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source: palm/trunk/SCRIPTS/mrun @ 1084

Last change on this file since 1084 was 1084, checked in by maronga, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# -----------------
24	#
25	# Former revisions:
26	# -----------------
27	# $Id: mrun 1084 2013-01-04 10:24:06Z maronga $
28	#
29	# 1083 2013-01-04 10:22:09Z maronga
30	# bugfix in parameter file check (read %cpp_options was missing)
31	#
32	# 1069 2012-11-28 16:18:43Z maronga
33	# bugfix: coupling mode was always set to mpi2, typos removed
34	#
35	# 1058 2012-11-21 07:00:35Z raasch
36	# Intel inspector (inspxe) is given the number of PEs instead of the number of
37	# nodes
38	#
39	# 1046 2012-11-09 14:38:45Z maronga
40	# code put under GPL (PALM 3.9)
41	#
42	# 21/03/94 - Siggi - first version (1.0)
43	# 03/03/94 - Siggi - start with developing the script
44	#--------------------------------------------------------------------------------#
45
46
47
48	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
49
50	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
51	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
52	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
53
54	AddFilenames=""
55	additional_conditions=""
56	add_source_path=""
57	afname=""
58	archive_save=true
59	archive_system=none
60	check_namelist_files=true
61	combine_plot_fields=true
62	compiler_name=""
63	cond1=""
64	cond2=""
65	config_file=.mrun.config
66	coupled_dist=""
67	coupled_mode="mpi1"
68	cpp_opts=""
69	cpp_options=""
70	cpumax=0
71	cpurest=0
72	delete_temporary_catalog=true
73	do_batch=false
74	do_compile=true
75	do_remote=false
76	do_stagein=true
77	do_stageout=true
78	do_trace=false
79	email_notification="none"
80	exclude=""
81	executable=""
82	execution_error=false
83	fimm=false
84	fname=test
85	fromhost=""
86	global_revision=""
87	group_number=none
88	host=""
89	host_file=""
90	hp=""
91	ignore_archive_error=false
92	input_list=""
93	interpreted_config_file=""
94	job_catalog="~/job_queue"
95	job_on_file=""
96	keep_data_from_previous_run=false
97	link_local_input=false
98	link_local_output=false
99	localhost_realname=$(hostname)
100	local_compile=false
101	local_dvrserver_running=.FALSE.
102	locat=normal
103	mainprog=""
104	makefile=""
105	max_par_io_str=""
106	mc=$0
107	while [[ $(echo $mc \| grep -c "/") != 0 ]]
108	do
109	mc=`echo $mc \| cut -f2- -d"/"`
110	done
111	module_calls=""
112	mrun_script_name=$mc
113	netcdf_inc=""
114	netcdf_lib=""
115	netcdf_support=false
116	node_usage=default
117	numprocs=""
118	numprocs_atmos=0
119	numprocs_ocean=0
120	OOPT=""
121	openmp=false
122	output_list=""
123	package_list=""
124	punkte="..........................................................."
125	queue=none
126	read_from_config=""
127	restart_run=false
128	if [[ `hostname` = rte10 ]]
129	then
130	return_addres=133.5.185.60
131	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
132	elif [[ `hostname` = climate0 ]]
133	then
134	return_addres=165.132.26.68
135	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
136	elif [[ `hostname` = urban00 ]]
137	then
138	return_addres=147.46.30.151
139	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
140	else
141	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
142	fi
143	return_password=""
144	return_username=$LOGNAME
145	remotecall=false
146	remote_username=""
147	run_coupled_model=false
148	run_mode=""
149	scirocco=false
150	store_on_archive_system=false
151	striche=" ----------------------------------------------------------------------------"
152	silent=false
153	source_list=""
154	source_path=SOURCE
155	tasks_per_node=""
156	threads_per_task=1
157	tmpcreate=false
158	tmp_data_catalog=""
159	transfer_problems=false
160	usern=$LOGNAME
161	use_openmp=false
162	working_directory=`pwd`
163	TOPT=""
164	XOPT=""
165	zeit=$( date \| cut -c 12-19 )
166
167	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
168	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
169
170	typeset -R30 calltime
171	typeset -L20 spalte1
172	typeset -L40 spalte2
173	typeset -L60 spalte3
174	typeset -L35 string1=`date`
175	typeset -L12 string2=$usern
176	typeset -L12 string3=$localhost_realname
177	typeset -L12 string4
178	typeset -L12 string5
179	typeset -L30 version="MRUN 2.0 Rev$Rev: 1084 $"
180
181
182
183	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
184	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
185
186	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
187	# EXPORTIERT WERDEN
188	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
189	export group_number input_list memory numprocs output_list queue run_mode
190
191
192
193	# FEHLERBEHANDLUNG
194	# BEI EXIT:
195	trap 'rm -rf $working_directory/tmp_mrun
196	if [[ $locat != localhost ]]
197	then
198	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
199	# then
200	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
201	#MRUN-calls on $localhost
202	#
203	#date and time user localhost remotehost termination mrun-command
204	#--------------------------------------------------------------------------------------------------------------------
205	#%STATEND%
206	# chmod 666 ${mrun_path}/statistik/mrun_statistik
207	# fi
208	#
209	# # EINTRAG IN DIE STATISTIK-DATEI
210	# string4=$host
211	# string5=$locat
212	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
213	# then
214	# if [[ $do_batch = true ]]
215	# then
216	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
217	# else
218	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
219	# fi
220	# fi
221	echo " " > /dev/null
222	fi
223
224	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
225	then
226
227	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
228	(( i = 0 ))
229	while (( i < iec ))
230	do
231	(( i = i + 1 ))
232	printf "\n *** Execution of ERROR-command:\n"
233	printf " >>> ${err_command[$i]}\n"
234	eval ${err_command[$i]}
235	done
236	if [[ -n $interpreted_config_file ]] then
237	rm -rf $interpreted_config_file
238	fi
239	if [[ -n .mrun_environment ]] then
240	rm -rf .mrun_environment
241	fi
242	if [[ $tmpcreate = true ]]
243	then
244	printf "\n *** Contents of \"$TEMPDIR\":\n"
245	ls -al; cd
246	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
247	fi
248	if [[ "$dvrserver_id" != "" ]]
249	then
250	echo "+++ killing dvrserver_id=$dvrserver_id"
251	kill $dvrserver_id
252	fi
253	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
254	then
255	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
256	fi
257	printf "\n\n+++ MRUN killed \n\n"
258	elif [[ $locat != control_c ]]
259	then
260	printf "\n\n --> all actions finished\n\n"
261	printf " Bye, bye $usern !!\n\n"
262	fi' exit
263
264
265	# BEI TERMINAL-BREAK:
266	trap 'rm -rf $working_directory/tmp_mrun
267	rm -rf $working_directory/tmp_check_namelist_files
268	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
269	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
270	then
271	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
272	fi
273	if [[ "$dvrserver_id" != "" ]]
274	then
275	echo "+++ killing dvrserver_id=$dvrserver_id"
276	kill $dvrserver_id
277	fi
278	printf "\n+++ MRUN killed by \"^C\" \n\n"
279	locat=control_c
280	exit
281	' 2
282
283
284	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
285	# BEEN SET
286	if [[ "$PALM_BIN" = "" ]]
287	then
288	printf "\n +++ environment variable PALM_BIN has not been set"
289	printf "\n please set it to the directory where the PALM scripts are located"
290	locat=palm_bin; exit
291	fi
292	export PATH=$PALM_BIN:$PATH
293
294
295
296	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
297	# FUER FOLGEJOBS BENOETIGT WIRD
298	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
299	do
300	case $option in
301	(a) afname=$OPTARG;;
302	(A) store_on_archive_system=true; mc="$mc -A";;
303	(b) do_batch=true; mc="$mc -b";;
304	(B) delete_temporary_catalog=false; mc="$mc -B";;
305	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
306	(C) restart_run=true; mc="$mc -C";;
307	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
308	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
309	(F) job_on_file="-D"; mc="$mc -F";;
310	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
311	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
312	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
313	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
314	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
315	(I) ignore_archive_error=true; mc="$mc -I";;
316	(k) keep_data_from_previous_run=true; mc="$mc -k";;
317	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
318	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
319	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
320	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
321	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
322	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
323	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
324	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
325	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
326	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
327	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
328	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
329	(S) read_from_config=false; mc="$mc -S";;
330	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
331	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
332	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
333	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
334	(v) silent=true; mc="$mc -v";;
335	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
336	(x) do_trace=true;set -x; mc="$mc -x";;
337	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
338	(y) ocean_file_appendix=true; mc="$mc -y";;
339	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
340	(z) check_namelist_files=false; mc="$mc -z";;
341	(Z) combine_plot_fields=false; mc="$mc -Z";;
342	(\?) printf "\n +++ unknown option $OPTARG \n"
343	printf "\n --> type \"$0 ?\" for available options \n"
344	locat=parameter;exit;;
345	esac
346	done
347
348
349	# EVTL. POSITIONSPARAMETER EINLESEN
350	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
351	shift OPTIND-1
352
353
354	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
355	if [[ "$1" = "?" ]]
356	then
357	(printf "\n *** mrun can be called as follows:\n"
358	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
359	printf "\n Description of available options:\n"
360	printf "\n Option Description Default-Value"
361	printf "\n -a base name of input files equiv. -d"
362	printf "\n -A archiving when using file-attribute fl"
363	printf "\n -b batch-job on local machine ---"
364	printf "\n -B do not delete temporary directory at end ---"
365	printf "\n -c configuration file .mrun.config"
366	printf "\n -d base name of files attached to program test"
367	printf "\n -D preprocessor(cpp)-directives \"\" "
368	printf "\n -F create remote job file only ---"
369	printf "\n -h execution host $localhost_realname"
370	printf "\n -i INPUT control list \"\" "
371	printf "\n -I archiving errors of previous batch-jobs"
372	printf "\n will be ignored"
373	printf "\n -k keep data from previous run"
374	printf "\n -K additional conditions for controling"
375	printf "\n usage of conditional code and"
376	printf "\n env-variables in configuration file \"\" "
377	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
378	printf "\n -M Makefile name Makefile"
379	printf "\n -n node usage (shared/not_shared) depending on -h"
380	printf "\n -o OUTPUT control list \"\" "
381	printf "\n -O use OpenMP ---"
382	printf "\n -p software package list \"\" "
383	printf "\n -q queue \"$queue\" "
384	printf "\n -r run control list (combines -i -o) \"\" "
385	printf "\n -s filenames of routines to be compiled \"\" "
386	printf "\n must end with .f, .f90, .F, or .c !"
387	printf "\n use \"..\" for more than one file and wildcards"
388	printf "\n -s LM compiles all locally modified files"
389	printf "\n -S config file interpreted by shellscript ---"
390	printf "\n -t allowed cpu-time in seconds (batch) 0"
391	printf "\n -T tasks per node depending on -h"
392	printf "\n -u username on remote machine \"\" "
393	printf "\n -v no prompt for confirmation ---"
394	printf "\n -w maximum parallel io streams as given by -X"
395	printf "\n -x tracing of mrun for debug purposes ---"
396	printf "\n -X # of processors (on parallel machines) 1"
397	printf "\n -y add appendix \"_O\" to all local output"
398	printf "\n files (ocean precursor runs followed by"
399	printf "\n coupled atmosphere-ocean runs) ---"
400	printf "\n -Y run coupled model, \"#1 #2\" with"
401	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
402	printf "\n -z disable a priori parameter file check ---"
403	printf "\n -Z skip combine_plot_fields at the end of "
404	printf "\n the simulation ---"
405	printf "\n "
406	printf "\n Possible values of positional parameter <modus>:"
407	printf "\n \"?\" - this outline \n\n") \| more
408	exit
409	elif [[ "$1" != "" ]]
410	then
411	printf "\n +++ positional parameter $1 unknown \n"
412	locat=parameter; exit
413	fi
414
415
416
417	# KURZE STARTMELDUNG
418	printf "\n*** $version "
419	printf "\n will be executed. Please wait ..."
420
421
422
423	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
424	if [[ ! -f $config_file ]]
425	then
426	printf "\n\n +++ configuration file: "
427	printf "\n $config_file"
428	printf "\n does not exist"
429	locat=connect; exit
430	fi
431
432
433	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
434	line=""
435	grep "%host_identifier" $config_file > tmp_mrun
436	while read line
437	do
438	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
439	then
440	HOSTNAME=`echo $line \| cut -d" " -s -f2`
441	host_identifier=`echo $line \| cut -d" " -s -f3`
442	if [[ $localhost_realname = $HOSTNAME ]]
443	then
444	localhost=$host_identifier
445	break
446	fi
447	fi
448	done < tmp_mrun
449
450	if [[ "$localhost" = "" ]]
451	then
452	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
453	printf "\n for local host \"$localhost_realname\"."
454	printf "\n Please add line"
455	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
456	printf "\n to the configuration file."
457	locat=localhost; exit
458	fi
459
460
461	# HOSTSPEZIFISCHE VARIABLEN SETZEN
462	case $localhost_realname in
463	(r1\|r2\|h01\|b01) archive_system=tivoli;;
464	(cs*) archive_system=ut;;
465	(fimm.bccs.uib.no) fimm=true;;
466	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
467	(scirocco) scirocco=true;;
468	esac
469
470
471
472	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
473	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
474	[[ "$afname" = "" ]] && afname=$fname
475
476
477	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
478	if [[ "$run_mode" != "" ]]
479	then
480	input_list="$input_list $run_mode"
481	output_list="$output_list $run_mode"
482	fi
483
484
485	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
486	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
487	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
488	# STARTET)
489	if [[ "$fromhost" = "" ]]
490	then
491	fromhost=$localhost
492	fi
493
494
495	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
496	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
497	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
498	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
499	if [[ -n $host && "$host" != $localhost ]]
500	then
501	do_batch=true
502	do_remote=true
503	case $host in
504	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
505	(*) printf "\n"
506	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
507	printf "\n is not available"
508	locat=nqs; (( iec = 0 )); exit;;
509	esac
510	else
511	host=$localhost
512	fi
513
514
515	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
516	if [[ -n $additional_conditions ]]
517	then
518	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
519	cond1=`echo $additional_conditions \| cut -d" " -f1`
520	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
521	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
522	if [[ -n $dummy ]]
523	then
524	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
525	locat=options; exit
526	fi
527	block=_$cond1
528	[[ -n $cond2 ]] && block=${block}_$cond2
529	fi
530
531
532	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
533	if [[ $run_coupled_model = true ]]
534	then
535
536	if [[ -n $coupled_dist ]]
537	then
538
539	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
540	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
541
542	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
543	then
544
545	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
546	printf "\n PEs (total) : $numprocs"
547	printf "\n PEs (atmosphere): $numprocs_atmos"
548	printf "\n PEs (ocean) : $numprocs_ocean"
549	locat=coupling; exit
550
551	fi
552
553	else
554
555	(( numprocs_ocean = $numprocs / 2 ))
556	(( numprocs_atmos = $numprocs / 2 ))
557
558	fi
559	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
560
561	# GET coupled_mode FROM THE CONFIG FILE
562	line=""
563	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
564	while read line
565	do
566	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
567	then
568	coupled_mode="mpi2"
569	fi
570	done < tmp_mrun
571
572	fi
573
574
575	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
576	# ARCHIVIERUNG FEHLGESCHLAGEN IST
577	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
578	then
579	if [[ $ignore_archive_error = false ]]
580	then
581	printf "\n +++ data archiving of previous run failed"
582	printf "\n see directory \~/job_queue on remote machine"
583	locat=archive; exit
584	else
585	printf "\n +++ warning: data archiving in a previous run failed"
586	printf "\n MRUN continues, trying to get backup copy"
587	fi
588	fi
589
590
591
592	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
593	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
594	if [[ "$read_from_config" = false ]]
595	then
596
597	[[ $silent = false ]] && printf "\n Reading the configuration file... "
598	while read zeile
599	do
600	[[ $silent = false ]] && printf "."
601
602
603	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
604	# ERSETZEN
605	eval zeile=\"$zeile\"
606
607
608	# INTERPRETATION DER ZEILE
609	if [[ "$(echo $zeile)" = "" ]]
610	then
611	# LEERZEILE, KEINE AKTION
612	continue
613
614	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
615	then
616
617	# ZEILE IST KOMMENTARZEILE
618	true
619
620	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
621	then
622
623	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
624	zeile=$(echo $zeile \| cut -c2-)
625	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
626	var=`echo $zeile \| cut -d" " -f1`
627	value=`echo $zeile \| cut -d" " -s -f2`
628	for_host=`echo $zeile \| cut -d" " -s -f3`
629	for_cond1=`echo $zeile \| cut -d" " -s -f4`
630	for_cond2=`echo $zeile \| cut -d" " -s -f5`
631
632	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
633	then
634
635	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
636	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
637	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
638
639
640	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
641	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
642	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
643	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
644	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
645	# KONFIGURATIONSDATEI
646	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
647	then
648	eval $var=\$value
649
650	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
651	if [[ $do_trace = true ]]
652	then
653	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
654	fi
655	fi
656
657	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
658	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
659	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
660	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
661	if [[ $var = host ]]
662	then
663	if [[ -n $host && "$host" != $localhost ]]
664	then
665	do_batch=true
666	do_remote=true
667	case $host in
668	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
669	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
670	printf "\n is not available"
671	locat=nqs; exit;;
672	esac
673	else
674	host=$localhost
675	fi
676	fi
677
678	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
679	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
680	# DEN PROGRAMMEN BENOETIGT WERDEN
681	export $var
682	fi
683
684
685
686
687	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
688	then
689
690	# ZEILE DEFINIERT ERROR-KOMMANDO
691	(( iec = iec + 1 ))
692	zeile=$(echo $zeile \| cut -c4-)
693	err_command[$iec]="$zeile"
694
695	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
696	then
697
698	# ZEILE DEFINIERT INPUT-KOMMANDO
699	(( iic = iic + 1 ))
700	zeile=$(echo $zeile \| cut -c4-)
701	in_command[$iic]="$zeile"
702
703	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
704	then
705
706	# ZEILE DEFINIERT OUTPUT-KOMMANDO
707	(( ioc = ioc + 1 ))
708	zeile=$(echo $zeile \| cut -c4-)
709	out_command[$ioc]="$zeile"
710
711	else
712
713	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
714	# s2a: in/out - Feld
715	# s2b: loc - Feld (optional)
716	# s2c: tr/ar - Feld (optional)
717	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
718	s1=`echo $zeile \| cut -d" " -f1`
719	s2=`echo $zeile \| cut -d" " -s -f2`
720	s2a=$(echo $s2 \| cut -d":" -f1)
721	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
722	then
723	s2b=""
724	s2c=""
725	else
726	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
727	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
728	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
729	fi
730	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
731	s3=`echo $zeile \| cut -d" " -f3`
732	s4=`echo $zeile \| cut -d" " -s -f4`
733	s5=`echo $zeile \| cut -d" " -s -f5`
734	s6=`echo $zeile \| cut -d" " -s -f6`
735
736
737	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
738	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
739	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
740	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
741	# HANDEN SEIN MUSS (D.H. s2b = loc)
742	IFSALT="$IFS"; IFS="$IFS:"
743	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
744	then
745	found=false
746	for actual in $input_list
747	do
748	for formal in $s3
749	do
750	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
751	done
752	done
753	if [[ $found = true ]]
754	then
755	(( iin = iin + 1 ))
756	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
757	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
758	extin[$iin]=$s6
759	fi
760	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
761	then
762	found=false
763	for actual in $output_list
764	do
765	for formal in $s3
766	do
767	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
768	done
769	done
770	if [[ $found = true ]]
771	then
772	(( iout = iout + 1 ))
773	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
774	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
775	fi
776	elif [[ "$s2a" != in && "$s2a" != out ]]
777	then
778	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
779	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
780	locat=connect; exit
781	fi
782	IFS="$IFSALT"
783	fi
784	done < $config_file
785
786	else
787
788
789	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
790	[[ $silent = false ]] && printf "..."
791	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
792	export interpreted_config_file=.icf.$RANDOM
793
794
795
796	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
797	# VERFUEGUNG STELLEN
798	cat > .mrun_environment << %%END%%
799	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
800	config_file = '$config_file', do_remote = '$do_remote',
801	do_trace = '$do_trace', host = '$host',
802	input_list = '$input_list', icf = '$interpreted_config_file',
803	localhost = '$localhost', output_list = '$output_list' /
804
805	%%END%%
806
807	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
808	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
809	mrun_memory=$memory
810	mrun_group_number=$group_number
811	mrun_cpumax=$cpumax
812	mrun_numprocs=$numprocs
813
814	if [[ $localhost_realname = "sx-fep" ]]
815	then
816	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
817	else
818
819	if [[ "$host" != $localhost ]]
820	then
821
822	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
823	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
824	if [[ $? != 0 ]]
825	then
826	printf "\n\n +++ no interpret_config found"
827	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
828	locat=interpret_config; exit
829	fi
830	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
831	$interpret_config_executable
832
833	else
834
835	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
836	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
837	then
838	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
839	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
840	locat=interpret_config; exit
841	else
842	interpret_config${block}.x
843	fi
844
845	fi
846	fi
847	rm .mrun_environment
848
849
850	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
851	chmod u+x $interpreted_config_file
852	export PATH=$PATH:.
853	. $interpreted_config_file
854	rm $interpreted_config_file
855
856
857	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
858	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
859	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
860	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
861	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
862	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
863	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
864
865	fi
866
867
868	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
869	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
870	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
871	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
872	if [[ "$SOURCES_COMPLETE" = "" ]]
873	then
874
875	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
876	# VEREINBART WURDE
877	source_path=""
878	line=""
879	grep "%source_path" $config_file > tmp_mrun
880	while read line
881	do
882	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
883	then
884	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
885	then
886	global_source_path=`echo $line \| cut -d" " -f2`
887	fi
888	fi
889	done < tmp_mrun
890
891	line=""
892	found=false
893	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
894	while read line
895	do
896	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
897	then
898	if [[ $found = true ]]
899	then
900	printf "\n\n +++ more than one source path found in configuration file"
901	printf "\n for local host \"$localhost\" "
902	locat=source_path; exit
903	fi
904	source_path=`echo $line \| cut -d" " -f2`
905	found=true
906	fi
907	done < tmp_mrun
908	rm tmp_mrun
909
910	if [[ "$source_path" = "" ]]
911	then
912	if [[ "$global_source_path" != "" ]]
913	then
914	source_path=$global_source_path
915	else
916	printf "\n\n +++ no source path found in configuration file"
917	printf "\n for local host \"$localhost\" "
918	locat=source_path; exit
919	fi
920	fi
921	eval source_path=$source_path
922
923	if [[ ! -d $source_path ]]
924	then
925	printf "\n\n +++ source path \"$source_path\" on local host"
926	printf "\n \"$localhost\" does not exist"
927	locat=source_path; exit
928	fi
929
930	fi
931
932
933	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
934	# DURCH OPTION -G MITGETEILT)
935	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
936	then
937	global_revision=`svnversion $source_path 2>/dev/null`
938	global_revision="Rev: $global_revision"
939	fi
940
941
942	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
943	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
944	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
945	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
946	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
947	if [[ -n $host && "$host" != $localhost ]]
948	then
949	do_batch=true
950	do_remote=true
951	case $host in
952	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
953	(*) printf "\n"
954	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
955	printf "\n is not available"
956	locat=nqs; (( iec = 0 )); exit;;
957	esac
958	else
959	host=$localhost
960	fi
961
962
963	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
964	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
965	then
966
967	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
968	if [[ ! -n $numprocs ]]
969	then
970	printf "\n"
971	printf "\n +++ option \"-K parallel\" requires additional specification"
972	printf "\n of the number of processors to be used by"
973	printf "\n mrun-option \"-X\" or by environment-variable"
974	printf "\n \"numprocs\" in the configuration file"
975	locat=numprocs; (( iec = 0 )); exit
976	fi
977
978	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
979	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
980	# GESAMTPROZESSORANZAHL IST
981	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
982	then
983	printf "\n"
984	printf "\n +++ option \"-T\" (tasks per node) is missing"
985	printf "\n set -T option or define tasks_per_node in the config file"
986	locat=tasks_per_node; (( iec = 0 )); exit
987	fi
988	if [[ $host != lcflow && $host != lcxt5m ]]
989	then
990	(( ival = $tasks_per_node ))
991	(( pes = numprocs ))
992	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
993	# then
994	# (( pes = pes - 1 ))
995	# fi
996	(( ii = pes / ival ))
997	if (( pes - ii * ival > 0 ))
998	then
999	printf "\n"
1000	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1001	printf "\n divisor of the total number of processors (option \"-X\")"
1002	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1003	locat=tasks_per_node; (( iec = 0 )); exit
1004	fi
1005	fi
1006
1007
1008	# IBMY HAT NUR EINEN KNOTEN
1009	if [[ $host = ibmy ]]
1010	then
1011	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1012	then
1013	printf "\n"
1014	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1015	printf "\n total number of processors (option \"-X\")"
1016	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1017	locat=tasks_per_node; (( iec = 0 )); exit
1018	fi
1019	fi
1020
1021
1022	# SETTINGS FOR SUBJOB-COMMAND
1023	TOPT="-T $tasks_per_node"
1024	OOPT="-O $threads_per_task"
1025
1026	# GESAMTZAHL DER KNOTEN BESTIMMEN
1027	if [[ "$tasks_per_node" != "" ]]
1028	then
1029	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1030	fi
1031
1032	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1033	# SETZEN
1034	if [[ $node_usage = default ]]
1035	then
1036	if [[ $host = ibms ]]
1037	then
1038	node_usage=shared
1039	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1040	then
1041	node_usage=singlejob
1042	else
1043	node_usage=not_shared
1044	fi
1045	fi
1046
1047	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1048	then
1049	printf "\n"
1050	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1051	printf "\n \"shared\" or \"not_shared\""
1052	locat=tasks_per_node; (( iec = 0 )); exit
1053	fi
1054
1055	fi
1056
1057	# PRUEFEN, OB HOSTFILE EXISTIERT
1058	if [[ -n $hostfile ]]
1059	then
1060	if [[ ! -f $hostfile ]]
1061	then
1062	printf "\n"
1063	printf "\n +++ hostfile \"$hostfile\" does not exist"
1064	locat=hostfile; exit
1065	fi
1066	fi
1067
1068	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1069	if [[ $host = ibmy && $do_remote = false ]]
1070	then
1071	if [[ ! -f $HOME/.rhosts ]]
1072	then
1073	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1074	printf "\n\n *** file:"
1075	printf "\n $HOME/.rhosts"
1076	printf "\n was created\n"
1077	fi
1078	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1079	then
1080	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1081	printf "\n\n *** file:"
1082	printf "\n $HOME/.rhosts"
1083	printf "\n was extended by the name of the current host\n"
1084	fi
1085	fi
1086
1087
1088	# Set default value for the maximum number of parallel io streams
1089	if [[ "$maximum_parallel_io_streams" = "" ]]
1090	then
1091	maximum_parallel_io_streams=$numprocs
1092	fi
1093
1094
1095	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1096	if [[ $queue = none ]]
1097	then
1098	case $host in
1099	(ibmh) queue=no_class;;
1100	(ibmkisti) queue=class.32plus;;
1101	(ibmy) queue=parallel;;
1102	(lckiaps) queue=normal;;
1103	(lckyoto) queue=ph;;
1104	(lcsgib) queue=testq;;
1105	(lcsgih) queue=testq;;
1106	(lctit) queue=S;;
1107	(nech) queue=none;;
1108	(necriam) queue=SP;;
1109	(unics) queue=unics;;
1110	esac
1111	fi
1112
1113
1114	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1115	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1116	# ERMITTELN
1117	(( i = 0 ))
1118	while (( i < iin ))
1119	do
1120	(( i = i + 1 ))
1121	(( maxcycle = 0 ))
1122
1123	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1124	if [[ "${actionin[$i]}" = di ]]
1125	then
1126	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1127	# REM-MASCHINE AUSWERTEN
1128	eval filename=${pathin[$i]}/${endin[$i]}
1129	else
1130	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1131	# REM-MASCHINE AUSWERTEN
1132	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1133	fi
1134	eval pathname=${pathin[$i]}
1135
1136	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1137	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1138	then
1139	filename_input=$filename
1140	fi
1141
1142	# PRUEFEN AUF VORHANDENSEIN
1143	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1144	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1145	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1146	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1147	then
1148	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1149	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1150	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1151	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1152	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1153	if [[ "${transin[$i]}" != "locopt" ]]
1154	then
1155	printf "\n\n +++ INPUT-file: "
1156	if [[ "${extin[$i]}" = "" ]]
1157	then
1158	printf "\n $filename"
1159	else
1160	printf "\n $filename.${extin[$i]}"
1161	fi
1162	printf "\n does not exist\n"
1163	locat=input; exit
1164	else
1165	transin[$i]="unavailable"
1166	fi
1167	else
1168
1169	# ZYKLUSNUMMER FESTSTELLEN
1170	ls -1 -d $filename > filelist 2>/dev/null
1171	ls -1 -d $filename.* >> filelist 2>/dev/null
1172	while read zeile
1173	do
1174	cycle=$(print $zeile \| cut -f2 -d".")
1175	if [[ "$cycle" = "$zeile" ]]
1176	then
1177	(( icycle = 0 ))
1178	elif [[ "$cycle" = "${extin[$i]}" ]]
1179	then
1180	(( icycle = 0 ))
1181	else
1182	(( icycle = $cycle ))
1183	fi
1184	if (( icycle > maxcycle ))
1185	then
1186	(( maxcycle = icycle ))
1187	file_to_be_used=$zeile
1188	fi
1189	done <filelist
1190	rm filelist
1191
1192	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1193	if (( maxcycle > 0 ))
1194	then
1195	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1196	then
1197	filename=${filename}.$maxcycle.${extin[$i]}
1198	else
1199	filename=${filename}.$maxcycle
1200	fi
1201	else
1202	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1203	then
1204	filename=${filename}.${extin[$i]}
1205	fi
1206	fi
1207
1208	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1209	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1210	absnamein[$i]=$filename
1211	if (( maxcycle > 0 ))
1212	then
1213	if [[ "${actionin[$i]}" = di ]]
1214	then
1215	frelin[$i]=${endin[$i]}.$maxcycle
1216	else
1217	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1218	fi
1219	else
1220	if [[ "${actionin[$i]}" = di ]]
1221	then
1222	frelin[$i]=${endin[$i]}
1223	else
1224	frelin[$i]=${afname}${endin[$i]}
1225	fi
1226	fi
1227
1228	fi
1229	done
1230
1231	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1232	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1233	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1234	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1235	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1236	(( i = 0 ))
1237	while (( i < iout ))
1238	do
1239	(( i = i + 1 ))
1240	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1241	then
1242	if [[ "${actionout[$i]}" = tr ]]
1243	then
1244	actionout[$i]=""
1245	elif [[ "${actionout[$i]}" = trpe ]]
1246	then
1247	actionout[$i]=pe
1248	elif [[ "${actionout[$i]}" = tra ]]
1249	then
1250	actionout[$i]=a
1251	fi
1252	(( maxcycle = 0 ))
1253	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1254	eval catalogname=${pathout[$i]}
1255	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1256	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1257	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1258	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1259	then
1260
1261	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1262	if cat /dev/null > $filename
1263	then
1264	rm $filename
1265	else
1266
1267	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1268	if [[ ! -d $catalogname ]]
1269	then
1270	if mkdir -p $catalogname
1271	then
1272	printf "\n\n *** directory:"
1273	printf "\n $catalogname"
1274	printf "\n was created\n"
1275	else
1276	printf "\n\n +++ OUTPUT-file:"
1277	printf "\n $filename"
1278	printf "\n cannot be created, because directory does not exist"
1279	printf "\n and cannot be created either"
1280	printf "\n"
1281	locat=output ; exit
1282	fi 2>/dev/null
1283	else
1284	printf "\n\n +++ OUTPUT-file:"
1285	printf "\n $filename"
1286	printf "\n cannot be created, although directory exists"
1287	printf "\n"
1288	locat=output ; exit
1289	fi
1290	fi 2>/dev/null
1291	else
1292
1293	# ZYKLUSNUMMER FESTSTELLEN
1294	ls -1 -d $filename > filelist 2>/dev/null
1295	ls -1 -d $filename.* >> filelist 2>/dev/null
1296	while read zeile
1297	do
1298	cycle=$(print $zeile \| cut -f2 -d".")
1299	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1300	then
1301	(( icycle = 1 ))
1302	else
1303	(( icycle = $cycle + 1 ))
1304	fi
1305	if (( icycle > maxcycle ))
1306	then
1307	(( maxcycle = icycle ))
1308	fi
1309	done <filelist
1310	rm filelist
1311	fi
1312
1313	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1314	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1315	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1316	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1317	if [[ "${actionout[$i]}" != a ]]
1318	then
1319	if (( maxcycle > 0 ))
1320	then
1321	filename=${filename}.$maxcycle
1322	if cat /dev/null > $filename
1323	then
1324	rm $filename
1325	else
1326	printf "\n +++ OUTPUT-file:"
1327	printf "\n $filename"
1328	printf "\n cannot be created"
1329	locat=output ; exit
1330	fi
1331	fi
1332	else
1333	(( maxcycle = maxcycle - 1 ))
1334	if (( maxcycle > 0 ))
1335	then
1336	filename=${filename}.$maxcycle
1337	fi
1338	fi
1339
1340	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1341	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1342	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1343	pathout[$i]=$filename
1344	if (( maxcycle > 0 ))
1345	then
1346	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1347	else
1348	frelout[$i]=${fname}${endout[$i]}
1349	fi
1350
1351	fi
1352	done
1353
1354
1355	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1356	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1357	then
1358	if [[ "$dvr_inc" = "" ]]
1359	then
1360	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1361	printf "\n This is required for the dvrp_graphics package.\n"
1362	locat=dvr; exit
1363	fi
1364	if [[ "$dvr_lib" = "" ]]
1365	then
1366	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1367	printf "\n This is required for the dvrp_graphics package.\n"
1368	locat=dvr; exit
1369	fi
1370	fi
1371
1372
1373	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1374	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1375	# UEBERSETZT ZU WERDEN)
1376	if [[ "$mainprog" = "" && "$executable" = "" ]]
1377	then
1378	printf "\n +++ neither main program nor executable defined"
1379	locat=source; exit
1380	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1381	then
1382	printf "\n +++ main program as well as executable defined"
1383	locat=source; exit
1384	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1385	then
1386	do_compile=false
1387	fi
1388
1389
1390	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1391	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1392	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1393	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1394	then
1395	rm -rf SOURCES_FOR_RUN_$fname
1396	mkdir SOURCES_FOR_RUN_$fname
1397	fi
1398
1399
1400	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1401	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1402	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1403	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1404	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1405	then
1406
1407	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1408
1409	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1410	then
1411
1412	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1413	source_list=""
1414	cd $source_path
1415
1416
1417	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1418	if [[ ! -d .svn ]]
1419	then
1420	printf "\n\n +++ source directory"
1421	printf "\n \"$source_path\" "
1422	printf "\n is not under control of \"subversion\"."
1423	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1424	fi
1425
1426
1427	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1428	Filenames=""
1429	svn status > tmp_mrun
1430	while read line
1431	do
1432	firstc=`echo $line \| cut -c1`
1433	if [[ $firstc = M \|\| $firstc = "?" ]]
1434	then
1435	Name=`echo "$line" \| cut -c8-`
1436	extension=`echo $Name \| cut -d. -f2`
1437	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1438	then
1439	Filenames="$Filenames "$Name
1440	fi
1441	fi
1442	done < tmp_mrun
1443
1444
1445	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1446	for dateiname in $Filenames
1447	do
1448	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1449	source_list=$source_list"$dateiname "
1450	done
1451
1452	cd - > /dev/null
1453
1454
1455	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1456	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1457	# VORHANDEN
1458	elif [[ "$source_list" != "" && $restart_run != true ]]
1459	then
1460
1461	cd $source_path
1462
1463	for filename in $source_list
1464	do
1465
1466	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1467	if [[ $(print $filename \| grep -c "/") != 0 ]]
1468	then
1469	printf "\n +++ source code file: $filename"
1470	printf "\n must not contain (\"/\") "
1471	locat=source; exit
1472	fi
1473
1474	if [[ ! -f $filename ]]
1475	then
1476	printf "\n +++ source code file: $filename"
1477	printf "\n does not exist"
1478	locat=source; exit
1479	else
1480	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1481	fi
1482
1483	done
1484
1485	cd - > /dev/null
1486
1487	fi
1488
1489
1490	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1491	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1492	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1493	if [[ $restart_run != true ]]
1494	then
1495
1496	if [[ ! -f "$source_path/$mainprog" ]]
1497	then
1498	printf "\n\n +++ main program: $mainprog"
1499	printf "\n does not exist in source directory"
1500	printf "\n \"$source_path\"\n"
1501	locat=source; exit
1502	else
1503	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1504	then
1505	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1506	source_list=${mainprog}" $source_list"
1507	fi
1508	fi
1509	fi
1510
1511
1512	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1513	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1514	if [[ "$restart_run" != true ]]
1515	then
1516	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1517	if [[ ! -f $makefile ]]
1518	then
1519	printf "\n +++ file \"$makefile\" does not exist"
1520	locat=make; exit
1521	else
1522	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1523	fi
1524	fi
1525
1526
1527	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1528	if [[ $restart_run != true && "$add_source_path" != "" ]]
1529	then
1530
1531	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1532	if [[ ! -d $add_source_path ]]
1533	then
1534	printf "\n\n +++ WARNING: additional source code directory"
1535	printf "\n \"$add_source_path\" "
1536	printf "\n does not exist or is not a directory."
1537	printf "\n No source code will be used from this directory!\n"
1538	add_source_path=""
1539	if [[ $silent == false ]]
1540	then
1541	sleep 3
1542	fi
1543	else
1544
1545	cd $add_source_path
1546	found=false
1547
1548	Names=$(ls -1 *.f90 2>&1)
1549	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1550	Names=$(ls -1 *.F90 2>&1)
1551	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1552	Names=$(ls -1 *.F 2>&1)
1553	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1554	Names=$(ls -1 *.f 2>&1)
1555	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1556	Names=$(ls -1 *.c 2>&1)
1557	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1558
1559	cd - > /dev/null
1560	cd SOURCES_FOR_RUN_$fname
1561
1562	# COPY MAKEFILE IF EXISTING
1563	if [[ -f $add_source_path/Makefile ]]
1564	then
1565	printf "\n\n *** user Makefile from directory"
1566	printf "\n \"$add_source_path\" is used \n"
1567	if [[ $silent == false ]]
1568	then
1569	sleep 1
1570	fi
1571	cp $add_source_path/Makefile .
1572	fi
1573
1574	for dateiname in $AddFilenames
1575	do
1576	if [[ -f $dateiname ]]
1577	then
1578	printf "\n +++ source code file \"$dateiname\" found in additional"
1579	printf "\n source code directory \"$add_source_path\" "
1580	printf "\n but was also given with option \"-s\" which means that it should be taken"
1581	printf "\n from directory \"$source_path\"."
1582	locat=source; exit
1583	fi
1584
1585	cp $add_source_path/$dateiname .
1586	source_list="$source_list $dateiname"
1587
1588	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1589	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1590	then
1591	printf "\n\n +++ user file \"$dateiname\" "
1592	printf "\n is not listed in Makefile \n"
1593	locat=source; exit
1594	else
1595
1596	# Default User-Interface von der Liste entfernen, falls Datei
1597	# ein User-Interface enthaelt
1598	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1599	# then
1600	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1601	# then
1602	# rm -rf user_interface.f90
1603	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1604	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1605	# printf "\n since a user-interface is found in file"
1606	# printf "\n \"$add_source_path/$dateiname\" \n"
1607	# sleep 3
1608	# else
1609	if [[ $found = false ]]
1610	then
1611	found=true
1612	printf "\n\n *** following user file(s) added to the"
1613	printf " files to be translated:\n "
1614	fi
1615	printf "$dateiname "
1616	if [[ $silent == false ]]
1617	then
1618	sleep 0.5
1619	fi
1620
1621	fi
1622	done
1623	[[ $found = true ]] && printf "\n"
1624	cd - > /dev/null
1625	fi
1626	fi
1627
1628
1629	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1630	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1631	if [[ $restart_run != true && -n $package_list ]]
1632	then
1633
1634	cd $source_path
1635
1636	for package in $package_list
1637	do
1638
1639	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1640
1641	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1642	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1643	# LIEFERT
1644	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1645
1646
1647	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1648	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1649	for source_list_name in $package_source_list
1650	do
1651	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1652	then
1653
1654	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1655	ending=`echo $source_list_name \| cut -f2 -d.`
1656	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1657	then
1658	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1659	source_list="$source_list $source_list_name"
1660	fi
1661	fi
1662	done
1663	done
1664
1665	cd - > /dev/null
1666	fi
1667
1668
1669	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1670	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1671	# if [[ "$restart_run" != true ]]
1672	# then
1673	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1674	# if [[ ! -f $makefile ]]
1675	# then
1676	# printf "\n +++ file \"$makefile\" does not exist"
1677	# locat=make; exit
1678	# else
1679	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1680	# fi
1681	# fi
1682
1683	fi # do_compile=true
1684
1685
1686	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1687	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1688	if [[ $do_compile = true ]]
1689	then
1690
1691	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1692	# ZUSAMMENSETZEN
1693	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1694	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1695	then
1696	cpp_options="${cpp_options},-D__ibm=__ibm"
1697	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1698	then
1699	cpp_options="$cpp_options -D__nec"
1700	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1701	then
1702	cpp_options="$cpp_options -D__lc"
1703	else
1704	cpp_options="$cpp_options -D__$localhost"
1705	fi
1706
1707	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1708	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1709	then
1710	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1711	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1712	else
1713	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1714	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1715	fi
1716
1717	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1718	if [[ -n $package_list ]]
1719	then
1720	for package in $package_list
1721	do
1722	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1723	then
1724	if [[ $package != "dvrp_graphics+1PE" ]]
1725	then
1726	cpp_options="${cpp_options},-D__$package=__$package"
1727	else
1728	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1729	export use_seperate_pe_for_dvrp_output=true
1730	fi
1731	else
1732	if [[ $package != "dvrp_graphics+1PE" ]]
1733	then
1734	cpp_options="$cpp_options -D__$package"
1735	else
1736	cpp_options="$cpp_options -D__dvrp_graphics"
1737	export use_seperate_pe_for_dvrp_output=true
1738	fi
1739	fi
1740	done
1741	fi
1742
1743	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1744	if [[ -n $cpp_opts ]]
1745	then
1746	for popts in $cpp_opts
1747	do
1748	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1749	then
1750	cpp_options="${cpp_options},-D__$popts=__$popts"
1751	else
1752	cpp_options="$cpp_options -D__$popts"
1753	fi
1754	done
1755	fi
1756
1757	else
1758
1759
1760	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1761	if [[ $do_remote = false ]]
1762	then
1763	if [[ ! -f $executable ]]
1764	then
1765	printf "\n +++ executable file: $executable"
1766	printf "\n does not exist"
1767	locat=executable; exit
1768	fi
1769	fi
1770	fi
1771
1772
1773	# JOBMODUS FESTSTELLEN
1774	if [[ "$ENVIRONMENT" = BATCH ]]
1775	then
1776	jobmo=BATCH
1777	else
1778	jobmo=INTERACTIVE
1779	fi
1780
1781
1782	# no interactive runs on lctit
1783	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1784	then
1785	printf "\n +++ no interactive runs allowed on host \"$host\" "
1786	printf "\n please submit batch job using mrun option \"-b\" \n"
1787	locat=normal; exit
1788	fi
1789
1790
1791	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1792	# DURCH BENUTZER ANDERWEITIG VEREINBART
1793	if [[ "$compiler_name" = "" ]]
1794	then
1795
1796	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1797	locat=compiler_name; exit
1798
1799	fi
1800
1801
1802	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1803	[[ $localhost = necriam ]] && compiler_name=mpif90
1804
1805
1806
1807	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1808	kennung=$RANDOM
1809	if [[ "$tmp_user_catalog" = "" ]]
1810	then
1811	if [[ $localhost = ibmh ]]
1812	then
1813	tmp_user_catalog=$SCRATCH
1814	elif [[ $localhost = nech ]]
1815	then
1816	tmp_user_catalog=$WRKSHR
1817	else
1818	tmp_user_catalog=/tmp
1819	fi
1820	fi
1821	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1822
1823
1824	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1825	# BESTIMMEN
1826	if [[ "$tmp_data_catalog" = "" ]]
1827	then
1828	if [[ $localhost = nech ]]
1829	then
1830	tmp_data_catalog=$WRKSHR/mrun_restart_data
1831	else
1832	tmp_data_catalog=/tmp/mrun_restart_data
1833	fi
1834	fi
1835
1836
1837	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1838	# ERSETZEN
1839	if [[ $do_remote = false && $do_compile = true ]]
1840	then
1841	eval fopts=\"$fopts\"
1842	eval lopts=\"$lopts\"
1843	fi
1844
1845
1846
1847	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1848	fopts="$fopts $netcdf_inc $dvr_inc"
1849	lopts="$lopts $netcdf_lib $dvr_lib"
1850	ROPTS="$ropts"
1851	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
1852	then
1853	XOPT="-X $numprocs"
1854	fi
1855
1856
1857
1858	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1859	# GRAMM BENOETIGT
1860	done=false
1861	while [[ $done = false ]]
1862	do
1863	cputime=$cpumax
1864	if (( $cputime == 0 ))
1865	then
1866	if [[ $do_batch = true ]]
1867	then
1868	printf "\n +++ cpu-time is undefined"
1869	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1870	printf "\n >>> "
1871	read cputime 1>/dev/null 2>&1
1872	else
1873	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1874	fi
1875	else
1876	done=true
1877	fi
1878	cpumax=$cputime
1879	done
1880
1881	(( minuten = cputime / 60 ))
1882	(( sekunden = cputime - minuten * 60 ))
1883
1884
1885	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1886	if [[ $do_batch = true ]]
1887	then
1888	done=false
1889	while [[ $done = false ]]
1890	do
1891	if (( memory == 0 ))
1892	then
1893	printf "\n +++ memory demand is undefined"
1894	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1895	printf "\n >>> "
1896	read memory 1>/dev/null 2>&1
1897	else
1898	done=true
1899	fi
1900	done
1901	fi
1902
1903
1904	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1905	if [[ $do_remote = true && -z $remote_username ]]
1906	then
1907	while [[ -z $remote_username ]]
1908	do
1909	printf "\n +++ username on remote host \"$host\" is undefined"
1910	printf "\n >>> Please type username:"
1911	printf "\n >>> "
1912	read remote_username
1913	done
1914	mc="$mc -u$remote_username"
1915	fi
1916
1917	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1918	if [[ "$login_init_cmd" != "" ]]
1919	then
1920	export init_cmds="${login_init_cmd};"
1921	fi
1922
1923
1924	# set module load command and export for subjob
1925	if [[ "$modules" != "" ]]
1926	then
1927	if [[ $host = lctit ]]
1928	then
1929	export module_calls=". $modules"
1930	else
1931	export module_calls="module load ${modules};"
1932	fi
1933	fi
1934
1935	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1936	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1937	then
1938	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1939	then
1940	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1941	fi
1942	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1943	# then
1944	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1945	# echo "*** module_calls = $module_calls"
1946	# fi
1947	fi
1948
1949
1950	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1951	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1952	then
1953	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1954	then
1955	mpilib=mpt
1956	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1957	then
1958	mpilib=mvapich
1959	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1960	then
1961	mpilib=impi
1962	fi
1963	fi
1964
1965
1966
1967	###########################################################################
1968	# HEADER-AUSGABE
1969	###########################################################################
1970
1971
1972	calltime=$(date)
1973	printf "\n"
1974	# [[ $silent = false ]] && clear
1975	printf "#--------------------------------------------------------------# \n"
1976	printf "\| $version$calltime \| \n"
1977	printf "\| \| \n"
1978	spalte1="called on:"; spalte2=$localhost_realname
1979	printf "\| $spalte1$spalte2 \| \n"
1980	if [[ $local_compile = false ]]
1981	then
1982	if [[ $do_remote = true ]]
1983	then
1984	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1985	else
1986	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1987	fi
1988	else
1989	spalte1="compiling test only!"; spalte2=""
1990	fi
1991	printf "\| $spalte1$spalte2 \| \n"
1992	if [[ -n $numprocs ]]
1993	then
1994	spalte1="number of PEs:"; spalte2=$numprocs
1995	printf "\| $spalte1$spalte2 \| \n"
1996	fi
1997	if [[ -n $tasks_per_node ]]
1998	then
1999	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2000	printf "\| $spalte1$spalte2 \| \n"
2001	fi
2002	if [[ $maximum_parallel_io_streams != $numprocs ]]
2003	then
2004	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2005	printf "\| $spalte1$spalte2 \| \n"
2006	fi
2007	if [[ $use_openmp = true ]]
2008	then
2009	spalte1="threads per task:"; spalte2="$threads_per_task"
2010	printf "\| $spalte1$spalte2 \| \n"
2011	fi
2012	printf "\| \| \n"
2013	if [[ $do_compile = true ]]
2014	then
2015	if [[ "$mopts" != "" ]]
2016	then
2017	spalte1="make options:"; spalte2=$mopts
2018	printf "\| $spalte1$spalte2 \| \n"
2019	zeile=$(echo "$mopts" \| cut -c41-)
2020	while [[ "$zeile" != "" ]]
2021	do
2022	spalte1=""
2023	spalte2=$zeile
2024	printf "\| $spalte1$spalte2 \| \n"
2025	zeile=$(echo "$zeile" \| cut -c41-)
2026	done
2027	fi
2028
2029	spalte1="cpp directives:"; spalte2=$cpp_options
2030	printf "\| $spalte1$spalte2 \| \n"
2031	zeile=$(echo "$cpp_options" \| cut -c41-)
2032	while [[ "$zeile" != "" ]]
2033	do
2034	spalte1=""
2035	spalte2=$zeile
2036	printf "\| $spalte1$spalte2 \| \n"
2037	zeile=$(echo "$zeile" \| cut -c41-)
2038	done
2039
2040	spalte1="compiler options:"; spalte2="$fopts"
2041	printf "\| $spalte1$spalte2 \| \n"
2042	zeile=$(echo "$fopts" \| cut -c41-)
2043	while [[ "$zeile" != "" ]]
2044	do
2045	spalte1=""
2046	spalte2=$zeile
2047	printf "\| $spalte1$spalte2 \| \n"
2048	zeile=$(echo "$zeile" \| cut -c41-)
2049	done
2050
2051	spalte1="linker options:"; spalte2=$lopts
2052	printf "\| $spalte1$spalte2 \| \n"
2053	zeile=$(echo "$lopts" \| cut -c41-)
2054	while [[ "$zeile" != "" ]]
2055	do
2056	spalte1=""
2057	spalte2=$zeile
2058	printf "\| $spalte1$spalte2 \| \n"
2059	zeile=$(echo "$zeile" \| cut -c41-)
2060	done
2061
2062	spalte1="modules to be load:"; spalte2=$modules
2063	printf "\| $spalte1$spalte2 \| \n"
2064	zeile=$(echo "$modules" \| cut -c41-)
2065	while [[ "$zeile" != "" ]]
2066	do
2067	spalte1=""
2068	spalte2=$zeile
2069	printf "\| $spalte1$spalte2 \| \n"
2070	zeile=$(echo "$zeile" \| cut -c41-)
2071	done
2072
2073	spalte1="main program":; spalte2=$mainprog
2074	printf "\| $spalte1$spalte2 \| \n"
2075	else
2076	spalte1=executable:; spalte2=$executable
2077	printf "\| $spalte1$spalte2 \| \n"
2078	fi
2079	printf "\| \| \n"
2080	spalte1="base name of files":; spalte2=$fname
2081	printf "\| $spalte1$spalte2 \| \n"
2082	if [[ $fname != $afname ]]
2083	then
2084	spalte1="base name of input files":; spalte2=$afname
2085	printf "\| $spalte1$spalte2 \| \n"
2086	fi
2087	spalte1="INPUT control list":; spalte2=$input_list
2088	printf "\| $spalte1$spalte2 \| \n"
2089	spalte1="OUTPUT control list":; spalte2=$output_list
2090	printf "\| $spalte1$spalte2 \| \n"
2091
2092	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2093	then
2094	spalte1="memory demand / PE":; spalte2="$memory MB"
2095	printf "\| $spalte1$spalte2 \| \n"
2096	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2097	printf "\| $spalte1$spalte2 \| \n"
2098	fi
2099
2100	if [[ $do_compile = true ]]
2101	then
2102	printf "\| \| \n"
2103	printf "\| Files to be compiled: \| \n"
2104	zeile=$source_list
2105	while [[ "$zeile" != "" ]]
2106	do
2107	spalte3=$zeile
2108	printf "\| $spalte3 \| \n"
2109	zeile=$(echo "$zeile" \| cut -c61-)
2110	done
2111	fi
2112	printf "#--------------------------------------------------------------#"
2113
2114
2115
2116	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2117	if [[ $do_trace = true ]]
2118	then
2119	(( i = 0 ))
2120	while (( i < iin ))
2121	do
2122	(( i = i + 1 ))
2123	if (( i == 1 ))
2124	then
2125	printf "\n\n >>> INPUT-file assignments:\n"
2126	fi
2127	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2128	done
2129	(( i = 0 ))
2130	while (( i < iout ))
2131	do
2132	(( i = i + 1 ))
2133	if (( i == 1 ))
2134	then
2135	printf "\n\n >>> OUTPUT-file assignments:\n"
2136	fi
2137	printf "\n ${localout[$i]} : ${pathout[$i]}"
2138	done
2139	(( i = 0 ))
2140	while (( i < iic ))
2141	do
2142	(( i = i + 1 ))
2143	if (( i == 1 ))
2144	then
2145	printf "\n\n >>> INPUT-commands:\n"
2146	fi
2147	printf "\n ${in_command[$i]}"
2148	done
2149	(( i = 0 ))
2150	while (( i < ioc ))
2151	do
2152	(( i = i + 1 ))
2153	if (( i == 1 ))
2154	then
2155	printf "\n\n >>> OUTPUT-commands:\n"
2156	fi
2157	printf "\n ${out_command[$i]}"
2158	done
2159	fi
2160
2161
2162	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2163	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2164	then
2165	antwort=dummy
2166	printf "\n\n"
2167	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2168	do
2169	printf " >>> everything o.k. (y/n) ? "
2170	read antwort
2171	done
2172	if [[ $antwort = n \|\| $antwort = N ]]
2173	then
2174	locat=user_abort; (( iec = 0 )); exit
2175	fi
2176	if [[ $do_batch = true ]]
2177	then
2178	printf " >>> batch-job will be created and submitted"
2179	else
2180	if [[ $local_compile = false ]]
2181	then
2182	printf " >>> MRUN will now continue to execute on this machine"
2183	else
2184	printf " >>> a test compilation will now be carried out on this machine"
2185	fi
2186	fi
2187	fi
2188
2189	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2190
2191	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2192	check_depository="${working_directory}/trunk/UTIL"
2193	check_sources="${working_directory}/tmp_check_namelist_files"
2194	skip_check=false
2195
2196	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2197	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2198	then
2199	skip_check=true
2200	reason="run on remote host or parameter file check has not been compiled."
2201	fi
2202	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2203	then
2204	skip_check=true
2205	reason="parameter file check has not been compiled."
2206	fi
2207
2208	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2209	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2210	then
2211	skip_check=true
2212	reason="serial run."
2213	fi
2214
2215	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2216	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2217	if [[ $check_namelist_files == false ]]
2218	then
2219	skip_check=true
2220	reason="-z option set."
2221	fi
2222
2223	if [[ $fromhost != $localhost ]]
2224	then
2225	skip_check=true
2226	reason="submitting host is local host."
2227	fi
2228
2229	if [[ $run_coupled_model == true ]]
2230	then
2231	skip_check=true
2232	reason="coupled run."
2233	fi
2234
2235	if [[ $restart_run == true ]]
2236	then
2237	skip_check=true
2238	reason="restart run."
2239
2240	fi
2241
2242	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2243	((last_char = `echo $filename_input \| wc -c` - 1))
2244	last_char=`echo $filename_input \|cut -c$last_char`
2245	if [[ "$last_char" == "f" ]]
2246	then
2247	skip_check=true
2248	reason="restart run."
2249	fi
2250
2251	if [[ $skip_check == false ]]
2252	then
2253
2254	tmp_check=${working_directory}/tmp_check
2255
2256	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2257	# NOT NECESSARILY REQUIRED
2258	line=""
2259	found=false
2260	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2261	while read line1
2262	do
2263	line="$line1"
2264	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2265	then
2266	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2267	found=true
2268	fi
2269	done < $tmp_check
2270
2271	if [[ $found = false ]]
2272	then
2273	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2274	fi
2275
2276	rm -rf ${working_directory}/tmp_check
2277
2278	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2279	for item in $input_list
2280	do
2281	if [[ "$item" == "restart" ]]
2282	then
2283	check_restart=1
2284	else
2285	check_restart=0
2286	fi
2287	done
2288
2289	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2290	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2291	then
2292	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2293	locat=check_namelist; exit
2294	fi
2295
2296	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2297	if [[ $check_restart == 1 ]]
2298	then
2299
2300
2301
2302	filenamef="${filename_input}f"
2303	if [[ ! -f $filenamef ]]
2304	then
2305	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2306	check_restart=0
2307	answer=dummy
2308	printf "\n\n"
2309
2310	if [[ $silent == false ]]
2311	then
2312	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2313	do
2314	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2315	read answer
2316	done
2317	if [[ $answer = a \|\| $answer = A ]]
2318	then
2319	printf "\n +++ Aborting...."
2320	locat=normal; exit
2321	fi
2322	fi
2323	else
2324	check_restart=1
2325	fi
2326	fi
2327
2328	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2329	mkdir $check_sources
2330	cd $check_sources
2331
2332
2333	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2334	if [[ -d $add_source_path ]]
2335	then
2336	printf "\n\n *** copying files from $check_depository"
2337	cp $check_depository/check_namelist_files.tar ./
2338
2339	printf "\n\n *** untar of makefile and source files in $check_sources"
2340	tar -xf check_namelist_files.tar > /dev/null 2>&1
2341
2342	printf "\n\n *** adding user code."
2343	cp $add_source_path/* ./
2344	touch check_namelist_files.f90
2345
2346	# GET COMPILER OPTIONS AND PERFORM MAKE
2347	printf "\n\n *** compiling code if necessary...\n"
2348
2349	# workaround for batch jobs on local machine (lcxe6)
2350	if [[ $do_batch == true && $do_remote == false ]]
2351	then
2352	eval $init_cmds
2353	fi
2354
2355	# GET CHECK OPTIONS
2356	line=""
2357	found=false
2358
2359	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2360
2361	while read line1
2362	do
2363
2364	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2365	then
2366	line="$line1"
2367	fi
2368
2369	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2370	then
2371	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2372	line="$line "
2373	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2374	found=true
2375	fi
2376
2377	done < $tmp_check
2378	copts_check="$copts_check -D__check -D__parallel"
2379
2380	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2381
2382	# GET MAKE OUTPUT
2383	if [[ $? != 0 ]]
2384	then
2385	printf "\n +++ error during make."
2386	answer=dummy
2387	printf "\n\n"
2388	if [[ $silent == false ]]
2389	then
2390	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2391	do
2392	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2393	read answer
2394	done
2395	if [[ $answer = a \|\| $answer = A ]]
2396	then
2397	printf "\n +++ Aborting..."
2398	rm -rf $check_sources
2399	locat=normal; exit
2400	else
2401	skip_check=true
2402	fi
2403	else
2404	skip_check=true
2405	fi
2406	fi
2407	else
2408	cp $PALM_BIN/check_namelist_files.x ./
2409	fi
2410
2411	cp $filename_input ./PARIN
2412	if [[ $check_restart == 1 ]]
2413	then
2414	cp $filenamef ./PARINF
2415	fi
2416
2417	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2418	then
2419	printf "\n *** adding topography data"
2420	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2421
2422	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2423	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2424	# WHICH REQUIRE SUFFICIENT MEMORY
2425	ulimit -s unlimited
2426	fi
2427
2428	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2429	cat > ENVPAR << %%END%%
2430	&envpar run_identifier = '$fname', host = '$host',
2431	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2432	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2433	maximum_cpu_time_allowed = ${cpumax}.,
2434	revision = '$global_revision',
2435	local_dvrserver_running = $local_dvrserver_running /
2436
2437	%%END%%
2438
2439	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2440	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2441	printf "\n +++ WARNING: check_namelist_files.x not found."
2442	answer=dummy
2443	printf "\n\n"
2444
2445	if [[ $silent == false ]]
2446	then
2447	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2448	do
2449	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2450	read answer
2451	done
2452	if [[ $answer = a \|\| $answer = A ]]
2453	then
2454	printf "\n +++ Aborting..."
2455	rm -rf $check_sources
2456	locat=normal; exit
2457	else
2458	printf "\n *** skipping parameter file check."
2459
2460	fi
2461	fi
2462
2463	elif [[ $skip_check == false ]]
2464	then
2465	# STARTING THE PARAMETER FILE CHECK
2466	printf "\n\n *** starting parameter file check..."
2467
2468	# CHECKING THE P3D FILE
2469	printf "\n\n (1) checking $filename_input"
2470	echo "$numprocs 0 0" > VARIN
2471	errors=`./check_namelist_files.x < VARIN 2>&1`
2472
2473	check_error=false
2474	if [[ "$errors" == "" ]]
2475	then
2476	printf " --> o.k."
2477	else
2478	printf " --> failed."
2479	check_error=true
2480	printf "\n\n $errors"
2481	fi
2482
2483	# CHECKING THE PD3F FILE IF NECESSARY
2484	if [[ $check_restart == 1 && $check_error == false ]]
2485	then
2486	printf "\n\n (2) checking $filenamef"
2487
2488	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2489	found=false
2490	cat PARINF\|while read line
2491	do
2492	line=$(echo $line\|sed 's/ //g')
2493	if [[ $line == "&inipar" ]]
2494	then
2495	start_search=true
2496	fi
2497
2498	if [[ $start_search == true ]]
2499	then
2500	if [[ $line == "initializing_actions='read_restart_data'" ]]
2501	then
2502	found=true
2503	break
2504	fi
2505	fi
2506
2507	if [[ $line == "/" ]]
2508	then
2509	start_search=false
2510	fi
2511
2512	done
2513
2514	if [[ $found = false ]]
2515	then
2516	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2517	printf "\n in &inipar list in $fname$p3df_suffix."
2518	rm -rf $check_sources
2519	locat=check_namelist; exit
2520	fi
2521
2522	# READ max_user_pr FROM FILES
2523	if [[ -f parin_for_check ]]
2524	then
2525	read max_pr_user < parin_for_check
2526	else
2527	max_user_pr=0
2528	fi
2529
2530	echo "$numprocs 1 $max_pr_user" > VARIN
2531	errors=`./check_namelist_files.x < VARIN 2>&1`
2532
2533	if [[ "$errors" == "" ]]
2534	then
2535	printf " --> o.k."
2536	else
2537	printf " --> failed."
2538	check_error=true
2539	printf "\n\n $errors"
2540	fi
2541	fi
2542
2543	# REPORT ERRORS AND CONTINUE/EXIT
2544	if [[ $check_error == true ]]
2545	then
2546	printf "\n +++ errors found in the parameter file!\n"
2547	answer=dummy
2548	printf "\n\n"
2549
2550	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2551	do
2552	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2553	read answer
2554	done
2555
2556	if [[ $answer = a \|\| $answer = A ]]
2557	then
2558	printf "\n +++ Aborting..."
2559	rm -rf $check_sources
2560	locat=normal; exit
2561	fi
2562	else
2563	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2564	fi
2565	rm -rf $check_sources
2566	fi
2567	else
2568	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2569	fi
2570
2571	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2572	rm -rf $check_sources
2573	cd $working_directory
2574
2575
2576	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2577	# CHENDE AKTIONEN DURCHGEFUEHRT
2578	if [[ $do_batch = false ]]
2579	then
2580
2581
2582	# TEMPORAEREN KATALOG ERZEUGEN
2583	mkdir -p $TEMPDIR
2584	chmod go+rx $TEMPDIR
2585	tmpcreate=true
2586
2587	# set striping on lustre file system
2588	# if [[ $localhost = lcsgih ]]
2589	# then
2590	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2591	# lfs getstripe $TEMPDIR
2592	# fi
2593
2594
2595	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2596	# TEMPORAERES VERZEICHNIS KOPIEREN
2597	if [[ $do_compile = true ]]
2598	then
2599
2600	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2601	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2602	if [[ $localhost = nech ]]
2603	then
2604	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2605	if mkdir -p $TEMPDIR_COMPILE
2606	then
2607	printf "\n *** \"$TEMPDIR_COMPILE\" "
2608	printf "\n is generated as temporary directory for cross compiling\n"
2609	else
2610	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2611	printf "\n needed for cross compilation failed"
2612	locat=compile
2613	exit
2614	fi
2615	else
2616	TEMPDIR_COMPILE=$TEMPDIR
2617	fi
2618
2619
2620	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2621	line=""
2622	grep "%depository_path" $config_file > tmp_mrun
2623	while read line
2624	do
2625	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2626	then
2627	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2628	then
2629	global_depository_path=`echo $line \| cut -d" " -s -f2`
2630	fi
2631	fi
2632	done < tmp_mrun
2633
2634	line=""
2635	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2636	while read line
2637	do
2638	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2639	then
2640	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2641	then
2642	local_depository_path=`echo $line \| cut -d" " -s -f2`
2643	fi
2644	fi
2645	done < tmp_mrun
2646
2647	if [[ "$local_depository_path" = "" ]]
2648	then
2649	if [[ "$global_depository_path" != "" ]]
2650	then
2651	local_depository_path=$global_depository_path
2652	else
2653	printf "\n\n +++ no depository path found in configuration file"
2654	printf "\n for local host \"$localhost\" "
2655	printf "\n please set \"\%depository_path\" in configuration file\n"
2656	locat=config_file; exit
2657	fi
2658	fi
2659	eval local_depository_path=$local_depository_path
2660	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2661	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2662
2663
2664	basename=`print $mainprog \| cut -f1 -d"."`
2665	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2666	if [[ ! -f $make_depository ]]
2667	then
2668	printf "\n"
2669	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2670	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2671	else
2672	cp $make_depository $TEMPDIR_COMPILE
2673	cd $TEMPDIR_COMPILE
2674	tar -xf $make_depository > /dev/null 2>&1
2675	cd - > /dev/null
2676	fi
2677
2678	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2679
2680	else
2681
2682	cp $executable ${TEMPDIR}/a.out
2683
2684	fi
2685
2686
2687	# WECHSEL IN TEMPORAEREN KATALOG
2688	cd $TEMPDIR
2689	printf "\n *** changed to temporary directory: $TEMPDIR"
2690
2691
2692	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2693	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2694	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2695	# ERMITTELN
2696	(( i = 0 ))
2697	while (( i < iout ))
2698	do
2699	(( i = i + 1 ))
2700	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2701	then
2702	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2703	else
2704	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2705	fi
2706	done
2707
2708
2709	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2710	if [[ $do_compile = true ]]
2711	then
2712
2713
2714	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2715	printf "\n\n\n *** compilation starts \n$striche\n"
2716	printf " *** compilation with make using following options:\n"
2717	printf " make depository: $make_depository"
2718	if [[ "$mopts" != "" ]]
2719	then
2720	printf " make options: $mopts\n"
2721	fi
2722	printf " compilername: $compiler_name\n"
2723	printf " compiler options: $fopts\n"
2724	printf " preprocessor directives: $cpp_options \n"
2725	printf " linker options: $lopts \n"
2726	if [[ "$modules" != "" ]]
2727	then
2728	printf " modules to be load: $modules \n"
2729	fi
2730	printf " source code files: $source_list \n"
2731
2732	if [[ $localhost = nech ]]
2733	then
2734	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2735	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2736	cp $TEMPDIR_COMPILE/a.out .
2737	[[ $? != 0 ]] && compile_error=true
2738	rm -rf $TEMPDIR_COMPILE
2739	elif [[ $localhost = ibmh ]]
2740	then
2741	printf " compiler is called via ssh on \"plogin1\" \n"
2742	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2743	[[ ! -f a.out ]] && compile_error=true
2744	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2745	elif [[ $localhost = lcsgib ]]
2746	then
2747	printf " compiler is called via ssh on \"bicegate0\" \n"
2748	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2749	[[ ! -f a.out ]] && compile_error=true
2750	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2751	elif [[ $localhost = lcsgih ]]
2752	then
2753	printf " compiler is called via ssh on \"hicegate0\" \n"
2754	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2755	[[ ! -f a.out ]] && compile_error=true
2756	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2757	elif [[ $localhost = lcflow ]]
2758	then
2759	printf " compiler is called via ssh on \"flow\" \n"
2760	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2761	[[ ! -f a.out ]] && compile_error=true
2762	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2763	else
2764	[[ "$init_cmds" != "" ]] && eval $init_cmds
2765	[[ "$module_calls" != "" ]] && eval $module_calls
2766	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2767
2768	fi
2769
2770	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2771	then
2772	printf "\n +++ error occured while compiling or linking"
2773	locat=compile
2774
2775	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2776	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2777	# then
2778	exit
2779	# else
2780	# locat=normal
2781	# fi
2782	else
2783	printf "$striche\n *** compilation finished \n"
2784	fi
2785	fi
2786
2787
2788	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2789	if [[ $local_compile = true ]]
2790	then
2791	cd $HOME
2792	rm -rf $TEMPDIR
2793	locat=local_compile; exit
2794	fi
2795
2796
2797	# BEREITSTELLEN DER INPUT-DATEIEN
2798	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2799	(( i = 0 ))
2800	while (( i < iin ))
2801	do
2802	(( i = i + 1 ))
2803	if (( i == 1 ))
2804	then
2805	printf "\n\n *** providing INPUT-files:\n$striche"
2806	fi
2807
2808
2809	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2810	if [[ "${transin[$i]}" = unavailable ]]
2811	then
2812	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2813	then
2814	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2815	printf "\n is not available!"
2816	else
2817	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2818	printf "\n is not available!"
2819	fi
2820	continue
2821	fi
2822
2823	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2824	files_for_pes=false; datentyp=file
2825	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2826	then
2827	files_for_pes=true; datentyp=directory
2828	actionin[$i]=""
2829	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2830	then
2831	actionin[$i]=""
2832	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2833	then
2834	files_for_pes=true; datentyp=directory
2835	actionin[$i]="ar"
2836	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2837	then
2838	actionin[$i]="ar"
2839	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2840	then
2841	files_for_pes=true; datentyp=directory
2842	actionin[$i]="fl"
2843	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2844	then
2845	actionin[$i]="fl"
2846	fi
2847
2848	if [[ $files_for_pes = true ]]
2849	then
2850	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2851	else
2852	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2853	fi
2854
2855	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2856	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2857	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2858	# SERVER ZU HOLEN
2859	if [[ "${actionin[$i]}" = fl ]]
2860	then
2861	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2862	if [[ $files_for_pes = false ]]
2863	then
2864	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2865	then
2866	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2867	got_tmp[$i]=true
2868	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2869	then
2870	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2871	printf "\n *** trying to use backup copy in \"$WORK\" "
2872	cp $WORK/${frelin[$i]} ${localin[$i]}
2873	else
2874	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2875	printf "\n or \"$tmp_data_catalog\" does not exist!"
2876	printf "\n *** trying to get copy from archive"
2877	actionin[$i]=ar
2878	fi
2879	else
2880	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2881	then
2882	mkdir ${localin[$i]}
2883	cd $tmp_data_catalog/${frelin[$i]}
2884	for file in $(ls *)
2885	do
2886	ln $file $TEMPDIR/${localin[$i]}
2887	done
2888	cd $TEMPDIR
2889	got_tmp[$i]=true
2890	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2891	then
2892	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2893	printf "\n *** trying to use backup copy in \"$WORK\" "
2894	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2895	else
2896	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2897	printf "\n or \"$tmp_data_catalog\" does not exist!"
2898	printf "\n *** trying to get copy from archive"
2899	actionin[$i]=ar
2900	fi
2901	fi
2902	fi
2903
2904
2905	# DATEI LIEGT AUF ARCHIV-SERVER
2906	if [[ "${actionin[$i]}" = ar ]]
2907	then
2908
2909	if [[ $files_for_pes = false ]]
2910	then
2911	printf "\n file will be restored from archive-system ($archive_system)!"
2912	else
2913	printf "\n directory will be restored from archive-system ($archive_system)!"
2914	fi
2915
2916	file_restored=false
2917
2918	if [[ $archive_system = asterix ]]
2919	then
2920	do_stagein=true
2921	(( stagein_anz = 0 ))
2922	while [[ $do_stagein = true ]]
2923	do
2924	if [[ $files_for_pes = false ]]
2925	then
2926	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2927	else
2928	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2929	fi
2930	cat STAGEIN_OUTPUT
2931	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2932	then
2933	file_restored=true
2934	do_stagein=false
2935	else
2936	(( stagein_anz = stagein_anz + 1 ))
2937	if (( stagein_anz == 10 ))
2938	then
2939	printf "\n +++ stagein stoped after 10 tries"
2940	locat=stage
2941	exit
2942	fi
2943	printf "\n +++ restoring from archive failed, trying again:"
2944	sleep 900
2945	fi
2946	done
2947	elif [[ $archive_system = DMF ]]
2948	then
2949	if [[ $files_for_pes = false ]]
2950	then
2951	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2952	locat=DMF
2953	exit
2954	else
2955	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2956	cp -r $ARCHIVE/${frelin[$i]} $PWD
2957	file_restored=true
2958	fi
2959	elif [[ $archive_system = tivoli ]]
2960	then
2961	if [[ $files_for_pes = false ]]
2962	then
2963	if [[ $localhost = lcsgih ]]
2964	then
2965	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2966	else
2967	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2968	fi
2969	else
2970	(( inode = 0 ))
2971	while (( inode < nodes ))
2972	do
2973	if [[ $localhost = lcsgih ]]
2974	then
2975	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2976	else
2977	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2978	fi
2979	(( inode = inode + 1 ))
2980	done
2981	fi
2982	file_restored=true
2983	elif [[ $archive_system = ut ]]
2984	then
2985	if [[ $files_for_pes = false ]]
2986	then
2987	cp $UT/${frelin[$i]} .
2988	else
2989	(( inode = 0 ))
2990	while (( inode < nodes ))
2991	do
2992	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2993	(( inode = inode + 1 ))
2994	done
2995	fi
2996	file_restored=true
2997	else
2998	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2999	locat=rearchive
3000	exit
3001	fi
3002
3003	if [[ $file_restored = true ]]
3004	then
3005
3006	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3007	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3008	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3009	if [[ $files_for_pes = false ]]
3010	then
3011	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3012	else
3013	mkdir $tmp_data_catalog/${frelin[$i]}
3014	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3015	fi
3016	got_tmp[$i]=true
3017
3018	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3019	mv ${frelin[$i]} ${localin[$i]}
3020
3021	fi
3022	fi
3023
3024
3025	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3026	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3027	then
3028
3029	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3030	then
3031
3032	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3033	printf "\n file will be provided for $numprocs processors"
3034	mkdir ${localin[$i]}
3035	ival=$numprocs
3036	(( ii = 0 ))
3037	while (( ii <= ival-1 ))
3038	do
3039	if (( ii < 10 ))
3040	then
3041	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3042	elif (( ii < 100 ))
3043	then
3044	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3045	elif (( ii < 1000 ))
3046	then
3047	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3048	else
3049	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3050	fi
3051	(( ii = ii + 1 ))
3052	done
3053
3054	else
3055
3056	if [[ $files_for_pes = true ]]
3057	then
3058
3059	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3060	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3061	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3062	# PER MOVE UMBENANNT WERDEN
3063	printf "\n providing $numprocs files for the respective processors"
3064	mkdir ${localin[$i]}
3065	if [[ $link_local_input = true ]]
3066	then
3067	printf " using ln -f\n"
3068	cd ${absnamein[$i]}
3069	for file in $(ls *)
3070	do
3071	ln -f $file ${localin[$i]}
3072	done
3073	cd $TEMPDIR
3074	fi
3075	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3076	if [[ ! -f "${localin[$i]}/_0000" ]]
3077	then
3078	if [[ $link_local_input = true ]]
3079	then
3080	printf " ln failed for .../_0000, using cp...\n"
3081	fi
3082	cp -r ${absnamein[$i]}/* ${localin[$i]}
3083	fi
3084
3085	else
3086	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3087	if [[ $link_local_input = true ]]
3088	then
3089	printf " using ln -f\n"
3090	ln -f ${absnamein[$i]} ${localin[$i]}
3091	fi
3092	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3093	if [[ ! -f "${localin[$i]}" ]]
3094	then
3095	if [[ $link_local_input = true ]]
3096	then
3097	printf " ln failed, using cp...\n"
3098	fi
3099	cp ${absnamein[$i]} ${localin[$i]}
3100	fi
3101	fi
3102	fi
3103	fi
3104
3105	done
3106	if (( i != 0 ))
3107	then
3108	printf "\n$striche\n *** all INPUT-files provided \n"
3109	fi
3110
3111
3112	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3113	(( i = 0 ))
3114	while (( i < iic ))
3115	do
3116	(( i = i + 1 ))
3117	if (( i == 1 ))
3118	then
3119	printf "\n\n *** execution of INPUT-commands:\n$striche"
3120	fi
3121	printf "\n >>> ${in_command[$i]}"
3122	eval ${in_command[$i]}
3123	if (( i == iic ))
3124	then
3125	printf "\n$striche\n"
3126	fi
3127	done
3128
3129
3130	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3131	cpurest=${cpumax}.
3132
3133
3134	# START DVR STREAMING SERVER
3135	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3136	then
3137	if [[ "$dvr_server" != "" ]]
3138	then
3139
3140	printf "\n\n *** preparing the dvr streaming server configuration file"
3141
3142	# Check, if a dvr server is already running
3143	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3144	if [[ "$running_dvrserver_id" != "" ]]
3145	then
3146
3147	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3148	printf "\n This server is used instead starting a new one!"
3149	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3150
3151	else
3152
3153	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3154	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3155	then
3156	cp ${PALM_BIN}/.dvrserver.config .
3157
3158	# Entering the BASEDIR, UID and GID into this file
3159	user_id=`id -u`
3160	group_id=`id -g`
3161	# & is needed as seperator, because TEMPDIR contains /
3162	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3163	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3164	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3165	mv .dvrserver.3 .dvrserver.config
3166	rm .dvrserver.1 .dvrserver.2
3167
3168	# Start dvr server in background, get his id and print on terminal
3169	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3170	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3171	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3172	local_dvrserver_running=.TRUE.
3173	else
3174	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3175	printf "\n \"$PALM_BIN\" "
3176	locat=dvr
3177	exit
3178	fi
3179
3180	fi
3181
3182	else
3183	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3184	fi
3185	fi
3186
3187
3188	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3189	# LESEN VON PALM)
3190	cat > ENVPAR << %%END%%
3191	&envpar run_identifier = '$fname', host = '$localhost',
3192	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3193	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3194	maximum_cpu_time_allowed = ${cpumax}.,
3195	revision = '$global_revision',
3196	local_dvrserver_running = $local_dvrserver_running /
3197
3198	%%END%%
3199
3200
3201	# PROGRAMMSTART
3202	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3203	PATH=$PATH:$TEMPDIR
3204
3205	# MPI debug option (argument checking, slows down execution due to increased latency)
3206	if [[ "$mpi_debug" = true ]]
3207	then
3208	export MPI_CHECK_ARGS=1
3209	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3210	fi
3211
3212	if [[ "$totalview" = true ]]
3213	then
3214	printf "\n *** totalview debugger will be used"
3215	tv_opt="-tv"
3216	else
3217	tv_opt=""
3218	fi
3219
3220	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3221	then
3222	if [[ "$ENVIRONMENT" = BATCH ]]
3223	then
3224	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3225	then
3226	printf "\n +++ debug is allowed in interactive mode only"
3227	locat=debug
3228	exit
3229	fi
3230	fi
3231	if [[ $localhost = decalpha ]]
3232	then
3233	dxladebug a.out
3234	elif [[ $localhost = ibmh ]]
3235	then
3236
3237	# SETUP THE IBM MPI ENVIRONMENT
3238	export MP_SHARED_MEMORY=yes
3239	export AIXTHREADS_SCOPE=S
3240	export OMP_NUM_THREADS=$threads_per_task
3241	export AUTHSTATE=files
3242	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3243
3244	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3245	export MP_ADAPTER_USE=shared
3246	export MP_CPU_USE=multiple
3247	export MP_TIMEOUT=1200
3248
3249	unset MP_TASK_AFFINITY
3250
3251	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3252	#(( ii = 1 ))
3253	#while (( ii <= $numprocs ))
3254	#do
3255	# echo $localhost_realname >> hostfile
3256	# (( ii = ii + 1 ))
3257	#done
3258	#export MP_HOSTFILE=hostfile
3259
3260	if [[ "$LOADLBATCH" = yes ]]
3261	then
3262	totalview poe a.out $ROPTS
3263	else
3264	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3265	export TVDSVRLAUNCHCMD=ssh
3266	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3267	fi
3268	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3269	then
3270	# CURRENTLY NO DEBUGGER ON LCSGI
3271	if [[ $run_coupled_model = true ]]
3272	then
3273	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3274	locat=debug
3275	exit
3276	else
3277	echo "no_coupling" > runfile_atmos
3278	fi
3279	(( ii = $numprocs / $threads_per_task ))
3280	export OMP_NUM_THREADS=$threads_per_task
3281	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3282	if [[ $threads_per_task != 1 ]]
3283	then
3284	printf "\n threads per task: $threads_per_task"
3285	fi
3286	printf "\n\n"
3287	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3288	then
3289	# export MPI_LAUNCH_TIMEOUT=360
3290	if [[ "$totalview" = true ]]
3291	then
3292	printf "\n running totalview debugger"
3293	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3294	else
3295	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3296	fi
3297	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3298	then
3299	# ulimit -s 300000 # A too large stack size causes problems
3300	# export MV2_NUM_PORTS=2
3301	# export MV2_CPU_MAPPING=0:1:2:3
3302	if [[ "$totalview" = true ]]
3303	then
3304	printf "\n running totalview debugger"
3305	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3306	else
3307	mpiexec ./a.out $ROPTS < runfile_atmos
3308	fi
3309	fi
3310	else
3311	printf "\n +++ no debug available on \"$localhost\" "
3312	printf "\n or not implemented in mrun so far"
3313	locat=debug
3314	exit
3315	fi
3316
3317	# end debug mode
3318	else
3319
3320	# normal execution
3321	if [[ -n $numprocs ]]
3322	then
3323	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3324	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3325	then
3326	# SETUP THE IBM MPI ENVIRONMENT
3327	if [[ $host != ibmh && $host != ibmkisti ]]
3328	then
3329	export MP_SHARED_MEMORY=yes
3330	export AIXTHREAD_SCOPE=S
3331	export OMP_NUM_THREADS=$threads_per_task
3332	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3333	export AUTHSTATE=files
3334	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3335	# export MP_PRINTENV=yes
3336
3337	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3338	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3339	export MP_WAIT_MODE=poll
3340	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3341	fi
3342
3343	if [[ $host = ibmkisti ]]
3344	then
3345	export LANG=en_US
3346	export MP_SHARED_MEMORY=yes
3347	if [[ $threads_per_task = 1 ]]
3348	then
3349	export MP_SINGLE_THREAD=yes
3350	export MEMORY_AFFINITY=MCM
3351	else
3352	export OMP_NUM_THREADS=$threads_per_task
3353	fi
3354	fi
3355
3356	if [[ "$LOADLBATCH" = yes ]]
3357	then
3358	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3359	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3360	then
3361	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3362	else
3363	if [[ $run_coupled_model = false ]]
3364	then
3365	if [[ "$ocean_file_appendix" = true ]]
3366	then
3367	echo "precursor_ocean" > runfile_atmos
3368	else
3369	echo "precursor_atmos" > runfile_atmos
3370	fi
3371	else
3372	(( iia = $numprocs_atmos / $threads_per_task ))
3373	(( iio = $numprocs_ocean / $threads_per_task ))
3374	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3375	printf "\n using $coupled_mode coupling"
3376	printf "\n\n"
3377	echo "coupled_run $iia $iio" > runfile_atmos
3378	fi
3379	poe ./a.out $ROPTS < runfile_atmos
3380	fi
3381	else
3382	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3383	then
3384	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3385	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3386	then
3387	if [[ -f $hostfile ]]
3388	then
3389	cp $hostfile hostfile
3390	else
3391	(( ii = 1 ))
3392	while (( ii <= $numprocs ))
3393	do
3394	echo $localhost_realname >> hostfile
3395	(( ii = ii + 1 ))
3396	done
3397	fi
3398	export MP_HOSTFILE=hostfile
3399	if [[ $run_coupled_model = false ]]
3400	then
3401	if [[ "$ocean_file_appendix" = true ]]
3402	then
3403	echo "precursor_ocean" > runfile_atmos
3404	else
3405	echo "precursor_atmos" > runfile_atmos
3406	fi
3407	else
3408	(( iia = $numprocs_atmos / $threads_per_task ))
3409	(( iio = $numprocs_ocean / $threads_per_task ))
3410	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3411	printf "\n using $coupled_mode coupling"
3412	printf "\n\n"
3413	echo "coupled_run $iia $iio" > runfile_atmos
3414	fi
3415	if [[ $localhost = ibmy ]]
3416	then
3417	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3418	else
3419	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3420	fi
3421
3422	else
3423	if [[ "$host_file" = "" ]]
3424	then
3425	printf "\n +++ no hostfile given in configuration file"
3426	locat=config_file
3427	exit
3428	else
3429	eval host_file=$host_file
3430	fi
3431	export MP_HOSTFILE=$host_file
3432	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3433	fi
3434	fi
3435	elif [[ $host = nech \|\| $host = necriam ]]
3436	then
3437	(( ii = nodes ))
3438	if [[ $ii = 1 ]]
3439	then
3440	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3441	export MPIPROGINF=YES
3442	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3443	echo "*** execution on single node with mpirun"
3444	mpirun -np $numprocs ./a.out $ROPTS
3445	else
3446	(( i = 0 ))
3447	while (( i < ii ))
3448	do
3449	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3450	(( i = i + 1 ))
3451	done
3452
3453	echo "#!/bin/sh" > mpi_exec_shell
3454	echo " " >> mpi_exec_shell
3455	echo "set -u" >> mpi_exec_shell
3456	echo "F_ERRCNT=0" >> mpi_exec_shell
3457	echo "MPIPROGINV=YES" >> mpi_exec_shell
3458	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3459	echo "cpurest=$cpurest" >> mpi_exec_shell
3460	echo "fname=$fname" >> mpi_exec_shell
3461	echo "localhost=$localhost" >> mpi_exec_shell
3462	echo "return_addres=$return_addres" >> mpi_exec_shell
3463	echo "return_username=$return_username" >> mpi_exec_shell
3464	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3465	echo "write_binary=$write_binary" >> mpi_exec_shell
3466	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3467	echo " " >> mpi_exec_shell
3468	echo "export F_ERRCNT" >> mpi_exec_shell
3469	echo "export MPIPROGINV" >> mpi_exec_shell
3470	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3471	echo "export cpurest" >> mpi_exec_shell
3472	echo "export fname" >> mpi_exec_shell
3473	echo "export localhost" >> mpi_exec_shell
3474	echo "export return_addres" >> mpi_exec_shell
3475	echo "export return_username" >> mpi_exec_shell
3476	echo "export tasks_per_node" >> mpi_exec_shell
3477	echo "export write_binary" >> mpi_exec_shell
3478	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3479	echo " " >> mpi_exec_shell
3480	echo "exec ./a.out" >> mpi_exec_shell
3481
3482	chmod u+x mpi_exec_shell
3483	export MPIPROGINF=YES
3484	mpirun -f multinode_config &
3485	wait
3486
3487	fi
3488	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3489	then
3490
3491	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3492	# DOES NOT EXIST
3493	if [[ $host != lcsgih && $host != lcsgib ]]
3494	then
3495	if [[ -f $hostfile ]]
3496	then
3497	cp $hostfile hostfile
3498	(( ii = $numprocs / $threads_per_task ))
3499	else
3500	(( ii = 1 ))
3501	while (( ii <= $numprocs / $threads_per_task ))
3502	do
3503	echo $localhost_realname >> hostfile
3504	(( ii = ii + 1 ))
3505	done
3506	fi
3507	eval zeile=\"`head -n $ii hostfile`\"
3508	printf "\n *** running on: $zeile"
3509	fi
3510
3511	(( ii = $numprocs / $threads_per_task ))
3512	export OMP_NUM_THREADS=$threads_per_task
3513	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3514	if [[ $threads_per_task != 1 ]]
3515	then
3516	# increase stack size to unlimited, because large runs
3517	# may abort otherwise
3518	ulimit -Ss unlimited
3519	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3520	fi
3521	if [[ $run_coupled_model = false ]]
3522	then
3523	if [[ "$ocean_file_appendix" = true ]]
3524	then
3525	echo "precursor_ocean" > runfile_atmos
3526	else
3527	echo "precursor_atmos" > runfile_atmos
3528	fi
3529	printf "\n\n"
3530	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3531	then
3532	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3533	then
3534	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3535	# export MPI_DSM_DISTRIBUTE=1
3536	# MPI_DSM_CPULIST: pin MPI processes to cores
3537	if [[ $use_openmp = false ]]
3538	then
3539	if [[ "$sgi_feature" = ice2 ]]
3540	then
3541	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3542	else
3543	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3544	fi
3545	else
3546	unset MPI_DSM_CPULIST
3547	fi
3548	# MPI_IB_RAILS: use both IB rails on ICE2
3549	export MPI_BUFS_PER_HOST=512
3550	export MPI_IB_RAILS=2
3551	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3552	export MPI_CONNECTIONS_THRESHOLD=8192
3553	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3554	export MPI_TYPE_DEPTH=20
3555	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3556	export MPI_GROUP_MAX=64
3557	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3558	if [[ $use_openmp = true ]]
3559	then
3560	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3561	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3562	else
3563	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3564	fi
3565
3566	# next is test for openmp usage
3567	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3568	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3569	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3570	then
3571	export MV2_NUM_PORTS=2
3572	# The default setting of MV2_CPU_MAPPING gives best results
3573	# export MV2_ENABLE_AFFINITY=1
3574	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3575	# if [[ "$sgi_feature" = ice2 ]]
3576	# then
3577	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3578	# else
3579	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3580	# fi
3581	if [[ $use_openmp = true ]]
3582	then
3583	unset MV2_CPU_MAPPING
3584	export MV2_ENABLE_AFFINITY=0
3585	fi
3586	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3587	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3588	if [[ $use_openmp = true ]]
3589	then
3590	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3591	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3592	else
3593	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3594	fi
3595	elif [[ "$mpilib" = impi ]]
3596	then
3597	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3598	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3599	fi
3600	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3601	then
3602	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3603	elif [[ $host = lcflow ]]
3604	then
3605	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3606	elif [[ $host = lcsb ]]
3607	then
3608	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3609	elif [[ $host = lckiaps ]]
3610	then
3611	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3612	else
3613	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3614	fi
3615	else
3616
3617	# currently there is no full MPI-2 support on ICE and XT4
3618	(( iia = $numprocs_atmos / $threads_per_task ))
3619	(( iio = $numprocs_ocean / $threads_per_task ))
3620	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3621	printf "\n using $coupled_mode coupling"
3622	printf "\n\n"
3623
3624	if [[ $coupled_mode = "mpi2" ]]
3625	then
3626	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3627	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3628	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3629	then
3630
3631	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3632	then
3633	# export MPI_LAUNCH_TIMEOUT=360
3634	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3635	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3636	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3637	then
3638	# ulimit -s 300000 # A too large stack size causes problems
3639	# export MV2_NUM_PORTS=2
3640	# export MV2_CPU_MAPPING=0:1:2:3
3641	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3642	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3643	fi
3644
3645	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3646	then
3647
3648	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3649	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3650
3651	else
3652	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3653	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3654	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3655	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3656	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3657	fi
3658	wait
3659
3660	else
3661
3662	echo "coupled_run $iia $iio" > runfile_atmos
3663	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3664	then
3665
3666	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3667	then
3668	# export MPI_LAUNCH_TIMEOUT=360
3669	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3670	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3671	then
3672	# ulimit -s 300000 # A too large stack size causes problems
3673	# export MV2_NUM_PORTS=2
3674	# export MV2_CPU_MAPPING=0:1:2:3
3675	mpiexec ./a.out $ROPTS < runfile_atmos
3676	fi
3677
3678	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3679	then
3680
3681	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3682
3683	elif [[ $host = lck \|\| $host = lckordi ]]
3684	then
3685	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3686	fi
3687	wait
3688	fi
3689
3690	fi
3691	elif [[ $host = decalpha ]]
3692	then
3693	dmpirun -np $numprocs a.out $ROPTS
3694	elif [[ $host = lckyoto ]]
3695	then
3696	set -xv
3697	export P4_RSHCOMMAND=plesh
3698	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3699	if [[ "$ENVIRONMENT" = BATCH ]]
3700	then
3701	if [[ "$cond2" = fujitsu ]]
3702	then
3703	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3704	elif [[ "cond2" = pgi ]]
3705	then
3706	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3707	else
3708	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3709	fi
3710	else
3711	if [[ "$cond2" = "" ]]
3712	then
3713	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3714	else
3715	mpirun -np $numprocs ./a.out $ROPTS
3716	fi
3717	fi
3718	set +xv
3719	elif [[ $host = lctit ]]
3720	then
3721	export OMP_NUM_THREADS=$threads_per_task
3722	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3723	if [[ "$threads_per_task" != 1 ]]
3724	then
3725	export MV2_ENABLE_AFFINITY=0
3726	fi
3727	echo "----- PBS_NODEFILE content:"
3728	cat $PBS_NODEFILE
3729	echo "-----"
3730	(( ii = $numprocs / $threads_per_task ))
3731	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3732	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3733	else
3734	mpprun -n $numprocs a.out $ROPTS
3735	fi
3736	[[ $? != 0 ]] && execution_error=true
3737
3738
3739	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3740	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3741	then
3742	apprentice
3743	fi
3744	else
3745	a.out $ROPTS
3746	fi
3747	fi
3748	if [[ $? != 0 \|\| $execution_error = true ]]
3749	then
3750
3751	# ABBRUCH BEI LAUFZEITFEHLER
3752	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3753	printf "\n +++ runtime error occured"
3754	locat=execution
3755	exit
3756	else
3757	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3758	printf "\n$striche\n *** execution finished \n"
3759
3760	# Stop the dvr streaming server and process the dvr output in order
3761	# to create dvrs- and html-files containing all streams
3762	if [[ "$dvrserver_id" != "" ]]
3763	then
3764	kill $dvrserver_id
3765	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3766
3767	# If there is a directory, data have been output by the
3768	# streaming server. Otherwise, user has chosen dvrp_output=local
3769	if [[ -d DATA_DVR ]]
3770	then
3771
3772	# Add the current dvr configuration file to the dvr output
3773	# directory
3774	cp .dvrserver.config DATA_DVR
3775
3776	# Process the dvr output (option -s for also generating
3777	# sequence mode data)
3778	process_dvr_output -d DATA_DVR -f $fname -s
3779
3780	else
3781
3782	# Process the local output
3783	process_dvr_output -l -d DATA_DVR -f $fname
3784
3785	fi
3786
3787	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3788	then
3789
3790	# Process dvr output generated in local mode (dvrp_output=local)
3791	process_dvr_output -l -d DATA_DVR -f $fname
3792
3793	fi
3794	fi
3795
3796
3797
3798	# Call of combine_plot_fields in order to merge single files written
3799	# by each PE into one file.
3800	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3801	then
3802	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3803	printf "\n 2d- and/or 3d-data may be incomplete!"
3804	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3805	elif [[ "$combine_plot_fields" == true ]]
3806	then
3807	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3808	combine_plot_fields${block}.x
3809	else
3810	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3811	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3812	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3813	fi
3814
3815
3816
3817	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3818	(( i = 0 ))
3819	while (( i < ioc ))
3820	do
3821	(( i = i + 1 ))
3822	if (( i == 1 ))
3823	then
3824	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3825	fi
3826	printf "\n >>> ${out_command[$i]}"
3827	eval ${out_command[$i]}
3828	if (( i == ioc ))
3829	then
3830	printf "\n$striche\n"
3831	fi
3832	done
3833
3834
3835	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3836	if [[ $do_trace = true ]]
3837	then
3838	printf "\n\n"
3839	ls -al
3840	fi
3841
3842
3843
3844	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3845	(( i = 0 ))
3846	while (( i < iout ))
3847	do
3848	(( i = i + 1 ))
3849	if (( i == 1 ))
3850	then
3851	printf "\n\n *** saving OUTPUT-files:\n$striche"
3852	fi
3853
3854	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3855	files_for_pes=false; filetyp=file
3856	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3857	then
3858	files_for_pes=true; filetyp=directory
3859	actionout[$i]=""
3860	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3861	then
3862	actionout[$i]=""
3863	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3864	then
3865	files_for_pes=true; filetyp=directory
3866	actionout[$i]="ar"
3867	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3868	then
3869	actionout[$i]="ar"
3870	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3871	then
3872	files_for_pes=true; filetyp=directory
3873	actionout[$i]="fl"
3874	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3875	then
3876	actionout[$i]="fl"
3877	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3878	then
3879	files_for_pes=true; filetyp=directory
3880	actionout[$i]="tr"
3881	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3882	then
3883	actionout[$i]="tr"
3884	fi
3885
3886	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3887	then
3888	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3889	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3890	then
3891	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3892	else
3893
3894
3895	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3896	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3897	# REMOTE-RECHNUNGEN
3898	if [[ "${actionout[$i]}" = tr ]]
3899	then
3900	if [[ $localhost != $fromhost ]]
3901	then
3902	if [[ $files_for_pes = false ]]
3903	then
3904	cps=""
3905	cst=""
3906	else
3907	cps=-c
3908	cst="/"
3909	fi
3910	if [[ $localhost = nech ]]
3911	then
3912
3913	# TRANSFER IN EIGENSTAENDIGEM JOB
3914	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3915	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3916	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3917	if [[ $files_for_pes = false ]]
3918	then
3919	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3920	else
3921	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3922	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3923	fi
3924
3925	echo "set -x" > transfer_${localout[$i]}
3926	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3927
3928	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3929	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3930	printf "\n or higher cycle\n"
3931	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3932
3933	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3934
3935	if [[ $localhost = nech ]]
3936	then
3937	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3938	else
3939	if [[ "$LOGNAME" = b323013 ]]
3940	then
3941	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3942	else
3943	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3944	fi
3945	fi
3946
3947	else
3948
3949	# TRANSFER INNERHALB DIESES JOBS
3950	transfer_failed=false
3951	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3952	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3953	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3954	[[ $? != 0 ]] && transfer_failed=true
3955
3956	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3957	# LOKALER MASCHINE ANLEGEN
3958	if [[ $transfer_failed = true ]]
3959	then
3960	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3961	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3962
3963	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3964	# ANLEGEN.
3965	eval local_catalog=${pathout[$i]}
3966	if [[ ! -d $local_catalog ]]
3967	then
3968	printf " *** local directory does not exist. Trying to create:\n"
3969	printf " $local_catalog \n"
3970	mkdir -p $local_catalog
3971	fi
3972	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3973	transfer_problems=true
3974	fi
3975	fi
3976	else
3977
3978	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3979	actionout[$i]=""
3980	fi
3981	fi
3982
3983
3984	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3985	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3986	# REMOTE-RECHNUNGEN
3987	if [[ "${actionout[$i]}" = tra ]]
3988	then
3989	if [[ $localhost != $fromhost ]]
3990	then
3991	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3992	then
3993
3994	# TRANSFER IN EIGENSTAENDIGEM JOB
3995	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3996	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3997	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3998	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3999
4000	echo "set -x" > transfer_${localout[$i]}
4001	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4002
4003	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4004	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4005	printf "\n or higher cycle\n"
4006	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4007
4008	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4009
4010	if [[ $localhost = nech ]]
4011	then
4012	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4013	else
4014	if [[ $LOGNAME = b323013 ]]
4015	then
4016	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4017	else
4018	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4019	fi
4020	fi
4021
4022	else
4023
4024	# TRANSFER INNERHALB DIESES JOBS
4025	transfer_failed=false
4026	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4027	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4028	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4029	[[ $? != 0 ]] && transfer_failed=true
4030
4031	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4032	# LOKALER MASCHINE ANLEGEN
4033	if [[ $transfer_failed = true ]]
4034	then
4035	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4036	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4037
4038	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4039	# ANLEGEN
4040	eval local_catalog=${pathout[$i]}
4041	if [[ ! -d $local_catalog ]]
4042	then
4043	printf " *** local directory does not exist. Trying to create:\n"
4044	printf " $local_catalog \n"
4045	mkdir -p $local_catalog
4046	fi
4047
4048	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4049	transfer_problems=true
4050	fi
4051	fi
4052	else
4053
4054	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4055	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4056	actionout[$i]=a
4057	fi
4058	fi
4059
4060
4061	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4062	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4063	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4064	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4065	if [[ "${actionout[$i]}" = fl ]]
4066	then
4067	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4068	chmod g+rx $tmp_data_catalog
4069	if [[ $files_for_pes = false ]]
4070	then
4071	printf "\n >>> OUTPUT: ${localout[$i]} to"
4072	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4073	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4074	else
4075	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4076	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4077	mkdir $tmp_data_catalog/${frelout[$i]}
4078	cd ${localout[$i]}
4079	for file in $(ls *)
4080	do
4081	ln -f $file $tmp_data_catalog/${frelout[$i]}
4082	done
4083	cd $TEMPDIR
4084	fi
4085
4086
4087	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4088	if [[ $store_on_archive_system = true ]]
4089	then
4090
4091	if [[ $archive_system = asterix ]]
4092	then
4093	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4094	if [[ $files_for_pes = false ]]
4095	then
4096	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4097	else
4098	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4099	fi
4100	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4101	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4102	echo "then" >> archive_${frelout[$i]}
4103	echo " do_stageout=false" >> archive_${frelout[$i]}
4104	echo "else" >> archive_${frelout[$i]}
4105	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4106	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4107	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4108	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4109	if [[ $files_for_pes = false ]]
4110	then
4111	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4112	else
4113	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4114	fi
4115	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4116	echo "fi" >> archive_${frelout[$i]}
4117	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4118	elif [[ $archive_system = DMF ]]
4119	then
4120	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4121	if [[ $files_for_pes = false ]]
4122	then
4123	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4124	locat=DMF
4125	exit
4126	else
4127	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4128	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4129	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4130	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4131	fi
4132	elif [[ $archive_system = tivoli ]]
4133	then
4134	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4135	if [[ $files_for_pes = false ]]
4136	then
4137	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4138	echo "set -x" >> archive_${frelout[$i]}
4139	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4140	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4141	else
4142
4143	echo "set -x" >> archive_${frelout[$i]}
4144	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4145	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4146	cd $tmp_data_catalog
4147	all_files=`ls -1 ${frelout[$i]}/*`
4148	cd - > /dev/null
4149	(( inode = 0 ))
4150	(( tp1 = tasks_per_node + 1 ))
4151	while (( inode < nodes ))
4152	do
4153	# echo "*** all_files = \"$all_files\" "
4154	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4155	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4156	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4157	# echo "*** files = \"$files\" "
4158	# echo "*** all_files = \"$all_files\" "
4159	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4160	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4161	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4162	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4163	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4164	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4165	(( inode = inode + 1 ))
4166	done
4167	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4168	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4169	fi
4170	elif [[ $archive_system = ut ]]
4171	then
4172	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4173	if [[ $files_for_pes = false ]]
4174	then
4175	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4176	echo "set -x" >> archive_${frelout[$i]}
4177	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4178	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4179	else
4180
4181	echo "set -x" >> archive_${frelout[$i]}
4182	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4183	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4184	cd $tmp_data_catalog
4185	all_files=`ls -1 ${frelout[$i]}/*`
4186	cd - > /dev/null
4187	(( inode = 0 ))
4188	(( tp1 = tasks_per_node + 1 ))
4189	while (( inode < nodes ))
4190	do
4191	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4192	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4193	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4194	(( inode = inode + 1 ))
4195	done
4196	fi
4197	elif [[ $archive_system = none ]]
4198	then
4199	printf " +++ archiving on $localhost not available!\n"
4200	fi
4201
4202	if [[ $archive_system != none ]]
4203	then
4204	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4205	then
4206	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4207	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4208	elif [[ $localhost = nech ]]
4209	then
4210	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4211	fi
4212	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4213	fi
4214	else
4215	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4216	fi
4217
4218
4219	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4220	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4221	if [[ $files_for_pes = false ]]
4222	then
4223	cat /dev/null > ${pathout[$i]}
4224	else
4225	mkdir -p ${pathout[$i]}
4226	fi
4227
4228	fi
4229
4230
4231	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4232	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4233	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4234	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4235	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4236	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4237	if [[ "${actionout[$i]}" = ar ]]
4238	then
4239	if [[ $files_for_pes = false ]]
4240	then
4241	printf "\n >>> OUTPUT: ${localout[$i]} to"
4242	printf "\n ${pathout[$i]}"
4243	printf "\n File will be copied to archive-system ($archive_system) !\n"
4244	else
4245	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4246	printf "\n ${pathout[$i]}"
4247	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4248	fi
4249	mv ${localout[$i]} ${frelout[$i]}
4250
4251	file_saved=false
4252
4253	if [[ $archive_system = asterix ]]
4254	then
4255	do_stageout=true
4256	(( stageout_anz = 0 ))
4257	while [[ $do_stageout = true ]]
4258	do
4259	if [[ $files_for_pes = false ]]
4260	then
4261	stageout ${frelout[$i]} > STAGE_OUTPUT
4262	else
4263	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4264	fi
4265	cat STAGE_OUTPUT
4266	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4267	then
4268	file_saved=true
4269	do_stageout=false
4270	else
4271	if [[ $files_for_pes = false ]]
4272	then
4273	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4274	else
4275	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4276	fi
4277	(( stageout_anz = stageout_anz + 1 ))
4278	if (( stageout_anz == 10 ))
4279	then
4280	printf "\n +++ stoped after 10 unsuccessful tries!"
4281	archive_save=false
4282	do_stageout=false
4283	else
4284	printf "\n *** new try to store on archive after 15 min:"
4285	sleep 900
4286	fi
4287	fi
4288	done
4289	elif [[ $archive_system = DMF ]]
4290	then
4291	if [[ $files_for_pes = false ]]
4292	then
4293	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4294	locat=DMF
4295	exit
4296	else
4297	rm -rf $ARCHIVE/${frelout[$i]}
4298	cp -r ${frelout[$i]} $ARCHIVE
4299	fi
4300	file_saved=true
4301	elif [[ $archive_system = tivoli ]]
4302	then
4303	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4304	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4305	# GELEGT WERDEN
4306	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4307	chmod g+rx $tmp_data_catalog
4308	if [[ $files_for_pes = false ]]
4309	then
4310	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4311	else
4312	mkdir $tmp_data_catalog/${frelout[$i]}
4313	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4314	fi
4315
4316	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4317	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4318	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4319	if [[ $files_for_pes = false ]]
4320	then
4321	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4322	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4323	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4324	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4325	else
4326	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4327	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4328	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4329	fi
4330
4331	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4332	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4333	file_saved=true
4334
4335	elif [[ $archive_system = ut ]]
4336	then
4337	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4338	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4339	# GELEGT WERDEN
4340	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4341	chmod g+rx $tmp_data_catalog
4342	if [[ $files_for_pes = false ]]
4343	then
4344	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4345	else
4346	mkdir $tmp_data_catalog/${frelout[$i]}
4347	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4348	fi
4349
4350	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4351	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4352	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4353	if [[ $files_for_pes = false ]]
4354	then
4355	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4356	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4357	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4358	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4359	else
4360	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4361	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4362	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4363	fi
4364
4365	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4366	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4367	file_saved=true
4368
4369	else
4370	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4371	archive_save=false
4372	fi
4373	if [[ $file_saved = true ]]
4374	then
4375	if [[ $files_for_pes = false ]]
4376	then
4377	cat /dev/null > ${pathout[$i]}
4378	else
4379	mkdir -p ${pathout[$i]}
4380	fi
4381	fi
4382	fi
4383
4384	# APPEND AUF LOKALER MASCHINE
4385	if [[ "${actionout[$i]}" = "a" ]]
4386	then
4387	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4388	then
4389	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4390	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4391	else
4392	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4393	cat ${localout[$i]} >> ${pathout[$i]}
4394	fi
4395	fi
4396
4397	# KOPIEREN AUF LOKALER MASCHINE
4398	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4399	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4400	then
4401
4402	# KOPIEREN AUF EINPROZESSORMASCHINE
4403	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4404	then
4405	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4406	if [[ $link_local_output = true ]]
4407	then
4408	printf " using ln -f\n"
4409	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4410	fi
4411	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4412	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4413	then
4414	if [[ $link_local_output = true ]]
4415	then
4416	printf " ln failed, using cp...\n"
4417	fi
4418	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4419	fi
4420	else
4421	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4422	if [[ $link_local_output = true ]]
4423	then
4424	printf " using ln -f\n"
4425	ln -f ${localout[$i]} ${pathout[$i]}
4426	fi
4427	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4428	if [[ ! -f "${pathout[$i]}" ]]
4429	then
4430	if [[ $link_local_output = true ]]
4431	then
4432	printf " ln failed, using cp...\n"
4433	fi
4434	cp ${localout[$i]} ${pathout[$i]}
4435	fi
4436	fi
4437
4438	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4439	then
4440
4441	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4442	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4443	# WIRD DANN KOPIERT
4444	# PER MOVE UMBENANNT WERDEN
4445	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4446	if [[ $link_local_output = true ]]
4447	then
4448	printf " using ln -f\n"
4449	mkdir ${pathout[$i]}
4450	cd ${localout[$i]}
4451	for file in $(ls *)
4452	do
4453	ln -f $file ${pathout[$i]}
4454	done
4455	cd $TEMPDIR
4456	fi
4457	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4458	if [[ ! -f "${pathout[$i]}/_0000" ]]
4459	then
4460	if [[ $link_local_output = true ]]
4461	then
4462	printf " ln failed for .../_0000, using cp...\n"
4463	fi
4464	cp -r ${localout[$i]} ${pathout[$i]}
4465	fi
4466
4467	fi
4468	fi
4469	done
4470	if (( i != 0 ))
4471	then
4472	if [[ $transfer_problems = true ]]
4473	then
4474	printf "\n$striche\n *** OUTPUT-files saved"
4475	printf "\n +++ WARNING: some data transfers failed! \n"
4476	else
4477	printf "\n$striche\n *** all OUTPUT-files saved \n"
4478	fi
4479	fi
4480
4481
4482	# EVENTUELL FOLGEJOB STARTEN
4483	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4484	if [[ -f CONTINUE_RUN ]]
4485	then
4486
4487	if [[ $archive_save = true ]]
4488	then
4489
4490	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4491	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4492	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4493	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4494	# HANDEN
4495	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4496	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4497	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4498	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4499	then
4500	mc=`echo $mc \| sed 's/#/f/g'`
4501	fi
4502
4503
4504	# JOB STARTEN
4505	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4506	echo " $mc"
4507	printf "\n$striche\n"
4508	if [[ $localhost != $fromhost ]]
4509	then
4510
4511	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4512	then
4513	echo "*** ssh will be used to initiate restart-runs!"
4514	echo " return_addres=\"$return_addres\" "
4515	echo " return_username=\"$return_username\" "
4516	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4517	then
4518	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4519	else
4520	if [[ $localhost = ibmkisti ]]
4521	then
4522	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4523	else
4524	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4525	fi
4526	fi
4527	else
4528	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4529	locat=restart; exit
4530	fi
4531
4532	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4533	# DER AKTUELLE JOB ENDET
4534	if [[ $queue = special1q ]]
4535	then
4536	sleep 120
4537	else
4538	sleep 30
4539	fi
4540
4541	else
4542
4543	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4544	# RUFEN WERDEN, AUSSER AUF lcfimm
4545	cd $LOCAL_PWD
4546	if [[ $localhost = lcfimm ]]
4547	then
4548	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4549	else
4550	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4551	fi
4552	cd - > /dev/null
4553	fi
4554	printf "\n$striche\n *** restart-run initiated \n"
4555
4556
4557	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4558	# GEHOLT WORDEN SIND, LOESCHEN
4559	(( i = 0 ))
4560	while (( i < iin ))
4561	do
4562	(( i = i + 1 ))
4563	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4564	then
4565	rm -r $tmp_data_catalog/${frelin[$i]}
4566	fi
4567	done
4568
4569	else
4570
4571	printf "\n +++ no restart-run possible, since errors occured"
4572	printf "\n during the archive process"
4573	fi
4574
4575	fi
4576
4577
4578
4579	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4580	if [[ "$email_notification" != "none" ]]
4581	then
4582
4583	if [[ $localhost != $fromhost ]]
4584	then
4585	if [[ -f CONTINUE_RUN ]]
4586	then
4587	echo "PALM restart run necessary" > email_text
4588	echo "description header of actual run:" >> email_text
4589	cat CONTINUE_RUN >> email_text
4590	echo "mrun-command to restart:" >> email_text
4591	echo "$mc" >> email_text
4592	else
4593	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4594	fi
4595	mail $email_notification < email_text
4596	printf "\n *** email notification sent to \"$email_notification\" "
4597	fi
4598	fi
4599
4600
4601
4602	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4603	cd $HOME
4604	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4605
4606	else
4607
4608
4609	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4610	# CHENDE AKTIONEN DURCHGEFUEHRT
4611
4612	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4613	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4614	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4615	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4616	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4617	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4618	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4619	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4620	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4621	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4622	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4623	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4624	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4625	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4626	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4627	if [[ $use_openmp = true ]]
4628	then
4629	mrun_com=${mrun_com}" -O $threads_per_task"
4630	fi
4631	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4632	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4633	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4634	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4635	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4636	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4637	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4638	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4639	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4640	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4641	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4642	if [[ $do_remote = true ]]
4643	then
4644	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4645	fi
4646
4647
4648	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4649	jobfile=jobfile.$RANDOM
4650
4651
4652	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4653	echo "mkdir $TEMPDIR" >> $jobfile
4654	echo "cd $TEMPDIR" >> $jobfile
4655
4656
4657	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4658	if [[ $do_trace = true ]]
4659	then
4660	echo "set -x" >> $jobfile
4661	else
4662	echo "set +vx" >> $jobfile
4663	fi
4664
4665
4666	# initialize the environment and load modules
4667	if [[ "$init_cmds" != "" ]]
4668	then
4669	echo "$init_cmds" >> $jobfile
4670	fi
4671	if [[ "$module_calls" != "" ]]
4672	then
4673	echo "$module_calls" >> $jobfile
4674	fi
4675
4676
4677	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4678	# DATEI FUER DEN JOB
4679	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4680	then
4681
4682	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4683	# KOPIEREN
4684	if [[ $restart_run != true ]]
4685	then
4686	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4687	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4688	fi
4689
4690	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4691	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4692	echo "set -x" >> $jobfile
4693	if [[ $host = $localhost ]]
4694	then
4695	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4696	else
4697	if [[ $host != ibmkisti ]]
4698	then
4699	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4700	else
4701	# on KISTI's IBM firewall is only opened on interactive node
4702	echo "localdir=\`pwd\`" >> $jobfile
4703	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4704	fi
4705	fi
4706	echo "export SOURCES_COMPLETE=true" >> $jobfile
4707
4708	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4709	# ARBEITSVERZEICHNIS VERSCHIEBEN
4710	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4711	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4712	echo "execute_mrun=true" >> $jobfile
4713	echo " " >> $jobfile
4714
4715	else
4716
4717	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4718	# SOWIE GEGEBENENFALLS DES MAKEFILES
4719	if [[ $do_compile = true ]]
4720	then
4721
4722	source_catalog=SOURCES_FOR_RUN_$fname
4723
4724	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4725	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4726	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4727	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4728	echo "export SOURCES_COMPLETE=true" >> $jobfile
4729	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4730
4731	for filename in $source_list
4732	do
4733	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4734	echo "cat > $filename << \"%END%\"" >> $jobfile
4735	cat $source_catalog/$filename >> $jobfile
4736	echo " " >> $jobfile
4737	echo "%END%" >> $jobfile
4738	echo " " >> $jobfile
4739	done
4740
4741	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4742	echo "cat > Makefile << \"%END%\"" >> $jobfile
4743	cat $source_catalog/Makefile >> $jobfile
4744	echo " " >> $jobfile
4745	echo "%END%" >> $jobfile
4746	echo " " >> $jobfile
4747
4748	echo "cd - > /dev/null" >> $jobfile
4749
4750	fi
4751
4752
4753	# ABSPEICHERN DER KONFIGURATIONSDATEI
4754	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4755	echo "cat > $config_file << \"%END%\"" >> $jobfile
4756	cat $config_file >> $jobfile
4757	echo "%END%" >> $jobfile
4758	echo " " >> $jobfile
4759
4760
4761	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4762	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4763	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4764	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4765	echo "%END%" >> $jobfile
4766	echo "chmod u+x $mrun_script_name" >> $jobfile
4767	echo "execute_mrun=true" >> $jobfile
4768	echo " " >> $jobfile
4769
4770	fi
4771
4772
4773	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4774	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4775	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4776	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4777	if [[ $do_remote = true ]]
4778	then
4779	(( i = 0 ))
4780	while (( i < iin ))
4781	do
4782	(( i = i + 1 ))
4783	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4784	if [[ "${transin[$i]}" = job ]]
4785	then
4786	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4787	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4788	echo " " >> $jobfile
4789	echo "%END%" >> $jobfile
4790	else
4791	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4792	fi
4793
4794	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4795	echo "if [[ \$? = 1 ]]" >> $jobfile
4796	echo "then" >> $jobfile
4797	echo " echo \" \" " >> $jobfile
4798	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4799	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4800	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4801	echo " execute_mrun=false" >> $jobfile
4802	echo "fi" >> $jobfile
4803	done
4804	fi
4805
4806	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4807	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4808	echo "LOCAL_PWD=$working_directory" >> $jobfile
4809	echo "export LOCAL_PWD" >> $jobfile
4810
4811	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4812	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4813	echo "export LOCAL_MRUN_PATH" >> $jobfile
4814
4815	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4816	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4817	then
4818	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4819	fi
4820
4821	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4822	echo "set -x" >> $jobfile
4823	echo "queue=$queue" >> $jobfile
4824	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4825
4826	echo 'ls -al; echo `pwd`' >> $jobfile
4827	echo "cd \$HOME" >> $jobfile
4828	echo "rm -rf $TEMPDIR" >> $jobfile
4829
4830
4831
4832
4833	# JOB PER SUBJOB STARTEN
4834	if [[ $silent = false ]]
4835	then
4836	printf "\n "
4837	else
4838	printf "\n\n"
4839	fi
4840
4841	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4842	rm -rf $jobfile
4843
4844
4845	fi # ENDE REMOTE-TEIL
4846
4847
4848
4849	# ENDE DER PROZEDUR

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