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source: palm/trunk/SCRIPTS/mrun @ 1046

Last change on this file since 1046 was 1046, checked in by maronga, 11 years ago
put scripts and utilities under GPL
Property svn:keywords set to `Id Rev`
File size: 191.6 KB

Line
1	#!/bin/ksh
2
3	#--------------------------------------------------------------------------------#
4	# This file is part of PALM.
5	#
6	# PALM is free software: you can redistribute it and/or modify it under the terms
7	# of the GNU General Public License as published by the Free Software Foundation,
8	# either version 3 of the License, or (at your option) any later version.
9	#
10	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	#
14	# You should have received a copy of the GNU General Public License along with
15	# PALM. If not, see <http://www.gnu.org/licenses/>.
16	#
17	# Copyright 1997-2012 Leibniz University Hannover
18	#--------------------------------------------------------------------------------#
19	#
20	# Current revisions:
21	# -----------------
22	# code put under GPL (PALM 3.9)
23	#
24	# Former revisions:
25	# -----------------
26	# mrun - script for running PALM jobs
27	# $Id: mrun 1046 2012-11-09 14:38:45Z maronga $
28
29	# Procedure for interactive/batch PALM runs (initial runs and automatic
30	# restart runs)
31
32	# Last changes:
33	# 03/03/94 - Siggi - Entwicklungsbeginn
34	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
35	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
36	# zelne Variable exportiert. Dies ist noetig, weil an-
37	# sonsten irgendein Speicher ueberlaeuft und von mrun
38	# aufgerufene Programme (z.B. stageout) mit Fehlern
39	# abbrechen (too many arguments)
40	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
41	# defaultmaessig im RRZN-Profile eingeschaltet
42	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
43	# wegfallen
44	# 25/04/00 - Siggi - Version 1.5
45	# remote_addres und remote_user in return_addres bzw.
46	# return_username umbenannt, return_username wird dem
47	# mrun-Aufruf im Job ueber Option -U mitgegeben.
48	# Neue Variable remote_username, die beim interaktiven
49	# mrun-Aufruf zwingend ueber die neue Option -u oder
50	# in der Konfigurationsdatei angegeben werden muss.
51	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
52	# Version 1.7
53	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
54	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
55	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
56	# zu bestimmen; Praeprozessoroptionen haben nun alle
57	# die Form -Dtext=text, weil auf IBM sonst text durch
58	# die leere Zeichenkette ersetzt wird
59	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
60	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
61	# (-D$OMP=OMP) in order to avoid problems with
62	# OMP_NUM_THREADS
63	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
64	# tar files, one for each node used
65	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
66	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
67	# 17/01/05 - Siggi - job for data transfer to local machine now within
68	# job class c1 (HLRN)
69	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
70	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
71	# base filename and cycle number
72	# 16/02/05 - Gerald - hababai validated
73	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
74	# 29/03/05 - Marcus - berni*-en0 validated
75	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
76	# 24/04/05 - Siggi - netcdf support on lcmuk
77	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
78	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
79	# number) can now be used within interactive runs
80	# 12/05/05 - Siggi - netcdf support on ibm
81	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
82	# 18/05/05 - Siggi - netcdf support on nec
83	# 24/05/05 - Siggi - netcdf support on ibms
84	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
85	# to 30 seconds
86	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
87	# PATH is temporarily set)
88	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
89	# caused warnings in the job protocol
90	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
91	# 25/10/05 - Siggi - error in listing files for getting the cycle number
92	# removed
93	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
94	# realized by file attribute trpe
95	# 28/10/05 - Siggi - if existing, the file extension is output in case
96	# of missing input file - no job abort in case of
97	# missing input files with file extensions
98	# (preliminary solution)
99	# 31/10/05 - Siggi - data transfer from nech now within seperate job
100	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
101	# 07/12/05 - Siggi - gallego and elephanta admitted
102	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
103	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
104	# 20/01/06 - Siggi - cpp directive for ibmy
105	# 09/02/06 - Siggi - ibmy admitted for batch mode
106	# 13/04/06 - Siggi - ostria admitted
107	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
108	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
109	# optimization of OpenMP runs (option stacksize is
110	# necessary for large gridpoint numbers because
111	# otherwise a segmentation fault occurs)
112	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
113	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
114	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
115	# 20/09/06 - Marcus - add DVRP library on nech
116	# 24/10/06 - Siggi - Environment variables for PALM steering are written
117	# on local NAMELIST file ENVPAR
118	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
119	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
120	# 06/02/07 - Siggi - add DVRP library on lcmuk
121	# 07/02/07 - Siggi - revision of source code handling, source code is
122	# now expected in directory given by source_path and
123	# not in the current working directory, source code
124	# files provided in add_source_path are allways
125	# compiled, source code to be compiled is allways
126	# sampled in SOURCES_FOR_RUN_$fname which is a
127	# subdirectory of the current working directory,
128	# -s TEST changed to -s WRITE_PERMIT or -s WP,
129	# adapted for RIAM (neck)
130	# bugfix for cycle number of output file (extout)
131	# all hpmuk-related code removed
132	# 14/02/07 - Siggi - dvrp support for neck added
133	# 28/02/07 - Siggi - empty lines in configuration file are accepted
134	# mrun_path replaced by PALM_BIN,
135	# all machines are calling interpret_config.x
136	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
137	# output
138	# 16/03/07 - Siggi - adjustments for lctit
139	# 29/03/07 - Siggi - global revision transfered to batch job by new
140	# option -G
141	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
142	# + netcdf/dvrp-options are read from configuration
143	# file, host identifier (local_host) is read from
144	# config file, code related to ftp filetransfer
145	# removed (incl. option -f)
146	# 19/06/07 - Siggi - time limit for cdata jobs increased
147	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
148	# if new option -Y (coupling) is given,
149	# output of executables to aout_output removed,
150	# messages are immediately written to stdout instead
151	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
152	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
153	# variables out to the nodes in coupled mode -disabled-
154	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
155	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
156	# environment variables out to the nodes in coupled mode
157	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
158	# suggestions
159	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
160	# argument -g group_number, admit all sla* node_usage
161	# queues
162	# 30/10/07 - Marcus - further adjustments for queues on lctit
163	# 14/02/08 - Bjoern - link of restart files with long file name possible
164	# 28/02/08 - Marcus - If environment variable link_local_output is set to
165	# true, mrun tries "ln -f" on local output and resorts
166	# to "cp" or "cp -r" on error
167	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
168	# which allows the user to choose his own job catalog
169	# by setting job_catalog in the configuration file
170	# (default is ~/job_queue),
171	# workaround for mpiexec with -env option,
172	# adjustments for lcxt4 (Bergen Center for Computational
173	# Science)
174	# 22/05/08 - Marcus - If environment variable link_local_input is set to
175	# true, mrun tries "ln -f" on local input and resorts
176	# to "cp" or "cp -r" on error
177	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
178	# 14/07/08 - Siggi - adjustments for lcsgih
179	# 08/08/08 - Marcus - typo removed in lcxt4 branch
180	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
181	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
182	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
183	# argument
184	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
185	# file
186	# 11/11/08 - Siggi - rules for using user code files changed: user
187	# code splitted into one file per subroutine,
188	# user can provide his/her own makefile, only
189	# default source-code filenames are allowed
190	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
191	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
192	# with environment variable mpilib
193	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
194	# using environment variable totalview
195	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
196	# interactive runs
197	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
198	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
199	# dvr streaming server is automatically started using
200	# new variable dvr_server and a configuration file
201	# .dvrserver.config,
202	# processing of dvr output files using new script
203	# process_dvr_output implemented, in order to make
204	# dvr application more user friendly
205	# 20/03/09 - Marcus - update of n1ge command for lctit
206	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
207	# to be followed by a coupled atmosphere-ocean run
208	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
209	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
210	# 08/07/09 - Siggi - default value for email_notification is none,
211	# option -e added to subjob
212	# 19/08/09 - Marcus - MPI debug option
213	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
214	# 25/08/09 - BjornM - adpated for lck
215	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
216	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
217	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
218	# switches on archiving, archiving on SGI-ICE enabled
219	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
220	# adjustment for special1q
221	# 18/12/09 - Carolin- modification of archiving (permq)
222	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
223	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
224	# implemented
225	# 08/02/10 - Siggi - loading of modules now controlled via configuration
226	# file (modules)
227	# 02/03/10 - Siggi - for each block in the configuration file, separate
228	# utility programs are used, combine_plot_fields is
229	# directly called and must not be given by an output
230	# command in the configuration file any more
231	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
232	# lcsgih/lcsgib is done using the names
233	# hicegate0/bicegate0 instead of the IP addresses
234	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
235	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
236	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
237	# has now argument threads_per_task
238	# adjustments for Kyushu Univ. (lcrte, ibmku)
239	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
240	# institute of technology (lctit)
241	# 23/12/10 - Micha - different number of processors in ocean and
242	# atmosphere is now allowed
243	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
244	# usage
245	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
246	# usage, totalview usage extended
247	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
248	# 03/04/11 - Micha - added lckordi
249	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
250	# 17/08/11 - Siggi - extensions for impi library
251	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
252	# (.nc)
253	# 18/08/11 - Marcus - support for Linux OS with German locale
254	# - properly report hosts on general Linux clusters
255	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
256	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
257	# IMUK
258	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
259	# io streams, option -T is obligatory from now on
260	# 25/01/12 - BjornM - a namelist file check prior to the model run has
261	# been implemented (check_namelist_files).
262	# New option -z can be used to skip the check
263	# 03/02/12 - BjornM - namelist file check temporary disabled
264	# until severel bugs are fixed
265	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
266	# restart runs. check is now possible with topography
267	# and the -v (silent) option is considered
268	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
269	# Farah queue for lcsgi to testq, since bigq is not
270	# available on ice1
271	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
272	# file, which is generated for the namelist file check
273	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
274	# 22/02/12 - Siggi - -s info updated
275	# 22/02/12 - Siggi - case "-s WP" removed
276	# 28/02/12 - BjornM - further adjustments for namelist file check
277	# 09/03/12 - Siggi - -T option not obligatory for lcflow
278	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
279	# 21/03/12 - Matthias - default compiler on ibmh changed
280	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
281	# bugfixes for the parameter file check, initial
282	# commands on ssh calls sourced out to .mrun.config
283	# 05/06/12 - Bjoern - bugfixes for the parameter file check on lcxe6.
284	# combine_plot_fields can be switched off by the
285	# new mrun option -Z
286	# 08/06/12 - Bjoern - max_pr_user enabled for the namelist file check,
287	# sleep commands are now disabled in silent mode (-v)
288	# 06/08/12 - Bjoern - update: system update at imuk now requires (new)
289	# initial shell commands on ssh calls (automatic
290	# restart runs were not possible)
291	# 22/08/12 - Bjoern - bugfix: missing export statement in the previous
292	# update of the ssh calls
293	# 06/09/12 - Bjoern - typo removed: "-D_parallel" -> "-D__parallel"
294	# 02/10/12 - Siggi - adjusted for lcsb (urban00)
295	# 31/10/12 - Siggi - -T option not obligatory for lcxt5m,
296	# tasks_per_node not checked for this machine
297	# 01/11/12 - Siggi - adjusted for lckiaps
298	# 07/11/12 - Bjoern - parameter file check adapted for batch jobs on
299	# local host
300
301
302
303	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
304
305	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
306	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
307	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
308
309	AddFilenames=""
310	additional_conditions=""
311	add_source_path=""
312	afname=""
313	archive_save=true
314	archive_system=none
315	check_namelist_files=true
316	combine_plot_fields=true
317	compiler_name=""
318	cond1=""
319	cond2=""
320	config_file=.mrun.config
321	coupled_dist=""
322	coupled_mode="mpi1"
323	cpp_opts=""
324	cpp_options=""
325	cpumax=0
326	cpurest=0
327	delete_temporary_catalog=true
328	do_batch=false
329	do_compile=true
330	do_remote=false
331	do_stagein=true
332	do_stageout=true
333	do_trace=false
334	email_notification="none"
335	exclude=""
336	executable=""
337	execution_error=false
338	fimm=false
339	fname=test
340	fromhost=""
341	global_revision=""
342	group_number=none
343	host=""
344	host_file=""
345	hp=""
346	ignore_archive_error=false
347	input_list=""
348	interpreted_config_file=""
349	job_catalog="~/job_queue"
350	job_on_file=""
351	keep_data_from_previous_run=false
352	link_local_input=false
353	link_local_output=false
354	localhost_realname=$(hostname)
355	local_compile=false
356	local_dvrserver_running=.FALSE.
357	locat=normal
358	mainprog=""
359	makefile=""
360	max_par_io_str=""
361	mc=$0
362	while [[ $(echo $mc \| grep -c "/") != 0 ]]
363	do
364	mc=`echo $mc \| cut -f2- -d"/"`
365	done
366	module_calls=""
367	mrun_script_name=$mc
368	netcdf_inc=""
369	netcdf_lib=""
370	netcdf_support=false
371	node_usage=default
372	numprocs=""
373	numprocs_atmos=0
374	numprocs_ocean=0
375	OOPT=""
376	openmp=false
377	output_list=""
378	package_list=""
379	punkte="..........................................................."
380	queue=none
381	read_from_config=""
382	restart_run=false
383	if [[ `hostname` = rte10 ]]
384	then
385	return_addres=133.5.185.60
386	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
387	elif [[ `hostname` = climate0 ]]
388	then
389	return_addres=165.132.26.68
390	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
391	elif [[ `hostname` = urban00 ]]
392	then
393	return_addres=147.46.30.151
394	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
395	else
396	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
397	fi
398	return_password=""
399	return_username=$LOGNAME
400	remotecall=false
401	remote_username=""
402	run_coupled_model=false
403	run_mode=""
404	scirocco=false
405	store_on_archive_system=false
406	striche=" ----------------------------------------------------------------------------"
407	silent=false
408	source_list=""
409	source_path=SOURCE
410	tasks_per_node=""
411	threads_per_task=1
412	tmpcreate=false
413	tmp_data_catalog=""
414	transfer_problems=false
415	usern=$LOGNAME
416	use_openmp=false
417	working_directory=`pwd`
418	TOPT=""
419	XOPT=""
420	zeit=$( date \| cut -c 12-19 )
421
422	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
423	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
424
425	typeset -R30 calltime
426	typeset -L20 spalte1
427	typeset -L40 spalte2
428	typeset -L60 spalte3
429	typeset -L35 string1=`date`
430	typeset -L12 string2=$usern
431	typeset -L12 string3=$localhost_realname
432	typeset -L12 string4
433	typeset -L12 string5
434	typeset -L30 version="MRUN 2.0 Rev$Rev: 1046 $"
435
436
437
438	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
439	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
440
441	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
442	# EXPORTIERT WERDEN
443	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
444	export group_number input_list memory numprocs output_list queue run_mode
445
446
447
448	# FEHLERBEHANDLUNG
449	# BEI EXIT:
450	trap 'rm -rf $working_directory/tmp_mrun
451	if [[ $locat != localhost ]]
452	then
453	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
454	# then
455	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
456	#MRUN-calls on $localhost
457	#
458	#date and time user localhost remotehost termination mrun-command
459	#--------------------------------------------------------------------------------------------------------------------
460	#%STATEND%
461	# chmod 666 ${mrun_path}/statistik/mrun_statistik
462	# fi
463	#
464	# # EINTRAG IN DIE STATISTIK-DATEI
465	# string4=$host
466	# string5=$locat
467	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
468	# then
469	# if [[ $do_batch = true ]]
470	# then
471	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
472	# else
473	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
474	# fi
475	# fi
476	echo " " > /dev/null
477	fi
478
479	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
480	then
481
482	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
483	(( i = 0 ))
484	while (( i < iec ))
485	do
486	(( i = i + 1 ))
487	printf "\n *** Execution of ERROR-command:\n"
488	printf " >>> ${err_command[$i]}\n"
489	eval ${err_command[$i]}
490	done
491	if [[ -n $interpreted_config_file ]] then
492	rm -rf $interpreted_config_file
493	fi
494	if [[ -n .mrun_environment ]] then
495	rm -rf .mrun_environment
496	fi
497	if [[ $tmpcreate = true ]]
498	then
499	printf "\n *** Contents of \"$TEMPDIR\":\n"
500	ls -al; cd
501	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
502	fi
503	if [[ "$dvrserver_id" != "" ]]
504	then
505	echo "+++ killing dvrserver_id=$dvrserver_id"
506	kill $dvrserver_id
507	fi
508	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
509	then
510	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
511	fi
512	printf "\n\n+++ MRUN killed \n\n"
513	elif [[ $locat != control_c ]]
514	then
515	printf "\n\n --> all actions finished\n\n"
516	printf " Bye, bye $usern !!\n\n"
517	fi' exit
518
519
520	# BEI TERMINAL-BREAK:
521	trap 'rm -rf $working_directory/tmp_mrun
522	rm -rf $working_directory/tmp_check_namelist_files
523	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
524	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
525	then
526	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
527	fi
528	if [[ "$dvrserver_id" != "" ]]
529	then
530	echo "+++ killing dvrserver_id=$dvrserver_id"
531	kill $dvrserver_id
532	fi
533	printf "\n+++ MRUN killed by \"^C\" \n\n"
534	locat=control_c
535	exit
536	' 2
537
538
539	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
540	# BEEN SET
541	if [[ "$PALM_BIN" = "" ]]
542	then
543	printf "\n +++ environment variable PALM_BIN has not been set"
544	printf "\n please set it to the directory where the PALM scripts are located"
545	locat=palm_bin; exit
546	fi
547	export PATH=$PALM_BIN:$PATH
548
549
550
551	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
552	# FUER FOLGEJOBS BENOETIGT WIRD
553	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
554	do
555	case $option in
556	(a) afname=$OPTARG;;
557	(A) store_on_archive_system=true; mc="$mc -A";;
558	(b) do_batch=true; mc="$mc -b";;
559	(B) delete_temporary_catalog=false; mc="$mc -B";;
560	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
561	(C) restart_run=true; mc="$mc -C";;
562	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
563	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
564	(F) job_on_file="-D"; mc="$mc -F";;
565	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
566	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
567	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
568	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
569	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
570	(I) ignore_archive_error=true; mc="$mc -I";;
571	(k) keep_data_from_previous_run=true; mc="$mc -k";;
572	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
573	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
574	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
575	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
576	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
577	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
578	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
579	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
580	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
581	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
582	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
583	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
584	(S) read_from_config=false; mc="$mc -S";;
585	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
586	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
587	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
588	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
589	(v) silent=true; mc="$mc -v";;
590	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
591	(x) do_trace=true;set -x; mc="$mc -x";;
592	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
593	(y) ocean_file_appendix=true; mc="$mc -y";;
594	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
595	(z) check_namelist_files=false; mc="$mc -z";;
596	(Z) combine_plot_fields=false; mc="$mc -Z";;
597	(\?) printf "\n +++ unknown option $OPTARG \n"
598	printf "\n --> type \"$0 ?\" for available options \n"
599	locat=parameter;exit;;
600	esac
601	done
602
603
604	# EVTL. POSITIONSPARAMETER EINLESEN
605	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
606	shift OPTIND-1
607
608
609	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
610	if [[ "$1" = "?" ]]
611	then
612	(printf "\n *** mrun can be called as follows:\n"
613	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
614	printf "\n Description of available options:\n"
615	printf "\n Option Description Default-Value"
616	printf "\n -a base name of input files equiv. -d"
617	printf "\n -A archiving when using file-attribute fl"
618	printf "\n -b batch-job on local machine ---"
619	printf "\n -B do not delete temporary directory at end ---"
620	printf "\n -c configuration file .mrun.config"
621	printf "\n -d base name of files attached to program test"
622	printf "\n -D preprocessor(cpp)-directives \"\" "
623	printf "\n -F create remote job file only ---"
624	printf "\n -h execution host $localhost_realname"
625	printf "\n -i INPUT control list \"\" "
626	printf "\n -I archiving errors of previous batch-jobs"
627	printf "\n will be ignored"
628	printf "\n -k keep data from previous run"
629	printf "\n -K additional conditions for controling"
630	printf "\n usage of conditional code and"
631	printf "\n env-variables in configuration file \"\" "
632	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
633	printf "\n -M Makefile name Makefile"
634	printf "\n -n node usage (shared/not_shared) depending on -h"
635	printf "\n -o OUTPUT control list \"\" "
636	printf "\n -O use OpenMP ---"
637	printf "\n -p software package list \"\" "
638	printf "\n -q queue \"$queue\" "
639	printf "\n -r run control list (combines -i -o) \"\" "
640	printf "\n -s filenames of routines to be compiled \"\" "
641	printf "\n must end with .f, .f90, .F, or .c !"
642	printf "\n use \"..\" for more than one file and wildcards"
643	printf "\n -s LM compiles all locally modified files"
644	printf "\n -S config file interpreted by shellscript ---"
645	printf "\n -t allowed cpu-time in seconds (batch) 0"
646	printf "\n -T tasks per node depending on -h"
647	printf "\n -u username on remote machine \"\" "
648	printf "\n -v no prompt for confirmation ---"
649	printf "\n -w maximum parallel io streams as given by -X"
650	printf "\n -x tracing of mrun for debug purposes ---"
651	printf "\n -X # of processors (on parallel machines) 1"
652	printf "\n -y add appendix \"_O\" to all local output"
653	printf "\n files (ocean precursor runs followed by"
654	printf "\n coupled atmosphere-ocean runs) ---"
655	printf "\n -Y run coupled model, \"#1 #2\" with"
656	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
657	printf "\n -z disable a priori parameter file check ---"
658	printf "\n -Z skip combine_plot_fields at the end of "
659	printf "\n the simulation ---"
660	printf "\n "
661	printf "\n Possible values of positional parameter <modus>:"
662	printf "\n \"?\" - this outline \n\n") \| more
663	exit
664	elif [[ "$1" != "" ]]
665	then
666	printf "\n +++ positional parameter $1 unknown \n"
667	locat=parameter; exit
668	fi
669
670
671
672	# KURZE STARTMELDUNG
673	printf "\n*** $version "
674	printf "\n will be executed. Please wait ..."
675
676
677
678	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
679	if [[ ! -f $config_file ]]
680	then
681	printf "\n\n +++ configuration file: "
682	printf "\n $config_file"
683	printf "\n does not exist"
684	locat=connect; exit
685	fi
686
687
688	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
689	line=""
690	grep "%host_identifier" $config_file > tmp_mrun
691	while read line
692	do
693	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
694	then
695	HOSTNAME=`echo $line \| cut -d" " -s -f2`
696	host_identifier=`echo $line \| cut -d" " -s -f3`
697	if [[ $localhost_realname = $HOSTNAME ]]
698	then
699	localhost=$host_identifier
700	break
701	fi
702	fi
703	done < tmp_mrun
704
705	if [[ "$localhost" = "" ]]
706	then
707	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
708	printf "\n for local host \"$localhost_realname\"."
709	printf "\n Please add line"
710	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
711	printf "\n to the configuration file."
712	locat=localhost; exit
713	fi
714
715
716	# HOSTSPEZIFISCHE VARIABLEN SETZEN
717	case $localhost_realname in
718	(r1\|r2\|h01\|b01) archive_system=tivoli;;
719	(cs*) archive_system=ut;;
720	(fimm.bccs.uib.no) fimm=true;;
721	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
722	(scirocco) scirocco=true;;
723	esac
724
725
726
727	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
728	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
729	[[ "$afname" = "" ]] && afname=$fname
730
731
732	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
733	if [[ "$run_mode" != "" ]]
734	then
735	input_list="$input_list $run_mode"
736	output_list="$output_list $run_mode"
737	fi
738
739
740	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
741	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
742	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
743	# STARTET)
744	if [[ "$fromhost" = "" ]]
745	then
746	fromhost=$localhost
747	fi
748
749
750	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
751	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
752	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
753	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
754	if [[ -n $host && "$host" != $localhost ]]
755	then
756	do_batch=true
757	do_remote=true
758	case $host in
759	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
760	(*) printf "\n"
761	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
762	printf "\n is not available"
763	locat=nqs; (( iec = 0 )); exit;;
764	esac
765	else
766	host=$localhost
767	fi
768
769
770	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
771	if [[ -n $additional_conditions ]]
772	then
773	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
774	cond1=`echo $additional_conditions \| cut -d" " -f1`
775	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
776	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
777	if [[ -n $dummy ]]
778	then
779	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
780	locat=options; exit
781	fi
782	block=_$cond1
783	[[ -n $cond2 ]] && block=${block}_$cond2
784	fi
785
786
787	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
788	if [[ $run_coupled_model = true ]]
789	then
790
791	if [[ -n $coupled_dist ]]
792	then
793
794	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
795	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
796
797	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
798	then
799
800	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
801	printf "\n PEs (total) : $numprocs"
802	printf "\n PEs (atmosphere): $numprocs_atmos"
803	printf "\n PEs (ocean) : $numprocs_ocean"
804	locat=coupling; exit
805
806	fi
807
808	else
809
810	(( numprocs_ocean = $numprocs / 2 ))
811	(( numprocs_atmos = $numprocs / 2 ))
812
813	fi
814	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
815
816	# GET coupled_mode FROM THE CONFIG FILE
817	line=""
818	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
819	while read line
820	do
821	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
822	then
823	coupled_mode="mpi2"
824	fi
825	done < tmp_mrun
826
827	fi
828
829
830	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
831	# ARCHIVIERUNG FEHLGESCHLAGEN IST
832	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
833	then
834	if [[ $ignore_archive_error = false ]]
835	then
836	printf "\n +++ data archiving of previous run failed"
837	printf "\n see directory \~/job_queue on remote machine"
838	locat=archive; exit
839	else
840	printf "\n +++ warning: data archiving in a previous run failed"
841	printf "\n MRUN continues, trying to get backup copy"
842	fi
843	fi
844
845
846
847	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
848	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
849	if [[ "$read_from_config" = false ]]
850	then
851
852	[[ $silent = false ]] && printf "\n Reading the configuration file... "
853	while read zeile
854	do
855	[[ $silent = false ]] && printf "."
856
857
858	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
859	# ERSETZEN
860	eval zeile=\"$zeile\"
861
862
863	# INTERPRETATION DER ZEILE
864	if [[ "$(echo $zeile)" = "" ]]
865	then
866	# LEERZEILE, KEINE AKTION
867	continue
868
869	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
870	then
871
872	# ZEILE IST KOMMENTARZEILE
873	true
874
875	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
876	then
877
878	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
879	zeile=$(echo $zeile \| cut -c2-)
880	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
881	var=`echo $zeile \| cut -d" " -f1`
882	value=`echo $zeile \| cut -d" " -s -f2`
883	for_host=`echo $zeile \| cut -d" " -s -f3`
884	for_cond1=`echo $zeile \| cut -d" " -s -f4`
885	for_cond2=`echo $zeile \| cut -d" " -s -f5`
886
887	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
888	then
889
890	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
891	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
892	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
893
894
895	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
896	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
897	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
898	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
899	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
900	# KONFIGURATIONSDATEI
901	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
902	then
903	eval $var=\$value
904
905	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
906	if [[ $do_trace = true ]]
907	then
908	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
909	fi
910	fi
911
912	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
913	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
914	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
915	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
916	if [[ $var = host ]]
917	then
918	if [[ -n $host && "$host" != $localhost ]]
919	then
920	do_batch=true
921	do_remote=true
922	case $host in
923	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
924	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
925	printf "\n is not available"
926	locat=nqs; exit;;
927	esac
928	else
929	host=$localhost
930	fi
931	fi
932
933	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
934	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
935	# DEN PROGRAMMEN BENOETIGT WERDEN
936	export $var
937	fi
938
939
940
941
942	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
943	then
944
945	# ZEILE DEFINIERT ERROR-KOMMANDO
946	(( iec = iec + 1 ))
947	zeile=$(echo $zeile \| cut -c4-)
948	err_command[$iec]="$zeile"
949
950	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
951	then
952
953	# ZEILE DEFINIERT INPUT-KOMMANDO
954	(( iic = iic + 1 ))
955	zeile=$(echo $zeile \| cut -c4-)
956	in_command[$iic]="$zeile"
957
958	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
959	then
960
961	# ZEILE DEFINIERT OUTPUT-KOMMANDO
962	(( ioc = ioc + 1 ))
963	zeile=$(echo $zeile \| cut -c4-)
964	out_command[$ioc]="$zeile"
965
966	else
967
968	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
969	# s2a: in/out - Feld
970	# s2b: loc - Feld (optional)
971	# s2c: tr/ar - Feld (optional)
972	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
973	s1=`echo $zeile \| cut -d" " -f1`
974	s2=`echo $zeile \| cut -d" " -s -f2`
975	s2a=$(echo $s2 \| cut -d":" -f1)
976	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
977	then
978	s2b=""
979	s2c=""
980	else
981	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
982	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
983	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
984	fi
985	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
986	s3=`echo $zeile \| cut -d" " -f3`
987	s4=`echo $zeile \| cut -d" " -s -f4`
988	s5=`echo $zeile \| cut -d" " -s -f5`
989	s6=`echo $zeile \| cut -d" " -s -f6`
990
991
992	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
993	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
994	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
995	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
996	# HANDEN SEIN MUSS (D.H. s2b = loc)
997	IFSALT="$IFS"; IFS="$IFS:"
998	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
999	then
1000	found=false
1001	for actual in $input_list
1002	do
1003	for formal in $s3
1004	do
1005	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
1006	done
1007	done
1008	if [[ $found = true ]]
1009	then
1010	(( iin = iin + 1 ))
1011	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
1012	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
1013	extin[$iin]=$s6
1014	fi
1015	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
1016	then
1017	found=false
1018	for actual in $output_list
1019	do
1020	for formal in $s3
1021	do
1022	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
1023	done
1024	done
1025	if [[ $found = true ]]
1026	then
1027	(( iout = iout + 1 ))
1028	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
1029	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
1030	fi
1031	elif [[ "$s2a" != in && "$s2a" != out ]]
1032	then
1033	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
1034	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
1035	locat=connect; exit
1036	fi
1037	IFS="$IFSALT"
1038	fi
1039	done < $config_file
1040
1041	else
1042
1043
1044	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
1045	[[ $silent = false ]] && printf "..."
1046	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
1047	export interpreted_config_file=.icf.$RANDOM
1048
1049
1050
1051	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1052	# VERFUEGUNG STELLEN
1053	cat > .mrun_environment << %%END%%
1054	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1055	config_file = '$config_file', do_remote = '$do_remote',
1056	do_trace = '$do_trace', host = '$host',
1057	input_list = '$input_list', icf = '$interpreted_config_file',
1058	localhost = '$localhost', output_list = '$output_list' /
1059
1060	%%END%%
1061
1062	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1063	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1064	mrun_memory=$memory
1065	mrun_group_number=$group_number
1066	mrun_cpumax=$cpumax
1067	mrun_numprocs=$numprocs
1068
1069	if [[ $localhost_realname = "sx-fep" ]]
1070	then
1071	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1072	else
1073
1074	if [[ "$host" != $localhost ]]
1075	then
1076
1077	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1078	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1079	if [[ $? != 0 ]]
1080	then
1081	printf "\n\n +++ no interpret_config found"
1082	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1083	locat=interpret_config; exit
1084	fi
1085	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1086	$interpret_config_executable
1087
1088	else
1089
1090	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1091	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1092	then
1093	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1094	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1095	locat=interpret_config; exit
1096	else
1097	interpret_config${block}.x
1098	fi
1099
1100	fi
1101	fi
1102	rm .mrun_environment
1103
1104
1105	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1106	chmod u+x $interpreted_config_file
1107	export PATH=$PATH:.
1108	. $interpreted_config_file
1109	rm $interpreted_config_file
1110
1111
1112	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1113	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1114	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1115	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1116	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1117	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1118	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1119
1120	fi
1121
1122
1123	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1124	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1125	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1126	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1127	if [[ "$SOURCES_COMPLETE" = "" ]]
1128	then
1129
1130	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1131	# VEREINBART WURDE
1132	source_path=""
1133	line=""
1134	grep "%source_path" $config_file > tmp_mrun
1135	while read line
1136	do
1137	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1138	then
1139	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1140	then
1141	global_source_path=`echo $line \| cut -d" " -f2`
1142	fi
1143	fi
1144	done < tmp_mrun
1145
1146	line=""
1147	found=false
1148	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1149	while read line
1150	do
1151	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1152	then
1153	if [[ $found = true ]]
1154	then
1155	printf "\n\n +++ more than one source path found in configuration file"
1156	printf "\n for local host \"$localhost\" "
1157	locat=source_path; exit
1158	fi
1159	source_path=`echo $line \| cut -d" " -f2`
1160	found=true
1161	fi
1162	done < tmp_mrun
1163	rm tmp_mrun
1164
1165	if [[ "$source_path" = "" ]]
1166	then
1167	if [[ "$global_source_path" != "" ]]
1168	then
1169	source_path=$global_source_path
1170	else
1171	printf "\n\n +++ no source path found in configuration file"
1172	printf "\n for local host \"$localhost\" "
1173	locat=source_path; exit
1174	fi
1175	fi
1176	eval source_path=$source_path
1177
1178	if [[ ! -d $source_path ]]
1179	then
1180	printf "\n\n +++ source path \"$source_path\" on local host"
1181	printf "\n \"$localhost\" does not exist"
1182	locat=source_path; exit
1183	fi
1184
1185	fi
1186
1187
1188	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1189	# DURCH OPTION -G MITGETEILT)
1190	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1191	then
1192	global_revision=`svnversion $source_path 2>/dev/null`
1193	global_revision="Rev: $global_revision"
1194	fi
1195
1196
1197	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1198	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1199	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1200	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1201	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1202	if [[ -n $host && "$host" != $localhost ]]
1203	then
1204	do_batch=true
1205	do_remote=true
1206	case $host in
1207	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
1208	(*) printf "\n"
1209	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1210	printf "\n is not available"
1211	locat=nqs; (( iec = 0 )); exit;;
1212	esac
1213	else
1214	host=$localhost
1215	fi
1216
1217
1218	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1219	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1220	then
1221
1222	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1223	if [[ ! -n $numprocs ]]
1224	then
1225	printf "\n"
1226	printf "\n +++ option \"-K parallel\" requires additional specification"
1227	printf "\n of the number of processors to be used by"
1228	printf "\n mrun-option \"-X\" or by environment-variable"
1229	printf "\n \"numprocs\" in the configuration file"
1230	locat=numprocs; (( iec = 0 )); exit
1231	fi
1232
1233	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1234	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1235	# GESAMTPROZESSORANZAHL IST
1236	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1237	then
1238	printf "\n"
1239	printf "\n +++ option \"-T\" (tasks per node) is missing"
1240	printf "\n set -T option or define tasks_per_node in the config file"
1241	locat=tasks_per_node; (( iec = 0 )); exit
1242	fi
1243	if [[ $host != lcflow && $host != lcxt5m ]]
1244	then
1245	(( ival = $tasks_per_node ))
1246	(( pes = numprocs ))
1247	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1248	# then
1249	# (( pes = pes - 1 ))
1250	# fi
1251	(( ii = pes / ival ))
1252	if (( pes - ii * ival > 0 ))
1253	then
1254	printf "\n"
1255	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1256	printf "\n divisor of the total number of processors (option \"-X\")"
1257	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1258	locat=tasks_per_node; (( iec = 0 )); exit
1259	fi
1260	fi
1261
1262
1263	# IBMY HAT NUR EINEN KNOTEN
1264	if [[ $host = ibmy ]]
1265	then
1266	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1267	then
1268	printf "\n"
1269	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1270	printf "\n total number of processors (option \"-X\")"
1271	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1272	locat=tasks_per_node; (( iec = 0 )); exit
1273	fi
1274	fi
1275
1276
1277	# SETTINGS FOR SUBJOB-COMMAND
1278	TOPT="-T $tasks_per_node"
1279	OOPT="-O $threads_per_task"
1280
1281	# GESAMTZAHL DER KNOTEN BESTIMMEN
1282	if [[ "$tasks_per_node" != "" ]]
1283	then
1284	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1285	fi
1286
1287	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1288	# SETZEN
1289	if [[ $node_usage = default ]]
1290	then
1291	if [[ $host = ibms ]]
1292	then
1293	node_usage=shared
1294	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1295	then
1296	node_usage=singlejob
1297	else
1298	node_usage=not_shared
1299	fi
1300	fi
1301
1302	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1303	then
1304	printf "\n"
1305	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1306	printf "\n \"shared\" or \"not_shared\""
1307	locat=tasks_per_node; (( iec = 0 )); exit
1308	fi
1309
1310	fi
1311
1312	# PRUEFEN, OB HOSTFILE EXISTIERT
1313	if [[ -n $hostfile ]]
1314	then
1315	if [[ ! -f $hostfile ]]
1316	then
1317	printf "\n"
1318	printf "\n +++ hostfile \"$hostfile\" does not exist"
1319	locat=hostfile; exit
1320	fi
1321	fi
1322
1323	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1324	if [[ $host = ibmy && $do_remote = false ]]
1325	then
1326	if [[ ! -f $HOME/.rhosts ]]
1327	then
1328	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1329	printf "\n\n *** file:"
1330	printf "\n $HOME/.rhosts"
1331	printf "\n was created\n"
1332	fi
1333	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1334	then
1335	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1336	printf "\n\n *** file:"
1337	printf "\n $HOME/.rhosts"
1338	printf "\n was extended by the name of the current host\n"
1339	fi
1340	fi
1341
1342
1343	# Set default value for the maximum number of parallel io streams
1344	if [[ "$maximum_parallel_io_streams" = "" ]]
1345	then
1346	maximum_parallel_io_streams=$numprocs
1347	fi
1348
1349
1350	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1351	if [[ $queue = none ]]
1352	then
1353	case $host in
1354	(ibmh) queue=no_class;;
1355	(ibmkisti) queue=class.32plus;;
1356	(ibmy) queue=parallel;;
1357	(lckiaps) queue=normal;;
1358	(lckyoto) queue=ph;;
1359	(lcsgib) queue=testq;;
1360	(lcsgih) queue=testq;;
1361	(lctit) queue=S;;
1362	(nech) queue=none;;
1363	(necriam) queue=SP;;
1364	(unics) queue=unics;;
1365	esac
1366	fi
1367
1368
1369	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1370	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1371	# ERMITTELN
1372	(( i = 0 ))
1373	while (( i < iin ))
1374	do
1375	(( i = i + 1 ))
1376	(( maxcycle = 0 ))
1377
1378	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1379	if [[ "${actionin[$i]}" = di ]]
1380	then
1381	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1382	# REM-MASCHINE AUSWERTEN
1383	eval filename=${pathin[$i]}/${endin[$i]}
1384	else
1385	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1386	# REM-MASCHINE AUSWERTEN
1387	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1388	fi
1389	eval pathname=${pathin[$i]}
1390
1391	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1392	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1393	then
1394	filename_input=$filename
1395	fi
1396
1397	# PRUEFEN AUF VORHANDENSEIN
1398	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1399	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1400	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1401	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1402	then
1403	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1404	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1405	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1406	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1407	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1408	if [[ "${transin[$i]}" != "locopt" ]]
1409	then
1410	printf "\n\n +++ INPUT-file: "
1411	if [[ "${extin[$i]}" = "" ]]
1412	then
1413	printf "\n $filename"
1414	else
1415	printf "\n $filename.${extin[$i]}"
1416	fi
1417	printf "\n does not exist\n"
1418	locat=input; exit
1419	else
1420	transin[$i]="unavailable"
1421	fi
1422	else
1423
1424	# ZYKLUSNUMMER FESTSTELLEN
1425	ls -1 -d $filename > filelist 2>/dev/null
1426	ls -1 -d $filename.* >> filelist 2>/dev/null
1427	while read zeile
1428	do
1429	cycle=$(print $zeile \| cut -f2 -d".")
1430	if [[ "$cycle" = "$zeile" ]]
1431	then
1432	(( icycle = 0 ))
1433	elif [[ "$cycle" = "${extin[$i]}" ]]
1434	then
1435	(( icycle = 0 ))
1436	else
1437	(( icycle = $cycle ))
1438	fi
1439	if (( icycle > maxcycle ))
1440	then
1441	(( maxcycle = icycle ))
1442	file_to_be_used=$zeile
1443	fi
1444	done <filelist
1445	rm filelist
1446
1447	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1448	if (( maxcycle > 0 ))
1449	then
1450	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1451	then
1452	filename=${filename}.$maxcycle.${extin[$i]}
1453	else
1454	filename=${filename}.$maxcycle
1455	fi
1456	else
1457	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1458	then
1459	filename=${filename}.${extin[$i]}
1460	fi
1461	fi
1462
1463	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1464	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1465	absnamein[$i]=$filename
1466	if (( maxcycle > 0 ))
1467	then
1468	if [[ "${actionin[$i]}" = di ]]
1469	then
1470	frelin[$i]=${endin[$i]}.$maxcycle
1471	else
1472	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1473	fi
1474	else
1475	if [[ "${actionin[$i]}" = di ]]
1476	then
1477	frelin[$i]=${endin[$i]}
1478	else
1479	frelin[$i]=${afname}${endin[$i]}
1480	fi
1481	fi
1482
1483	fi
1484	done
1485
1486	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1487	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1488	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1489	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1490	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1491	(( i = 0 ))
1492	while (( i < iout ))
1493	do
1494	(( i = i + 1 ))
1495	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1496	then
1497	if [[ "${actionout[$i]}" = tr ]]
1498	then
1499	actionout[$i]=""
1500	elif [[ "${actionout[$i]}" = trpe ]]
1501	then
1502	actionout[$i]=pe
1503	elif [[ "${actionout[$i]}" = tra ]]
1504	then
1505	actionout[$i]=a
1506	fi
1507	(( maxcycle = 0 ))
1508	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1509	eval catalogname=${pathout[$i]}
1510	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1511	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1512	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1513	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1514	then
1515
1516	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1517	if cat /dev/null > $filename
1518	then
1519	rm $filename
1520	else
1521
1522	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1523	if [[ ! -d $catalogname ]]
1524	then
1525	if mkdir -p $catalogname
1526	then
1527	printf "\n\n *** directory:"
1528	printf "\n $catalogname"
1529	printf "\n was created\n"
1530	else
1531	printf "\n\n +++ OUTPUT-file:"
1532	printf "\n $filename"
1533	printf "\n cannot be created, because directory does not exist"
1534	printf "\n and cannot be created either"
1535	printf "\n"
1536	locat=output ; exit
1537	fi 2>/dev/null
1538	else
1539	printf "\n\n +++ OUTPUT-file:"
1540	printf "\n $filename"
1541	printf "\n cannot be created, although directory exists"
1542	printf "\n"
1543	locat=output ; exit
1544	fi
1545	fi 2>/dev/null
1546	else
1547
1548	# ZYKLUSNUMMER FESTSTELLEN
1549	ls -1 -d $filename > filelist 2>/dev/null
1550	ls -1 -d $filename.* >> filelist 2>/dev/null
1551	while read zeile
1552	do
1553	cycle=$(print $zeile \| cut -f2 -d".")
1554	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1555	then
1556	(( icycle = 1 ))
1557	else
1558	(( icycle = $cycle + 1 ))
1559	fi
1560	if (( icycle > maxcycle ))
1561	then
1562	(( maxcycle = icycle ))
1563	fi
1564	done <filelist
1565	rm filelist
1566	fi
1567
1568	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1569	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1570	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1571	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1572	if [[ "${actionout[$i]}" != a ]]
1573	then
1574	if (( maxcycle > 0 ))
1575	then
1576	filename=${filename}.$maxcycle
1577	if cat /dev/null > $filename
1578	then
1579	rm $filename
1580	else
1581	printf "\n +++ OUTPUT-file:"
1582	printf "\n $filename"
1583	printf "\n cannot be created"
1584	locat=output ; exit
1585	fi
1586	fi
1587	else
1588	(( maxcycle = maxcycle - 1 ))
1589	if (( maxcycle > 0 ))
1590	then
1591	filename=${filename}.$maxcycle
1592	fi
1593	fi
1594
1595	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1596	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1597	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1598	pathout[$i]=$filename
1599	if (( maxcycle > 0 ))
1600	then
1601	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1602	else
1603	frelout[$i]=${fname}${endout[$i]}
1604	fi
1605
1606	fi
1607	done
1608
1609
1610	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1611	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1612	then
1613	if [[ "$dvr_inc" = "" ]]
1614	then
1615	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1616	printf "\n This is required for the dvrp_graphics package.\n"
1617	locat=dvr; exit
1618	fi
1619	if [[ "$dvr_lib" = "" ]]
1620	then
1621	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1622	printf "\n This is required for the dvrp_graphics package.\n"
1623	locat=dvr; exit
1624	fi
1625	fi
1626
1627
1628	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1629	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1630	# UEBERSETZT ZU WERDEN)
1631	if [[ "$mainprog" = "" && "$executable" = "" ]]
1632	then
1633	printf "\n +++ neither main program nor executable defined"
1634	locat=source; exit
1635	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1636	then
1637	printf "\n +++ main program as well as executable defined"
1638	locat=source; exit
1639	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1640	then
1641	do_compile=false
1642	fi
1643
1644
1645	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1646	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1647	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1648	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1649	then
1650	rm -rf SOURCES_FOR_RUN_$fname
1651	mkdir SOURCES_FOR_RUN_$fname
1652	fi
1653
1654
1655	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1656	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1657	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1658	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1659	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1660	then
1661
1662	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1663
1664	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1665	then
1666
1667	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1668	source_list=""
1669	cd $source_path
1670
1671
1672	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1673	if [[ ! -d .svn ]]
1674	then
1675	printf "\n\n +++ source directory"
1676	printf "\n \"$source_path\" "
1677	printf "\n is not under control of \"subversion\"."
1678	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1679	fi
1680
1681
1682	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1683	Filenames=""
1684	svn status > tmp_mrun
1685	while read line
1686	do
1687	firstc=`echo $line \| cut -c1`
1688	if [[ $firstc = M \|\| $firstc = "?" ]]
1689	then
1690	Name=`echo "$line" \| cut -c8-`
1691	extension=`echo $Name \| cut -d. -f2`
1692	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1693	then
1694	Filenames="$Filenames "$Name
1695	fi
1696	fi
1697	done < tmp_mrun
1698
1699
1700	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1701	for dateiname in $Filenames
1702	do
1703	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1704	source_list=$source_list"$dateiname "
1705	done
1706
1707	cd - > /dev/null
1708
1709
1710	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1711	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1712	# VORHANDEN
1713	elif [[ "$source_list" != "" && $restart_run != true ]]
1714	then
1715
1716	cd $source_path
1717
1718	for filename in $source_list
1719	do
1720
1721	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1722	if [[ $(print $filename \| grep -c "/") != 0 ]]
1723	then
1724	printf "\n +++ source code file: $filename"
1725	printf "\n must not contain (\"/\") "
1726	locat=source; exit
1727	fi
1728
1729	if [[ ! -f $filename ]]
1730	then
1731	printf "\n +++ source code file: $filename"
1732	printf "\n does not exist"
1733	locat=source; exit
1734	else
1735	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1736	fi
1737
1738	done
1739
1740	cd - > /dev/null
1741
1742	fi
1743
1744
1745	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1746	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1747	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1748	if [[ $restart_run != true ]]
1749	then
1750
1751	if [[ ! -f "$source_path/$mainprog" ]]
1752	then
1753	printf "\n\n +++ main program: $mainprog"
1754	printf "\n does not exist in source directory"
1755	printf "\n \"$source_path\"\n"
1756	locat=source; exit
1757	else
1758	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1759	then
1760	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1761	source_list=${mainprog}" $source_list"
1762	fi
1763	fi
1764	fi
1765
1766
1767	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1768	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1769	if [[ "$restart_run" != true ]]
1770	then
1771	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1772	if [[ ! -f $makefile ]]
1773	then
1774	printf "\n +++ file \"$makefile\" does not exist"
1775	locat=make; exit
1776	else
1777	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1778	fi
1779	fi
1780
1781
1782	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1783	if [[ $restart_run != true && "$add_source_path" != "" ]]
1784	then
1785
1786	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1787	if [[ ! -d $add_source_path ]]
1788	then
1789	printf "\n\n +++ WARNING: additional source code directory"
1790	printf "\n \"$add_source_path\" "
1791	printf "\n does not exist or is not a directory."
1792	printf "\n No source code will be used from this directory!\n"
1793	add_source_path=""
1794	if [[ $silent == false ]]
1795	then
1796	sleep 3
1797	fi
1798	else
1799
1800	cd $add_source_path
1801	found=false
1802
1803	Names=$(ls -1 *.f90 2>&1)
1804	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1805	Names=$(ls -1 *.F90 2>&1)
1806	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1807	Names=$(ls -1 *.F 2>&1)
1808	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1809	Names=$(ls -1 *.f 2>&1)
1810	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1811	Names=$(ls -1 *.c 2>&1)
1812	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1813
1814	cd - > /dev/null
1815	cd SOURCES_FOR_RUN_$fname
1816
1817	# COPY MAKEFILE IF EXISTING
1818	if [[ -f $add_source_path/Makefile ]]
1819	then
1820	printf "\n\n *** user Makefile from directory"
1821	printf "\n \"$add_source_path\" is used \n"
1822	if [[ $silent == false ]]
1823	then
1824	sleep 1
1825	fi
1826	cp $add_source_path/Makefile .
1827	fi
1828
1829	for dateiname in $AddFilenames
1830	do
1831	if [[ -f $dateiname ]]
1832	then
1833	printf "\n +++ source code file \"$dateiname\" found in additional"
1834	printf "\n source code directory \"$add_source_path\" "
1835	printf "\n but was also given with option \"-s\" which means that it should be taken"
1836	printf "\n from directory \"$source_path\"."
1837	locat=source; exit
1838	fi
1839
1840	cp $add_source_path/$dateiname .
1841	source_list="$source_list $dateiname"
1842
1843	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1844	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1845	then
1846	printf "\n\n +++ user file \"$dateiname\" "
1847	printf "\n is not listed in Makefile \n"
1848	locat=source; exit
1849	else
1850
1851	# Default User-Interface von der Liste entfernen, falls Datei
1852	# ein User-Interface enthaelt
1853	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1854	# then
1855	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1856	# then
1857	# rm -rf user_interface.f90
1858	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1859	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1860	# printf "\n since a user-interface is found in file"
1861	# printf "\n \"$add_source_path/$dateiname\" \n"
1862	# sleep 3
1863	# else
1864	if [[ $found = false ]]
1865	then
1866	found=true
1867	printf "\n\n *** following user file(s) added to the"
1868	printf " files to be translated:\n "
1869	fi
1870	printf "$dateiname "
1871	if [[ $silent == false ]]
1872	then
1873	sleep 0.5
1874	fi
1875
1876	fi
1877	done
1878	[[ $found = true ]] && printf "\n"
1879	cd - > /dev/null
1880	fi
1881	fi
1882
1883
1884	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1885	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1886	if [[ $restart_run != true && -n $package_list ]]
1887	then
1888
1889	cd $source_path
1890
1891	for package in $package_list
1892	do
1893
1894	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1895
1896	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1897	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1898	# LIEFERT
1899	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1900
1901
1902	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1903	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1904	for source_list_name in $package_source_list
1905	do
1906	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1907	then
1908
1909	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1910	ending=`echo $source_list_name \| cut -f2 -d.`
1911	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1912	then
1913	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1914	source_list="$source_list $source_list_name"
1915	fi
1916	fi
1917	done
1918	done
1919
1920	cd - > /dev/null
1921	fi
1922
1923
1924	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1925	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1926	# if [[ "$restart_run" != true ]]
1927	# then
1928	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1929	# if [[ ! -f $makefile ]]
1930	# then
1931	# printf "\n +++ file \"$makefile\" does not exist"
1932	# locat=make; exit
1933	# else
1934	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1935	# fi
1936	# fi
1937
1938	fi # do_compile=true
1939
1940
1941	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1942	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1943	if [[ $do_compile = true ]]
1944	then
1945
1946	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1947	# ZUSAMMENSETZEN
1948	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1949	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1950	then
1951	cpp_options="${cpp_options},-D__ibm=__ibm"
1952	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1953	then
1954	cpp_options="$cpp_options -D__nec"
1955	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1956	then
1957	cpp_options="$cpp_options -D__lc"
1958	else
1959	cpp_options="$cpp_options -D__$localhost"
1960	fi
1961
1962	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1963	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1964	then
1965	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1966	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1967	else
1968	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1969	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1970	fi
1971
1972	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1973	if [[ -n $package_list ]]
1974	then
1975	for package in $package_list
1976	do
1977	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1978	then
1979	if [[ $package != "dvrp_graphics+1PE" ]]
1980	then
1981	cpp_options="${cpp_options},-D__$package=__$package"
1982	else
1983	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1984	export use_seperate_pe_for_dvrp_output=true
1985	fi
1986	else
1987	if [[ $package != "dvrp_graphics+1PE" ]]
1988	then
1989	cpp_options="$cpp_options -D__$package"
1990	else
1991	cpp_options="$cpp_options -D__dvrp_graphics"
1992	export use_seperate_pe_for_dvrp_output=true
1993	fi
1994	fi
1995	done
1996	fi
1997
1998	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1999	if [[ -n $cpp_opts ]]
2000	then
2001	for popts in $cpp_opts
2002	do
2003	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
2004	then
2005	cpp_options="${cpp_options},-D__$popts=__$popts"
2006	else
2007	cpp_options="$cpp_options -D__$popts"
2008	fi
2009	done
2010	fi
2011
2012	else
2013
2014
2015	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
2016	if [[ $do_remote = false ]]
2017	then
2018	if [[ ! -f $executable ]]
2019	then
2020	printf "\n +++ executable file: $executable"
2021	printf "\n does not exist"
2022	locat=executable; exit
2023	fi
2024	fi
2025	fi
2026
2027
2028	# JOBMODUS FESTSTELLEN
2029	if [[ "$ENVIRONMENT" = BATCH ]]
2030	then
2031	jobmo=BATCH
2032	else
2033	jobmo=INTERACTIVE
2034	fi
2035
2036
2037	# no interactive runs on lctit
2038	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2039	then
2040	printf "\n +++ no interactive runs allowed on host \"$host\" "
2041	printf "\n please submit batch job using mrun option \"-b\" \n"
2042	locat=normal; exit
2043	fi
2044
2045
2046	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2047	# DURCH BENUTZER ANDERWEITIG VEREINBART
2048	if [[ "$compiler_name" = "" ]]
2049	then
2050
2051	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2052	locat=compiler_name; exit
2053
2054	fi
2055
2056
2057	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2058	[[ $localhost = necriam ]] && compiler_name=mpif90
2059
2060
2061
2062	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2063	kennung=$RANDOM
2064	if [[ "$tmp_user_catalog" = "" ]]
2065	then
2066	if [[ $localhost = ibmh ]]
2067	then
2068	tmp_user_catalog=$SCRATCH
2069	elif [[ $localhost = nech ]]
2070	then
2071	tmp_user_catalog=$WRKSHR
2072	else
2073	tmp_user_catalog=/tmp
2074	fi
2075	fi
2076	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2077
2078
2079	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2080	# BESTIMMEN
2081	if [[ "$tmp_data_catalog" = "" ]]
2082	then
2083	if [[ $localhost = nech ]]
2084	then
2085	tmp_data_catalog=$WRKSHR/mrun_restart_data
2086	else
2087	tmp_data_catalog=/tmp/mrun_restart_data
2088	fi
2089	fi
2090
2091
2092	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2093	# ERSETZEN
2094	if [[ $do_remote = false && $do_compile = true ]]
2095	then
2096	eval fopts=\"$fopts\"
2097	eval lopts=\"$lopts\"
2098	fi
2099
2100
2101
2102	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2103	fopts="$fopts $netcdf_inc $dvr_inc"
2104	lopts="$lopts $netcdf_lib $dvr_lib"
2105	ROPTS="$ropts"
2106	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
2107	then
2108	XOPT="-X $numprocs"
2109	fi
2110
2111
2112
2113	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2114	# GRAMM BENOETIGT
2115	done=false
2116	while [[ $done = false ]]
2117	do
2118	cputime=$cpumax
2119	if (( $cputime == 0 ))
2120	then
2121	if [[ $do_batch = true ]]
2122	then
2123	printf "\n +++ cpu-time is undefined"
2124	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2125	printf "\n >>> "
2126	read cputime 1>/dev/null 2>&1
2127	else
2128	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2129	fi
2130	else
2131	done=true
2132	fi
2133	cpumax=$cputime
2134	done
2135
2136	(( minuten = cputime / 60 ))
2137	(( sekunden = cputime - minuten * 60 ))
2138
2139
2140	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2141	if [[ $do_batch = true ]]
2142	then
2143	done=false
2144	while [[ $done = false ]]
2145	do
2146	if (( memory == 0 ))
2147	then
2148	printf "\n +++ memory demand is undefined"
2149	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2150	printf "\n >>> "
2151	read memory 1>/dev/null 2>&1
2152	else
2153	done=true
2154	fi
2155	done
2156	fi
2157
2158
2159	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2160	if [[ $do_remote = true && -z $remote_username ]]
2161	then
2162	while [[ -z $remote_username ]]
2163	do
2164	printf "\n +++ username on remote host \"$host\" is undefined"
2165	printf "\n >>> Please type username:"
2166	printf "\n >>> "
2167	read remote_username
2168	done
2169	mc="$mc -u$remote_username"
2170	fi
2171
2172	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2173	if [[ "$login_init_cmd" != "" ]]
2174	then
2175	export init_cmds="${login_init_cmd};"
2176	fi
2177
2178
2179	# set module load command and export for subjob
2180	if [[ "$modules" != "" ]]
2181	then
2182	if [[ $host = lctit ]]
2183	then
2184	export module_calls=". $modules"
2185	else
2186	export module_calls="module load ${modules};"
2187	fi
2188	fi
2189
2190	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2191	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2192	then
2193	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2194	then
2195	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2196	fi
2197	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2198	# then
2199	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2200	# echo "*** module_calls = $module_calls"
2201	# fi
2202	fi
2203
2204
2205	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2206	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2207	then
2208	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2209	then
2210	mpilib=mpt
2211	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2212	then
2213	mpilib=mvapich
2214	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2215	then
2216	mpilib=impi
2217	fi
2218	fi
2219
2220
2221
2222	###########################################################################
2223	# HEADER-AUSGABE
2224	###########################################################################
2225
2226
2227	calltime=$(date)
2228	printf "\n"
2229	# [[ $silent = false ]] && clear
2230	printf "#--------------------------------------------------------------# \n"
2231	printf "\| $version$calltime \| \n"
2232	printf "\| \| \n"
2233	spalte1="called on:"; spalte2=$localhost_realname
2234	printf "\| $spalte1$spalte2 \| \n"
2235	if [[ $local_compile = false ]]
2236	then
2237	if [[ $do_remote = true ]]
2238	then
2239	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2240	else
2241	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2242	fi
2243	else
2244	spalte1="compiling test only!"; spalte2=""
2245	fi
2246	printf "\| $spalte1$spalte2 \| \n"
2247	if [[ -n $numprocs ]]
2248	then
2249	spalte1="number of PEs:"; spalte2=$numprocs
2250	printf "\| $spalte1$spalte2 \| \n"
2251	fi
2252	if [[ -n $tasks_per_node ]]
2253	then
2254	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2255	printf "\| $spalte1$spalte2 \| \n"
2256	fi
2257	if [[ $maximum_parallel_io_streams != $numprocs ]]
2258	then
2259	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2260	printf "\| $spalte1$spalte2 \| \n"
2261	fi
2262	if [[ $use_openmp = true ]]
2263	then
2264	spalte1="threads per task:"; spalte2="$threads_per_task"
2265	printf "\| $spalte1$spalte2 \| \n"
2266	fi
2267	printf "\| \| \n"
2268	if [[ $do_compile = true ]]
2269	then
2270	if [[ "$mopts" != "" ]]
2271	then
2272	spalte1="make options:"; spalte2=$mopts
2273	printf "\| $spalte1$spalte2 \| \n"
2274	zeile=$(echo "$mopts" \| cut -c41-)
2275	while [[ "$zeile" != "" ]]
2276	do
2277	spalte1=""
2278	spalte2=$zeile
2279	printf "\| $spalte1$spalte2 \| \n"
2280	zeile=$(echo "$zeile" \| cut -c41-)
2281	done
2282	fi
2283
2284	spalte1="cpp directives:"; spalte2=$cpp_options
2285	printf "\| $spalte1$spalte2 \| \n"
2286	zeile=$(echo "$cpp_options" \| cut -c41-)
2287	while [[ "$zeile" != "" ]]
2288	do
2289	spalte1=""
2290	spalte2=$zeile
2291	printf "\| $spalte1$spalte2 \| \n"
2292	zeile=$(echo "$zeile" \| cut -c41-)
2293	done
2294
2295	spalte1="compiler options:"; spalte2="$fopts"
2296	printf "\| $spalte1$spalte2 \| \n"
2297	zeile=$(echo "$fopts" \| cut -c41-)
2298	while [[ "$zeile" != "" ]]
2299	do
2300	spalte1=""
2301	spalte2=$zeile
2302	printf "\| $spalte1$spalte2 \| \n"
2303	zeile=$(echo "$zeile" \| cut -c41-)
2304	done
2305
2306	spalte1="linker options:"; spalte2=$lopts
2307	printf "\| $spalte1$spalte2 \| \n"
2308	zeile=$(echo "$lopts" \| cut -c41-)
2309	while [[ "$zeile" != "" ]]
2310	do
2311	spalte1=""
2312	spalte2=$zeile
2313	printf "\| $spalte1$spalte2 \| \n"
2314	zeile=$(echo "$zeile" \| cut -c41-)
2315	done
2316
2317	spalte1="modules to be load:"; spalte2=$modules
2318	printf "\| $spalte1$spalte2 \| \n"
2319	zeile=$(echo "$modules" \| cut -c41-)
2320	while [[ "$zeile" != "" ]]
2321	do
2322	spalte1=""
2323	spalte2=$zeile
2324	printf "\| $spalte1$spalte2 \| \n"
2325	zeile=$(echo "$zeile" \| cut -c41-)
2326	done
2327
2328	spalte1="main program":; spalte2=$mainprog
2329	printf "\| $spalte1$spalte2 \| \n"
2330	else
2331	spalte1=executable:; spalte2=$executable
2332	printf "\| $spalte1$spalte2 \| \n"
2333	fi
2334	printf "\| \| \n"
2335	spalte1="base name of files":; spalte2=$fname
2336	printf "\| $spalte1$spalte2 \| \n"
2337	if [[ $fname != $afname ]]
2338	then
2339	spalte1="base name of input files":; spalte2=$afname
2340	printf "\| $spalte1$spalte2 \| \n"
2341	fi
2342	spalte1="INPUT control list":; spalte2=$input_list
2343	printf "\| $spalte1$spalte2 \| \n"
2344	spalte1="OUTPUT control list":; spalte2=$output_list
2345	printf "\| $spalte1$spalte2 \| \n"
2346
2347	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2348	then
2349	spalte1="memory demand / PE":; spalte2="$memory MB"
2350	printf "\| $spalte1$spalte2 \| \n"
2351	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2352	printf "\| $spalte1$spalte2 \| \n"
2353	fi
2354
2355	if [[ $do_compile = true ]]
2356	then
2357	printf "\| \| \n"
2358	printf "\| Files to be compiled: \| \n"
2359	zeile=$source_list
2360	while [[ "$zeile" != "" ]]
2361	do
2362	spalte3=$zeile
2363	printf "\| $spalte3 \| \n"
2364	zeile=$(echo "$zeile" \| cut -c61-)
2365	done
2366	fi
2367	printf "#--------------------------------------------------------------#"
2368
2369
2370
2371	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2372	if [[ $do_trace = true ]]
2373	then
2374	(( i = 0 ))
2375	while (( i < iin ))
2376	do
2377	(( i = i + 1 ))
2378	if (( i == 1 ))
2379	then
2380	printf "\n\n >>> INPUT-file assignments:\n"
2381	fi
2382	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2383	done
2384	(( i = 0 ))
2385	while (( i < iout ))
2386	do
2387	(( i = i + 1 ))
2388	if (( i == 1 ))
2389	then
2390	printf "\n\n >>> OUTPUT-file assignments:\n"
2391	fi
2392	printf "\n ${localout[$i]} : ${pathout[$i]}"
2393	done
2394	(( i = 0 ))
2395	while (( i < iic ))
2396	do
2397	(( i = i + 1 ))
2398	if (( i == 1 ))
2399	then
2400	printf "\n\n >>> INPUT-commands:\n"
2401	fi
2402	printf "\n ${in_command[$i]}"
2403	done
2404	(( i = 0 ))
2405	while (( i < ioc ))
2406	do
2407	(( i = i + 1 ))
2408	if (( i == 1 ))
2409	then
2410	printf "\n\n >>> OUTPUT-commands:\n"
2411	fi
2412	printf "\n ${out_command[$i]}"
2413	done
2414	fi
2415
2416
2417	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2418	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2419	then
2420	antwort=dummy
2421	printf "\n\n"
2422	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2423	do
2424	printf " >>> everything o.k. (y/n) ? "
2425	read antwort
2426	done
2427	if [[ $antwort = n \|\| $antwort = N ]]
2428	then
2429	locat=user_abort; (( iec = 0 )); exit
2430	fi
2431	if [[ $do_batch = true ]]
2432	then
2433	printf " >>> batch-job will be created and submitted"
2434	else
2435	if [[ $local_compile = false ]]
2436	then
2437	printf " >>> MRUN will now continue to execute on this machine"
2438	else
2439	printf " >>> a test compilation will now be carried out on this machine"
2440	fi
2441	fi
2442	fi
2443
2444	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2445
2446	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2447	check_depository="${working_directory}/trunk/UTIL"
2448	check_sources="${working_directory}/tmp_check_namelist_files"
2449	skip_check=false
2450
2451	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2452	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2453	then
2454	skip_check=true
2455	reason="run on remote host or parameter file check has not been compiled."
2456	fi
2457	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2458	then
2459	skip_check=true
2460	reason="parameter file check has not been compiled."
2461	fi
2462
2463	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2464	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2465	then
2466	skip_check=true
2467	reason="serial run."
2468	fi
2469
2470	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2471	if [[ $check_namelist_files == false ]]
2472	then
2473	skip_check=true
2474	reason="-z option set."
2475	fi
2476
2477	if [[ $fromhost != $localhost ]]
2478	then
2479	skip_check=true
2480	reason="submitting host is local host."
2481	fi
2482
2483	if [[ $run_coupled_model == true ]]
2484	then
2485	skip_check=true
2486	reason="coupled run."
2487	fi
2488
2489	if [[ $restart_run == true ]]
2490	then
2491	skip_check=true
2492	reason="restart run."
2493
2494	fi
2495
2496	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2497	((last_char = `echo $filename_input \| wc -c` - 1))
2498	last_char=`echo $filename_input \|cut -c$last_char`
2499	if [[ "$last_char" == "f" ]]
2500	then
2501	skip_check=true
2502	reason="restart run.)"
2503	fi
2504
2505	if [[ $skip_check == false ]]
2506	then
2507
2508	tmp_check=${working_directory}/tmp_check
2509
2510	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2511	# NOT NECESSARILY REQUIRED
2512	line=""
2513	found=false
2514	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2515	while read line1
2516	do
2517	line="$line1"
2518	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2519	then
2520	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2521	found=true
2522	fi
2523	done < $tmp_check
2524
2525	if [[ $found = false ]]
2526	then
2527	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2528	fi
2529
2530	rm -rf ${working_directory}/tmp_check
2531
2532	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2533	for item in $input_list
2534	do
2535	if [[ "$item" == "restart" ]]
2536	then
2537	check_restart=1
2538	else
2539	check_restart=0
2540	fi
2541	done
2542
2543	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2544	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2545	then
2546	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2547	locat=check_namelist; exit
2548	fi
2549
2550	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2551	if [[ $check_restart == 1 ]]
2552	then
2553
2554
2555
2556	filenamef="${filename_input}f"
2557	if [[ ! -f $filenamef ]]
2558	then
2559	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2560	check_restart=0
2561	answer=dummy
2562	printf "\n\n"
2563
2564	if [[ $silent == false ]]
2565	then
2566	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2567	do
2568	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2569	read answer
2570	done
2571	if [[ $answer = a \|\| $answer = A ]]
2572	then
2573	printf "\n +++ Aborting...."
2574	locat=normal; exit
2575	fi
2576	fi
2577	else
2578	check_restart=1
2579	fi
2580	fi
2581
2582	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2583	mkdir $check_sources
2584	cd $check_sources
2585
2586
2587	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2588	if [[ -d $add_source_path ]]
2589	then
2590	printf "\n\n *** copying files from $check_depository"
2591	cp $check_depository/check_namelist_files.tar ./
2592
2593	printf "\n\n *** untar of makefile and source files in $check_sources"
2594	tar -xf check_namelist_files.tar > /dev/null 2>&1
2595
2596	printf "\n\n *** adding user code."
2597	cp $add_source_path/* ./
2598	touch check_namelist_files.f90
2599
2600	# GET COMPILER OPTIONS AND PERFORM MAKE
2601	printf "\n\n *** compiling code if necessary...\n"
2602
2603	# workaround for batch jobs on local machine (lcxe6)
2604	if [[ $do_batch == true && $do_remote == false ]]
2605	then
2606	eval $init_cmds
2607	fi
2608
2609	copts_check="-cpp -D__parallel -D__check"
2610	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2611
2612	# GET MAKE OUTPUT
2613	if [[ $? != 0 ]]
2614	then
2615	printf "\n +++ error during make."
2616	answer=dummy
2617	printf "\n\n"
2618	if [[ $silent == false ]]
2619	then
2620	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2621	do
2622	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2623	read answer
2624	done
2625	if [[ $answer = a \|\| $answer = A ]]
2626	then
2627	printf "\n +++ Aborting..."
2628	rm -rf $check_sources
2629	locat=normal; exit
2630	else
2631	skip_check=true
2632	fi
2633	else
2634	skip_check=true
2635	fi
2636	fi
2637	else
2638	cp $PALM_BIN/check_namelist_files.x ./
2639	fi
2640
2641	cp $filename_input ./PARIN
2642	if [[ $check_restart == 1 ]]
2643	then
2644	cp $filenamef ./PARINF
2645	fi
2646
2647	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2648	then
2649	printf "\n *** adding topography data"
2650	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2651
2652	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2653	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2654	# WHICH REQUIRE SUFFICIENT MEMORY
2655	ulimit -s unlimited
2656	fi
2657
2658	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2659	cat > ENVPAR << %%END%%
2660	&envpar run_identifier = '$fname', host = '$host',
2661	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2662	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2663	maximum_cpu_time_allowed = ${cpumax}.,
2664	revision = '$global_revision',
2665	local_dvrserver_running = $local_dvrserver_running /
2666
2667	%%END%%
2668
2669	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2670	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2671	printf "\n +++ WARNING: check_namelist_files.x not found."
2672	answer=dummy
2673	printf "\n\n"
2674
2675	if [[ $silent == false ]]
2676	then
2677	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2678	do
2679	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2680	read answer
2681	done
2682	if [[ $answer = a \|\| $answer = A ]]
2683	then
2684	printf "\n +++ Aborting..."
2685	rm -rf $check_sources
2686	locat=normal; exit
2687	else
2688	printf "\n *** Skipping parameter file check."
2689
2690	fi
2691	fi
2692
2693	elif [[ $skip_check == false ]]
2694	then
2695	# STARTING THE PARAMETER FILE CHECK
2696	printf "\n\n *** starting parameter file check..."
2697
2698	# CHECKING THE P3D FILE
2699	printf "\n\n (1) checking $filename_input"
2700	echo "$numprocs 0 0" > VARIN
2701	errors=`./check_namelist_files.x < VARIN 2>&1`
2702
2703	check_error=false
2704	if [[ "$errors" == "" ]]
2705	then
2706	printf " --> o.k."
2707	else
2708	printf " --> failed."
2709	check_error=true
2710	printf "\n\n $errors"
2711	fi
2712
2713	# CHECKING THE PD3F FILE IF NECESSARY
2714	if [[ $check_restart == 1 && $check_error == false ]]
2715	then
2716	printf "\n\n (2) checking $filenamef"
2717
2718	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2719	found=false
2720	cat PARINF\|while read line
2721	do
2722	line=$(echo $line\|sed 's/ //g')
2723	if [[ $line == "&inipar" ]]
2724	then
2725	start_search=true
2726	fi
2727
2728	if [[ $start_search == true ]]
2729	then
2730	if [[ $line == "initializing_actions='read_restart_data'" ]]
2731	then
2732	found=true
2733	break
2734	fi
2735	fi
2736
2737	if [[ $line == "/" ]]
2738	then
2739	start_search=false
2740	fi
2741
2742	done
2743
2744	if [[ $found = false ]]
2745	then
2746	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2747	printf "\n in &inipar list in $fname$p3df_suffix."
2748	rm -rf $check_sources
2749	locat=check_namelist; exit
2750	fi
2751
2752	# READ max_user_pr FROM FILES
2753	if [[ -f parin_for_check ]]
2754	then
2755	read max_pr_user < parin_for_check
2756	else
2757	max_user_pr=0
2758	fi
2759
2760	echo "$numprocs 1 $max_pr_user" > VARIN
2761	errors=`./check_namelist_files.x < VARIN 2>&1`
2762
2763	if [[ "$errors" == "" ]]
2764	then
2765	printf " --> o.k."
2766	else
2767	printf " --> failed."
2768	check_error=true
2769	printf "\n\n $errors"
2770	fi
2771	fi
2772
2773	# REPORT ERRORS AND CONTINUE/EXIT
2774	if [[ $check_error == true ]]
2775	then
2776	printf "\n +++ errors found in the parameter file!\n"
2777	answer=dummy
2778	printf "\n\n"
2779
2780	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2781	do
2782	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2783	read answer
2784	done
2785
2786	if [[ $answer = a \|\| $answer = A ]]
2787	then
2788	printf "\n +++ Aborting..."
2789	rm -rf $check_sources
2790	locat=normal; exit
2791	fi
2792	else
2793	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2794	fi
2795	rm -rf $check_sources
2796	fi
2797	else
2798	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2799	fi
2800
2801	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2802	rm -rf $check_sources
2803	cd $working_directory
2804
2805
2806	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2807	# CHENDE AKTIONEN DURCHGEFUEHRT
2808	if [[ $do_batch = false ]]
2809	then
2810
2811
2812	# TEMPORAEREN KATALOG ERZEUGEN
2813	mkdir -p $TEMPDIR
2814	chmod go+rx $TEMPDIR
2815	tmpcreate=true
2816
2817	# set striping on lustre file system
2818	# if [[ $localhost = lcsgih ]]
2819	# then
2820	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2821	# lfs getstripe $TEMPDIR
2822	# fi
2823
2824
2825	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2826	# TEMPORAERES VERZEICHNIS KOPIEREN
2827	if [[ $do_compile = true ]]
2828	then
2829
2830	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2831	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2832	if [[ $localhost = nech ]]
2833	then
2834	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2835	if mkdir -p $TEMPDIR_COMPILE
2836	then
2837	printf "\n *** \"$TEMPDIR_COMPILE\" "
2838	printf "\n is generated as temporary directory for cross compiling\n"
2839	else
2840	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2841	printf "\n needed for cross compilation failed"
2842	locat=compile
2843	exit
2844	fi
2845	else
2846	TEMPDIR_COMPILE=$TEMPDIR
2847	fi
2848
2849
2850	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2851	line=""
2852	grep "%depository_path" $config_file > tmp_mrun
2853	while read line
2854	do
2855	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2856	then
2857	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2858	then
2859	global_depository_path=`echo $line \| cut -d" " -s -f2`
2860	fi
2861	fi
2862	done < tmp_mrun
2863
2864	line=""
2865	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2866	while read line
2867	do
2868	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2869	then
2870	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2871	then
2872	local_depository_path=`echo $line \| cut -d" " -s -f2`
2873	fi
2874	fi
2875	done < tmp_mrun
2876
2877	if [[ "$local_depository_path" = "" ]]
2878	then
2879	if [[ "$global_depository_path" != "" ]]
2880	then
2881	local_depository_path=$global_depository_path
2882	else
2883	printf "\n\n +++ no depository path found in configuration file"
2884	printf "\n for local host \"$localhost\" "
2885	printf "\n please set \"\%depository_path\" in configuration file\n"
2886	locat=config_file; exit
2887	fi
2888	fi
2889	eval local_depository_path=$local_depository_path
2890	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2891	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2892
2893
2894	basename=`print $mainprog \| cut -f1 -d"."`
2895	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2896	if [[ ! -f $make_depository ]]
2897	then
2898	printf "\n"
2899	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2900	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2901	else
2902	cp $make_depository $TEMPDIR_COMPILE
2903	cd $TEMPDIR_COMPILE
2904	tar -xf $make_depository > /dev/null 2>&1
2905	cd - > /dev/null
2906	fi
2907
2908	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2909
2910	else
2911
2912	cp $executable ${TEMPDIR}/a.out
2913
2914	fi
2915
2916
2917	# WECHSEL IN TEMPORAEREN KATALOG
2918	cd $TEMPDIR
2919	printf "\n *** changed to temporary directory: $TEMPDIR"
2920
2921
2922	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2923	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2924	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2925	# ERMITTELN
2926	(( i = 0 ))
2927	while (( i < iout ))
2928	do
2929	(( i = i + 1 ))
2930	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2931	then
2932	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2933	else
2934	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2935	fi
2936	done
2937
2938
2939	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2940	if [[ $do_compile = true ]]
2941	then
2942
2943
2944	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2945	printf "\n\n\n *** compilation starts \n$striche\n"
2946	printf " *** compilation with make using following options:\n"
2947	printf " make depository: $make_depository"
2948	if [[ "$mopts" != "" ]]
2949	then
2950	printf " make options: $mopts\n"
2951	fi
2952	printf " compilername: $compiler_name\n"
2953	printf " compiler options: $fopts\n"
2954	printf " preprocessor directives: $cpp_options \n"
2955	printf " linker options: $lopts \n"
2956	if [[ "$modules" != "" ]]
2957	then
2958	printf " modules to be load: $modules \n"
2959	fi
2960	printf " source code files: $source_list \n"
2961
2962	if [[ $localhost = nech ]]
2963	then
2964	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2965	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2966	cp $TEMPDIR_COMPILE/a.out .
2967	[[ $? != 0 ]] && compile_error=true
2968	rm -rf $TEMPDIR_COMPILE
2969	elif [[ $localhost = ibmh ]]
2970	then
2971	printf " compiler is called via ssh on \"plogin1\" \n"
2972	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2973	[[ ! -f a.out ]] && compile_error=true
2974	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2975	elif [[ $localhost = lcsgib ]]
2976	then
2977	printf " compiler is called via ssh on \"bicegate0\" \n"
2978	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2979	[[ ! -f a.out ]] && compile_error=true
2980	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2981	elif [[ $localhost = lcsgih ]]
2982	then
2983	printf " compiler is called via ssh on \"hicegate0\" \n"
2984	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2985	[[ ! -f a.out ]] && compile_error=true
2986	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2987	elif [[ $localhost = lcflow ]]
2988	then
2989	printf " compiler is called via ssh on \"flow\" \n"
2990	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2991	[[ ! -f a.out ]] && compile_error=true
2992	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2993	else
2994	[[ "$init_cmds" != "" ]] && eval $init_cmds
2995	[[ "$module_calls" != "" ]] && eval $module_calls
2996	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2997
2998	fi
2999
3000	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
3001	then
3002	printf "\n +++ error occured while compiling or linking"
3003	locat=compile
3004
3005	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
3006	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
3007	# then
3008	exit
3009	# else
3010	# locat=normal
3011	# fi
3012	else
3013	printf "$striche\n *** compilation finished \n"
3014	fi
3015	fi
3016
3017
3018	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
3019	if [[ $local_compile = true ]]
3020	then
3021	cd $HOME
3022	rm -rf $TEMPDIR
3023	locat=local_compile; exit
3024	fi
3025
3026
3027	# BEREITSTELLEN DER INPUT-DATEIEN
3028	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
3029	(( i = 0 ))
3030	while (( i < iin ))
3031	do
3032	(( i = i + 1 ))
3033	if (( i == 1 ))
3034	then
3035	printf "\n\n *** providing INPUT-files:\n$striche"
3036	fi
3037
3038
3039	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3040	if [[ "${transin[$i]}" = unavailable ]]
3041	then
3042	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3043	then
3044	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3045	printf "\n is not available!"
3046	else
3047	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3048	printf "\n is not available!"
3049	fi
3050	continue
3051	fi
3052
3053	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3054	files_for_pes=false; datentyp=file
3055	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3056	then
3057	files_for_pes=true; datentyp=directory
3058	actionin[$i]=""
3059	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3060	then
3061	actionin[$i]=""
3062	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3063	then
3064	files_for_pes=true; datentyp=directory
3065	actionin[$i]="ar"
3066	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3067	then
3068	actionin[$i]="ar"
3069	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3070	then
3071	files_for_pes=true; datentyp=directory
3072	actionin[$i]="fl"
3073	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3074	then
3075	actionin[$i]="fl"
3076	fi
3077
3078	if [[ $files_for_pes = true ]]
3079	then
3080	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3081	else
3082	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3083	fi
3084
3085	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3086	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3087	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3088	# SERVER ZU HOLEN
3089	if [[ "${actionin[$i]}" = fl ]]
3090	then
3091	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3092	if [[ $files_for_pes = false ]]
3093	then
3094	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3095	then
3096	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3097	got_tmp[$i]=true
3098	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3099	then
3100	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3101	printf "\n *** trying to use backup copy in \"$WORK\" "
3102	cp $WORK/${frelin[$i]} ${localin[$i]}
3103	else
3104	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3105	printf "\n or \"$tmp_data_catalog\" does not exist!"
3106	printf "\n *** trying to get copy from archive"
3107	actionin[$i]=ar
3108	fi
3109	else
3110	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3111	then
3112	mkdir ${localin[$i]}
3113	cd $tmp_data_catalog/${frelin[$i]}
3114	for file in $(ls *)
3115	do
3116	ln $file $TEMPDIR/${localin[$i]}
3117	done
3118	cd $TEMPDIR
3119	got_tmp[$i]=true
3120	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3121	then
3122	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3123	printf "\n *** trying to use backup copy in \"$WORK\" "
3124	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3125	else
3126	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3127	printf "\n or \"$tmp_data_catalog\" does not exist!"
3128	printf "\n *** trying to get copy from archive"
3129	actionin[$i]=ar
3130	fi
3131	fi
3132	fi
3133
3134
3135	# DATEI LIEGT AUF ARCHIV-SERVER
3136	if [[ "${actionin[$i]}" = ar ]]
3137	then
3138
3139	if [[ $files_for_pes = false ]]
3140	then
3141	printf "\n file will be restored from archive-system ($archive_system)!"
3142	else
3143	printf "\n directory will be restored from archive-system ($archive_system)!"
3144	fi
3145
3146	file_restored=false
3147
3148	if [[ $archive_system = asterix ]]
3149	then
3150	do_stagein=true
3151	(( stagein_anz = 0 ))
3152	while [[ $do_stagein = true ]]
3153	do
3154	if [[ $files_for_pes = false ]]
3155	then
3156	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3157	else
3158	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3159	fi
3160	cat STAGEIN_OUTPUT
3161	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3162	then
3163	file_restored=true
3164	do_stagein=false
3165	else
3166	(( stagein_anz = stagein_anz + 1 ))
3167	if (( stagein_anz == 10 ))
3168	then
3169	printf "\n +++ stagein stoped after 10 tries"
3170	locat=stage
3171	exit
3172	fi
3173	printf "\n +++ restoring from archive failed, trying again:"
3174	sleep 900
3175	fi
3176	done
3177	elif [[ $archive_system = DMF ]]
3178	then
3179	if [[ $files_for_pes = false ]]
3180	then
3181	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3182	locat=DMF
3183	exit
3184	else
3185	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3186	cp -r $ARCHIVE/${frelin[$i]} $PWD
3187	file_restored=true
3188	fi
3189	elif [[ $archive_system = tivoli ]]
3190	then
3191	if [[ $files_for_pes = false ]]
3192	then
3193	if [[ $localhost = lcsgih ]]
3194	then
3195	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3196	else
3197	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3198	fi
3199	else
3200	(( inode = 0 ))
3201	while (( inode < nodes ))
3202	do
3203	if [[ $localhost = lcsgih ]]
3204	then
3205	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3206	else
3207	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3208	fi
3209	(( inode = inode + 1 ))
3210	done
3211	fi
3212	file_restored=true
3213	elif [[ $archive_system = ut ]]
3214	then
3215	if [[ $files_for_pes = false ]]
3216	then
3217	cp $UT/${frelin[$i]} .
3218	else
3219	(( inode = 0 ))
3220	while (( inode < nodes ))
3221	do
3222	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3223	(( inode = inode + 1 ))
3224	done
3225	fi
3226	file_restored=true
3227	else
3228	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3229	locat=rearchive
3230	exit
3231	fi
3232
3233	if [[ $file_restored = true ]]
3234	then
3235
3236	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3237	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3238	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3239	if [[ $files_for_pes = false ]]
3240	then
3241	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3242	else
3243	mkdir $tmp_data_catalog/${frelin[$i]}
3244	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3245	fi
3246	got_tmp[$i]=true
3247
3248	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3249	mv ${frelin[$i]} ${localin[$i]}
3250
3251	fi
3252	fi
3253
3254
3255	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3256	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3257	then
3258
3259	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3260	then
3261
3262	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3263	printf "\n file will be provided for $numprocs processors"
3264	mkdir ${localin[$i]}
3265	ival=$numprocs
3266	(( ii = 0 ))
3267	while (( ii <= ival-1 ))
3268	do
3269	if (( ii < 10 ))
3270	then
3271	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3272	elif (( ii < 100 ))
3273	then
3274	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3275	elif (( ii < 1000 ))
3276	then
3277	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3278	else
3279	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3280	fi
3281	(( ii = ii + 1 ))
3282	done
3283
3284	else
3285
3286	if [[ $files_for_pes = true ]]
3287	then
3288
3289	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3290	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3291	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3292	# PER MOVE UMBENANNT WERDEN
3293	printf "\n providing $numprocs files for the respective processors"
3294	mkdir ${localin[$i]}
3295	if [[ $link_local_input = true ]]
3296	then
3297	printf " using ln -f\n"
3298	cd ${absnamein[$i]}
3299	for file in $(ls *)
3300	do
3301	ln -f $file ${localin[$i]}
3302	done
3303	cd $TEMPDIR
3304	fi
3305	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3306	if [[ ! -f "${localin[$i]}/_0000" ]]
3307	then
3308	if [[ $link_local_input = true ]]
3309	then
3310	printf " ln failed for .../_0000, using cp...\n"
3311	fi
3312	cp -r ${absnamein[$i]}/* ${localin[$i]}
3313	fi
3314
3315	else
3316	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3317	if [[ $link_local_input = true ]]
3318	then
3319	printf " using ln -f\n"
3320	ln -f ${absnamein[$i]} ${localin[$i]}
3321	fi
3322	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3323	if [[ ! -f "${localin[$i]}" ]]
3324	then
3325	if [[ $link_local_input = true ]]
3326	then
3327	printf " ln failed, using cp...\n"
3328	fi
3329	cp ${absnamein[$i]} ${localin[$i]}
3330	fi
3331	fi
3332	fi
3333	fi
3334
3335	done
3336	if (( i != 0 ))
3337	then
3338	printf "\n$striche\n *** all INPUT-files provided \n"
3339	fi
3340
3341
3342	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3343	(( i = 0 ))
3344	while (( i < iic ))
3345	do
3346	(( i = i + 1 ))
3347	if (( i == 1 ))
3348	then
3349	printf "\n\n *** execution of INPUT-commands:\n$striche"
3350	fi
3351	printf "\n >>> ${in_command[$i]}"
3352	eval ${in_command[$i]}
3353	if (( i == iic ))
3354	then
3355	printf "\n$striche\n"
3356	fi
3357	done
3358
3359
3360	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3361	cpurest=${cpumax}.
3362
3363
3364	# START DVR STREAMING SERVER
3365	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3366	then
3367	if [[ "$dvr_server" != "" ]]
3368	then
3369
3370	printf "\n\n *** preparing the dvr streaming server configuration file"
3371
3372	# Check, if a dvr server is already running
3373	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3374	if [[ "$running_dvrserver_id" != "" ]]
3375	then
3376
3377	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3378	printf "\n This server is used instead starting a new one!"
3379	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3380
3381	else
3382
3383	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3384	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3385	then
3386	cp ${PALM_BIN}/.dvrserver.config .
3387
3388	# Entering the BASEDIR, UID and GID into this file
3389	user_id=`id -u`
3390	group_id=`id -g`
3391	# & is needed as seperator, because TEMPDIR contains /
3392	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3393	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3394	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3395	mv .dvrserver.3 .dvrserver.config
3396	rm .dvrserver.1 .dvrserver.2
3397
3398	# Start dvr server in background, get his id and print on terminal
3399	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3400	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3401	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3402	local_dvrserver_running=.TRUE.
3403	else
3404	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3405	printf "\n \"$PALM_BIN\" "
3406	locat=dvr
3407	exit
3408	fi
3409
3410	fi
3411
3412	else
3413	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3414	fi
3415	fi
3416
3417
3418	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3419	# LESEN VON PALM)
3420	cat > ENVPAR << %%END%%
3421	&envpar run_identifier = '$fname', host = '$localhost',
3422	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3423	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3424	maximum_cpu_time_allowed = ${cpumax}.,
3425	revision = '$global_revision',
3426	local_dvrserver_running = $local_dvrserver_running /
3427
3428	%%END%%
3429
3430
3431	# PROGRAMMSTART
3432	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3433	PATH=$PATH:$TEMPDIR
3434
3435	# MPI debug option (argument checking, slows down execution due to increased latency)
3436	if [[ "$mpi_debug" = true ]]
3437	then
3438	export MPI_CHECK_ARGS=1
3439	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3440	fi
3441
3442	if [[ "$totalview" = true ]]
3443	then
3444	printf "\n *** totalview debugger will be used"
3445	tv_opt="-tv"
3446	else
3447	tv_opt=""
3448	fi
3449
3450	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3451	then
3452	if [[ "$ENVIRONMENT" = BATCH ]]
3453	then
3454	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3455	then
3456	printf "\n +++ debug is allowed in interactive mode only"
3457	locat=debug
3458	exit
3459	fi
3460	fi
3461	if [[ $localhost = decalpha ]]
3462	then
3463	dxladebug a.out
3464	elif [[ $localhost = ibmh ]]
3465	then
3466
3467	# SETUP THE IBM MPI ENVIRONMENT
3468	export MP_SHARED_MEMORY=yes
3469	export AIXTHREADS_SCOPE=S
3470	export OMP_NUM_THREADS=$threads_per_task
3471	export AUTHSTATE=files
3472	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3473
3474	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3475	export MP_ADAPTER_USE=shared
3476	export MP_CPU_USE=multiple
3477	export MP_TIMEOUT=1200
3478
3479	unset MP_TASK_AFFINITY
3480
3481	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3482	#(( ii = 1 ))
3483	#while (( ii <= $numprocs ))
3484	#do
3485	# echo $localhost_realname >> hostfile
3486	# (( ii = ii + 1 ))
3487	#done
3488	#export MP_HOSTFILE=hostfile
3489
3490	if [[ "$LOADLBATCH" = yes ]]
3491	then
3492	totalview poe a.out $ROPTS
3493	else
3494	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3495	export TVDSVRLAUNCHCMD=ssh
3496	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3497	fi
3498	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3499	then
3500	# CURRENTLY NO DEBUGGER ON LCSGI
3501	if [[ $run_coupled_model = true ]]
3502	then
3503	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3504	locat=debug
3505	exit
3506	else
3507	echo "no_coupling" > runfile_atmos
3508	fi
3509	(( ii = $numprocs / $threads_per_task ))
3510	export OMP_NUM_THREADS=$threads_per_task
3511	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3512	if [[ $threads_per_task != 1 ]]
3513	then
3514	printf "\n threads per task: $threads_per_task"
3515	fi
3516	printf "\n\n"
3517	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3518	then
3519	# export MPI_LAUNCH_TIMEOUT=360
3520	if [[ "$totalview" = true ]]
3521	then
3522	printf "\n running totalview debugger"
3523	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3524	else
3525	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3526	fi
3527	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3528	then
3529	# ulimit -s 300000 # A too large stack size causes problems
3530	# export MV2_NUM_PORTS=2
3531	# export MV2_CPU_MAPPING=0:1:2:3
3532	if [[ "$totalview" = true ]]
3533	then
3534	printf "\n running totalview debugger"
3535	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3536	else
3537	mpiexec ./a.out $ROPTS < runfile_atmos
3538	fi
3539	fi
3540	else
3541	printf "\n +++ no debug available on \"$localhost\" "
3542	printf "\n or not implemented in mrun so far"
3543	locat=debug
3544	exit
3545	fi
3546
3547	# end debug mode
3548	else
3549
3550	# normal execution
3551	if [[ -n $numprocs ]]
3552	then
3553	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3554	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3555	then
3556	# SETUP THE IBM MPI ENVIRONMENT
3557	if [[ $host != ibmh && $host != ibmkisti ]]
3558	then
3559	export MP_SHARED_MEMORY=yes
3560	export AIXTHREAD_SCOPE=S
3561	export OMP_NUM_THREADS=$threads_per_task
3562	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3563	export AUTHSTATE=files
3564	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3565	# export MP_PRINTENV=yes
3566
3567	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3568	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3569	export MP_WAIT_MODE=poll
3570	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3571	fi
3572
3573	if [[ $host = ibmkisti ]]
3574	then
3575	export LANG=en_US
3576	export MP_SHARED_MEMORY=yes
3577	if [[ $threads_per_task = 1 ]]
3578	then
3579	export MP_SINGLE_THREAD=yes
3580	export MEMORY_AFFINITY=MCM
3581	else
3582	export OMP_NUM_THREADS=$threads_per_task
3583	fi
3584	fi
3585
3586	if [[ "$LOADLBATCH" = yes ]]
3587	then
3588	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3589	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3590	then
3591	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3592	else
3593	if [[ $run_coupled_model = false ]]
3594	then
3595	if [[ "$ocean_file_appendix" = true ]]
3596	then
3597	echo "precursor_ocean" > runfile_atmos
3598	else
3599	echo "precursor_atmos" > runfile_atmos
3600	fi
3601	else
3602	(( iia = $numprocs_atmos / $threads_per_task ))
3603	(( iio = $numprocs_ocean / $threads_per_task ))
3604	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3605	printf "\n using $coupled_mode coupling"
3606	printf "\n\n"
3607	echo "coupled_run $iia $iio" > runfile_atmos
3608	fi
3609	poe ./a.out $ROPTS < runfile_atmos
3610	fi
3611	else
3612	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3613	then
3614	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3615	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3616	then
3617	if [[ -f $hostfile ]]
3618	then
3619	cp $hostfile hostfile
3620	else
3621	(( ii = 1 ))
3622	while (( ii <= $numprocs ))
3623	do
3624	echo $localhost_realname >> hostfile
3625	(( ii = ii + 1 ))
3626	done
3627	fi
3628	export MP_HOSTFILE=hostfile
3629	if [[ $run_coupled_model = false ]]
3630	then
3631	if [[ "$ocean_file_appendix" = true ]]
3632	then
3633	echo "precursor_ocean" > runfile_atmos
3634	else
3635	echo "precursor_atmos" > runfile_atmos
3636	fi
3637	else
3638	(( iia = $numprocs_atmos / $threads_per_task ))
3639	(( iio = $numprocs_ocean / $threads_per_task ))
3640	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3641	printf "\n using $coupled_mode coupling"
3642	printf "\n\n"
3643	echo "coupled_run $iia $iio" > runfile_atmos
3644	fi
3645	if [[ $localhost = ibmy ]]
3646	then
3647	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3648	else
3649	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3650	fi
3651
3652	else
3653	if [[ "$host_file" = "" ]]
3654	then
3655	printf "\n +++ no hostfile given in configuration file"
3656	locat=config_file
3657	exit
3658	else
3659	eval host_file=$host_file
3660	fi
3661	export MP_HOSTFILE=$host_file
3662	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3663	fi
3664	fi
3665	elif [[ $host = nech \|\| $host = necriam ]]
3666	then
3667	(( ii = nodes ))
3668	if [[ $ii = 1 ]]
3669	then
3670	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3671	export MPIPROGINF=YES
3672	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3673	echo "*** execution on single node with mpirun"
3674	mpirun -np $numprocs ./a.out $ROPTS
3675	else
3676	(( i = 0 ))
3677	while (( i < ii ))
3678	do
3679	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3680	(( i = i + 1 ))
3681	done
3682
3683	echo "#!/bin/sh" > mpi_exec_shell
3684	echo " " >> mpi_exec_shell
3685	echo "set -u" >> mpi_exec_shell
3686	echo "F_ERRCNT=0" >> mpi_exec_shell
3687	echo "MPIPROGINV=YES" >> mpi_exec_shell
3688	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3689	echo "cpurest=$cpurest" >> mpi_exec_shell
3690	echo "fname=$fname" >> mpi_exec_shell
3691	echo "localhost=$localhost" >> mpi_exec_shell
3692	echo "return_addres=$return_addres" >> mpi_exec_shell
3693	echo "return_username=$return_username" >> mpi_exec_shell
3694	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3695	echo "write_binary=$write_binary" >> mpi_exec_shell
3696	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3697	echo " " >> mpi_exec_shell
3698	echo "export F_ERRCNT" >> mpi_exec_shell
3699	echo "export MPIPROGINV" >> mpi_exec_shell
3700	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3701	echo "export cpurest" >> mpi_exec_shell
3702	echo "export fname" >> mpi_exec_shell
3703	echo "export localhost" >> mpi_exec_shell
3704	echo "export return_addres" >> mpi_exec_shell
3705	echo "export return_username" >> mpi_exec_shell
3706	echo "export tasks_per_node" >> mpi_exec_shell
3707	echo "export write_binary" >> mpi_exec_shell
3708	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3709	echo " " >> mpi_exec_shell
3710	echo "exec ./a.out" >> mpi_exec_shell
3711
3712	chmod u+x mpi_exec_shell
3713	export MPIPROGINF=YES
3714	mpirun -f multinode_config &
3715	wait
3716
3717	fi
3718	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3719	then
3720
3721	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3722	# DOES NOT EXIST
3723	if [[ $host != lcsgih && $host != lcsgib ]]
3724	then
3725	if [[ -f $hostfile ]]
3726	then
3727	cp $hostfile hostfile
3728	(( ii = $numprocs / $threads_per_task ))
3729	else
3730	(( ii = 1 ))
3731	while (( ii <= $numprocs / $threads_per_task ))
3732	do
3733	echo $localhost_realname >> hostfile
3734	(( ii = ii + 1 ))
3735	done
3736	fi
3737	eval zeile=\"`head -n $ii hostfile`\"
3738	printf "\n *** running on: $zeile"
3739	fi
3740
3741	(( ii = $numprocs / $threads_per_task ))
3742	export OMP_NUM_THREADS=$threads_per_task
3743	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3744	if [[ $threads_per_task != 1 ]]
3745	then
3746	# increase stack size to unlimited, because large runs
3747	# may abort otherwise
3748	ulimit -Ss unlimited
3749	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3750	fi
3751	if [[ $run_coupled_model = false ]]
3752	then
3753	if [[ "$ocean_file_appendix" = true ]]
3754	then
3755	echo "precursor_ocean" > runfile_atmos
3756	else
3757	echo "precursor_atmos" > runfile_atmos
3758	fi
3759	printf "\n\n"
3760	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3761	then
3762	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3763	then
3764	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3765	# export MPI_DSM_DISTRIBUTE=1
3766	# MPI_DSM_CPULIST: pin MPI processes to cores
3767	if [[ $use_openmp = false ]]
3768	then
3769	if [[ "$sgi_feature" = ice2 ]]
3770	then
3771	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3772	else
3773	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3774	fi
3775	else
3776	unset MPI_DSM_CPULIST
3777	fi
3778	# MPI_IB_RAILS: use both IB rails on ICE2
3779	export MPI_BUFS_PER_HOST=512
3780	export MPI_IB_RAILS=2
3781	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3782	export MPI_CONNECTIONS_THRESHOLD=8192
3783	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3784	export MPI_TYPE_DEPTH=20
3785	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3786	export MPI_GROUP_MAX=64
3787	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3788	if [[ $use_openmp = true ]]
3789	then
3790	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3791	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3792	else
3793	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3794	fi
3795
3796	# next is test for openmp usage
3797	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3798	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3799	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3800	then
3801	export MV2_NUM_PORTS=2
3802	# The default setting of MV2_CPU_MAPPING gives best results
3803	# export MV2_ENABLE_AFFINITY=1
3804	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3805	# if [[ "$sgi_feature" = ice2 ]]
3806	# then
3807	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3808	# else
3809	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3810	# fi
3811	if [[ $use_openmp = true ]]
3812	then
3813	unset MV2_CPU_MAPPING
3814	export MV2_ENABLE_AFFINITY=0
3815	fi
3816	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3817	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3818	if [[ $use_openmp = true ]]
3819	then
3820	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3821	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3822	else
3823	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3824	fi
3825	elif [[ "$mpilib" = impi ]]
3826	then
3827	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3828	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3829	fi
3830	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3831	then
3832	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3833	elif [[ $host = lcflow ]]
3834	then
3835	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3836	elif [[ $host = lcsb ]]
3837	then
3838	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3839	elif [[ $host = lckiaps ]]
3840	then
3841	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3842	else
3843	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3844	fi
3845	else
3846
3847	# currently there is no full MPI-2 support on ICE and XT4
3848	(( iia = $numprocs_atmos / $threads_per_task ))
3849	(( iio = $numprocs_ocean / $threads_per_task ))
3850	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3851	printf "\n using $coupled_mode coupling"
3852	printf "\n\n"
3853
3854	if [[ $coupled_mode = "mpi2" ]]
3855	then
3856	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3857	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3858	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3859	then
3860
3861	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3862	then
3863	# export MPI_LAUNCH_TIMEOUT=360
3864	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3865	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3866	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3867	then
3868	# ulimit -s 300000 # A too large stack size causes problems
3869	# export MV2_NUM_PORTS=2
3870	# export MV2_CPU_MAPPING=0:1:2:3
3871	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3872	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3873	fi
3874
3875	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3876	then
3877
3878	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3879	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3880
3881	else
3882	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3883	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3884	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3885	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3886	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3887	fi
3888	wait
3889
3890	else
3891
3892	echo "coupled_run $iia $iio" > runfile_atmos
3893	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3894	then
3895
3896	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3897	then
3898	# export MPI_LAUNCH_TIMEOUT=360
3899	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3900	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3901	then
3902	# ulimit -s 300000 # A too large stack size causes problems
3903	# export MV2_NUM_PORTS=2
3904	# export MV2_CPU_MAPPING=0:1:2:3
3905	mpiexec ./a.out $ROPTS < runfile_atmos
3906	fi
3907
3908	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3909	then
3910
3911	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3912
3913	elif [[ $host = lck \|\| $host = lckordi ]]
3914	then
3915	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3916	fi
3917	wait
3918	fi
3919
3920	fi
3921	elif [[ $host = decalpha ]]
3922	then
3923	dmpirun -np $numprocs a.out $ROPTS
3924	elif [[ $host = lckyoto ]]
3925	then
3926	set -xv
3927	export P4_RSHCOMMAND=plesh
3928	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3929	if [[ "$ENVIRONMENT" = BATCH ]]
3930	then
3931	if [[ "$cond2" = fujitsu ]]
3932	then
3933	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3934	elif [[ "cond2" = pgi ]]
3935	then
3936	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3937	else
3938	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3939	fi
3940	else
3941	if [[ "$cond2" = "" ]]
3942	then
3943	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3944	else
3945	mpirun -np $numprocs ./a.out $ROPTS
3946	fi
3947	fi
3948	set +xv
3949	elif [[ $host = lctit ]]
3950	then
3951	export OMP_NUM_THREADS=$threads_per_task
3952	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3953	if [[ "$threads_per_task" != 1 ]]
3954	then
3955	export MV2_ENABLE_AFFINITY=0
3956	fi
3957	echo "----- PBS_NODEFILE content:"
3958	cat $PBS_NODEFILE
3959	echo "-----"
3960	(( ii = $numprocs / $threads_per_task ))
3961	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3962	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3963	else
3964	mpprun -n $numprocs a.out $ROPTS
3965	fi
3966	[[ $? != 0 ]] && execution_error=true
3967
3968
3969	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3970	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3971	then
3972	apprentice
3973	fi
3974	else
3975	a.out $ROPTS
3976	fi
3977	fi
3978	if [[ $? != 0 \|\| $execution_error = true ]]
3979	then
3980
3981	# ABBRUCH BEI LAUFZEITFEHLER
3982	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3983	printf "\n +++ runtime error occured"
3984	locat=execution
3985	exit
3986	else
3987	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3988	printf "\n$striche\n *** execution finished \n"
3989
3990	# Stop the dvr streaming server and process the dvr output in order
3991	# to create dvrs- and html-files containing all streams
3992	if [[ "$dvrserver_id" != "" ]]
3993	then
3994	kill $dvrserver_id
3995	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3996
3997	# If there is a directory, data have been output by the
3998	# streaming server. Otherwise, user has chosen dvrp_output=local
3999	if [[ -d DATA_DVR ]]
4000	then
4001
4002	# Add the current dvr configuration file to the dvr output
4003	# directory
4004	cp .dvrserver.config DATA_DVR
4005
4006	# Process the dvr output (option -s for also generating
4007	# sequence mode data)
4008	process_dvr_output -d DATA_DVR -f $fname -s
4009
4010	else
4011
4012	# Process the local output
4013	process_dvr_output -l -d DATA_DVR -f $fname
4014
4015	fi
4016
4017	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
4018	then
4019
4020	# Process dvr output generated in local mode (dvrp_output=local)
4021	process_dvr_output -l -d DATA_DVR -f $fname
4022
4023	fi
4024	fi
4025
4026
4027
4028	# Call of combine_plot_fields in order to merge single files written
4029	# by each PE into one file.
4030	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4031	then
4032	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4033	printf "\n 2d- and/or 3d-data may be incomplete!"
4034	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4035	elif [[ "$combine_plot_fields" == true ]]
4036	then
4037	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4038	combine_plot_fields${block}.x
4039	else
4040	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4041	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4042	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4043	fi
4044
4045
4046
4047	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4048	(( i = 0 ))
4049	while (( i < ioc ))
4050	do
4051	(( i = i + 1 ))
4052	if (( i == 1 ))
4053	then
4054	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4055	fi
4056	printf "\n >>> ${out_command[$i]}"
4057	eval ${out_command[$i]}
4058	if (( i == ioc ))
4059	then
4060	printf "\n$striche\n"
4061	fi
4062	done
4063
4064
4065	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4066	if [[ $do_trace = true ]]
4067	then
4068	printf "\n\n"
4069	ls -al
4070	fi
4071
4072
4073
4074	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4075	(( i = 0 ))
4076	while (( i < iout ))
4077	do
4078	(( i = i + 1 ))
4079	if (( i == 1 ))
4080	then
4081	printf "\n\n *** saving OUTPUT-files:\n$striche"
4082	fi
4083
4084	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4085	files_for_pes=false; filetyp=file
4086	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4087	then
4088	files_for_pes=true; filetyp=directory
4089	actionout[$i]=""
4090	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4091	then
4092	actionout[$i]=""
4093	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4094	then
4095	files_for_pes=true; filetyp=directory
4096	actionout[$i]="ar"
4097	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4098	then
4099	actionout[$i]="ar"
4100	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4101	then
4102	files_for_pes=true; filetyp=directory
4103	actionout[$i]="fl"
4104	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4105	then
4106	actionout[$i]="fl"
4107	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4108	then
4109	files_for_pes=true; filetyp=directory
4110	actionout[$i]="tr"
4111	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4112	then
4113	actionout[$i]="tr"
4114	fi
4115
4116	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4117	then
4118	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4119	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4120	then
4121	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4122	else
4123
4124
4125	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4126	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4127	# REMOTE-RECHNUNGEN
4128	if [[ "${actionout[$i]}" = tr ]]
4129	then
4130	if [[ $localhost != $fromhost ]]
4131	then
4132	if [[ $files_for_pes = false ]]
4133	then
4134	cps=""
4135	cst=""
4136	else
4137	cps=-c
4138	cst="/"
4139	fi
4140	if [[ $localhost = nech ]]
4141	then
4142
4143	# TRANSFER IN EIGENSTAENDIGEM JOB
4144	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4145	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4146	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4147	if [[ $files_for_pes = false ]]
4148	then
4149	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4150	else
4151	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4152	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4153	fi
4154
4155	echo "set -x" > transfer_${localout[$i]}
4156	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4157
4158	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4159	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4160	printf "\n or higher cycle\n"
4161	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4162
4163	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4164
4165	if [[ $localhost = nech ]]
4166	then
4167	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4168	else
4169	if [[ "$LOGNAME" = b323013 ]]
4170	then
4171	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4172	else
4173	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4174	fi
4175	fi
4176
4177	else
4178
4179	# TRANSFER INNERHALB DIESES JOBS
4180	transfer_failed=false
4181	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4182	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4183	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4184	[[ $? != 0 ]] && transfer_failed=true
4185
4186	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4187	# LOKALER MASCHINE ANLEGEN
4188	if [[ $transfer_failed = true ]]
4189	then
4190	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4191	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4192
4193	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4194	# ANLEGEN.
4195	eval local_catalog=${pathout[$i]}
4196	if [[ ! -d $local_catalog ]]
4197	then
4198	printf " *** local directory does not exist. Trying to create:\n"
4199	printf " $local_catalog \n"
4200	mkdir -p $local_catalog
4201	fi
4202	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4203	transfer_problems=true
4204	fi
4205	fi
4206	else
4207
4208	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4209	actionout[$i]=""
4210	fi
4211	fi
4212
4213
4214	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4215	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4216	# REMOTE-RECHNUNGEN
4217	if [[ "${actionout[$i]}" = tra ]]
4218	then
4219	if [[ $localhost != $fromhost ]]
4220	then
4221	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4222	then
4223
4224	# TRANSFER IN EIGENSTAENDIGEM JOB
4225	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4226	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4227	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4228	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4229
4230	echo "set -x" > transfer_${localout[$i]}
4231	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4232
4233	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4234	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4235	printf "\n or higher cycle\n"
4236	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4237
4238	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4239
4240	if [[ $localhost = nech ]]
4241	then
4242	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4243	else
4244	if [[ $LOGNAME = b323013 ]]
4245	then
4246	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4247	else
4248	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4249	fi
4250	fi
4251
4252	else
4253
4254	# TRANSFER INNERHALB DIESES JOBS
4255	transfer_failed=false
4256	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4257	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4258	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4259	[[ $? != 0 ]] && transfer_failed=true
4260
4261	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4262	# LOKALER MASCHINE ANLEGEN
4263	if [[ $transfer_failed = true ]]
4264	then
4265	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4266	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4267
4268	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4269	# ANLEGEN
4270	eval local_catalog=${pathout[$i]}
4271	if [[ ! -d $local_catalog ]]
4272	then
4273	printf " *** local directory does not exist. Trying to create:\n"
4274	printf " $local_catalog \n"
4275	mkdir -p $local_catalog
4276	fi
4277
4278	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4279	transfer_problems=true
4280	fi
4281	fi
4282	else
4283
4284	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4285	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4286	actionout[$i]=a
4287	fi
4288	fi
4289
4290
4291	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4292	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4293	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4294	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4295	if [[ "${actionout[$i]}" = fl ]]
4296	then
4297	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4298	chmod g+rx $tmp_data_catalog
4299	if [[ $files_for_pes = false ]]
4300	then
4301	printf "\n >>> OUTPUT: ${localout[$i]} to"
4302	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4303	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4304	else
4305	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4306	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4307	mkdir $tmp_data_catalog/${frelout[$i]}
4308	cd ${localout[$i]}
4309	for file in $(ls *)
4310	do
4311	ln -f $file $tmp_data_catalog/${frelout[$i]}
4312	done
4313	cd $TEMPDIR
4314	fi
4315
4316
4317	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4318	if [[ $store_on_archive_system = true ]]
4319	then
4320
4321	if [[ $archive_system = asterix ]]
4322	then
4323	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4324	if [[ $files_for_pes = false ]]
4325	then
4326	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4327	else
4328	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4329	fi
4330	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4331	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4332	echo "then" >> archive_${frelout[$i]}
4333	echo " do_stageout=false" >> archive_${frelout[$i]}
4334	echo "else" >> archive_${frelout[$i]}
4335	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4336	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4337	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4338	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4339	if [[ $files_for_pes = false ]]
4340	then
4341	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4342	else
4343	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4344	fi
4345	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4346	echo "fi" >> archive_${frelout[$i]}
4347	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4348	elif [[ $archive_system = DMF ]]
4349	then
4350	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4351	if [[ $files_for_pes = false ]]
4352	then
4353	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4354	locat=DMF
4355	exit
4356	else
4357	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4358	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4359	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4360	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4361	fi
4362	elif [[ $archive_system = tivoli ]]
4363	then
4364	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4365	if [[ $files_for_pes = false ]]
4366	then
4367	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4368	echo "set -x" >> archive_${frelout[$i]}
4369	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4370	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4371	else
4372
4373	echo "set -x" >> archive_${frelout[$i]}
4374	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4375	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4376	cd $tmp_data_catalog
4377	all_files=`ls -1 ${frelout[$i]}/*`
4378	cd - > /dev/null
4379	(( inode = 0 ))
4380	(( tp1 = tasks_per_node + 1 ))
4381	while (( inode < nodes ))
4382	do
4383	# echo "*** all_files = \"$all_files\" "
4384	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4385	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4386	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4387	# echo "*** files = \"$files\" "
4388	# echo "*** all_files = \"$all_files\" "
4389	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4390	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4391	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4392	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4393	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4394	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4395	(( inode = inode + 1 ))
4396	done
4397	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4398	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4399	fi
4400	elif [[ $archive_system = ut ]]
4401	then
4402	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4403	if [[ $files_for_pes = false ]]
4404	then
4405	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4406	echo "set -x" >> archive_${frelout[$i]}
4407	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4408	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4409	else
4410
4411	echo "set -x" >> archive_${frelout[$i]}
4412	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4413	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4414	cd $tmp_data_catalog
4415	all_files=`ls -1 ${frelout[$i]}/*`
4416	cd - > /dev/null
4417	(( inode = 0 ))
4418	(( tp1 = tasks_per_node + 1 ))
4419	while (( inode < nodes ))
4420	do
4421	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4422	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4423	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4424	(( inode = inode + 1 ))
4425	done
4426	fi
4427	elif [[ $archive_system = none ]]
4428	then
4429	printf " +++ archiving on $localhost not available!\n"
4430	fi
4431
4432	if [[ $archive_system != none ]]
4433	then
4434	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4435	then
4436	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4437	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4438	elif [[ $localhost = nech ]]
4439	then
4440	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4441	fi
4442	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4443	fi
4444	else
4445	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4446	fi
4447
4448
4449	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4450	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4451	if [[ $files_for_pes = false ]]
4452	then
4453	cat /dev/null > ${pathout[$i]}
4454	else
4455	mkdir -p ${pathout[$i]}
4456	fi
4457
4458	fi
4459
4460
4461	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4462	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4463	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4464	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4465	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4466	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4467	if [[ "${actionout[$i]}" = ar ]]
4468	then
4469	if [[ $files_for_pes = false ]]
4470	then
4471	printf "\n >>> OUTPUT: ${localout[$i]} to"
4472	printf "\n ${pathout[$i]}"
4473	printf "\n File will be copied to archive-system ($archive_system) !\n"
4474	else
4475	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4476	printf "\n ${pathout[$i]}"
4477	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4478	fi
4479	mv ${localout[$i]} ${frelout[$i]}
4480
4481	file_saved=false
4482
4483	if [[ $archive_system = asterix ]]
4484	then
4485	do_stageout=true
4486	(( stageout_anz = 0 ))
4487	while [[ $do_stageout = true ]]
4488	do
4489	if [[ $files_for_pes = false ]]
4490	then
4491	stageout ${frelout[$i]} > STAGE_OUTPUT
4492	else
4493	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4494	fi
4495	cat STAGE_OUTPUT
4496	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4497	then
4498	file_saved=true
4499	do_stageout=false
4500	else
4501	if [[ $files_for_pes = false ]]
4502	then
4503	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4504	else
4505	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4506	fi
4507	(( stageout_anz = stageout_anz + 1 ))
4508	if (( stageout_anz == 10 ))
4509	then
4510	printf "\n +++ stoped after 10 unsuccessful tries!"
4511	archive_save=false
4512	do_stageout=false
4513	else
4514	printf "\n *** new try to store on archive after 15 min:"
4515	sleep 900
4516	fi
4517	fi
4518	done
4519	elif [[ $archive_system = DMF ]]
4520	then
4521	if [[ $files_for_pes = false ]]
4522	then
4523	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4524	locat=DMF
4525	exit
4526	else
4527	rm -rf $ARCHIVE/${frelout[$i]}
4528	cp -r ${frelout[$i]} $ARCHIVE
4529	fi
4530	file_saved=true
4531	elif [[ $archive_system = tivoli ]]
4532	then
4533	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4534	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4535	# GELEGT WERDEN
4536	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4537	chmod g+rx $tmp_data_catalog
4538	if [[ $files_for_pes = false ]]
4539	then
4540	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4541	else
4542	mkdir $tmp_data_catalog/${frelout[$i]}
4543	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4544	fi
4545
4546	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4547	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4548	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4549	if [[ $files_for_pes = false ]]
4550	then
4551	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4552	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4553	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4554	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4555	else
4556	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4557	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4558	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4559	fi
4560
4561	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4562	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4563	file_saved=true
4564
4565	elif [[ $archive_system = ut ]]
4566	then
4567	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4568	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4569	# GELEGT WERDEN
4570	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4571	chmod g+rx $tmp_data_catalog
4572	if [[ $files_for_pes = false ]]
4573	then
4574	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4575	else
4576	mkdir $tmp_data_catalog/${frelout[$i]}
4577	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4578	fi
4579
4580	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4581	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4582	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4583	if [[ $files_for_pes = false ]]
4584	then
4585	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4586	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4587	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4588	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4589	else
4590	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4591	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4592	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4593	fi
4594
4595	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4596	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4597	file_saved=true
4598
4599	else
4600	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4601	archive_save=false
4602	fi
4603	if [[ $file_saved = true ]]
4604	then
4605	if [[ $files_for_pes = false ]]
4606	then
4607	cat /dev/null > ${pathout[$i]}
4608	else
4609	mkdir -p ${pathout[$i]}
4610	fi
4611	fi
4612	fi
4613
4614	# APPEND AUF LOKALER MASCHINE
4615	if [[ "${actionout[$i]}" = "a" ]]
4616	then
4617	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4618	then
4619	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4620	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4621	else
4622	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4623	cat ${localout[$i]} >> ${pathout[$i]}
4624	fi
4625	fi
4626
4627	# KOPIEREN AUF LOKALER MASCHINE
4628	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4629	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4630	then
4631
4632	# KOPIEREN AUF EINPROZESSORMASCHINE
4633	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4634	then
4635	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4636	if [[ $link_local_output = true ]]
4637	then
4638	printf " using ln -f\n"
4639	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4640	fi
4641	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4642	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4643	then
4644	if [[ $link_local_output = true ]]
4645	then
4646	printf " ln failed, using cp...\n"
4647	fi
4648	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4649	fi
4650	else
4651	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4652	if [[ $link_local_output = true ]]
4653	then
4654	printf " using ln -f\n"
4655	ln -f ${localout[$i]} ${pathout[$i]}
4656	fi
4657	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4658	if [[ ! -f "${pathout[$i]}" ]]
4659	then
4660	if [[ $link_local_output = true ]]
4661	then
4662	printf " ln failed, using cp...\n"
4663	fi
4664	cp ${localout[$i]} ${pathout[$i]}
4665	fi
4666	fi
4667
4668	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4669	then
4670
4671	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4672	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4673	# WIRD DANN KOPIERT
4674	# PER MOVE UMBENANNT WERDEN
4675	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4676	if [[ $link_local_output = true ]]
4677	then
4678	printf " using ln -f\n"
4679	mkdir ${pathout[$i]}
4680	cd ${localout[$i]}
4681	for file in $(ls *)
4682	do
4683	ln -f $file ${pathout[$i]}
4684	done
4685	cd $TEMPDIR
4686	fi
4687	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4688	if [[ ! -f "${pathout[$i]}/_0000" ]]
4689	then
4690	if [[ $link_local_output = true ]]
4691	then
4692	printf " ln failed for .../_0000, using cp...\n"
4693	fi
4694	cp -r ${localout[$i]} ${pathout[$i]}
4695	fi
4696
4697	fi
4698	fi
4699	done
4700	if (( i != 0 ))
4701	then
4702	if [[ $transfer_problems = true ]]
4703	then
4704	printf "\n$striche\n *** OUTPUT-files saved"
4705	printf "\n +++ WARNING: some data transfers failed! \n"
4706	else
4707	printf "\n$striche\n *** all OUTPUT-files saved \n"
4708	fi
4709	fi
4710
4711
4712	# EVENTUELL FOLGEJOB STARTEN
4713	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4714	if [[ -f CONTINUE_RUN ]]
4715	then
4716
4717	if [[ $archive_save = true ]]
4718	then
4719
4720	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4721	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4722	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4723	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4724	# HANDEN
4725	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4726	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4727	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4728	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4729	then
4730	mc=`echo $mc \| sed 's/#/f/g'`
4731	fi
4732
4733
4734	# JOB STARTEN
4735	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4736	echo " $mc"
4737	printf "\n$striche\n"
4738	if [[ $localhost != $fromhost ]]
4739	then
4740
4741	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4742	then
4743	echo "*** ssh will be used to initiate restart-runs!"
4744	echo " return_addres=\"$return_addres\" "
4745	echo " return_username=\"$return_username\" "
4746	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4747	then
4748	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4749	else
4750	if [[ $localhost = ibmkisti ]]
4751	then
4752	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4753	else
4754	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4755	fi
4756	fi
4757	else
4758	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4759	locat=restart; exit
4760	fi
4761
4762	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4763	# DER AKTUELLE JOB ENDET
4764	if [[ $queue = special1q ]]
4765	then
4766	sleep 120
4767	else
4768	sleep 30
4769	fi
4770
4771	else
4772
4773	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4774	# RUFEN WERDEN, AUSSER AUF lcfimm
4775	cd $LOCAL_PWD
4776	if [[ $localhost = lcfimm ]]
4777	then
4778	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4779	else
4780	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4781	fi
4782	cd - > /dev/null
4783	fi
4784	printf "\n$striche\n *** restart-run initiated \n"
4785
4786
4787	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4788	# GEHOLT WORDEN SIND, LOESCHEN
4789	(( i = 0 ))
4790	while (( i < iin ))
4791	do
4792	(( i = i + 1 ))
4793	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4794	then
4795	rm -r $tmp_data_catalog/${frelin[$i]}
4796	fi
4797	done
4798
4799	else
4800
4801	printf "\n +++ no restart-run possible, since errors occured"
4802	printf "\n during the archive process"
4803	fi
4804
4805	fi
4806
4807
4808
4809	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4810	if [[ "$email_notification" != "none" ]]
4811	then
4812
4813	if [[ $localhost != $fromhost ]]
4814	then
4815	if [[ -f CONTINUE_RUN ]]
4816	then
4817	echo "PALM restart run necessary" > email_text
4818	echo "description header of actual run:" >> email_text
4819	cat CONTINUE_RUN >> email_text
4820	echo "mrun-command to restart:" >> email_text
4821	echo "$mc" >> email_text
4822	else
4823	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4824	fi
4825	mail $email_notification < email_text
4826	printf "\n *** email notification sent to \"$email_notification\" "
4827	fi
4828	fi
4829
4830
4831
4832	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4833	cd $HOME
4834	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4835
4836	else
4837
4838
4839	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4840	# CHENDE AKTIONEN DURCHGEFUEHRT
4841
4842	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4843	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4844	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4845	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4846	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4847	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4848	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4849	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4850	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4851	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4852	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4853	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4854	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4855	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4856	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4857	if [[ $use_openmp = true ]]
4858	then
4859	mrun_com=${mrun_com}" -O $threads_per_task"
4860	fi
4861	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4862	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4863	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4864	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4865	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4866	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4867	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4868	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4869	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4870	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4871	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4872	if [[ $do_remote = true ]]
4873	then
4874	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4875	fi
4876
4877
4878	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4879	jobfile=jobfile.$RANDOM
4880
4881
4882	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4883	echo "mkdir $TEMPDIR" >> $jobfile
4884	echo "cd $TEMPDIR" >> $jobfile
4885
4886
4887	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4888	if [[ $do_trace = true ]]
4889	then
4890	echo "set -x" >> $jobfile
4891	else
4892	echo "set +vx" >> $jobfile
4893	fi
4894
4895
4896	# initialize the environment and load modules
4897	if [[ "$init_cmds" != "" ]]
4898	then
4899	echo "$init_cmds" >> $jobfile
4900	fi
4901	if [[ "$module_calls" != "" ]]
4902	then
4903	echo "$module_calls" >> $jobfile
4904	fi
4905
4906
4907	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4908	# DATEI FUER DEN JOB
4909	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4910	then
4911
4912	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4913	# KOPIEREN
4914	if [[ $restart_run != true ]]
4915	then
4916	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4917	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4918	fi
4919
4920	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4921	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4922	echo "set -x" >> $jobfile
4923	if [[ $host = $localhost ]]
4924	then
4925	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4926	else
4927	if [[ $host != ibmkisti ]]
4928	then
4929	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4930	else
4931	# on KISTI's IBM firewall is only opened on interactive node
4932	echo "localdir=\`pwd\`" >> $jobfile
4933	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4934	fi
4935	fi
4936	echo "export SOURCES_COMPLETE=true" >> $jobfile
4937
4938	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4939	# ARBEITSVERZEICHNIS VERSCHIEBEN
4940	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4941	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4942	echo "execute_mrun=true" >> $jobfile
4943	echo " " >> $jobfile
4944
4945	else
4946
4947	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4948	# SOWIE GEGEBENENFALLS DES MAKEFILES
4949	if [[ $do_compile = true ]]
4950	then
4951
4952	source_catalog=SOURCES_FOR_RUN_$fname
4953
4954	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4955	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4956	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4957	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4958	echo "export SOURCES_COMPLETE=true" >> $jobfile
4959	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4960
4961	for filename in $source_list
4962	do
4963	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4964	echo "cat > $filename << \"%END%\"" >> $jobfile
4965	cat $source_catalog/$filename >> $jobfile
4966	echo " " >> $jobfile
4967	echo "%END%" >> $jobfile
4968	echo " " >> $jobfile
4969	done
4970
4971	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4972	echo "cat > Makefile << \"%END%\"" >> $jobfile
4973	cat $source_catalog/Makefile >> $jobfile
4974	echo " " >> $jobfile
4975	echo "%END%" >> $jobfile
4976	echo " " >> $jobfile
4977
4978	echo "cd - > /dev/null" >> $jobfile
4979
4980	fi
4981
4982
4983	# ABSPEICHERN DER KONFIGURATIONSDATEI
4984	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4985	echo "cat > $config_file << \"%END%\"" >> $jobfile
4986	cat $config_file >> $jobfile
4987	echo "%END%" >> $jobfile
4988	echo " " >> $jobfile
4989
4990
4991	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4992	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4993	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4994	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4995	echo "%END%" >> $jobfile
4996	echo "chmod u+x $mrun_script_name" >> $jobfile
4997	echo "execute_mrun=true" >> $jobfile
4998	echo " " >> $jobfile
4999
5000	fi
5001
5002
5003	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5004	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5005	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5006	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5007	if [[ $do_remote = true ]]
5008	then
5009	(( i = 0 ))
5010	while (( i < iin ))
5011	do
5012	(( i = i + 1 ))
5013	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5014	if [[ "${transin[$i]}" = job ]]
5015	then
5016	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5017	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5018	echo " " >> $jobfile
5019	echo "%END%" >> $jobfile
5020	else
5021	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5022	fi
5023
5024	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5025	echo "if [[ \$? = 1 ]]" >> $jobfile
5026	echo "then" >> $jobfile
5027	echo " echo \" \" " >> $jobfile
5028	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5029	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5030	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5031	echo " execute_mrun=false" >> $jobfile
5032	echo "fi" >> $jobfile
5033	done
5034	fi
5035
5036	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5037	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5038	echo "LOCAL_PWD=$working_directory" >> $jobfile
5039	echo "export LOCAL_PWD" >> $jobfile
5040
5041	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5042	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5043	echo "export LOCAL_MRUN_PATH" >> $jobfile
5044
5045	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5046	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5047	then
5048	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5049	fi
5050
5051	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5052	echo "set -x" >> $jobfile
5053	echo "queue=$queue" >> $jobfile
5054	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5055
5056	echo 'ls -al; echo `pwd`' >> $jobfile
5057	echo "cd \$HOME" >> $jobfile
5058	echo "rm -rf $TEMPDIR" >> $jobfile
5059
5060
5061
5062
5063	# JOB PER SUBJOB STARTEN
5064	if [[ $silent = false ]]
5065	then
5066	printf "\n "
5067	else
5068	printf "\n\n"
5069	fi
5070
5071	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
5072	rm -rf $jobfile
5073
5074
5075	fi # ENDE REMOTE-TEIL
5076
5077
5078
5079	# ENDE DER PROZEDUR

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