_numprocs=$numprocs
817
818	if [[ $localhost_realname = "sx-fep" ]]
819	then
820	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
821	else
822
823	if [[ "$host" != $localhost ]]
824	then
825
826	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
827	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
828	if [[ $? != 0 ]]
829	then
830	printf "\n\n +++ no interpret_config found"
831	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
832	locat=interpret_config; exit
833	fi
834	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
835	$interpret_config_executable
836
837	else
838
839	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
840	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
841	then
842	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
843	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
844	locat=interpret_config; exit
845	else
846	interpret_config${block}.x
847	fi
848
849	fi
850	fi
851	rm .mrun_environment
852
853
854	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
855	chmod u+x $interpreted_config_file
856	export PATH=$PATH:.
857	. $interpreted_config_file
858	rm $interpreted_config_file
859
860
861	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
862	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
863	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
864	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
865	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
866	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
867	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
868
869	fi
870
871
872	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
873	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
874	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
875	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
876	if [[ "$SOURCES_COMPLETE" = "" ]]
877	then
878
879	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
880	# VEREINBART WURDE
881	source_path=""
882	line=""
883	grep "%source_path" $config_file > tmp_mrun
884	while read line
885	do
886	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
887	then
888	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
889	then
890	global_source_path=`echo $line \| cut -d" " -f2`
891	fi
892	fi
893	done < tmp_mrun
894
895	line=""
896	found=false
897	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
898	while read line
899	do
900	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
901	then
902	if [[ $found = true ]]
903	then
904	printf "\n\n +++ more than one source path found in configuration file"
905	printf "\n for local host \"$localhost\" "
906	locat=source_path; exit
907	fi
908	source_path=`echo $line \| cut -d" " -f2`
909	found=true
910	fi
911	done < tmp_mrun
912	rm tmp_mrun
913
914	if [[ "$source_path" = "" ]]
915	then
916	if [[ "$global_source_path" != "" ]]
917	then
918	source_path=$global_source_path
919	else
920	printf "\n\n +++ no source path found in configuration file"
921	printf "\n for local host \"$localhost\" "
922	locat=source_path; exit
923	fi
924	fi
925	eval source_path=$source_path
926
927	if [[ ! -d $source_path ]]
928	then
929	printf "\n\n +++ source path \"$source_path\" on local host"
930	printf "\n \"$localhost\" does not exist"
931	locat=source_path; exit
932	fi
933
934	fi
935
936
937	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
938	# DURCH OPTION -G MITGETEILT)
939	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
940	then
941	global_revision=`svnversion $source_path 2>/dev/null`
942	global_revision="Rev: $global_revision"
943	fi
944
945
946	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
947	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
948	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
949	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
950	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
951	if [[ -n $host && "$host" != $localhost ]]
952	then
953	do_batch=true
954	do_remote=true
955	case $host in
956	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyut\|lcsb) true;;
957	(*) printf "\n"
958	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
959	printf "\n is not available"
960	locat=nqs; (( iec = 0 )); exit;;
961	esac
962	else
963	host=$localhost
964	fi
965
966
967	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
968	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
969	then
970
971	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
972	if [[ ! -n $numprocs ]]
973	then
974	printf "\n"
975	printf "\n +++ option \"-K parallel\" requires additional specification"
976	printf "\n of the number of processors to be used by"
977	printf "\n mrun-option \"-X\" or by environment-variable"
978	printf "\n \"numprocs\" in the configuration file"
979	locat=numprocs; (( iec = 0 )); exit
980	fi
981
982	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
983	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
984	# GESAMTPROZESSORANZAHL IST
985	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
986	then
987	printf "\n"
988	printf "\n +++ option \"-T\" (tasks per node) is missing"
989	printf "\n set -T option or define tasks_per_node in the config file"
990	locat=tasks_per_node; (( iec = 0 )); exit
991	fi
992	if [[ $host != lcflow && $host != lcxt5m ]]
993	then
994	(( ival = $tasks_per_node ))
995	(( pes = numprocs ))
996	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
997	# then
998	# (( pes = pes - 1 ))
999	# fi
1000	(( ii = pes / ival ))
1001	if (( pes - ii * ival > 0 ))
1002	then
1003	printf "\n"
1004	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1005	printf "\n divisor of the total number of processors (option \"-X\")"
1006	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1007	locat=tasks_per_node; (( iec = 0 )); exit
1008	fi
1009	fi
1010
1011
1012	# IBMY HAT NUR EINEN KNOTEN
1013	if [[ $host = ibmy ]]
1014	then
1015	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1016	then
1017	printf "\n"
1018	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1019	printf "\n total number of processors (option \"-X\")"
1020	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1021	locat=tasks_per_node; (( iec = 0 )); exit
1022	fi
1023	fi
1024
1025
1026	# SETTINGS FOR SUBJOB-COMMAND
1027	TOPT="-T $tasks_per_node"
1028	OOPT="-O $threads_per_task"
1029
1030	# GESAMTZAHL DER KNOTEN BESTIMMEN
1031	if [[ "$tasks_per_node" != "" ]]
1032	then
1033	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1034	fi
1035
1036	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1037	# SETZEN
1038	if [[ $node_usage = default ]]
1039	then
1040	if [[ $host = ibms ]]
1041	then
1042	node_usage=shared
1043	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1044	then
1045	node_usage=singlejob
1046	else
1047	node_usage=not_shared
1048	fi
1049	fi
1050
1051	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1052	then
1053	printf "\n"
1054	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1055	printf "\n \"shared\" or \"not_shared\""
1056	locat=tasks_per_node; (( iec = 0 )); exit
1057	fi
1058
1059	fi
1060
1061	# PRUEFEN, OB HOSTFILE EXISTIERT
1062	if [[ -n $hostfile ]]
1063	then
1064	if [[ ! -f $hostfile ]]
1065	then
1066	printf "\n"
1067	printf "\n +++ hostfile \"$hostfile\" does not exist"
1068	locat=hostfile; exit
1069	fi
1070	fi
1071
1072	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1073	if [[ $host = ibmy && $do_remote = false ]]
1074	then
1075	if [[ ! -f $HOME/.rhosts ]]
1076	then
1077	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1078	printf "\n\n *** file:"
1079	printf "\n $HOME/.rhosts"
1080	printf "\n was created\n"
1081	fi
1082	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1083	then
1084	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1085	printf "\n\n *** file:"
1086	printf "\n $HOME/.rhosts"
1087	printf "\n was extended by the name of the current host\n"
1088	fi
1089	fi
1090
1091
1092	# Set default value for the maximum number of parallel io streams
1093	if [[ "$maximum_parallel_io_streams" = "" ]]
1094	then
1095	maximum_parallel_io_streams=$numprocs
1096	fi
1097
1098
1099	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1100	if [[ $queue = none ]]
1101	then
1102	case $host in
1103	(ibmh) queue=no_class;;
1104	(ibmkisti) queue=class.32plus;;
1105	(ibmy) queue=parallel;;
1106	(lckiaps) queue=normal;;
1107	(lckyoto) queue=ph;;
1108	(lckyut) queue=cx-dbg;;
1109	(lcsgib) queue=testq;;
1110	(lcsgih) queue=testq;;
1111	(lctit) queue=S;;
1112	(nech) queue=none;;
1113	(necriam) queue=SP;;
1114	(unics) queue=unics;;
1115	esac
1116	fi
1117
1118
1119	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1120	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1121	# ERMITTELN
1122	(( i = 0 ))
1123	while (( i < iin ))
1124	do
1125	(( i = i + 1 ))
1126	(( maxcycle = 0 ))
1127
1128	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1129	if [[ "${actionin[$i]}" = di ]]
1130	then
1131	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1132	# REM-MASCHINE AUSWERTEN
1133	eval filename=${pathin[$i]}/${endin[$i]}
1134	else
1135	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1136	# REM-MASCHINE AUSWERTEN
1137	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1138	fi
1139	eval pathname=${pathin[$i]}
1140
1141	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1142	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1143	then
1144	filename_input=$filename
1145	fi
1146
1147	# PRUEFEN AUF VORHANDENSEIN
1148	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1149	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1150	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1151	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1152	then
1153	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1154	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1155	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1156	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1157	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1158	if [[ "${transin[$i]}" != "locopt" ]]
1159	then
1160	printf "\n\n +++ INPUT-file: "
1161	if [[ "${extin[$i]}" = "" ]]
1162	then
1163	printf "\n $filename"
1164	else
1165	printf "\n $filename.${extin[$i]}"
1166	fi
1167	printf "\n does not exist\n"
1168	locat=input; exit
1169	else
1170	transin[$i]="unavailable"
1171	fi
1172	else
1173
1174	# ZYKLUSNUMMER FESTSTELLEN
1175	ls -1 -d $filename > filelist 2>/dev/null
1176	ls -1 -d $filename.* >> filelist 2>/dev/null
1177	while read zeile
1178	do
1179	cycle=$(print $zeile \| cut -f2 -d".")
1180	if [[ "$cycle" = "$zeile" ]]
1181	then
1182	(( icycle = 0 ))
1183	elif [[ "$cycle" = "${extin[$i]}" ]]
1184	then
1185	(( icycle = 0 ))
1186	else
1187	(( icycle = $cycle ))
1188	fi
1189	if (( icycle > maxcycle ))
1190	then
1191	(( maxcycle = icycle ))
1192	file_to_be_used=$zeile
1193	fi
1194	done <filelist
1195	rm filelist
1196
1197	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1198	if (( maxcycle > 0 ))
1199	then
1200	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1201	then
1202	filename=${filename}.$maxcycle.${extin[$i]}
1203	else
1204	filename=${filename}.$maxcycle
1205	fi
1206	else
1207	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1208	then
1209	filename=${filename}.${extin[$i]}
1210	fi
1211	fi
1212
1213	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1214	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1215	absnamein[$i]=$filename
1216	if (( maxcycle > 0 ))
1217	then
1218	if [[ "${actionin[$i]}" = di ]]
1219	then
1220	frelin[$i]=${endin[$i]}.$maxcycle
1221	else
1222	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1223	fi
1224	else
1225	if [[ "${actionin[$i]}" = di ]]
1226	then
1227	frelin[$i]=${endin[$i]}
1228	else
1229	frelin[$i]=${afname}${endin[$i]}
1230	fi
1231	fi
1232
1233	fi
1234	done
1235
1236	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1237	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1238	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1239	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1240	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1241	(( i = 0 ))
1242	while (( i < iout ))
1243	do
1244	(( i = i + 1 ))
1245	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1246	then
1247	if [[ "${actionout[$i]}" = tr ]]
1248	then
1249	actionout[$i]=""
1250	elif [[ "${actionout[$i]}" = trpe ]]
1251	then
1252	actionout[$i]=pe
1253	elif [[ "${actionout[$i]}" = tra ]]
1254	then
1255	actionout[$i]=a
1256	fi
1257	(( maxcycle = 0 ))
1258	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1259	eval catalogname=${pathout[$i]}
1260	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1261	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1262	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1263	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1264	then
1265
1266	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1267	if cat /dev/null > $filename
1268	then
1269	rm $filename
1270	else
1271
1272	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1273	if [[ ! -d $catalogname ]]
1274	then
1275	if mkdir -p $catalogname
1276	then
1277	printf "\n\n *** directory:"
1278	printf "\n $catalogname"
1279	printf "\n was created\n"
1280	else
1281	printf "\n\n +++ OUTPUT-file:"
1282	printf "\n $filename"
1283	printf "\n cannot be created, because directory does not exist"
1284	printf "\n and cannot be created either"
1285	printf "\n"
1286	locat=output ; exit
1287	fi 2>/dev/null
1288	else
1289	printf "\n\n +++ OUTPUT-file:"
1290	printf "\n $filename"
1291	printf "\n cannot be created, although directory exists"
1292	printf "\n"
1293	locat=output ; exit
1294	fi
1295	fi 2>/dev/null
1296	else
1297
1298	# ZYKLUSNUMMER FESTSTELLEN
1299	ls -1 -d $filename > filelist 2>/dev/null
1300	ls -1 -d $filename.* >> filelist 2>/dev/null
1301	while read zeile
1302	do
1303	cycle=$(print $zeile \| cut -f2 -d".")
1304	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1305	then
1306	(( icycle = 1 ))
1307	else
1308	(( icycle = $cycle + 1 ))
1309	fi
1310	if (( icycle > maxcycle ))
1311	then
1312	(( maxcycle = icycle ))
1313	fi
1314	done <filelist
1315	rm filelist
1316	fi
1317
1318	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1319	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1320	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1321	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1322	if [[ "${actionout[$i]}" != a ]]
1323	then
1324	if (( maxcycle > 0 ))
1325	then
1326	filename=${filename}.$maxcycle
1327	if cat /dev/null > $filename
1328	then
1329	rm $filename
1330	else
1331	printf "\n +++ OUTPUT-file:"
1332	printf "\n $filename"
1333	printf "\n cannot be created"
1334	locat=output ; exit
1335	fi
1336	fi
1337	else
1338	(( maxcycle = maxcycle - 1 ))
1339	if (( maxcycle > 0 ))
1340	then
1341	filename=${filename}.$maxcycle
1342	fi
1343	fi
1344
1345	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1346	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1347	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1348	pathout[$i]=$filename
1349	if (( maxcycle > 0 ))
1350	then
1351	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1352	else
1353	frelout[$i]=${fname}${endout[$i]}
1354	fi
1355
1356	fi
1357	done
1358
1359
1360	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1361	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1362	then
1363	if [[ "$dvr_inc" = "" ]]
1364	then
1365	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1366	printf "\n This is required for the dvrp_graphics package.\n"
1367	locat=dvr; exit
1368	fi
1369	if [[ "$dvr_lib" = "" ]]
1370	then
1371	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1372	printf "\n This is required for the dvrp_graphics package.\n"
1373	locat=dvr; exit
1374	fi
1375	fi
1376
1377
1378	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1379	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1380	# UEBERSETZT ZU WERDEN)
1381	if [[ "$mainprog" = "" && "$executable" = "" ]]
1382	then
1383	printf "\n +++ neither main program nor executable defined"
1384	locat=source; exit
1385	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1386	then
1387	printf "\n +++ main program as well as executable defined"
1388	locat=source; exit
1389	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1390	then
1391	do_compile=false
1392	fi
1393
1394
1395	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1396	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1397	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1398	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1399	then
1400	rm -rf SOURCES_FOR_RUN_$fname
1401	mkdir SOURCES_FOR_RUN_$fname
1402	fi
1403
1404
1405	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1406	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1407	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1408	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1409	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1410	then
1411
1412	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1413
1414	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1415	then
1416
1417	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1418	source_list=""
1419	cd $source_path
1420
1421
1422	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1423	if [[ ! -d .svn ]]
1424	then
1425	printf "\n\n +++ source directory"
1426	printf "\n \"$source_path\" "
1427	printf "\n is not under control of \"subversion\"."
1428	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1429	fi
1430
1431
1432	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1433	Filenames=""
1434	svn status > tmp_mrun
1435	while read line
1436	do
1437	firstc=`echo $line \| cut -c1`
1438	if [[ $firstc = M \|\| $firstc = "?" ]]
1439	then
1440	Name=`echo "$line" \| cut -c8-`
1441	extension=`echo $Name \| cut -d. -f2`
1442	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1443	then
1444	Filenames="$Filenames "$Name
1445	fi
1446	fi
1447	done < tmp_mrun
1448
1449
1450	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1451	for dateiname in $Filenames
1452	do
1453	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1454	source_list=$source_list"$dateiname "
1455	done
1456
1457	cd - > /dev/null
1458
1459
1460	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1461	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1462	# VORHANDEN
1463	elif [[ "$source_list" != "" && $restart_run != true ]]
1464	then
1465
1466	cd $source_path
1467
1468	for filename in $source_list
1469	do
1470
1471	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1472	if [[ $(print $filename \| grep -c "/") != 0 ]]
1473	then
1474	printf "\n +++ source code file: $filename"
1475	printf "\n must not contain (\"/\") "
1476	locat=source; exit
1477	fi
1478
1479	if [[ ! -f $filename ]]
1480	then
1481	printf "\n +++ source code file: $filename"
1482	printf "\n does not exist"
1483	locat=source; exit
1484	else
1485	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1486	fi
1487
1488	done
1489
1490	cd - > /dev/null
1491
1492	fi
1493
1494
1495	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1496	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1497	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1498	if [[ $restart_run != true ]]
1499	then
1500
1501	if [[ ! -f "$source_path/$mainprog" ]]
1502	then
1503	printf "\n\n +++ main program: $mainprog"
1504	printf "\n does not exist in source directory"
1505	printf "\n \"$source_path\"\n"
1506	locat=source; exit
1507	else
1508	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1509	then
1510	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1511	source_list=${mainprog}" $source_list"
1512	fi
1513	fi
1514	fi
1515
1516
1517	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1518	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1519	if [[ "$restart_run" != true ]]
1520	then
1521	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1522	if [[ ! -f $makefile ]]
1523	then
1524	printf "\n +++ file \"$makefile\" does not exist"
1525	locat=make; exit
1526	else
1527	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1528	fi
1529	fi
1530
1531
1532	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1533	if [[ $restart_run != true && "$add_source_path" != "" ]]
1534	then
1535
1536	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1537	if [[ ! -d $add_source_path ]]
1538	then
1539	printf "\n\n +++ WARNING: additional source code directory"
1540	printf "\n \"$add_source_path\" "
1541	printf "\n does not exist or is not a directory."
1542	printf "\n No source code will be used from this directory!\n"
1543	add_source_path=""
1544	if [[ $silent == false ]]
1545	then
1546	sleep 3
1547	fi
1548	else
1549
1550	cd $add_source_path
1551	found=false
1552
1553	Names=$(ls -1 *.f90 2>&1)
1554	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1555	Names=$(ls -1 *.F90 2>&1)
1556	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1557	Names=$(ls -1 *.F 2>&1)
1558	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1559	Names=$(ls -1 *.f 2>&1)
1560	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1561	Names=$(ls -1 *.c 2>&1)
1562	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1563
1564	cd - > /dev/null
1565	cd SOURCES_FOR_RUN_$fname
1566
1567	# COPY MAKEFILE IF EXISTING
1568	if [[ -f $add_source_path/Makefile ]]
1569	then
1570	printf "\n\n *** user Makefile from directory"
1571	printf "\n \"$add_source_path\" is used \n"
1572	if [[ $silent == false ]]
1573	then
1574	sleep 1
1575	fi
1576	cp $add_source_path/Makefile .
1577	fi
1578
1579	for dateiname in $AddFilenames
1580	do
1581	if [[ -f $dateiname ]]
1582	then
1583	printf "\n +++ source code file \"$dateiname\" found in additional"
1584	printf "\n source code directory \"$add_source_path\" "
1585	printf "\n but was also given with option \"-s\" which means that it should be taken"
1586	printf "\n from directory \"$source_path\"."
1587	locat=source; exit
1588	fi
1589
1590	cp $add_source_path/$dateiname .
1591	source_list="$source_list $dateiname"
1592
1593	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1594	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1595	then
1596	printf "\n\n +++ user file \"$dateiname\" "
1597	printf "\n is not listed in Makefile \n"
1598	locat=source; exit
1599	else
1600
1601	# Default User-Interface von der Liste entfernen, falls Datei
1602	# ein User-Interface enthaelt
1603	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1604	# then
1605	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1606	# then
1607	# rm -rf user_interface.f90
1608	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1609	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1610	# printf "\n since a user-interface is found in file"
1611	# printf "\n \"$add_source_path/$dateiname\" \n"
1612	# sleep 3
1613	# else
1614	if [[ $found = false ]]
1615	then
1616	found=true
1617	printf "\n\n *** following user file(s) added to the"
1618	printf " files to be translated:\n "
1619	fi
1620	printf "$dateiname "
1621	if [[ $silent == false ]]
1622	then
1623	sleep 0.5
1624	fi
1625
1626	fi
1627	done
1628	[[ $found = true ]] && printf "\n"
1629	cd - > /dev/null
1630	fi
1631	fi
1632
1633
1634	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1635	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1636	if [[ $restart_run != true && -n $package_list ]]
1637	then
1638
1639	cd $source_path
1640
1641	for package in $package_list
1642	do
1643
1644	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1645
1646	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1647	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1648	# LIEFERT
1649	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1650
1651
1652	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1653	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1654	for source_list_name in $package_source_list
1655	do
1656	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1657	then
1658
1659	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1660	ending=`echo $source_list_name \| cut -f2 -d.`
1661	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1662	then
1663	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1664	source_list="$source_list $source_list_name"
1665	fi
1666	fi
1667	done
1668	done
1669
1670	cd - > /dev/null
1671	fi
1672
1673
1674	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1675	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1676	# if [[ "$restart_run" != true ]]
1677	# then
1678	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1679	# if [[ ! -f $makefile ]]
1680	# then
1681	# printf "\n +++ file \"$makefile\" does not exist"
1682	# locat=make; exit
1683	# else
1684	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1685	# fi
1686	# fi
1687
1688	fi # do_compile=true
1689
1690
1691	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1692	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1693	if [[ $do_compile = true ]]
1694	then
1695
1696	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1697	# ZUSAMMENSETZEN
1698	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1699	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1700	then
1701	cpp_options="${cpp_options},-D__ibm=__ibm"
1702	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1703	then
1704	cpp_options="$cpp_options -D__nec"
1705	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1706	then
1707	cpp_options="$cpp_options -D__lc"
1708	else
1709	cpp_options="$cpp_options -D__$localhost"
1710	fi
1711
1712	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1713	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1714	then
1715	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1716	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1717	else
1718	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1719	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1720	fi
1721
1722	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1723	if [[ -n $package_list ]]
1724	then
1725	for package in $package_list
1726	do
1727	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1728	then
1729	if [[ $package != "dvrp_graphics+1PE" ]]
1730	then
1731	cpp_options="${cpp_options},-D__$package=__$package"
1732	else
1733	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1734	export use_seperate_pe_for_dvrp_output=true
1735	fi
1736	else
1737	if [[ $package != "dvrp_graphics+1PE" ]]
1738	then
1739	cpp_options="$cpp_options -D__$package"
1740	else
1741	cpp_options="$cpp_options -D__dvrp_graphics"
1742	export use_seperate_pe_for_dvrp_output=true
1743	fi
1744	fi
1745	done
1746	fi
1747
1748	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1749	if [[ -n $cpp_opts ]]
1750	then
1751	for popts in $cpp_opts
1752	do
1753	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1754	then
1755	cpp_options="${cpp_options},-D__$popts=__$popts"
1756	else
1757	cpp_options="$cpp_options -D__$popts"
1758	fi
1759	done
1760	fi
1761
1762	else
1763
1764
1765	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1766	if [[ $do_remote = false ]]
1767	then
1768	if [[ ! -f $executable ]]
1769	then
1770	printf "\n +++ executable file: $executable"
1771	printf "\n does not exist"
1772	locat=executable; exit
1773	fi
1774	fi
1775	fi
1776
1777
1778	# JOBMODUS FESTSTELLEN
1779	if [[ "$ENVIRONMENT" = BATCH ]]
1780	then
1781	jobmo=BATCH
1782	else
1783	jobmo=INTERACTIVE
1784	fi
1785
1786
1787	# no interactive runs on lctit
1788	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1789	then
1790	printf "\n +++ no interactive runs allowed on host \"$host\" "
1791	printf "\n please submit batch job using mrun option \"-b\" \n"
1792	locat=normal; exit
1793	fi
1794
1795
1796	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1797	# DURCH BENUTZER ANDERWEITIG VEREINBART
1798	if [[ "$compiler_name" = "" ]]
1799	then
1800
1801	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1802	locat=compiler_name; exit
1803
1804	fi
1805
1806
1807	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1808	[[ $localhost = necriam ]] && compiler_name=mpif90
1809
1810
1811
1812	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1813	kennung=$RANDOM
1814	if [[ "$tmp_user_catalog" = "" ]]
1815	then
1816	if [[ $localhost = ibmh ]]
1817	then
1818	tmp_user_catalog=$SCRATCH
1819	elif [[ $localhost = nech ]]
1820	then
1821	tmp_user_catalog=$WRKSHR
1822	else
1823	tmp_user_catalog=/tmp
1824	fi
1825	fi
1826	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1827
1828
1829	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1830	# BESTIMMEN
1831	if [[ "$tmp_data_catalog" = "" ]]
1832	then
1833	if [[ $localhost = nech ]]
1834	then
1835	tmp_data_catalog=$WRKSHR/mrun_restart_data
1836	else
1837	tmp_data_catalog=/tmp/mrun_restart_data
1838	fi
1839	fi
1840
1841
1842	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1843	# ERSETZEN
1844	if [[ $do_remote = false && $do_compile = true ]]
1845	then
1846	eval fopts=\"$fopts\"
1847	eval lopts=\"$lopts\"
1848	fi
1849
1850
1851
1852	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1853	fopts="$fopts $netcdf_inc $dvr_inc"
1854	lopts="$lopts $netcdf_lib $dvr_lib"
1855	ROPTS="$ropts"
1856	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1857	# then
1858	XOPT="-X $numprocs"
1859	# fi
1860
1861
1862
1863	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1864	# GRAMM BENOETIGT
1865	done=false
1866	while [[ $done = false ]]
1867	do
1868	cputime=$cpumax
1869	if (( $cputime == 0 ))
1870	then
1871	if [[ $do_batch = true ]]
1872	then
1873	printf "\n +++ cpu-time is undefined"
1874	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1875	printf "\n >>> "
1876	read cputime 1>/dev/null 2>&1
1877	else
1878	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1879	fi
1880	else
1881	done=true
1882	fi
1883	cpumax=$cputime
1884	done
1885
1886	(( minuten = cputime / 60 ))
1887	(( sekunden = cputime - minuten * 60 ))
1888
1889
1890	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1891	if [[ $do_batch = true ]]
1892	then
1893	done=false
1894	while [[ $done = false ]]
1895	do
1896	if (( memory == 0 ))
1897	then
1898	printf "\n +++ memory demand is undefined"
1899	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1900	printf "\n >>> "
1901	read memory 1>/dev/null 2>&1
1902	else
1903	done=true
1904	fi
1905	done
1906	fi
1907
1908
1909	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1910	if [[ $do_remote = true && -z $remote_username ]]
1911	then
1912	while [[ -z $remote_username ]]
1913	do
1914	printf "\n +++ username on remote host \"$host\" is undefined"
1915	printf "\n >>> Please type username:"
1916	printf "\n >>> "
1917	read remote_username
1918	done
1919	mc="$mc -u$remote_username"
1920	fi
1921
1922	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1923	if [[ "$login_init_cmd" != "" ]]
1924	then
1925	export init_cmds="${login_init_cmd};"
1926	fi
1927
1928
1929	# set module load command and export for subjob
1930	if [[ "$modules" != "" ]]
1931	then
1932	if [[ $host = lctit ]]
1933	then
1934	export module_calls=". $modules"
1935	else
1936	export module_calls="module load ${modules};"
1937	fi
1938	fi
1939
1940	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1941	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1942	then
1943	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1944	then
1945	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1946	fi
1947	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1948	# then
1949	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1950	# echo "*** module_calls = $module_calls"
1951	# fi
1952	fi
1953
1954
1955	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1956	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1957	then
1958	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1959	then
1960	mpilib=mpt
1961	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1962	then
1963	mpilib=mvapich
1964	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1965	then
1966	mpilib=impi
1967	fi
1968	fi
1969
1970
1971
1972	###########################################################################
1973	# HEADER-AUSGABE
1974	###########################################################################
1975
1976
1977	calltime=$(date)
1978	printf "\n"
1979	# [[ $silent = false ]] && clear
1980	printf "#--------------------------------------------------------------# \n"
1981	printf "\| $version$calltime \| \n"
1982	printf "\| \| \n"
1983	spalte1="called on:"; spalte2=$localhost_realname
1984	printf "\| $spalte1$spalte2 \| \n"
1985	if [[ $local_compile = false ]]
1986	then
1987	if [[ $do_remote = true ]]
1988	then
1989	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1990	else
1991	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1992	fi
1993	else
1994	spalte1="compiling test only!"; spalte2=""
1995	fi
1996	printf "\| $spalte1$spalte2 \| \n"
1997	if [[ -n $numprocs ]]
1998	then
1999	spalte1="number of PEs:"; spalte2=$numprocs
2000	printf "\| $spalte1$spalte2 \| \n"
2001	fi
2002	if [[ -n $tasks_per_node ]]
2003	then
2004	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2005	printf "\| $spalte1$spalte2 \| \n"
2006	fi
2007	if [[ $maximum_parallel_io_streams != $numprocs ]]
2008	then
2009	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2010	printf "\| $spalte1$spalte2 \| \n"
2011	fi
2012	if [[ $use_openmp = true ]]
2013	then
2014	spalte1="threads per task:"; spalte2="$threads_per_task"
2015	printf "\| $spalte1$spalte2 \| \n"
2016	fi
2017	printf "\| \| \n"
2018	if [[ $do_compile = true ]]
2019	then
2020	if [[ "$mopts" != "" ]]
2021	then
2022	spalte1="make options:"; spalte2=$mopts
2023	printf "\| $spalte1$spalte2 \| \n"
2024	zeile=$(echo "$mopts" \| cut -c41-)
2025	while [[ "$zeile" != "" ]]
2026	do
2027	spalte1=""
2028	spalte2=$zeile
2029	printf "\| $spalte1$spalte2 \| \n"
2030	zeile=$(echo "$zeile" \| cut -c41-)
2031	done
2032	fi
2033
2034	spalte1="cpp directives:"; spalte2=$cpp_options
2035	printf "\| $spalte1$spalte2 \| \n"
2036	zeile=$(echo "$cpp_options" \| cut -c41-)
2037	while [[ "$zeile" != "" ]]
2038	do
2039	spalte1=""
2040	spalte2=$zeile
2041	printf "\| $spalte1$spalte2 \| \n"
2042	zeile=$(echo "$zeile" \| cut -c41-)
2043	done
2044
2045	spalte1="compiler options:"; spalte2="$fopts"
2046	printf "\| $spalte1$spalte2 \| \n"
2047	zeile=$(echo "$fopts" \| cut -c41-)
2048	while [[ "$zeile" != "" ]]
2049	do
2050	spalte1=""
2051	spalte2=$zeile
2052	printf "\| $spalte1$spalte2 \| \n"
2053	zeile=$(echo "$zeile" \| cut -c41-)
2054	done
2055
2056	spalte1="linker options:"; spalte2=$lopts
2057	printf "\| $spalte1$spalte2 \| \n"
2058	zeile=$(echo "$lopts" \| cut -c41-)
2059	while [[ "$zeile" != "" ]]
2060	do
2061	spalte1=""
2062	spalte2=$zeile
2063	printf "\| $spalte1$spalte2 \| \n"
2064	zeile=$(echo "$zeile" \| cut -c41-)
2065	done
2066
2067	spalte1="modules to be load:"; spalte2=$modules
2068	printf "\| $spalte1$spalte2 \| \n"
2069	zeile=$(echo "$modules" \| cut -c41-)
2070	while [[ "$zeile" != "" ]]
2071	do
2072	spalte1=""
2073	spalte2=$zeile
2074	printf "\| $spalte1$spalte2 \| \n"
2075	zeile=$(echo "$zeile" \| cut -c41-)
2076	done
2077
2078	spalte1="main program":; spalte2=$mainprog
2079	printf "\| $spalte1$spalte2 \| \n"
2080	else
2081	spalte1=executable:; spalte2=$executable
2082	printf "\| $spalte1$spalte2 \| \n"
2083	fi
2084	printf "\| \| \n"
2085	spalte1="base name of files":; spalte2=$fname
2086	printf "\| $spalte1$spalte2 \| \n"
2087	if [[ $fname != $afname ]]
2088	then
2089	spalte1="base name of input files":; spalte2=$afname
2090	printf "\| $spalte1$spalte2 \| \n"
2091	fi
2092	spalte1="INPUT control list":; spalte2=$input_list
2093	printf "\| $spalte1$spalte2 \| \n"
2094	spalte1="OUTPUT control list":; spalte2=$output_list
2095	printf "\| $spalte1$spalte2 \| \n"
2096
2097	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2098	then
2099	spalte1="memory demand / PE":; spalte2="$memory MB"
2100	printf "\| $spalte1$spalte2 \| \n"
2101	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2102	printf "\| $spalte1$spalte2 \| \n"
2103	fi
2104
2105	if [[ $do_compile = true ]]
2106	then
2107	printf "\| \| \n"
2108	printf "\| Files to be compiled: \| \n"
2109	zeile=$source_list
2110	while [[ "$zeile" != "" ]]
2111	do
2112	spalte3=$zeile
2113	printf "\| $spalte3 \| \n"
2114	zeile=$(echo "$zeile" \| cut -c61-)
2115	done
2116	fi
2117	printf "#--------------------------------------------------------------#"
2118
2119
2120
2121	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2122	if [[ $do_trace = true ]]
2123	then
2124	(( i = 0 ))
2125	while (( i < iin ))
2126	do
2127	(( i = i + 1 ))
2128	if (( i == 1 ))
2129	then
2130	printf "\n\n >>> INPUT-file assignments:\n"
2131	fi
2132	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2133	done
2134	(( i = 0 ))
2135	while (( i < iout ))
2136	do
2137	(( i = i + 1 ))
2138	if (( i == 1 ))
2139	then
2140	printf "\n\n >>> OUTPUT-file assignments:\n"
2141	fi
2142	printf "\n ${localout[$i]} : ${pathout[$i]}"
2143	done
2144	(( i = 0 ))
2145	while (( i < iic ))
2146	do
2147	(( i = i + 1 ))
2148	if (( i == 1 ))
2149	then
2150	printf "\n\n >>> INPUT-commands:\n"
2151	fi
2152	printf "\n ${in_command[$i]}"
2153	done
2154	(( i = 0 ))
2155	while (( i < ioc ))
2156	do
2157	(( i = i + 1 ))
2158	if (( i == 1 ))
2159	then
2160	printf "\n\n >>> OUTPUT-commands:\n"
2161	fi
2162	printf "\n ${out_command[$i]}"
2163	done
2164	fi
2165
2166
2167	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2168	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2169	then
2170	antwort=dummy
2171	printf "\n\n"
2172	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2173	do
2174	printf " >>> everything o.k. (y/n) ? "
2175	read antwort
2176	done
2177	if [[ $antwort = n \|\| $antwort = N ]]
2178	then
2179	locat=user_abort; (( iec = 0 )); exit
2180	fi
2181	if [[ $do_batch = true ]]
2182	then
2183	printf " >>> batch-job will be created and submitted"
2184	else
2185	if [[ $local_compile = false ]]
2186	then
2187	printf " >>> MRUN will now continue to execute on this machine"
2188	else
2189	printf " >>> a test compilation will now be carried out on this machine"
2190	fi
2191	fi
2192	fi
2193
2194	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2195
2196	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2197	check_depository="${working_directory}/trunk/UTIL"
2198	check_sources="${working_directory}/tmp_check_namelist_files"
2199	skip_check=false
2200
2201	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2202	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2203	then
2204	skip_check=true
2205	reason="run on remote host or parameter file check has not been compiled."
2206	fi
2207	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2208	then
2209	skip_check=true
2210	reason="parameter file check has not been compiled."
2211	fi
2212
2213	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2214	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2215	then
2216	skip_check=true
2217	reason="serial run."
2218	fi
2219
2220	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2221	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2222	if [[ $check_namelist_files == false ]]
2223	then
2224	skip_check=true
2225	reason="-z option set."
2226	fi
2227
2228	if [[ $fromhost != $localhost ]]
2229	then
2230	skip_check=true
2231	reason="submitting host is local host."
2232	fi
2233
2234	if [[ $run_coupled_model == true ]]
2235	then
2236	skip_check=true
2237	reason="coupled run."
2238	fi
2239
2240	if [[ $restart_run == true ]]
2241	then
2242	skip_check=true
2243	reason="restart run."
2244
2245	fi
2246
2247	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2248	((last_char = `echo $filename_input \| wc -c` - 1))
2249	last_char=`echo $filename_input \|cut -c$last_char`
2250	if [[ "$last_char" == "f" ]]
2251	then
2252	skip_check=true
2253	reason="restart run."
2254	fi
2255
2256	if [[ $skip_check == false ]]
2257	then
2258
2259	tmp_check=${working_directory}/tmp_check
2260
2261	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2262	# NOT NECESSARILY REQUIRED
2263	line=""
2264	found=false
2265	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2266	while read line1
2267	do
2268	line="$line1"
2269	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2270	then
2271	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2272	found=true
2273	fi
2274	done < $tmp_check
2275
2276	if [[ $found = false ]]
2277	then
2278	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2279	fi
2280
2281	rm -rf ${working_directory}/tmp_check
2282
2283	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2284	for item in $input_list
2285	do
2286	if [[ "$item" == "restart" ]]
2287	then
2288	check_restart=1
2289	else
2290	check_restart=0
2291	fi
2292	done
2293
2294	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2295	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2296	then
2297	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2298	locat=check_namelist; exit
2299	fi
2300
2301	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2302	if [[ $check_restart == 1 ]]
2303	then
2304
2305
2306
2307	filenamef="${filename_input}f"
2308	if [[ ! -f $filenamef ]]
2309	then
2310	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2311	check_restart=0
2312	answer=dummy
2313	printf "\n\n"
2314
2315	if [[ $silent == false ]]
2316	then
2317	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2318	do
2319	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2320	read answer
2321	done
2322	if [[ $answer = a \|\| $answer = A ]]
2323	then
2324	printf "\n +++ Aborting...."
2325	locat=normal; exit
2326	fi
2327	fi
2328	else
2329	check_restart=1
2330	fi
2331	fi
2332
2333	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2334	mkdir $check_sources
2335	cd $check_sources
2336
2337
2338	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2339	if [[ -d $add_source_path ]]
2340	then
2341	printf "\n\n *** copying files from $check_depository"
2342	cp $check_depository/check_namelist_files.tar ./
2343
2344	printf "\n\n *** untar of makefile and source files in $check_sources"
2345	tar -xf check_namelist_files.tar > /dev/null 2>&1
2346
2347	printf "\n\n *** adding user code."
2348	cp $add_source_path/* ./
2349	touch check_namelist_files.f90
2350
2351	# GET COMPILER OPTIONS AND PERFORM MAKE
2352	printf "\n\n *** compiling code if necessary...\n"
2353
2354	# workaround for batch jobs on local machine (lcxe6)
2355	if [[ $do_batch == true && $do_remote == false ]]
2356	then
2357	eval $init_cmds
2358	fi
2359
2360	# GET CHECK OPTIONS
2361	line=""
2362	found=false
2363
2364	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2365
2366	while read line1
2367	do
2368
2369	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2370	then
2371	line="$line1"
2372	fi
2373
2374	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2375	then
2376	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2377	line="$line "
2378	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2379	found=true
2380	fi
2381
2382	done < $tmp_check
2383	copts_check="$copts_check -D__check -D__parallel"
2384
2385	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2386
2387	# GET MAKE OUTPUT
2388	if [[ $? != 0 ]]
2389	then
2390	printf "\n +++ error during make."
2391	answer=dummy
2392	printf "\n\n"
2393	if [[ $silent == false ]]
2394	then
2395	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2396	do
2397	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2398	read answer
2399	done
2400	if [[ $answer = a \|\| $answer = A ]]
2401	then
2402	printf "\n +++ Aborting..."
2403	rm -rf $check_sources
2404	locat=normal; exit
2405	else
2406	skip_check=true
2407	fi
2408	else
2409	skip_check=true
2410	fi
2411	fi
2412	else
2413	cp $PALM_BIN/check_namelist_files.x ./
2414	fi
2415
2416	cp $filename_input ./PARIN
2417	if [[ $check_restart == 1 ]]
2418	then
2419	cp $filenamef ./PARINF
2420	fi
2421
2422	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2423	then
2424	printf "\n *** adding topography data"
2425	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2426
2427	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2428	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2429	# WHICH REQUIRE SUFFICIENT MEMORY
2430	ulimit -s unlimited
2431	fi
2432
2433	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2434	cat > ENVPAR << %%END%%
2435	&envpar run_identifier = '$fname', host = '$host',
2436	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2437	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2438	maximum_cpu_time_allowed = ${cpumax}.,
2439	revision = '$global_revision',
2440	local_dvrserver_running = $local_dvrserver_running /
2441
2442	%%END%%
2443
2444	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2445	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2446	printf "\n +++ WARNING: check_namelist_files.x not found."
2447	answer=dummy
2448	printf "\n\n"
2449
2450	if [[ $silent == false ]]
2451	then
2452	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2453	do
2454	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2455	read answer
2456	done
2457	if [[ $answer = a \|\| $answer = A ]]
2458	then
2459	printf "\n +++ Aborting..."
2460	rm -rf $check_sources
2461	locat=normal; exit
2462	else
2463	printf "\n *** skipping parameter file check."
2464
2465	fi
2466	fi
2467
2468	elif [[ $skip_check == false ]]
2469	then
2470	# STARTING THE PARAMETER FILE CHECK
2471	printf "\n\n *** starting parameter file check..."
2472
2473	# CHECKING THE P3D FILE
2474	printf "\n\n (1) checking $filename_input"
2475	echo "$numprocs 0 0" > VARIN
2476	errors=`./check_namelist_files.x < VARIN 2>&1`
2477
2478	check_error=false
2479	if [[ "$errors" == "" ]]
2480	then
2481	printf " --> o.k."
2482	else
2483	printf " --> failed."
2484	check_error=true
2485	printf "\n\n $errors"
2486	fi
2487
2488	# CHECKING THE PD3F FILE IF NECESSARY
2489	if [[ $check_restart == 1 && $check_error == false ]]
2490	then
2491	printf "\n\n (2) checking $filenamef"
2492
2493	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2494	found=false
2495	cat PARINF\|while read line
2496	do
2497	line=$(echo $line\|sed 's/ //g')
2498	if [[ $line == "&inipar" ]]
2499	then
2500	start_search=true
2501	fi
2502
2503	if [[ $start_search == true ]]
2504	then
2505	if [[ $line == "initializing_actions='read_restart_data'" ]]
2506	then
2507	found=true
2508	break
2509	fi
2510	fi
2511
2512	if [[ $line == "/" ]]
2513	then
2514	start_search=false
2515	fi
2516
2517	done
2518
2519	if [[ $found = false ]]
2520	then
2521	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2522	printf "\n in &inipar list in $fname$p3df_suffix."
2523	rm -rf $check_sources
2524	locat=check_namelist; exit
2525	fi
2526
2527	# READ max_user_pr FROM FILES
2528	if [[ -f parin_for_check ]]
2529	then
2530	read max_pr_user < parin_for_check
2531	else
2532	max_user_pr=0
2533	fi
2534
2535	echo "$numprocs 1 $max_pr_user" > VARIN
2536	errors=`./check_namelist_files.x < VARIN 2>&1`
2537
2538	if [[ "$errors" == "" ]]
2539	then
2540	printf " --> o.k."
2541	else
2542	printf " --> failed."
2543	check_error=true
2544	printf "\n\n $errors"
2545	fi
2546	fi
2547
2548	# REPORT ERRORS AND CONTINUE/EXIT
2549	if [[ $check_error == true ]]
2550	then
2551	printf "\n +++ errors found in the parameter file!\n"
2552	answer=dummy
2553	printf "\n\n"
2554
2555	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2556	do
2557	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2558	read answer
2559	done
2560
2561	if [[ $answer = a \|\| $answer = A ]]
2562	then
2563	printf "\n +++ Aborting..."
2564	rm -rf $check_sources
2565	locat=normal; exit
2566	fi
2567	else
2568	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2569	fi
2570	rm -rf $check_sources
2571	fi
2572	else
2573	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2574	fi
2575
2576	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2577	rm -rf $check_sources
2578	cd $working_directory
2579
2580
2581	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2582	# CHENDE AKTIONEN DURCHGEFUEHRT
2583	if [[ $do_batch = false ]]
2584	then
2585
2586
2587	# TEMPORAEREN KATALOG ERZEUGEN
2588	mkdir -p $TEMPDIR
2589	chmod go+rx $TEMPDIR
2590	tmpcreate=true
2591
2592	# set striping on lustre file system
2593	# if [[ $localhost = lcsgih ]]
2594	# then
2595	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2596	# lfs getstripe $TEMPDIR
2597	# fi
2598
2599
2600	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2601	# TEMPORAERES VERZEICHNIS KOPIEREN
2602	if [[ $do_compile = true ]]
2603	then
2604
2605	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2606	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2607	if [[ $localhost = nech ]]
2608	then
2609	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2610	if mkdir -p $TEMPDIR_COMPILE
2611	then
2612	printf "\n *** \"$TEMPDIR_COMPILE\" "
2613	printf "\n is generated as temporary directory for cross compiling\n"
2614	else
2615	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2616	printf "\n needed for cross compilation failed"
2617	locat=compile
2618	exit
2619	fi
2620	else
2621	TEMPDIR_COMPILE=$TEMPDIR
2622	fi
2623
2624
2625	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2626	line=""
2627	grep "%depository_path" $config_file > tmp_mrun
2628	while read line
2629	do
2630	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2631	then
2632	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2633	then
2634	global_depository_path=`echo $line \| cut -d" " -s -f2`
2635	fi
2636	fi
2637	done < tmp_mrun
2638
2639	line=""
2640	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2641	while read line
2642	do
2643	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2644	then
2645	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2646	then
2647	local_depository_path=`echo $line \| cut -d" " -s -f2`
2648	fi
2649	fi
2650	done < tmp_mrun
2651
2652	if [[ "$local_depository_path" = "" ]]
2653	then
2654	if [[ "$global_depository_path" != "" ]]
2655	then
2656	local_depository_path=$global_depository_path
2657	else
2658	printf "\n\n +++ no depository path found in configuration file"
2659	printf "\n for local host \"$localhost\" "
2660	printf "\n please set \"\%depository_path\" in configuration file\n"
2661	locat=config_file; exit
2662	fi
2663	fi
2664	eval local_depository_path=$local_depository_path
2665	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2666	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2667
2668
2669	basename=`print $mainprog \| cut -f1 -d"."`
2670	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2671	if [[ ! -f $make_depository ]]
2672	then
2673	printf "\n"
2674	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2675	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2676	else
2677	cp $make_depository $TEMPDIR_COMPILE
2678	cd $TEMPDIR_COMPILE
2679	tar -xf $make_depository > /dev/null 2>&1
2680	cd - > /dev/null
2681	fi
2682
2683	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2684
2685	else
2686
2687	cp $executable ${TEMPDIR}/a.out
2688
2689	fi
2690
2691
2692	# WECHSEL IN TEMPORAEREN KATALOG
2693	cd $TEMPDIR
2694	printf "\n *** changed to temporary directory: $TEMPDIR"
2695
2696
2697	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2698	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2699	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2700	# ERMITTELN
2701	(( i = 0 ))
2702	while (( i < iout ))
2703	do
2704	(( i = i + 1 ))
2705	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2706	then
2707	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2708	else
2709	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2710	fi
2711	done
2712
2713
2714	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2715	if [[ $do_compile = true ]]
2716	then
2717
2718
2719	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2720	printf "\n\n\n *** compilation starts \n$striche\n"
2721	printf " *** compilation with make using following options:\n"
2722	printf " make depository: $make_depository"
2723	if [[ "$mopts" != "" ]]
2724	then
2725	printf " make options: $mopts\n"
2726	fi
2727	printf " compilername: $compiler_name\n"
2728	printf " compiler options: $fopts\n"
2729	printf " preprocessor directives: $cpp_options \n"
2730	printf " linker options: $lopts \n"
2731	if [[ "$modules" != "" ]]
2732	then
2733	printf " modules to be load: $modules \n"
2734	fi
2735	printf " source code files: $source_list \n"
2736
2737	if [[ $localhost = nech ]]
2738	then
2739	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2740	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2741	cp $TEMPDIR_COMPILE/a.out .
2742	[[ $? != 0 ]] && compile_error=true
2743	rm -rf $TEMPDIR_COMPILE
2744	elif [[ $localhost = ibmh ]]
2745	then
2746	printf " compiler is called via ssh on \"plogin1\" \n"
2747	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2748	[[ ! -f a.out ]] && compile_error=true
2749	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2750	elif [[ $localhost = lcsgib ]]
2751	then
2752	printf " compiler is called via ssh on \"bicegate0\" \n"
2753	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2754	[[ ! -f a.out ]] && compile_error=true
2755	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2756	elif [[ $localhost = lcsgih ]]
2757	then
2758	printf " compiler is called via ssh on \"hicegate0\" \n"
2759	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2760	[[ ! -f a.out ]] && compile_error=true
2761	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2762	elif [[ $localhost = lcflow ]]
2763	then
2764	printf " compiler is called via ssh on \"flow\" \n"
2765	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2766	[[ ! -f a.out ]] && compile_error=true
2767	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2768	else
2769	[[ "$init_cmds" != "" ]] && eval $init_cmds
2770	[[ "$module_calls" != "" ]] && eval $module_calls
2771	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2772
2773	fi
2774
2775	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2776	then
2777	printf "\n +++ error occured while compiling or linking"
2778	locat=compile
2779
2780	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2781	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2782	# then
2783	exit
2784	# else
2785	# locat=normal
2786	# fi
2787	else
2788	printf "$striche\n *** compilation finished \n"
2789	fi
2790	fi
2791
2792
2793	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2794	if [[ $local_compile = true ]]
2795	then
2796	cd $HOME
2797	rm -rf $TEMPDIR
2798	locat=local_compile; exit
2799	fi
2800
2801
2802	# BEREITSTELLEN DER INPUT-DATEIEN
2803	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2804	(( i = 0 ))
2805	while (( i < iin ))
2806	do
2807	(( i = i + 1 ))
2808	if (( i == 1 ))
2809	then
2810	printf "\n\n *** providing INPUT-files:\n$striche"
2811	fi
2812
2813
2814	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2815	if [[ "${transin[$i]}" = unavailable ]]
2816	then
2817	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2818	then
2819	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2820	printf "\n is not available!"
2821	else
2822	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2823	printf "\n is not available!"
2824	fi
2825	continue
2826	fi
2827
2828	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2829	files_for_pes=false; datentyp=file
2830	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2831	then
2832	files_for_pes=true; datentyp=directory
2833	actionin[$i]=""
2834	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2835	then
2836	actionin[$i]=""
2837	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2838	then
2839	files_for_pes=true; datentyp=directory
2840	actionin[$i]="ar"
2841	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2842	then
2843	actionin[$i]="ar"
2844	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2845	then
2846	files_for_pes=true; datentyp=directory
2847	actionin[$i]="fl"
2848	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2849	then
2850	actionin[$i]="fl"
2851	fi
2852
2853	if [[ $files_for_pes = true ]]
2854	then
2855	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2856	else
2857	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2858	fi
2859
2860	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2861	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2862	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2863	# SERVER ZU HOLEN
2864	if [[ "${actionin[$i]}" = fl ]]
2865	then
2866	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2867	if [[ $files_for_pes = false ]]
2868	then
2869	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2870	then
2871	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2872	got_tmp[$i]=true
2873	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2874	then
2875	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2876	printf "\n *** trying to use backup copy in \"$WORK\" "
2877	cp $WORK/${frelin[$i]} ${localin[$i]}
2878	else
2879	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2880	printf "\n or \"$tmp_data_catalog\" does not exist!"
2881	printf "\n *** trying to get copy from archive"
2882	actionin[$i]=ar
2883	fi
2884	else
2885	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2886	then
2887	mkdir ${localin[$i]}
2888	cd $tmp_data_catalog/${frelin[$i]}
2889	for file in $(ls *)
2890	do
2891	ln $file $TEMPDIR/${localin[$i]}
2892	done
2893	cd $TEMPDIR
2894	got_tmp[$i]=true
2895	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2896	then
2897	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2898	printf "\n *** trying to use backup copy in \"$WORK\" "
2899	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2900	else
2901	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2902	printf "\n or \"$tmp_data_catalog\" does not exist!"
2903	printf "\n *** trying to get copy from archive"
2904	actionin[$i]=ar
2905	fi
2906	fi
2907	fi
2908
2909
2910	# DATEI LIEGT AUF ARCHIV-SERVER
2911	if [[ "${actionin[$i]}" = ar ]]
2912	then
2913
2914	if [[ $files_for_pes = false ]]
2915	then
2916	printf "\n file will be restored from archive-system ($archive_system)!"
2917	else
2918	printf "\n directory will be restored from archive-system ($archive_system)!"
2919	fi
2920
2921	file_restored=false
2922
2923	if [[ $archive_system = asterix ]]
2924	then
2925	do_stagein=true
2926	(( stagein_anz = 0 ))
2927	while [[ $do_stagein = true ]]
2928	do
2929	if [[ $files_for_pes = false ]]
2930	then
2931	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2932	else
2933	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2934	fi
2935	cat STAGEIN_OUTPUT
2936	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2937	then
2938	file_restored=true
2939	do_stagein=false
2940	else
2941	(( stagein_anz = stagein_anz + 1 ))
2942	if (( stagein_anz == 10 ))
2943	then
2944	printf "\n +++ stagein stoped after 10 tries"
2945	locat=stage
2946	exit
2947	fi
2948	printf "\n +++ restoring from archive failed, trying again:"
2949	sleep 900
2950	fi
2951	done
2952	elif [[ $archive_system = DMF ]]
2953	then
2954	if [[ $files_for_pes = false ]]
2955	then
2956	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2957	locat=DMF
2958	exit
2959	else
2960	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2961	cp -r $ARCHIVE/${frelin[$i]} $PWD
2962	file_restored=true
2963	fi
2964	elif [[ $archive_system = tivoli ]]
2965	then
2966	if [[ $files_for_pes = false ]]
2967	then
2968	if [[ $localhost = lcsgih ]]
2969	then
2970	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2971	else
2972	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2973	fi
2974	else
2975	(( inode = 0 ))
2976	while (( inode < nodes ))
2977	do
2978	if [[ $localhost = lcsgih ]]
2979	then
2980	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2981	else
2982	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2983	fi
2984	(( inode = inode + 1 ))
2985	done
2986	fi
2987	file_restored=true
2988	elif [[ $archive_system = ut ]]
2989	then
2990	if [[ $files_for_pes = false ]]
2991	then
2992	cp $UT/${frelin[$i]} .
2993	else
2994	(( inode = 0 ))
2995	while (( inode < nodes ))
2996	do
2997	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2998	(( inode = inode + 1 ))
2999	done
3000	fi
3001	file_restored=true
3002	else
3003	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3004	locat=rearchive
3005	exit
3006	fi
3007
3008	if [[ $file_restored = true ]]
3009	then
3010
3011	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3012	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3013	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3014	if [[ $files_for_pes = false ]]
3015	then
3016	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3017	else
3018	mkdir $tmp_data_catalog/${frelin[$i]}
3019	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3020	fi
3021	got_tmp[$i]=true
3022
3023	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3024	mv ${frelin[$i]} ${localin[$i]}
3025
3026	fi
3027	fi
3028
3029
3030	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3031	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3032	then
3033
3034	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3035	then
3036
3037	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3038	printf "\n file will be provided for $numprocs processors"
3039	mkdir ${localin[$i]}
3040	ival=$numprocs
3041	(( ii = 0 ))
3042	while (( ii <= ival-1 ))
3043	do
3044	if (( ii < 10 ))
3045	then
3046	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3047	elif (( ii < 100 ))
3048	then
3049	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3050	elif (( ii < 1000 ))
3051	then
3052	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3053	else
3054	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3055	fi
3056	(( ii = ii + 1 ))
3057	done
3058
3059	else
3060
3061	if [[ $files_for_pes = true ]]
3062	then
3063
3064	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3065	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3066	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3067	# PER MOVE UMBENANNT WERDEN
3068	printf "\n providing $numprocs files for the respective processors"
3069	mkdir ${localin[$i]}
3070	if [[ $link_local_input = true ]]
3071	then
3072	printf " using ln -f\n"
3073	cd ${absnamein[$i]}
3074	for file in $(ls *)
3075	do
3076	ln -f $file ${localin[$i]}
3077	done
3078	cd $TEMPDIR
3079	fi
3080	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3081	if [[ ! -f "${localin[$i]}/_0000" ]]
3082	then
3083	if [[ $link_local_input = true ]]
3084	then
3085	printf " ln failed for .../_0000, using cp...\n"
3086	fi
3087	cp -r ${absnamein[$i]}/* ${localin[$i]}
3088	fi
3089
3090	else
3091	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3092	if [[ $link_local_input = true ]]
3093	then
3094	printf " using ln -f\n"
3095	ln -f ${absnamein[$i]} ${localin[$i]}
3096	fi
3097	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3098	if [[ ! -f "${localin[$i]}" ]]
3099	then
3100	if [[ $link_local_input = true ]]
3101	then
3102	printf " ln failed, using cp...\n"
3103	fi
3104	cp ${absnamein[$i]} ${localin[$i]}
3105	fi
3106	fi
3107	fi
3108	fi
3109
3110	done
3111	if (( i != 0 ))
3112	then
3113	printf "\n$striche\n *** all INPUT-files provided \n"
3114	fi
3115
3116
3117	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3118	(( i = 0 ))
3119	while (( i < iic ))
3120	do
3121	(( i = i + 1 ))
3122	if (( i == 1 ))
3123	then
3124	printf "\n\n *** execution of INPUT-commands:\n$striche"
3125	fi
3126	printf "\n >>> ${in_command[$i]}"
3127	eval ${in_command[$i]}
3128	if (( i == iic ))
3129	then
3130	printf "\n$striche\n"
3131	fi
3132	done
3133
3134
3135	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3136	cpurest=${cpumax}.
3137
3138
3139	# START DVR STREAMING SERVER
3140	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3141	then
3142	if [[ "$dvr_server" != "" ]]
3143	then
3144
3145	printf "\n\n *** preparing the dvr streaming server configuration file"
3146
3147	# Check, if a dvr server is already running
3148	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3149	if [[ "$running_dvrserver_id" != "" ]]
3150	then
3151
3152	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3153	printf "\n This server is used instead starting a new one!"
3154	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3155
3156	else
3157
3158	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3159	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3160	then
3161	cp ${PALM_BIN}/.dvrserver.config .
3162
3163	# Entering the BASEDIR, UID and GID into this file
3164	user_id=`id -u`
3165	group_id=`id -g`
3166	# & is needed as seperator, because TEMPDIR contains /
3167	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3168	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3169	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3170	mv .dvrserver.3 .dvrserver.config
3171	rm .dvrserver.1 .dvrserver.2
3172
3173	# Start dvr server in background, get his id and print on terminal
3174	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3175	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3176	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3177	local_dvrserver_running=.TRUE.
3178	else
3179	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3180	printf "\n \"$PALM_BIN\" "
3181	locat=dvr
3182	exit
3183	fi
3184
3185	fi
3186
3187	else
3188	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3189	fi
3190	fi
3191
3192
3193	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3194	# LESEN VON PALM)
3195	cat > ENVPAR << %%END%%
3196	&envpar run_identifier = '$fname', host = '$localhost',
3197	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3198	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3199	maximum_cpu_time_allowed = ${cpumax}.,
3200	revision = '$global_revision',
3201	local_dvrserver_running = $local_dvrserver_running /
3202
3203	%%END%%
3204
3205
3206	# PROGRAMMSTART
3207	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3208	PATH=$PATH:$TEMPDIR
3209
3210	# MPI debug option (argument checking, slows down execution due to increased latency)
3211	if [[ "$mpi_debug" = true ]]
3212	then
3213	export MPI_CHECK_ARGS=1
3214	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3215	fi
3216
3217	if [[ "$totalview" = true ]]
3218	then
3219	printf "\n *** totalview debugger will be used"
3220	tv_opt="-tv"
3221	else
3222	tv_opt=""
3223	fi
3224
3225	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3226	then
3227	if [[ "$ENVIRONMENT" = BATCH ]]
3228	then
3229	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3230	then
3231	printf "\n +++ debug is allowed in interactive mode only"
3232	locat=debug
3233	exit
3234	fi
3235	fi
3236	if [[ $localhost = decalpha ]]
3237	then
3238	dxladebug a.out
3239	elif [[ $localhost = ibmh ]]
3240	then
3241
3242	# SETUP THE IBM MPI ENVIRONMENT
3243	export MP_SHARED_MEMORY=yes
3244	export AIXTHREADS_SCOPE=S
3245	export OMP_NUM_THREADS=$threads_per_task
3246	export AUTHSTATE=files
3247	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3248
3249	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3250	export MP_ADAPTER_USE=shared
3251	export MP_CPU_USE=multiple
3252	export MP_TIMEOUT=1200
3253
3254	unset MP_TASK_AFFINITY
3255
3256	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3257	#(( ii = 1 ))
3258	#while (( ii <= $numprocs ))
3259	#do
3260	# echo $localhost_realname >> hostfile
3261	# (( ii = ii + 1 ))
3262	#done
3263	#export MP_HOSTFILE=hostfile
3264
3265	if [[ "$LOADLBATCH" = yes ]]
3266	then
3267	totalview poe a.out $ROPTS
3268	else
3269	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3270	export TVDSVRLAUNCHCMD=ssh
3271	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3272	fi
3273	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3274	then
3275	# CURRENTLY NO DEBUGGER ON LCSGI
3276	if [[ $run_coupled_model = true ]]
3277	then
3278	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3279	locat=debug
3280	exit
3281	else
3282	echo "no_coupling" > runfile_atmos
3283	fi
3284	(( ii = $numprocs / $threads_per_task ))
3285	export OMP_NUM_THREADS=$threads_per_task
3286	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3287	if [[ $threads_per_task != 1 ]]
3288	then
3289	printf "\n threads per task: $threads_per_task"
3290	fi
3291	printf "\n\n"
3292	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3293	then
3294	# export MPI_LAUNCH_TIMEOUT=360
3295	if [[ "$totalview" = true ]]
3296	then
3297	printf "\n running totalview debugger"
3298	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3299	else
3300	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3301	fi
3302	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3303	then
3304	# ulimit -s 300000 # A too large stack size causes problems
3305	# export MV2_NUM_PORTS=2
3306	# export MV2_CPU_MAPPING=0:1:2:3
3307	if [[ "$totalview" = true ]]
3308	then
3309	printf "\n running totalview debugger"
3310	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3311	else
3312	mpiexec ./a.out $ROPTS < runfile_atmos
3313	fi
3314	fi
3315	else
3316	printf "\n +++ no debug available on \"$localhost\" "
3317	printf "\n or not implemented in mrun so far"
3318	locat=debug
3319	exit
3320	fi
3321
3322	# end debug mode
3323	else
3324
3325	# normal execution
3326	if [[ -n $numprocs ]]
3327	then
3328	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3329	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3330	then
3331	# SETUP THE IBM MPI ENVIRONMENT
3332	if [[ $host != ibmh && $host != ibmkisti ]]
3333	then
3334	export MP_SHARED_MEMORY=yes
3335	export AIXTHREAD_SCOPE=S
3336	export OMP_NUM_THREADS=$threads_per_task
3337	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3338	export AUTHSTATE=files
3339	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3340	# export MP_PRINTENV=yes
3341
3342	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3343	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3344	export MP_WAIT_MODE=poll
3345	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3346	fi
3347
3348	if [[ $host = ibmkisti ]]
3349	then
3350	export LANG=en_US
3351	export MP_SHARED_MEMORY=yes
3352	if [[ $threads_per_task = 1 ]]
3353	then
3354	export MP_SINGLE_THREAD=yes
3355	export MEMORY_AFFINITY=MCM
3356	else
3357	export OMP_NUM_THREADS=$threads_per_task
3358	fi
3359	fi
3360
3361	if [[ "$LOADLBATCH" = yes ]]
3362	then
3363	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3364	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3365	then
3366	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3367	else
3368	if [[ $run_coupled_model = false ]]
3369	then
3370	if [[ "$ocean_file_appendix" = true ]]
3371	then
3372	echo "precursor_ocean" > runfile_atmos
3373	else
3374	echo "precursor_atmos" > runfile_atmos
3375	fi
3376	else
3377	(( iia = $numprocs_atmos / $threads_per_task ))
3378	(( iio = $numprocs_ocean / $threads_per_task ))
3379	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3380	printf "\n using $coupled_mode coupling"
3381	printf "\n\n"
3382	echo "coupled_run $iia $iio" > runfile_atmos
3383	fi
3384	poe ./a.out $ROPTS < runfile_atmos
3385	fi
3386	else
3387	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3388	then
3389	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3390	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3391	then
3392	if [[ -f $hostfile ]]
3393	then
3394	cp $hostfile hostfile
3395	else
3396	(( ii = 1 ))
3397	while (( ii <= $numprocs ))
3398	do
3399	echo $localhost_realname >> hostfile
3400	(( ii = ii + 1 ))
3401	done
3402	fi
3403	export MP_HOSTFILE=hostfile
3404	if [[ $run_coupled_model = false ]]
3405	then
3406	if [[ "$ocean_file_appendix" = true ]]
3407	then
3408	echo "precursor_ocean" > runfile_atmos
3409	else
3410	echo "precursor_atmos" > runfile_atmos
3411	fi
3412	else
3413	(( iia = $numprocs_atmos / $threads_per_task ))
3414	(( iio = $numprocs_ocean / $threads_per_task ))
3415	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3416	printf "\n using $coupled_mode coupling"
3417	printf "\n\n"
3418	echo "coupled_run $iia $iio" > runfile_atmos
3419	fi
3420	if [[ $localhost = ibmy ]]
3421	then
3422	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3423	else
3424	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3425	fi
3426
3427	else
3428	if [[ "$host_file" = "" ]]
3429	then
3430	printf "\n +++ no hostfile given in configuration file"
3431	locat=config_file
3432	exit
3433	else
3434	eval host_file=$host_file
3435	fi
3436	export MP_HOSTFILE=$host_file
3437	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3438	fi
3439	fi
3440	elif [[ $host = nech \|\| $host = necriam ]]
3441	then
3442	(( ii = nodes ))
3443	if [[ $ii = 1 ]]
3444	then
3445	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3446	export MPIPROGINF=YES
3447	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3448	echo "*** execution on single node with mpirun"
3449	mpirun -np $numprocs ./a.out $ROPTS
3450	else
3451	(( i = 0 ))
3452	while (( i < ii ))
3453	do
3454	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3455	(( i = i + 1 ))
3456	done
3457
3458	echo "#!/bin/sh" > mpi_exec_shell
3459	echo " " >> mpi_exec_shell
3460	echo "set -u" >> mpi_exec_shell
3461	echo "F_ERRCNT=0" >> mpi_exec_shell
3462	echo "MPIPROGINV=YES" >> mpi_exec_shell
3463	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3464	echo "cpurest=$cpurest" >> mpi_exec_shell
3465	echo "fname=$fname" >> mpi_exec_shell
3466	echo "localhost=$localhost" >> mpi_exec_shell
3467	echo "return_addres=$return_addres" >> mpi_exec_shell
3468	echo "return_username=$return_username" >> mpi_exec_shell
3469	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3470	echo "write_binary=$write_binary" >> mpi_exec_shell
3471	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3472	echo " " >> mpi_exec_shell
3473	echo "export F_ERRCNT" >> mpi_exec_shell
3474	echo "export MPIPROGINV" >> mpi_exec_shell
3475	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3476	echo "export cpurest" >> mpi_exec_shell
3477	echo "export fname" >> mpi_exec_shell
3478	echo "export localhost" >> mpi_exec_shell
3479	echo "export return_addres" >> mpi_exec_shell
3480	echo "export return_username" >> mpi_exec_shell
3481	echo "export tasks_per_node" >> mpi_exec_shell
3482	echo "export write_binary" >> mpi_exec_shell
3483	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3484	echo " " >> mpi_exec_shell
3485	echo "exec ./a.out" >> mpi_exec_shell
3486
3487	chmod u+x mpi_exec_shell
3488	export MPIPROGINF=YES
3489	mpirun -f multinode_config &
3490	wait
3491
3492	fi
3493	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3494	then
3495
3496	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3497	# DOES NOT EXIST
3498	if [[ $host != lcsgih && $host != lcsgib ]]
3499	then
3500	if [[ -f $hostfile ]]
3501	then
3502	cp $hostfile hostfile
3503	(( ii = $numprocs / $threads_per_task ))
3504	else
3505	(( ii = 1 ))
3506	while (( ii <= $numprocs / $threads_per_task ))
3507	do
3508	echo $localhost_realname >> hostfile
3509	(( ii = ii + 1 ))
3510	done
3511	fi
3512	eval zeile=\"`head -n $ii hostfile`\"
3513	printf "\n *** running on: $zeile"
3514	fi
3515
3516	(( ii = $numprocs / $threads_per_task ))
3517	export OMP_NUM_THREADS=$threads_per_task
3518	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3519	if [[ $threads_per_task != 1 ]]
3520	then
3521	# increase stack size to unlimited, because large runs
3522	# may abort otherwise
3523	ulimit -Ss unlimited
3524	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3525	fi
3526	if [[ $run_coupled_model = false ]]
3527	then
3528	if [[ "$ocean_file_appendix" = true ]]
3529	then
3530	echo "precursor_ocean" > runfile_atmos
3531	else
3532	echo "precursor_atmos" > runfile_atmos
3533	fi
3534	printf "\n\n"
3535	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3536	then
3537	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3538	then
3539	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3540	# export MPI_DSM_DISTRIBUTE=1
3541	# MPI_DSM_CPULIST: pin MPI processes to cores
3542	if [[ $use_openmp = false ]]
3543	then
3544	if [[ "$sgi_feature" = ice2 ]]
3545	then
3546	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3547	else
3548	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3549	fi
3550	else
3551	unset MPI_DSM_CPULIST
3552	fi
3553	# MPI_IB_RAILS: use both IB rails on ICE2
3554	export MPI_BUFS_PER_HOST=512
3555	export MPI_IB_RAILS=2
3556	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3557	export MPI_CONNECTIONS_THRESHOLD=8192
3558	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3559	export MPI_TYPE_DEPTH=20
3560	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3561	export MPI_GROUP_MAX=64
3562	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3563	if [[ $use_openmp = true ]]
3564	then
3565	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3566	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3567	else
3568	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3569	fi
3570
3571	# next is test for openmp usage
3572	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3573	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3574	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3575	then
3576	export MV2_NUM_PORTS=2
3577	# The default setting of MV2_CPU_MAPPING gives best results
3578	# export MV2_ENABLE_AFFINITY=1
3579	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3580	# if [[ "$sgi_feature" = ice2 ]]
3581	# then
3582	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3583	# else
3584	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3585	# fi
3586	if [[ $use_openmp = true ]]
3587	then
3588	unset MV2_CPU_MAPPING
3589	export MV2_ENABLE_AFFINITY=0
3590	fi
3591	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3592	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3593	if [[ $use_openmp = true ]]
3594	then
3595	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3596	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3597	else
3598	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3599	fi
3600	elif [[ "$mpilib" = impi ]]
3601	then
3602	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3603	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3604	fi
3605	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3606	then
3607	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3608	elif [[ $host = lcflow ]]
3609	then
3610	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3611	elif [[ $host = lcsb ]]
3612	then
3613	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3614	elif [[ $host = lckiaps ]]
3615	then
3616	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3617	elif [[ $host = lckyu* ]]
3618	then
3619	mpiexec -n $ii a.out < runfile_atmos $ROPTS
3620	else
3621	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3622	fi
3623	else
3624
3625	# currently there is no full MPI-2 support on ICE and XT4
3626	(( iia = $numprocs_atmos / $threads_per_task ))
3627	(( iio = $numprocs_ocean / $threads_per_task ))
3628	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3629	printf "\n using $coupled_mode coupling"
3630	printf "\n\n"
3631
3632	if [[ $coupled_mode = "mpi2" ]]
3633	then
3634	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3635	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3636	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3637	then
3638
3639	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3640	then
3641	# export MPI_LAUNCH_TIMEOUT=360
3642	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3643	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3644	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3645	then
3646	# ulimit -s 300000 # A too large stack size causes problems
3647	# export MV2_NUM_PORTS=2
3648	# export MV2_CPU_MAPPING=0:1:2:3
3649	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3650	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3651	fi
3652
3653	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3654	then
3655
3656	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3657	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3658
3659	else
3660	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3661	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3662	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3663	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3664	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3665	fi
3666	wait
3667
3668	else
3669
3670	echo "coupled_run $iia $iio" > runfile_atmos
3671	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3672	then
3673
3674	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3675	then
3676	# export MPI_LAUNCH_TIMEOUT=360
3677	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3678	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3679	then
3680	# ulimit -s 300000 # A too large stack size causes problems
3681	# export MV2_NUM_PORTS=2
3682	# export MV2_CPU_MAPPING=0:1:2:3
3683	mpiexec ./a.out $ROPTS < runfile_atmos
3684	fi
3685
3686	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3687	then
3688
3689	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3690
3691	elif [[ $host = lck \|\| $host = lckordi ]]
3692	then
3693	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3694	fi
3695	wait
3696	fi
3697
3698	fi
3699	elif [[ $host = decalpha ]]
3700	then
3701	dmpirun -np $numprocs a.out $ROPTS
3702	elif [[ $host = lckyoto ]]
3703	then
3704	set -xv
3705	export P4_RSHCOMMAND=plesh
3706	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3707	if [[ "$ENVIRONMENT" = BATCH ]]
3708	then
3709	if [[ "$cond2" = fujitsu ]]
3710	then
3711	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3712	elif [[ "cond2" = pgi ]]
3713	then
3714	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3715	else
3716	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3717	fi
3718	else
3719	if [[ "$cond2" = "" ]]
3720	then
3721	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3722	else
3723	mpirun -np $numprocs ./a.out $ROPTS
3724	fi
3725	fi
3726	set +xv
3727	elif [[ $host = lctit ]]
3728	then
3729	export OMP_NUM_THREADS=$threads_per_task
3730	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3731	if [[ "$threads_per_task" != 1 ]]
3732	then
3733	export MV2_ENABLE_AFFINITY=0
3734	fi
3735	echo "----- PBS_NODEFILE content:"
3736	cat $PBS_NODEFILE
3737	echo "-----"
3738	(( ii = $numprocs / $threads_per_task ))
3739	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3740	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3741	else
3742	mpprun -n $numprocs a.out $ROPTS
3743	fi
3744	[[ $? != 0 ]] && execution_error=true
3745
3746
3747	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3748	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3749	then
3750	apprentice
3751	fi
3752	else
3753	a.out $ROPTS
3754	fi
3755	fi
3756	if [[ $? != 0 \|\| $execution_error = true ]]
3757	then
3758
3759	# ABBRUCH BEI LAUFZEITFEHLER
3760	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3761	printf "\n +++ runtime error occured"
3762	locat=execution
3763	exit
3764	else
3765	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3766	printf "\n$striche\n *** execution finished \n"
3767
3768	# Stop the dvr streaming server and process the dvr output in order
3769	# to create dvrs- and html-files containing all streams
3770	if [[ "$dvrserver_id" != "" ]]
3771	then
3772	kill $dvrserver_id
3773	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3774
3775	# If there is a directory, data have been output by the
3776	# streaming server. Otherwise, user has chosen dvrp_output=local
3777	if [[ -d DATA_DVR ]]
3778	then
3779
3780	# Add the current dvr configuration file to the dvr output
3781	# directory
3782	cp .dvrserver.config DATA_DVR
3783
3784	# Process the dvr output (option -s for also generating
3785	# sequence mode data)
3786	process_dvr_output -d DATA_DVR -f $fname -s
3787
3788	else
3789
3790	# Process the local output
3791	process_dvr_output -l -d DATA_DVR -f $fname
3792
3793	fi
3794
3795	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3796	then
3797
3798	# Process dvr output generated in local mode (dvrp_output=local)
3799	process_dvr_output -l -d DATA_DVR -f $fname
3800
3801	fi
3802	fi
3803
3804
3805
3806	# Call of combine_plot_fields in order to merge single files written
3807	# by each PE into one file.
3808	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3809	then
3810	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3811	printf "\n 2d- and/or 3d-data may be incomplete!"
3812	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3813	elif [[ "$combine_plot_fields" == true ]]
3814	then
3815	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3816	combine_plot_fields${block}.x
3817	else
3818	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3819	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3820	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3821	fi
3822
3823
3824
3825	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3826	(( i = 0 ))
3827	while (( i < ioc ))
3828	do
3829	(( i = i + 1 ))
3830	if (( i == 1 ))
3831	then
3832	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3833	fi
3834	printf "\n >>> ${out_command[$i]}"
3835	eval ${out_command[$i]}
3836	if (( i == ioc ))
3837	then
3838	printf "\n$striche\n"
3839	fi
3840	done
3841
3842
3843	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3844	if [[ $do_trace = true ]]
3845	then
3846	printf "\n\n"
3847	ls -al
3848	fi
3849
3850
3851
3852	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3853	(( i = 0 ))
3854	while (( i < iout ))
3855	do
3856	(( i = i + 1 ))
3857	if (( i == 1 ))
3858	then
3859	printf "\n\n *** saving OUTPUT-files:\n$striche"
3860	fi
3861
3862	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3863	files_for_pes=false; filetyp=file
3864	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3865	then
3866	files_for_pes=true; filetyp=directory
3867	actionout[$i]=""
3868	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3869	then
3870	actionout[$i]=""
3871	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3872	then
3873	files_for_pes=true; filetyp=directory
3874	actionout[$i]="ar"
3875	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3876	then
3877	actionout[$i]="ar"
3878	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3879	then
3880	files_for_pes=true; filetyp=directory
3881	actionout[$i]="fl"
3882	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3883	then
3884	actionout[$i]="fl"
3885	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3886	then
3887	files_for_pes=true; filetyp=directory
3888	actionout[$i]="tr"
3889	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3890	then
3891	actionout[$i]="tr"
3892	fi
3893
3894	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3895	then
3896	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3897	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3898	then
3899	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3900	else
3901
3902
3903	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3904	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3905	# REMOTE-RECHNUNGEN
3906	if [[ "${actionout[$i]}" = tr ]]
3907	then
3908	if [[ $localhost != $fromhost ]]
3909	then
3910	if [[ $files_for_pes = false ]]
3911	then
3912	cps=""
3913	cst=""
3914	else
3915	cps=-c
3916	cst="/"
3917	fi
3918	if [[ $localhost = nech ]]
3919	then
3920
3921	# TRANSFER IN EIGENSTAENDIGEM JOB
3922	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3923	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3924	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3925	if [[ $files_for_pes = false ]]
3926	then
3927	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3928	else
3929	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3930	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3931	fi
3932
3933	echo "set -x" > transfer_${localout[$i]}
3934	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3935
3936	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3937	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3938	printf "\n or higher cycle\n"
3939	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3940
3941	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3942
3943	if [[ $localhost = nech ]]
3944	then
3945	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3946	else
3947	if [[ "$LOGNAME" = b323013 ]]
3948	then
3949	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3950	else
3951	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3952	fi
3953	fi
3954
3955	else
3956
3957	# TRANSFER INNERHALB DIESES JOBS
3958	transfer_failed=false
3959	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3960	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3961	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3962	[[ $? != 0 ]] && transfer_failed=true
3963
3964	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3965	# LOKALER MASCHINE ANLEGEN
3966	if [[ $transfer_failed = true ]]
3967	then
3968	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3969	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3970
3971	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3972	# ANLEGEN.
3973	eval local_catalog=${pathout[$i]}
3974	if [[ ! -d $local_catalog ]]
3975	then
3976	printf " *** local directory does not exist. Trying to create:\n"
3977	printf " $local_catalog \n"
3978	mkdir -p $local_catalog
3979	fi
3980	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3981	transfer_problems=true
3982	fi
3983	fi
3984	else
3985
3986	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3987	actionout[$i]=""
3988	fi
3989	fi
3990
3991
3992	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3993	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3994	# REMOTE-RECHNUNGEN
3995	if [[ "${actionout[$i]}" = tra ]]
3996	then
3997	if [[ $localhost != $fromhost ]]
3998	then
3999	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4000	then
4001
4002	# TRANSFER IN EIGENSTAENDIGEM JOB
4003	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4004	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4005	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4006	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4007
4008	echo "set -x" > transfer_${localout[$i]}
4009	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4010
4011	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4012	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4013	printf "\n or higher cycle\n"
4014	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4015
4016	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4017
4018	if [[ $localhost = nech ]]
4019	then
4020	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4021	else
4022	if [[ $LOGNAME = b323013 ]]
4023	then
4024	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4025	else
4026	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4027	fi
4028	fi
4029
4030	else
4031
4032	# TRANSFER INNERHALB DIESES JOBS
4033	transfer_failed=false
4034	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4035	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4036	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4037	[[ $? != 0 ]] && transfer_failed=true
4038
4039	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4040	# LOKALER MASCHINE ANLEGEN
4041	if [[ $transfer_failed = true ]]
4042	then
4043	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4044	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4045
4046	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4047	# ANLEGEN
4048	eval local_catalog=${pathout[$i]}
4049	if [[ ! -d $local_catalog ]]
4050	then
4051	printf " *** local directory does not exist. Trying to create:\n"
4052	printf " $local_catalog \n"
4053	mkdir -p $local_catalog
4054	fi
4055
4056	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4057	transfer_problems=true
4058	fi
4059	fi
4060	else
4061
4062	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4063	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4064	actionout[$i]=a
4065	fi
4066	fi
4067
4068
4069	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4070	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4071	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4072	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4073	if [[ "${actionout[$i]}" = fl ]]
4074	then
4075	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4076	chmod g+rx $tmp_data_catalog
4077	if [[ $files_for_pes = false ]]
4078	then
4079	printf "\n >>> OUTPUT: ${localout[$i]} to"
4080	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4081	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4082	else
4083	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4084	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4085	mkdir $tmp_data_catalog/${frelout[$i]}
4086	cd ${localout[$i]}
4087	for file in $(ls *)
4088	do
4089	ln -f $file $tmp_data_catalog/${frelout[$i]}
4090	done
4091	cd $TEMPDIR
4092	fi
4093
4094
4095	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4096	if [[ $store_on_archive_system = true ]]
4097	then
4098
4099	if [[ $archive_system = asterix ]]
4100	then
4101	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4102	if [[ $files_for_pes = false ]]
4103	then
4104	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4105	else
4106	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4107	fi
4108	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4109	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4110	echo "then" >> archive_${frelout[$i]}
4111	echo " do_stageout=false" >> archive_${frelout[$i]}
4112	echo "else" >> archive_${frelout[$i]}
4113	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4114	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4115	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4116	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4117	if [[ $files_for_pes = false ]]
4118	then
4119	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4120	else
4121	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4122	fi
4123	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4124	echo "fi" >> archive_${frelout[$i]}
4125	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4126	elif [[ $archive_system = DMF ]]
4127	then
4128	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4129	if [[ $files_for_pes = false ]]
4130	then
4131	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4132	locat=DMF
4133	exit
4134	else
4135	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4136	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4137	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4138	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4139	fi
4140	elif [[ $archive_system = tivoli ]]
4141	then
4142	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4143	if [[ $files_for_pes = false ]]
4144	then
4145	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4146	echo "set -x" >> archive_${frelout[$i]}
4147	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4148	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4149	else
4150
4151	echo "set -x" >> archive_${frelout[$i]}
4152	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4153	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4154	cd $tmp_data_catalog
4155	all_files=`ls -1 ${frelout[$i]}/*`
4156	cd - > /dev/null
4157	(( inode = 0 ))
4158	(( tp1 = tasks_per_node + 1 ))
4159	while (( inode < nodes ))
4160	do
4161	# echo "*** all_files = \"$all_files\" "
4162	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4163	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4164	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4165	# echo "*** files = \"$files\" "
4166	# echo "*** all_files = \"$all_files\" "
4167	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4168	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4169	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4170	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4171	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4172	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4173	(( inode = inode + 1 ))
4174	done
4175	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4176	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4177	fi
4178	elif [[ $archive_system = ut ]]
4179	then
4180	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4181	if [[ $files_for_pes = false ]]
4182	then
4183	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4184	echo "set -x" >> archive_${frelout[$i]}
4185	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4186	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4187	else
4188
4189	echo "set -x" >> archive_${frelout[$i]}
4190	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4191	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4192	cd $tmp_data_catalog
4193	all_files=`ls -1 ${frelout[$i]}/*`
4194	cd - > /dev/null
4195	(( inode = 0 ))
4196	(( tp1 = tasks_per_node + 1 ))
4197	while (( inode < nodes ))
4198	do
4199	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4200	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4201	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4202	(( inode = inode + 1 ))
4203	done
4204	fi
4205	elif [[ $archive_system = none ]]
4206	then
4207	printf " +++ archiving on $localhost not available!\n"
4208	fi
4209
4210	if [[ $archive_system != none ]]
4211	then
4212	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4213	then
4214	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4215	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4216	elif [[ $localhost = nech ]]
4217	then
4218	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4219	fi
4220	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4221	fi
4222	else
4223	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4224	fi
4225
4226
4227	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4228	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4229	if [[ $files_for_pes = false ]]
4230	then
4231	cat /dev/null > ${pathout[$i]}
4232	else
4233	mkdir -p ${pathout[$i]}
4234	fi
4235
4236	fi
4237
4238
4239	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4240	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4241	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4242	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4243	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4244	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4245	if [[ "${actionout[$i]}" = ar ]]
4246	then
4247	if [[ $files_for_pes = false ]]
4248	then
4249	printf "\n >>> OUTPUT: ${localout[$i]} to"
4250	printf "\n ${pathout[$i]}"
4251	printf "\n File will be copied to archive-system ($archive_system) !\n"
4252	else
4253	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4254	printf "\n ${pathout[$i]}"
4255	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4256	fi
4257	mv ${localout[$i]} ${frelout[$i]}
4258
4259	file_saved=false
4260
4261	if [[ $archive_system = asterix ]]
4262	then
4263	do_stageout=true
4264	(( stageout_anz = 0 ))
4265	while [[ $do_stageout = true ]]
4266	do
4267	if [[ $files_for_pes = false ]]
4268	then
4269	stageout ${frelout[$i]} > STAGE_OUTPUT
4270	else
4271	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4272	fi
4273	cat STAGE_OUTPUT
4274	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4275	then
4276	file_saved=true
4277	do_stageout=false
4278	else
4279	if [[ $files_for_pes = false ]]
4280	then
4281	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4282	else
4283	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4284	fi
4285	(( stageout_anz = stageout_anz + 1 ))
4286	if (( stageout_anz == 10 ))
4287	then
4288	printf "\n +++ stoped after 10 unsuccessful tries!"
4289	archive_save=false
4290	do_stageout=false
4291	else
4292	printf "\n *** new try to store on archive after 15 min:"
4293	sleep 900
4294	fi
4295	fi
4296	done
4297	elif [[ $archive_system = DMF ]]
4298	then
4299	if [[ $files_for_pes = false ]]
4300	then
4301	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4302	locat=DMF
4303	exit
4304	else
4305	rm -rf $ARCHIVE/${frelout[$i]}
4306	cp -r ${frelout[$i]} $ARCHIVE
4307	fi
4308	file_saved=true
4309	elif [[ $archive_system = tivoli ]]
4310	then
4311	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4312	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4313	# GELEGT WERDEN
4314	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4315	chmod g+rx $tmp_data_catalog
4316	if [[ $files_for_pes = false ]]
4317	then
4318	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4319	else
4320	mkdir $tmp_data_catalog/${frelout[$i]}
4321	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4322	fi
4323
4324	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4325	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4326	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4327	if [[ $files_for_pes = false ]]
4328	then
4329	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4330	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4331	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4332	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4333	else
4334	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4335	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4336	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4337	fi
4338
4339	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4340	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4341	file_saved=true
4342
4343	elif [[ $archive_system = ut ]]
4344	then
4345	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4346	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4347	# GELEGT WERDEN
4348	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4349	chmod g+rx $tmp_data_catalog
4350	if [[ $files_for_pes = false ]]
4351	then
4352	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4353	else
4354	mkdir $tmp_data_catalog/${frelout[$i]}
4355	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4356	fi
4357
4358	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4359	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4360	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4361	if [[ $files_for_pes = false ]]
4362	then
4363	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4364	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4365	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4366	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4367	else
4368	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4369	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4370	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4371	fi
4372
4373	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4374	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4375	file_saved=true
4376
4377	else
4378	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4379	archive_save=false
4380	fi
4381	if [[ $file_saved = true ]]
4382	then
4383	if [[ $files_for_pes = false ]]
4384	then
4385	cat /dev/null > ${pathout[$i]}
4386	else
4387	mkdir -p ${pathout[$i]}
4388	fi
4389	fi
4390	fi
4391
4392	# APPEND AUF LOKALER MASCHINE
4393	if [[ "${actionout[$i]}" = "a" ]]
4394	then
4395	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4396	then
4397	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4398	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4399	else
4400	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4401	cat ${localout[$i]} >> ${pathout[$i]}
4402	fi
4403	fi
4404
4405	# KOPIEREN AUF LOKALER MASCHINE
4406	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4407	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4408	then
4409
4410	# KOPIEREN AUF EINPROZESSORMASCHINE
4411	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4412	then
4413	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4414	if [[ $link_local_output = true ]]
4415	then
4416	printf " using ln -f\n"
4417	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4418	fi
4419	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4420	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4421	then
4422	if [[ $link_local_output = true ]]
4423	then
4424	printf " ln failed, using cp...\n"
4425	fi
4426	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4427	fi
4428	else
4429	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4430	if [[ $link_local_output = true ]]
4431	then
4432	printf " using ln -f\n"
4433	ln -f ${localout[$i]} ${pathout[$i]}
4434	fi
4435	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4436	if [[ ! -f "${pathout[$i]}" ]]
4437	then
4438	if [[ $link_local_output = true ]]
4439	then
4440	printf " ln failed, using cp...\n"
4441	fi
4442	cp ${localout[$i]} ${pathout[$i]}
4443	fi
4444	fi
4445
4446	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4447	then
4448
4449	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4450	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4451	# WIRD DANN KOPIERT
4452	# PER MOVE UMBENANNT WERDEN
4453	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4454	if [[ $link_local_output = true ]]
4455	then
4456	printf " using ln -f\n"
4457	mkdir ${pathout[$i]}
4458	cd ${localout[$i]}
4459	for file in $(ls *)
4460	do
4461	ln -f $file ${pathout[$i]}
4462	done
4463	cd $TEMPDIR
4464	fi
4465	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4466	if [[ ! -f "${pathout[$i]}/_0000" ]]
4467	then
4468	if [[ $link_local_output = true ]]
4469	then
4470	printf " ln failed for .../_0000, using cp...\n"
4471	fi
4472	cp -r ${localout[$i]} ${pathout[$i]}
4473	fi
4474
4475	fi
4476	fi
4477	done
4478	if (( i != 0 ))
4479	then
4480	if [[ $transfer_problems = true ]]
4481	then
4482	printf "\n$striche\n *** OUTPUT-files saved"
4483	printf "\n +++ WARNING: some data transfers failed! \n"
4484	else
4485	printf "\n$striche\n *** all OUTPUT-files saved \n"
4486	fi
4487	fi
4488
4489
4490	# EVENTUELL FOLGEJOB STARTEN
4491	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4492	if [[ -f CONTINUE_RUN ]]
4493	then
4494
4495	if [[ $archive_save = true ]]
4496	then
4497
4498	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4499	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4500	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4501	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4502	# HANDEN
4503	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4504	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4505	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4506	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4507	then
4508	mc=`echo $mc \| sed 's/#/f/g'`
4509	fi
4510
4511
4512	# JOB STARTEN
4513	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4514	echo " $mc"
4515	printf "\n$striche\n"
4516	if [[ $localhost != $fromhost ]]
4517	then
4518
4519	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4520	then
4521	echo "*** ssh will be used to initiate restart-runs!"
4522	echo " return_addres=\"$return_addres\" "
4523	echo " return_username=\"$return_username\" "
4524	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4525	then
4526	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4527	else
4528	if [[ $localhost = ibmkisti ]]
4529	then
4530	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4531	else
4532	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4533	fi
4534	fi
4535	else
4536	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4537	locat=restart; exit
4538	fi
4539
4540	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4541	# DER AKTUELLE JOB ENDET
4542	if [[ $queue = special1q ]]
4543	then
4544	sleep 120
4545	else
4546	sleep 30
4547	fi
4548
4549	else
4550
4551	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4552	# RUFEN WERDEN, AUSSER AUF lcfimm
4553	cd $LOCAL_PWD
4554	if [[ $localhost = lcfimm ]]
4555	then
4556	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4557	else
4558	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4559	fi
4560	cd - > /dev/null
4561	fi
4562	printf "\n$striche\n *** restart-run initiated \n"
4563
4564
4565	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4566	# GEHOLT WORDEN SIND, LOESCHEN
4567	(( i = 0 ))
4568	while (( i < iin ))
4569	do
4570	(( i = i + 1 ))
4571	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4572	then
4573	rm -r $tmp_data_catalog/${frelin[$i]}
4574	fi
4575	done
4576
4577	else
4578
4579	printf "\n +++ no restart-run possible, since errors occured"
4580	printf "\n during the archive process"
4581	fi
4582
4583	fi
4584
4585
4586
4587	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4588	if [[ "$email_notification" != "none" ]]
4589	then
4590
4591	if [[ $localhost != $fromhost ]]
4592	then
4593	if [[ -f CONTINUE_RUN ]]
4594	then
4595	echo "PALM restart run necessary" > email_text
4596	echo "description header of actual run:" >> email_text
4597	cat CONTINUE_RUN >> email_text
4598	echo "mrun-command to restart:" >> email_text
4599	echo "$mc" >> email_text
4600	else
4601	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4602	fi
4603	mail $email_notification < email_text
4604	printf "\n *** email notification sent to \"$email_notification\" "
4605	fi
4606	fi
4607
4608
4609
4610	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4611	cd $HOME
4612	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4613
4614	else
4615
4616
4617	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4618	# CHENDE AKTIONEN DURCHGEFUEHRT
4619
4620	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4621	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4622	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4623	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4624	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4625	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4626	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4627	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4628	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4629	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4630	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4631	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4632	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4633	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4634	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4635	if [[ $use_openmp = true ]]
4636	then
4637	mrun_com=${mrun_com}" -O $threads_per_task"
4638	fi
4639	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4640	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4641	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4642	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4643	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4644	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4645	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4646	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4647	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4648	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4649	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4650	if [[ $do_remote = true ]]
4651	then
4652	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4653	fi
4654
4655
4656	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4657	jobfile=jobfile.$RANDOM
4658
4659
4660	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4661	echo "mkdir $TEMPDIR" >> $jobfile
4662	echo "cd $TEMPDIR" >> $jobfile
4663
4664
4665	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4666	if [[ $do_trace = true ]]
4667	then
4668	echo "set -x" >> $jobfile
4669	else
4670	echo "set +vx" >> $jobfile
4671	fi
4672
4673
4674	# initialize the environment and load modules
4675	if [[ "$init_cmds" != "" ]]
4676	then
4677	echo "$init_cmds" >> $jobfile
4678	fi
4679	if [[ "$module_calls" != "" ]]
4680	then
4681	echo "$module_calls" >> $jobfile
4682	fi
4683
4684
4685	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4686	# DATEI FUER DEN JOB
4687	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4688	then
4689
4690	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4691	# KOPIEREN
4692	if [[ $restart_run != true ]]
4693	then
4694	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4695	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4696	fi
4697
4698	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4699	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4700	echo "set -x" >> $jobfile
4701	if [[ $host = $localhost ]]
4702	then
4703	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4704	else
4705	if [[ $host != ibmkisti ]]
4706	then
4707	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4708	else
4709	# on KISTI's IBM firewall is only opened on interactive node
4710	echo "localdir=\`pwd\`" >> $jobfile
4711	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4712	fi
4713	fi
4714	echo "export SOURCES_COMPLETE=true" >> $jobfile
4715
4716	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4717	# ARBEITSVERZEICHNIS VERSCHIEBEN
4718	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4719	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4720	echo "execute_mrun=true" >> $jobfile
4721	echo " " >> $jobfile
4722
4723	else
4724
4725	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4726	# SOWIE GEGEBENENFALLS DES MAKEFILES
4727	if [[ $do_compile = true ]]
4728	then
4729
4730	source_catalog=SOURCES_FOR_RUN_$fname
4731
4732	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4733	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4734	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4735	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4736	echo "export SOURCES_COMPLETE=true" >> $jobfile
4737	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4738
4739	for filename in $source_list
4740	do
4741	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4742	echo "cat > $filename << \"%END%\"" >> $jobfile
4743	cat $source_catalog/$filename >> $jobfile
4744	echo " " >> $jobfile
4745	echo "%END%" >> $jobfile
4746	echo " " >> $jobfile
4747	done
4748
4749	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4750	echo "cat > Makefile << \"%END%\"" >> $jobfile
4751	cat $source_catalog/Makefile >> $jobfile
4752	echo " " >> $jobfile
4753	echo "%END%" >> $jobfile
4754	echo " " >> $jobfile
4755
4756	echo "cd - > /dev/null" >> $jobfile
4757
4758	fi
4759
4760
4761	# ABSPEICHERN DER KONFIGURATIONSDATEI
4762	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4763	echo "cat > $config_file << \"%END%\"" >> $jobfile
4764	cat $config_file >> $jobfile
4765	echo "%END%" >> $jobfile
4766	echo " " >> $jobfile
4767
4768
4769	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4770	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4771	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4772	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4773	echo "%END%" >> $jobfile
4774	echo "chmod u+x $mrun_script_name" >> $jobfile
4775	echo "execute_mrun=true" >> $jobfile
4776	echo " " >> $jobfile
4777
4778	fi
4779
4780
4781	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4782	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4783	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4784	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4785	if [[ $do_remote = true ]]
4786	then
4787	(( i = 0 ))
4788	while (( i < iin ))
4789	do
4790	(( i = i + 1 ))
4791	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4792	if [[ "${transin[$i]}" = job ]]
4793	then
4794	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4795	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4796	echo " " >> $jobfile
4797	echo "%END%" >> $jobfile
4798	else
4799	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4800	fi
4801
4802	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4803	echo "if [[ \$? = 1 ]]" >> $jobfile
4804	echo "then" >> $jobfile
4805	echo " echo \" \" " >> $jobfile
4806	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4807	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4808	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4809	echo " execute_mrun=false" >> $jobfile
4810	echo "fi" >> $jobfile
4811	done
4812	fi
4813
4814	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4815	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4816	echo "LOCAL_PWD=$working_directory" >> $jobfile
4817	echo "export LOCAL_PWD" >> $jobfile
4818
4819	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4820	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4821	echo "export LOCAL_MRUN_PATH" >> $jobfile
4822
4823	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4824	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4825	then
4826	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4827	fi
4828
4829	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4830	echo "set -x" >> $jobfile
4831	echo "queue=$queue" >> $jobfile
4832	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4833
4834	echo 'ls -al; echo `pwd`' >> $jobfile
4835	echo "cd \$HOME" >> $jobfile
4836	echo "rm -rf $TEMPDIR" >> $jobfile
4837
4838
4839
4840
4841	# JOB PER SUBJOB STARTEN
4842	if [[ $silent = false ]]
4843	then
4844	printf "\n "
4845	else
4846	printf "\n\n"
4847	fi
4848
4849	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4850	rm -rf $jobfile
4851
4852
4853	fi # ENDE REMOTE-TEIL
4854
4855
4856
4857	# ENDE DER PROZEDUR

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