Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1045

Last change on this file since 1045 was 1045, checked in by maronga, 11 years ago
parameter file check adapted for batch jobs on local machine
Property svn:keywords set to `Id Rev`
File size: 190.7 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 1045 2012-11-07 14:41:36Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
254	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
255	# 21/03/12 - Matthias - default compiler on ibmh changed
256	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
257	# bugfixes for the parameter file check, initial
258	# commands on ssh calls sourced out to .mrun.config
259	# 05/06/12 - Bjoern - bugfixes for the parameter file check on lcxe6.
260	# combine_plot_fields can be switched off by the
261	# new mrun option -Z
262	# 08/06/12 - Bjoern - max_pr_user enabled for the namelist file check,
263	# sleep commands are now disabled in silent mode (-v)
264	# 06/08/12 - Bjoern - update: system update at imuk now requires (new)
265	# initial shell commands on ssh calls (automatic
266	# restart runs were not possible)
267	# 22/08/12 - Bjoern - bugfix: missing export statement in the previous
268	# update of the ssh calls
269	# 06/09/12 - Bjoern - typo removed: "-D_parallel" -> "-D__parallel"
270	# 02/10/12 - Siggi - adjusted for lcsb (urban00)
271	# 31/10/12 - Siggi - -T option not obligatory for lcxt5m,
272	# tasks_per_node not checked for this machine
273	# 01/11/12 - Siggi - adjusted for lckiaps
274	# 07/11/12 - Bjoern - parameter file check adapted for batch jobs on
275	# local host
276
277
278
279	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
280
281	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
282	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
283	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
284
285	AddFilenames=""
286	additional_conditions=""
287	add_source_path=""
288	afname=""
289	archive_save=true
290	archive_system=none
291	check_namelist_files=true
292	combine_plot_fields=true
293	compiler_name=""
294	cond1=""
295	cond2=""
296	config_file=.mrun.config
297	coupled_dist=""
298	coupled_mode="mpi1"
299	cpp_opts=""
300	cpp_options=""
301	cpumax=0
302	cpurest=0
303	delete_temporary_catalog=true
304	do_batch=false
305	do_compile=true
306	do_remote=false
307	do_stagein=true
308	do_stageout=true
309	do_trace=false
310	email_notification="none"
311	exclude=""
312	executable=""
313	execution_error=false
314	fimm=false
315	fname=test
316	fromhost=""
317	global_revision=""
318	group_number=none
319	host=""
320	host_file=""
321	hp=""
322	ignore_archive_error=false
323	input_list=""
324	interpreted_config_file=""
325	job_catalog="~/job_queue"
326	job_on_file=""
327	keep_data_from_previous_run=false
328	link_local_input=false
329	link_local_output=false
330	localhost_realname=$(hostname)
331	local_compile=false
332	local_dvrserver_running=.FALSE.
333	locat=normal
334	mainprog=""
335	makefile=""
336	max_par_io_str=""
337	mc=$0
338	while [[ $(echo $mc \| grep -c "/") != 0 ]]
339	do
340	mc=`echo $mc \| cut -f2- -d"/"`
341	done
342	module_calls=""
343	mrun_script_name=$mc
344	netcdf_inc=""
345	netcdf_lib=""
346	netcdf_support=false
347	node_usage=default
348	numprocs=""
349	numprocs_atmos=0
350	numprocs_ocean=0
351	OOPT=""
352	openmp=false
353	output_list=""
354	package_list=""
355	punkte="..........................................................."
356	queue=none
357	read_from_config=""
358	restart_run=false
359	if [[ `hostname` = rte10 ]]
360	then
361	return_addres=133.5.185.60
362	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
363	elif [[ `hostname` = climate0 ]]
364	then
365	return_addres=165.132.26.68
366	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
367	elif [[ `hostname` = urban00 ]]
368	then
369	return_addres=147.46.30.151
370	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
371	else
372	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
373	fi
374	return_password=""
375	return_username=$LOGNAME
376	remotecall=false
377	remote_username=""
378	run_coupled_model=false
379	run_mode=""
380	scirocco=false
381	store_on_archive_system=false
382	striche=" ----------------------------------------------------------------------------"
383	silent=false
384	source_list=""
385	source_path=SOURCE
386	tasks_per_node=""
387	threads_per_task=1
388	tmpcreate=false
389	tmp_data_catalog=""
390	transfer_problems=false
391	usern=$LOGNAME
392	use_openmp=false
393	working_directory=`pwd`
394	TOPT=""
395	XOPT=""
396	zeit=$( date \| cut -c 12-19 )
397
398	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
399	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
400
401	typeset -R30 calltime
402	typeset -L20 spalte1
403	typeset -L40 spalte2
404	typeset -L60 spalte3
405	typeset -L35 string1=`date`
406	typeset -L12 string2=$usern
407	typeset -L12 string3=$localhost_realname
408	typeset -L12 string4
409	typeset -L12 string5
410	typeset -L30 version="MRUN 2.0 Rev$Rev: 1045 $"
411
412
413
414	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
415	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
416
417	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
418	# EXPORTIERT WERDEN
419	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
420	export group_number input_list memory numprocs output_list queue run_mode
421
422
423
424	# FEHLERBEHANDLUNG
425	# BEI EXIT:
426	trap 'rm -rf $working_directory/tmp_mrun
427	if [[ $locat != localhost ]]
428	then
429	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
430	# then
431	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
432	#MRUN-calls on $localhost
433	#
434	#date and time user localhost remotehost termination mrun-command
435	#--------------------------------------------------------------------------------------------------------------------
436	#%STATEND%
437	# chmod 666 ${mrun_path}/statistik/mrun_statistik
438	# fi
439	#
440	# # EINTRAG IN DIE STATISTIK-DATEI
441	# string4=$host
442	# string5=$locat
443	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
444	# then
445	# if [[ $do_batch = true ]]
446	# then
447	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
448	# else
449	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
450	# fi
451	# fi
452	echo " " > /dev/null
453	fi
454
455	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
456	then
457
458	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
459	(( i = 0 ))
460	while (( i < iec ))
461	do
462	(( i = i + 1 ))
463	printf "\n *** Execution of ERROR-command:\n"
464	printf " >>> ${err_command[$i]}\n"
465	eval ${err_command[$i]}
466	done
467	if [[ -n $interpreted_config_file ]] then
468	rm -rf $interpreted_config_file
469	fi
470	if [[ -n .mrun_environment ]] then
471	rm -rf .mrun_environment
472	fi
473	if [[ $tmpcreate = true ]]
474	then
475	printf "\n *** Contents of \"$TEMPDIR\":\n"
476	ls -al; cd
477	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
478	fi
479	if [[ "$dvrserver_id" != "" ]]
480	then
481	echo "+++ killing dvrserver_id=$dvrserver_id"
482	kill $dvrserver_id
483	fi
484	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
485	then
486	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
487	fi
488	printf "\n\n+++ MRUN killed \n\n"
489	elif [[ $locat != control_c ]]
490	then
491	printf "\n\n --> all actions finished\n\n"
492	printf " Bye, bye $usern !!\n\n"
493	fi' exit
494
495
496	# BEI TERMINAL-BREAK:
497	trap 'rm -rf $working_directory/tmp_mrun
498	rm -rf $working_directory/tmp_check_namelist_files
499	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
500	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
501	then
502	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
503	fi
504	if [[ "$dvrserver_id" != "" ]]
505	then
506	echo "+++ killing dvrserver_id=$dvrserver_id"
507	kill $dvrserver_id
508	fi
509	printf "\n+++ MRUN killed by \"^C\" \n\n"
510	locat=control_c
511	exit
512	' 2
513
514
515	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
516	# BEEN SET
517	if [[ "$PALM_BIN" = "" ]]
518	then
519	printf "\n +++ environment variable PALM_BIN has not been set"
520	printf "\n please set it to the directory where the PALM scripts are located"
521	locat=palm_bin; exit
522	fi
523	export PATH=$PALM_BIN:$PATH
524
525
526
527	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
528	# FUER FOLGEJOBS BENOETIGT WIRD
529	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
530	do
531	case $option in
532	(a) afname=$OPTARG;;
533	(A) store_on_archive_system=true; mc="$mc -A";;
534	(b) do_batch=true; mc="$mc -b";;
535	(B) delete_temporary_catalog=false; mc="$mc -B";;
536	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
537	(C) restart_run=true; mc="$mc -C";;
538	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
539	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
540	(F) job_on_file="-D"; mc="$mc -F";;
541	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
542	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
543	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
544	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
545	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
546	(I) ignore_archive_error=true; mc="$mc -I";;
547	(k) keep_data_from_previous_run=true; mc="$mc -k";;
548	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
549	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
550	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
551	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
552	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
553	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
554	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
555	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
556	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
557	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
558	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
559	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
560	(S) read_from_config=false; mc="$mc -S";;
561	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
562	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
563	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
564	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
565	(v) silent=true; mc="$mc -v";;
566	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
567	(x) do_trace=true;set -x; mc="$mc -x";;
568	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
569	(y) ocean_file_appendix=true; mc="$mc -y";;
570	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
571	(z) check_namelist_files=false; mc="$mc -z";;
572	(Z) combine_plot_fields=false; mc="$mc -Z";;
573	(\?) printf "\n +++ unknown option $OPTARG \n"
574	printf "\n --> type \"$0 ?\" for available options \n"
575	locat=parameter;exit;;
576	esac
577	done
578
579
580	# EVTL. POSITIONSPARAMETER EINLESEN
581	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
582	shift OPTIND-1
583
584
585	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
586	if [[ "$1" = "?" ]]
587	then
588	(printf "\n *** mrun can be called as follows:\n"
589	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
590	printf "\n Description of available options:\n"
591	printf "\n Option Description Default-Value"
592	printf "\n -a base name of input files equiv. -d"
593	printf "\n -A archiving when using file-attribute fl"
594	printf "\n -b batch-job on local machine ---"
595	printf "\n -B do not delete temporary directory at end ---"
596	printf "\n -c configuration file .mrun.config"
597	printf "\n -d base name of files attached to program test"
598	printf "\n -D preprocessor(cpp)-directives \"\" "
599	printf "\n -F create remote job file only ---"
600	printf "\n -h execution host $localhost_realname"
601	printf "\n -i INPUT control list \"\" "
602	printf "\n -I archiving errors of previous batch-jobs"
603	printf "\n will be ignored"
604	printf "\n -k keep data from previous run"
605	printf "\n -K additional conditions for controling"
606	printf "\n usage of conditional code and"
607	printf "\n env-variables in configuration file \"\" "
608	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
609	printf "\n -M Makefile name Makefile"
610	printf "\n -n node usage (shared/not_shared) depending on -h"
611	printf "\n -o OUTPUT control list \"\" "
612	printf "\n -O use OpenMP ---"
613	printf "\n -p software package list \"\" "
614	printf "\n -q queue \"$queue\" "
615	printf "\n -r run control list (combines -i -o) \"\" "
616	printf "\n -s filenames of routines to be compiled \"\" "
617	printf "\n must end with .f, .f90, .F, or .c !"
618	printf "\n use \"..\" for more than one file and wildcards"
619	printf "\n -s LM compiles all locally modified files"
620	printf "\n -S config file interpreted by shellscript ---"
621	printf "\n -t allowed cpu-time in seconds (batch) 0"
622	printf "\n -T tasks per node depending on -h"
623	printf "\n -u username on remote machine \"\" "
624	printf "\n -v no prompt for confirmation ---"
625	printf "\n -w maximum parallel io streams as given by -X"
626	printf "\n -x tracing of mrun for debug purposes ---"
627	printf "\n -X # of processors (on parallel machines) 1"
628	printf "\n -y add appendix \"_O\" to all local output"
629	printf "\n files (ocean precursor runs followed by"
630	printf "\n coupled atmosphere-ocean runs) ---"
631	printf "\n -Y run coupled model, \"#1 #2\" with"
632	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
633	printf "\n -z disable a priori parameter file check ---"
634	printf "\n -Z skip combine_plot_fields at the end of "
635	printf "\n the simulation ---"
636	printf "\n "
637	printf "\n Possible values of positional parameter <modus>:"
638	printf "\n \"?\" - this outline \n\n") \| more
639	exit
640	elif [[ "$1" != "" ]]
641	then
642	printf "\n +++ positional parameter $1 unknown \n"
643	locat=parameter; exit
644	fi
645
646
647
648	# KURZE STARTMELDUNG
649	printf "\n*** $version "
650	printf "\n will be executed. Please wait ..."
651
652
653
654	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
655	if [[ ! -f $config_file ]]
656	then
657	printf "\n\n +++ configuration file: "
658	printf "\n $config_file"
659	printf "\n does not exist"
660	locat=connect; exit
661	fi
662
663
664	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
665	line=""
666	grep "%host_identifier" $config_file > tmp_mrun
667	while read line
668	do
669	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
670	then
671	HOSTNAME=`echo $line \| cut -d" " -s -f2`
672	host_identifier=`echo $line \| cut -d" " -s -f3`
673	if [[ $localhost_realname = $HOSTNAME ]]
674	then
675	localhost=$host_identifier
676	break
677	fi
678	fi
679	done < tmp_mrun
680
681	if [[ "$localhost" = "" ]]
682	then
683	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
684	printf "\n for local host \"$localhost_realname\"."
685	printf "\n Please add line"
686	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
687	printf "\n to the configuration file."
688	locat=localhost; exit
689	fi
690
691
692	# HOSTSPEZIFISCHE VARIABLEN SETZEN
693	case $localhost_realname in
694	(r1\|r2\|h01\|b01) archive_system=tivoli;;
695	(cs*) archive_system=ut;;
696	(fimm.bccs.uib.no) fimm=true;;
697	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
698	(scirocco) scirocco=true;;
699	esac
700
701
702
703	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
704	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
705	[[ "$afname" = "" ]] && afname=$fname
706
707
708	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
709	if [[ "$run_mode" != "" ]]
710	then
711	input_list="$input_list $run_mode"
712	output_list="$output_list $run_mode"
713	fi
714
715
716	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
717	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
718	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
719	# STARTET)
720	if [[ "$fromhost" = "" ]]
721	then
722	fromhost=$localhost
723	fi
724
725
726	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
727	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
728	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
729	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
730	if [[ -n $host && "$host" != $localhost ]]
731	then
732	do_batch=true
733	do_remote=true
734	case $host in
735	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
736	(*) printf "\n"
737	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
738	printf "\n is not available"
739	locat=nqs; (( iec = 0 )); exit;;
740	esac
741	else
742	host=$localhost
743	fi
744
745
746	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
747	if [[ -n $additional_conditions ]]
748	then
749	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
750	cond1=`echo $additional_conditions \| cut -d" " -f1`
751	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
752	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
753	if [[ -n $dummy ]]
754	then
755	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
756	locat=options; exit
757	fi
758	block=_$cond1
759	[[ -n $cond2 ]] && block=${block}_$cond2
760	fi
761
762
763	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
764	if [[ $run_coupled_model = true ]]
765	then
766
767	if [[ -n $coupled_dist ]]
768	then
769
770	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
771	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
772
773	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
774	then
775
776	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
777	printf "\n PEs (total) : $numprocs"
778	printf "\n PEs (atmosphere): $numprocs_atmos"
779	printf "\n PEs (ocean) : $numprocs_ocean"
780	locat=coupling; exit
781
782	fi
783
784	else
785
786	(( numprocs_ocean = $numprocs / 2 ))
787	(( numprocs_atmos = $numprocs / 2 ))
788
789	fi
790	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
791
792	# GET coupled_mode FROM THE CONFIG FILE
793	line=""
794	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
795	while read line
796	do
797	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
798	then
799	coupled_mode="mpi2"
800	fi
801	done < tmp_mrun
802
803	fi
804
805
806	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
807	# ARCHIVIERUNG FEHLGESCHLAGEN IST
808	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
809	then
810	if [[ $ignore_archive_error = false ]]
811	then
812	printf "\n +++ data archiving of previous run failed"
813	printf "\n see directory \~/job_queue on remote machine"
814	locat=archive; exit
815	else
816	printf "\n +++ warning: data archiving in a previous run failed"
817	printf "\n MRUN continues, trying to get backup copy"
818	fi
819	fi
820
821
822
823	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
824	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
825	if [[ "$read_from_config" = false ]]
826	then
827
828	[[ $silent = false ]] && printf "\n Reading the configuration file... "
829	while read zeile
830	do
831	[[ $silent = false ]] && printf "."
832
833
834	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
835	# ERSETZEN
836	eval zeile=\"$zeile\"
837
838
839	# INTERPRETATION DER ZEILE
840	if [[ "$(echo $zeile)" = "" ]]
841	then
842	# LEERZEILE, KEINE AKTION
843	continue
844
845	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
846	then
847
848	# ZEILE IST KOMMENTARZEILE
849	true
850
851	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
852	then
853
854	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
855	zeile=$(echo $zeile \| cut -c2-)
856	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
857	var=`echo $zeile \| cut -d" " -f1`
858	value=`echo $zeile \| cut -d" " -s -f2`
859	for_host=`echo $zeile \| cut -d" " -s -f3`
860	for_cond1=`echo $zeile \| cut -d" " -s -f4`
861	for_cond2=`echo $zeile \| cut -d" " -s -f5`
862
863	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
864	then
865
866	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
867	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
868	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
869
870
871	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
872	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
873	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
874	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
875	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
876	# KONFIGURATIONSDATEI
877	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
878	then
879	eval $var=\$value
880
881	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
882	if [[ $do_trace = true ]]
883	then
884	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
885	fi
886	fi
887
888	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
889	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
890	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
891	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
892	if [[ $var = host ]]
893	then
894	if [[ -n $host && "$host" != $localhost ]]
895	then
896	do_batch=true
897	do_remote=true
898	case $host in
899	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
900	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
901	printf "\n is not available"
902	locat=nqs; exit;;
903	esac
904	else
905	host=$localhost
906	fi
907	fi
908
909	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
910	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
911	# DEN PROGRAMMEN BENOETIGT WERDEN
912	export $var
913	fi
914
915
916
917
918	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
919	then
920
921	# ZEILE DEFINIERT ERROR-KOMMANDO
922	(( iec = iec + 1 ))
923	zeile=$(echo $zeile \| cut -c4-)
924	err_command[$iec]="$zeile"
925
926	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
927	then
928
929	# ZEILE DEFINIERT INPUT-KOMMANDO
930	(( iic = iic + 1 ))
931	zeile=$(echo $zeile \| cut -c4-)
932	in_command[$iic]="$zeile"
933
934	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
935	then
936
937	# ZEILE DEFINIERT OUTPUT-KOMMANDO
938	(( ioc = ioc + 1 ))
939	zeile=$(echo $zeile \| cut -c4-)
940	out_command[$ioc]="$zeile"
941
942	else
943
944	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
945	# s2a: in/out - Feld
946	# s2b: loc - Feld (optional)
947	# s2c: tr/ar - Feld (optional)
948	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
949	s1=`echo $zeile \| cut -d" " -f1`
950	s2=`echo $zeile \| cut -d" " -s -f2`
951	s2a=$(echo $s2 \| cut -d":" -f1)
952	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
953	then
954	s2b=""
955	s2c=""
956	else
957	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
958	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
959	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
960	fi
961	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
962	s3=`echo $zeile \| cut -d" " -f3`
963	s4=`echo $zeile \| cut -d" " -s -f4`
964	s5=`echo $zeile \| cut -d" " -s -f5`
965	s6=`echo $zeile \| cut -d" " -s -f6`
966
967
968	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
969	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
970	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
971	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
972	# HANDEN SEIN MUSS (D.H. s2b = loc)
973	IFSALT="$IFS"; IFS="$IFS:"
974	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
975	then
976	found=false
977	for actual in $input_list
978	do
979	for formal in $s3
980	do
981	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
982	done
983	done
984	if [[ $found = true ]]
985	then
986	(( iin = iin + 1 ))
987	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
988	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
989	extin[$iin]=$s6
990	fi
991	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
992	then
993	found=false
994	for actual in $output_list
995	do
996	for formal in $s3
997	do
998	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
999	done
1000	done
1001	if [[ $found = true ]]
1002	then
1003	(( iout = iout + 1 ))
1004	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
1005	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
1006	fi
1007	elif [[ "$s2a" != in && "$s2a" != out ]]
1008	then
1009	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
1010	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
1011	locat=connect; exit
1012	fi
1013	IFS="$IFSALT"
1014	fi
1015	done < $config_file
1016
1017	else
1018
1019
1020	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
1021	[[ $silent = false ]] && printf "..."
1022	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
1023	export interpreted_config_file=.icf.$RANDOM
1024
1025
1026
1027	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1028	# VERFUEGUNG STELLEN
1029	cat > .mrun_environment << %%END%%
1030	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1031	config_file = '$config_file', do_remote = '$do_remote',
1032	do_trace = '$do_trace', host = '$host',
1033	input_list = '$input_list', icf = '$interpreted_config_file',
1034	localhost = '$localhost', output_list = '$output_list' /
1035
1036	%%END%%
1037
1038	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1039	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1040	mrun_memory=$memory
1041	mrun_group_number=$group_number
1042	mrun_cpumax=$cpumax
1043	mrun_numprocs=$numprocs
1044
1045	if [[ $localhost_realname = "sx-fep" ]]
1046	then
1047	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1048	else
1049
1050	if [[ "$host" != $localhost ]]
1051	then
1052
1053	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1054	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1055	if [[ $? != 0 ]]
1056	then
1057	printf "\n\n +++ no interpret_config found"
1058	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1059	locat=interpret_config; exit
1060	fi
1061	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1062	$interpret_config_executable
1063
1064	else
1065
1066	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1067	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1068	then
1069	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1070	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1071	locat=interpret_config; exit
1072	else
1073	interpret_config${block}.x
1074	fi
1075
1076	fi
1077	fi
1078	rm .mrun_environment
1079
1080
1081	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1082	chmod u+x $interpreted_config_file
1083	export PATH=$PATH:.
1084	. $interpreted_config_file
1085	rm $interpreted_config_file
1086
1087
1088	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1089	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1090	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1091	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1092	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1093	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1094	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1095
1096	fi
1097
1098
1099	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1100	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1101	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1102	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1103	if [[ "$SOURCES_COMPLETE" = "" ]]
1104	then
1105
1106	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1107	# VEREINBART WURDE
1108	source_path=""
1109	line=""
1110	grep "%source_path" $config_file > tmp_mrun
1111	while read line
1112	do
1113	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1114	then
1115	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1116	then
1117	global_source_path=`echo $line \| cut -d" " -f2`
1118	fi
1119	fi
1120	done < tmp_mrun
1121
1122	line=""
1123	found=false
1124	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1125	while read line
1126	do
1127	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1128	then
1129	if [[ $found = true ]]
1130	then
1131	printf "\n\n +++ more than one source path found in configuration file"
1132	printf "\n for local host \"$localhost\" "
1133	locat=source_path; exit
1134	fi
1135	source_path=`echo $line \| cut -d" " -f2`
1136	found=true
1137	fi
1138	done < tmp_mrun
1139	rm tmp_mrun
1140
1141	if [[ "$source_path" = "" ]]
1142	then
1143	if [[ "$global_source_path" != "" ]]
1144	then
1145	source_path=$global_source_path
1146	else
1147	printf "\n\n +++ no source path found in configuration file"
1148	printf "\n for local host \"$localhost\" "
1149	locat=source_path; exit
1150	fi
1151	fi
1152	eval source_path=$source_path
1153
1154	if [[ ! -d $source_path ]]
1155	then
1156	printf "\n\n +++ source path \"$source_path\" on local host"
1157	printf "\n \"$localhost\" does not exist"
1158	locat=source_path; exit
1159	fi
1160
1161	fi
1162
1163
1164	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1165	# DURCH OPTION -G MITGETEILT)
1166	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1167	then
1168	global_revision=`svnversion $source_path 2>/dev/null`
1169	global_revision="Rev: $global_revision"
1170	fi
1171
1172
1173	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1174	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1175	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1176	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1177	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1178	if [[ -n $host && "$host" != $localhost ]]
1179	then
1180	do_batch=true
1181	do_remote=true
1182	case $host in
1183	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
1184	(*) printf "\n"
1185	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1186	printf "\n is not available"
1187	locat=nqs; (( iec = 0 )); exit;;
1188	esac
1189	else
1190	host=$localhost
1191	fi
1192
1193
1194	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1195	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1196	then
1197
1198	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1199	if [[ ! -n $numprocs ]]
1200	then
1201	printf "\n"
1202	printf "\n +++ option \"-K parallel\" requires additional specification"
1203	printf "\n of the number of processors to be used by"
1204	printf "\n mrun-option \"-X\" or by environment-variable"
1205	printf "\n \"numprocs\" in the configuration file"
1206	locat=numprocs; (( iec = 0 )); exit
1207	fi
1208
1209	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1210	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1211	# GESAMTPROZESSORANZAHL IST
1212	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1213	then
1214	printf "\n"
1215	printf "\n +++ option \"-T\" (tasks per node) is missing"
1216	printf "\n set -T option or define tasks_per_node in the config file"
1217	locat=tasks_per_node; (( iec = 0 )); exit
1218	fi
1219	if [[ $host != lcflow && $host != lcxt5m ]]
1220	then
1221	(( ival = $tasks_per_node ))
1222	(( pes = numprocs ))
1223	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1224	# then
1225	# (( pes = pes - 1 ))
1226	# fi
1227	(( ii = pes / ival ))
1228	if (( pes - ii * ival > 0 ))
1229	then
1230	printf "\n"
1231	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1232	printf "\n divisor of the total number of processors (option \"-X\")"
1233	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1234	locat=tasks_per_node; (( iec = 0 )); exit
1235	fi
1236	fi
1237
1238
1239	# IBMY HAT NUR EINEN KNOTEN
1240	if [[ $host = ibmy ]]
1241	then
1242	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1243	then
1244	printf "\n"
1245	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1246	printf "\n total number of processors (option \"-X\")"
1247	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1248	locat=tasks_per_node; (( iec = 0 )); exit
1249	fi
1250	fi
1251
1252
1253	# SETTINGS FOR SUBJOB-COMMAND
1254	TOPT="-T $tasks_per_node"
1255	OOPT="-O $threads_per_task"
1256
1257	# GESAMTZAHL DER KNOTEN BESTIMMEN
1258	if [[ "$tasks_per_node" != "" ]]
1259	then
1260	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1261	fi
1262
1263	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1264	# SETZEN
1265	if [[ $node_usage = default ]]
1266	then
1267	if [[ $host = ibms ]]
1268	then
1269	node_usage=shared
1270	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1271	then
1272	node_usage=singlejob
1273	else
1274	node_usage=not_shared
1275	fi
1276	fi
1277
1278	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1279	then
1280	printf "\n"
1281	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1282	printf "\n \"shared\" or \"not_shared\""
1283	locat=tasks_per_node; (( iec = 0 )); exit
1284	fi
1285
1286	fi
1287
1288	# PRUEFEN, OB HOSTFILE EXISTIERT
1289	if [[ -n $hostfile ]]
1290	then
1291	if [[ ! -f $hostfile ]]
1292	then
1293	printf "\n"
1294	printf "\n +++ hostfile \"$hostfile\" does not exist"
1295	locat=hostfile; exit
1296	fi
1297	fi
1298
1299	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1300	if [[ $host = ibmy && $do_remote = false ]]
1301	then
1302	if [[ ! -f $HOME/.rhosts ]]
1303	then
1304	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1305	printf "\n\n *** file:"
1306	printf "\n $HOME/.rhosts"
1307	printf "\n was created\n"
1308	fi
1309	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1310	then
1311	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1312	printf "\n\n *** file:"
1313	printf "\n $HOME/.rhosts"
1314	printf "\n was extended by the name of the current host\n"
1315	fi
1316	fi
1317
1318
1319	# Set default value for the maximum number of parallel io streams
1320	if [[ "$maximum_parallel_io_streams" = "" ]]
1321	then
1322	maximum_parallel_io_streams=$numprocs
1323	fi
1324
1325
1326	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1327	if [[ $queue = none ]]
1328	then
1329	case $host in
1330	(ibmh) queue=no_class;;
1331	(ibmkisti) queue=class.32plus;;
1332	(ibmy) queue=parallel;;
1333	(lckiaps) queue=normal;;
1334	(lckyoto) queue=ph;;
1335	(lcsgib) queue=testq;;
1336	(lcsgih) queue=testq;;
1337	(lctit) queue=S;;
1338	(nech) queue=none;;
1339	(necriam) queue=SP;;
1340	(unics) queue=unics;;
1341	esac
1342	fi
1343
1344
1345	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1346	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1347	# ERMITTELN
1348	(( i = 0 ))
1349	while (( i < iin ))
1350	do
1351	(( i = i + 1 ))
1352	(( maxcycle = 0 ))
1353
1354	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1355	if [[ "${actionin[$i]}" = di ]]
1356	then
1357	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1358	# REM-MASCHINE AUSWERTEN
1359	eval filename=${pathin[$i]}/${endin[$i]}
1360	else
1361	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1362	# REM-MASCHINE AUSWERTEN
1363	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1364	fi
1365	eval pathname=${pathin[$i]}
1366
1367	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1368	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1369	then
1370	filename_input=$filename
1371	fi
1372
1373	# PRUEFEN AUF VORHANDENSEIN
1374	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1375	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1376	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1377	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1378	then
1379	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1380	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1381	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1382	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1383	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1384	if [[ "${transin[$i]}" != "locopt" ]]
1385	then
1386	printf "\n\n +++ INPUT-file: "
1387	if [[ "${extin[$i]}" = "" ]]
1388	then
1389	printf "\n $filename"
1390	else
1391	printf "\n $filename.${extin[$i]}"
1392	fi
1393	printf "\n does not exist\n"
1394	locat=input; exit
1395	else
1396	transin[$i]="unavailable"
1397	fi
1398	else
1399
1400	# ZYKLUSNUMMER FESTSTELLEN
1401	ls -1 -d $filename > filelist 2>/dev/null
1402	ls -1 -d $filename.* >> filelist 2>/dev/null
1403	while read zeile
1404	do
1405	cycle=$(print $zeile \| cut -f2 -d".")
1406	if [[ "$cycle" = "$zeile" ]]
1407	then
1408	(( icycle = 0 ))
1409	elif [[ "$cycle" = "${extin[$i]}" ]]
1410	then
1411	(( icycle = 0 ))
1412	else
1413	(( icycle = $cycle ))
1414	fi
1415	if (( icycle > maxcycle ))
1416	then
1417	(( maxcycle = icycle ))
1418	file_to_be_used=$zeile
1419	fi
1420	done <filelist
1421	rm filelist
1422
1423	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1424	if (( maxcycle > 0 ))
1425	then
1426	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1427	then
1428	filename=${filename}.$maxcycle.${extin[$i]}
1429	else
1430	filename=${filename}.$maxcycle
1431	fi
1432	else
1433	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1434	then
1435	filename=${filename}.${extin[$i]}
1436	fi
1437	fi
1438
1439	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1440	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1441	absnamein[$i]=$filename
1442	if (( maxcycle > 0 ))
1443	then
1444	if [[ "${actionin[$i]}" = di ]]
1445	then
1446	frelin[$i]=${endin[$i]}.$maxcycle
1447	else
1448	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1449	fi
1450	else
1451	if [[ "${actionin[$i]}" = di ]]
1452	then
1453	frelin[$i]=${endin[$i]}
1454	else
1455	frelin[$i]=${afname}${endin[$i]}
1456	fi
1457	fi
1458
1459	fi
1460	done
1461
1462	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1463	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1464	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1465	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1466	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1467	(( i = 0 ))
1468	while (( i < iout ))
1469	do
1470	(( i = i + 1 ))
1471	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1472	then
1473	if [[ "${actionout[$i]}" = tr ]]
1474	then
1475	actionout[$i]=""
1476	elif [[ "${actionout[$i]}" = trpe ]]
1477	then
1478	actionout[$i]=pe
1479	elif [[ "${actionout[$i]}" = tra ]]
1480	then
1481	actionout[$i]=a
1482	fi
1483	(( maxcycle = 0 ))
1484	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1485	eval catalogname=${pathout[$i]}
1486	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1487	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1488	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1489	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1490	then
1491
1492	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1493	if cat /dev/null > $filename
1494	then
1495	rm $filename
1496	else
1497
1498	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1499	if [[ ! -d $catalogname ]]
1500	then
1501	if mkdir -p $catalogname
1502	then
1503	printf "\n\n *** directory:"
1504	printf "\n $catalogname"
1505	printf "\n was created\n"
1506	else
1507	printf "\n\n +++ OUTPUT-file:"
1508	printf "\n $filename"
1509	printf "\n cannot be created, because directory does not exist"
1510	printf "\n and cannot be created either"
1511	printf "\n"
1512	locat=output ; exit
1513	fi 2>/dev/null
1514	else
1515	printf "\n\n +++ OUTPUT-file:"
1516	printf "\n $filename"
1517	printf "\n cannot be created, although directory exists"
1518	printf "\n"
1519	locat=output ; exit
1520	fi
1521	fi 2>/dev/null
1522	else
1523
1524	# ZYKLUSNUMMER FESTSTELLEN
1525	ls -1 -d $filename > filelist 2>/dev/null
1526	ls -1 -d $filename.* >> filelist 2>/dev/null
1527	while read zeile
1528	do
1529	cycle=$(print $zeile \| cut -f2 -d".")
1530	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1531	then
1532	(( icycle = 1 ))
1533	else
1534	(( icycle = $cycle + 1 ))
1535	fi
1536	if (( icycle > maxcycle ))
1537	then
1538	(( maxcycle = icycle ))
1539	fi
1540	done <filelist
1541	rm filelist
1542	fi
1543
1544	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1545	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1546	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1547	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1548	if [[ "${actionout[$i]}" != a ]]
1549	then
1550	if (( maxcycle > 0 ))
1551	then
1552	filename=${filename}.$maxcycle
1553	if cat /dev/null > $filename
1554	then
1555	rm $filename
1556	else
1557	printf "\n +++ OUTPUT-file:"
1558	printf "\n $filename"
1559	printf "\n cannot be created"
1560	locat=output ; exit
1561	fi
1562	fi
1563	else
1564	(( maxcycle = maxcycle - 1 ))
1565	if (( maxcycle > 0 ))
1566	then
1567	filename=${filename}.$maxcycle
1568	fi
1569	fi
1570
1571	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1572	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1573	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1574	pathout[$i]=$filename
1575	if (( maxcycle > 0 ))
1576	then
1577	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1578	else
1579	frelout[$i]=${fname}${endout[$i]}
1580	fi
1581
1582	fi
1583	done
1584
1585
1586	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1587	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1588	then
1589	if [[ "$dvr_inc" = "" ]]
1590	then
1591	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1592	printf "\n This is required for the dvrp_graphics package.\n"
1593	locat=dvr; exit
1594	fi
1595	if [[ "$dvr_lib" = "" ]]
1596	then
1597	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1598	printf "\n This is required for the dvrp_graphics package.\n"
1599	locat=dvr; exit
1600	fi
1601	fi
1602
1603
1604	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1605	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1606	# UEBERSETZT ZU WERDEN)
1607	if [[ "$mainprog" = "" && "$executable" = "" ]]
1608	then
1609	printf "\n +++ neither main program nor executable defined"
1610	locat=source; exit
1611	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1612	then
1613	printf "\n +++ main program as well as executable defined"
1614	locat=source; exit
1615	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1616	then
1617	do_compile=false
1618	fi
1619
1620
1621	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1622	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1623	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1624	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1625	then
1626	rm -rf SOURCES_FOR_RUN_$fname
1627	mkdir SOURCES_FOR_RUN_$fname
1628	fi
1629
1630
1631	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1632	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1633	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1634	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1635	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1636	then
1637
1638	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1639
1640	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1641	then
1642
1643	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1644	source_list=""
1645	cd $source_path
1646
1647
1648	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1649	if [[ ! -d .svn ]]
1650	then
1651	printf "\n\n +++ source directory"
1652	printf "\n \"$source_path\" "
1653	printf "\n is not under control of \"subversion\"."
1654	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1655	fi
1656
1657
1658	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1659	Filenames=""
1660	svn status > tmp_mrun
1661	while read line
1662	do
1663	firstc=`echo $line \| cut -c1`
1664	if [[ $firstc = M \|\| $firstc = "?" ]]
1665	then
1666	Name=`echo "$line" \| cut -c8-`
1667	extension=`echo $Name \| cut -d. -f2`
1668	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1669	then
1670	Filenames="$Filenames "$Name
1671	fi
1672	fi
1673	done < tmp_mrun
1674
1675
1676	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1677	for dateiname in $Filenames
1678	do
1679	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1680	source_list=$source_list"$dateiname "
1681	done
1682
1683	cd - > /dev/null
1684
1685
1686	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1687	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1688	# VORHANDEN
1689	elif [[ "$source_list" != "" && $restart_run != true ]]
1690	then
1691
1692	cd $source_path
1693
1694	for filename in $source_list
1695	do
1696
1697	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1698	if [[ $(print $filename \| grep -c "/") != 0 ]]
1699	then
1700	printf "\n +++ source code file: $filename"
1701	printf "\n must not contain (\"/\") "
1702	locat=source; exit
1703	fi
1704
1705	if [[ ! -f $filename ]]
1706	then
1707	printf "\n +++ source code file: $filename"
1708	printf "\n does not exist"
1709	locat=source; exit
1710	else
1711	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1712	fi
1713
1714	done
1715
1716	cd - > /dev/null
1717
1718	fi
1719
1720
1721	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1722	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1723	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1724	if [[ $restart_run != true ]]
1725	then
1726
1727	if [[ ! -f "$source_path/$mainprog" ]]
1728	then
1729	printf "\n\n +++ main program: $mainprog"
1730	printf "\n does not exist in source directory"
1731	printf "\n \"$source_path\"\n"
1732	locat=source; exit
1733	else
1734	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1735	then
1736	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1737	source_list=${mainprog}" $source_list"
1738	fi
1739	fi
1740	fi
1741
1742
1743	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1744	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1745	if [[ "$restart_run" != true ]]
1746	then
1747	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1748	if [[ ! -f $makefile ]]
1749	then
1750	printf "\n +++ file \"$makefile\" does not exist"
1751	locat=make; exit
1752	else
1753	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1754	fi
1755	fi
1756
1757
1758	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1759	if [[ $restart_run != true && "$add_source_path" != "" ]]
1760	then
1761
1762	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1763	if [[ ! -d $add_source_path ]]
1764	then
1765	printf "\n\n +++ WARNING: additional source code directory"
1766	printf "\n \"$add_source_path\" "
1767	printf "\n does not exist or is not a directory."
1768	printf "\n No source code will be used from this directory!\n"
1769	add_source_path=""
1770	if [[ $silent == false ]]
1771	then
1772	sleep 3
1773	fi
1774	else
1775
1776	cd $add_source_path
1777	found=false
1778
1779	Names=$(ls -1 *.f90 2>&1)
1780	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1781	Names=$(ls -1 *.F90 2>&1)
1782	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1783	Names=$(ls -1 *.F 2>&1)
1784	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1785	Names=$(ls -1 *.f 2>&1)
1786	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1787	Names=$(ls -1 *.c 2>&1)
1788	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1789
1790	cd - > /dev/null
1791	cd SOURCES_FOR_RUN_$fname
1792
1793	# COPY MAKEFILE IF EXISTING
1794	if [[ -f $add_source_path/Makefile ]]
1795	then
1796	printf "\n\n *** user Makefile from directory"
1797	printf "\n \"$add_source_path\" is used \n"
1798	if [[ $silent == false ]]
1799	then
1800	sleep 1
1801	fi
1802	cp $add_source_path/Makefile .
1803	fi
1804
1805	for dateiname in $AddFilenames
1806	do
1807	if [[ -f $dateiname ]]
1808	then
1809	printf "\n +++ source code file \"$dateiname\" found in additional"
1810	printf "\n source code directory \"$add_source_path\" "
1811	printf "\n but was also given with option \"-s\" which means that it should be taken"
1812	printf "\n from directory \"$source_path\"."
1813	locat=source; exit
1814	fi
1815
1816	cp $add_source_path/$dateiname .
1817	source_list="$source_list $dateiname"
1818
1819	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1820	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1821	then
1822	printf "\n\n +++ user file \"$dateiname\" "
1823	printf "\n is not listed in Makefile \n"
1824	locat=source; exit
1825	else
1826
1827	# Default User-Interface von der Liste entfernen, falls Datei
1828	# ein User-Interface enthaelt
1829	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1830	# then
1831	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1832	# then
1833	# rm -rf user_interface.f90
1834	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1835	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1836	# printf "\n since a user-interface is found in file"
1837	# printf "\n \"$add_source_path/$dateiname\" \n"
1838	# sleep 3
1839	# else
1840	if [[ $found = false ]]
1841	then
1842	found=true
1843	printf "\n\n *** following user file(s) added to the"
1844	printf " files to be translated:\n "
1845	fi
1846	printf "$dateiname "
1847	if [[ $silent == false ]]
1848	then
1849	sleep 0.5
1850	fi
1851
1852	fi
1853	done
1854	[[ $found = true ]] && printf "\n"
1855	cd - > /dev/null
1856	fi
1857	fi
1858
1859
1860	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1861	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1862	if [[ $restart_run != true && -n $package_list ]]
1863	then
1864
1865	cd $source_path
1866
1867	for package in $package_list
1868	do
1869
1870	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1871
1872	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1873	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1874	# LIEFERT
1875	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1876
1877
1878	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1879	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1880	for source_list_name in $package_source_list
1881	do
1882	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1883	then
1884
1885	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1886	ending=`echo $source_list_name \| cut -f2 -d.`
1887	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1888	then
1889	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1890	source_list="$source_list $source_list_name"
1891	fi
1892	fi
1893	done
1894	done
1895
1896	cd - > /dev/null
1897	fi
1898
1899
1900	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1901	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1902	# if [[ "$restart_run" != true ]]
1903	# then
1904	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1905	# if [[ ! -f $makefile ]]
1906	# then
1907	# printf "\n +++ file \"$makefile\" does not exist"
1908	# locat=make; exit
1909	# else
1910	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1911	# fi
1912	# fi
1913
1914	fi # do_compile=true
1915
1916
1917	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1918	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1919	if [[ $do_compile = true ]]
1920	then
1921
1922	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1923	# ZUSAMMENSETZEN
1924	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1925	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1926	then
1927	cpp_options="${cpp_options},-D__ibm=__ibm"
1928	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1929	then
1930	cpp_options="$cpp_options -D__nec"
1931	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1932	then
1933	cpp_options="$cpp_options -D__lc"
1934	else
1935	cpp_options="$cpp_options -D__$localhost"
1936	fi
1937
1938	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1939	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1940	then
1941	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1942	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1943	else
1944	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1945	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1946	fi
1947
1948	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1949	if [[ -n $package_list ]]
1950	then
1951	for package in $package_list
1952	do
1953	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1954	then
1955	if [[ $package != "dvrp_graphics+1PE" ]]
1956	then
1957	cpp_options="${cpp_options},-D__$package=__$package"
1958	else
1959	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1960	export use_seperate_pe_for_dvrp_output=true
1961	fi
1962	else
1963	if [[ $package != "dvrp_graphics+1PE" ]]
1964	then
1965	cpp_options="$cpp_options -D__$package"
1966	else
1967	cpp_options="$cpp_options -D__dvrp_graphics"
1968	export use_seperate_pe_for_dvrp_output=true
1969	fi
1970	fi
1971	done
1972	fi
1973
1974	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1975	if [[ -n $cpp_opts ]]
1976	then
1977	for popts in $cpp_opts
1978	do
1979	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1980	then
1981	cpp_options="${cpp_options},-D__$popts=__$popts"
1982	else
1983	cpp_options="$cpp_options -D__$popts"
1984	fi
1985	done
1986	fi
1987
1988	else
1989
1990
1991	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1992	if [[ $do_remote = false ]]
1993	then
1994	if [[ ! -f $executable ]]
1995	then
1996	printf "\n +++ executable file: $executable"
1997	printf "\n does not exist"
1998	locat=executable; exit
1999	fi
2000	fi
2001	fi
2002
2003
2004	# JOBMODUS FESTSTELLEN
2005	if [[ "$ENVIRONMENT" = BATCH ]]
2006	then
2007	jobmo=BATCH
2008	else
2009	jobmo=INTERACTIVE
2010	fi
2011
2012
2013	# no interactive runs on lctit
2014	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2015	then
2016	printf "\n +++ no interactive runs allowed on host \"$host\" "
2017	printf "\n please submit batch job using mrun option \"-b\" \n"
2018	locat=normal; exit
2019	fi
2020
2021
2022	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2023	# DURCH BENUTZER ANDERWEITIG VEREINBART
2024	if [[ "$compiler_name" = "" ]]
2025	then
2026
2027	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2028	locat=compiler_name; exit
2029
2030	fi
2031
2032
2033	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2034	[[ $localhost = necriam ]] && compiler_name=mpif90
2035
2036
2037
2038	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2039	kennung=$RANDOM
2040	if [[ "$tmp_user_catalog" = "" ]]
2041	then
2042	if [[ $localhost = ibmh ]]
2043	then
2044	tmp_user_catalog=$SCRATCH
2045	elif [[ $localhost = nech ]]
2046	then
2047	tmp_user_catalog=$WRKSHR
2048	else
2049	tmp_user_catalog=/tmp
2050	fi
2051	fi
2052	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2053
2054
2055	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2056	# BESTIMMEN
2057	if [[ "$tmp_data_catalog" = "" ]]
2058	then
2059	if [[ $localhost = nech ]]
2060	then
2061	tmp_data_catalog=$WRKSHR/mrun_restart_data
2062	else
2063	tmp_data_catalog=/tmp/mrun_restart_data
2064	fi
2065	fi
2066
2067
2068	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2069	# ERSETZEN
2070	if [[ $do_remote = false && $do_compile = true ]]
2071	then
2072	eval fopts=\"$fopts\"
2073	eval lopts=\"$lopts\"
2074	fi
2075
2076
2077
2078	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2079	fopts="$fopts $netcdf_inc $dvr_inc"
2080	lopts="$lopts $netcdf_lib $dvr_lib"
2081	ROPTS="$ropts"
2082	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
2083	then
2084	XOPT="-X $numprocs"
2085	fi
2086
2087
2088
2089	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2090	# GRAMM BENOETIGT
2091	done=false
2092	while [[ $done = false ]]
2093	do
2094	cputime=$cpumax
2095	if (( $cputime == 0 ))
2096	then
2097	if [[ $do_batch = true ]]
2098	then
2099	printf "\n +++ cpu-time is undefined"
2100	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2101	printf "\n >>> "
2102	read cputime 1>/dev/null 2>&1
2103	else
2104	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2105	fi
2106	else
2107	done=true
2108	fi
2109	cpumax=$cputime
2110	done
2111
2112	(( minuten = cputime / 60 ))
2113	(( sekunden = cputime - minuten * 60 ))
2114
2115
2116	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2117	if [[ $do_batch = true ]]
2118	then
2119	done=false
2120	while [[ $done = false ]]
2121	do
2122	if (( memory == 0 ))
2123	then
2124	printf "\n +++ memory demand is undefined"
2125	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2126	printf "\n >>> "
2127	read memory 1>/dev/null 2>&1
2128	else
2129	done=true
2130	fi
2131	done
2132	fi
2133
2134
2135	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2136	if [[ $do_remote = true && -z $remote_username ]]
2137	then
2138	while [[ -z $remote_username ]]
2139	do
2140	printf "\n +++ username on remote host \"$host\" is undefined"
2141	printf "\n >>> Please type username:"
2142	printf "\n >>> "
2143	read remote_username
2144	done
2145	mc="$mc -u$remote_username"
2146	fi
2147
2148	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2149	if [[ "$login_init_cmd" != "" ]]
2150	then
2151	export init_cmds="${login_init_cmd};"
2152	fi
2153
2154
2155	# set module load command and export for subjob
2156	if [[ "$modules" != "" ]]
2157	then
2158	if [[ $host = lctit ]]
2159	then
2160	export module_calls=". $modules"
2161	else
2162	export module_calls="module load ${modules};"
2163	fi
2164	fi
2165
2166	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2167	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2168	then
2169	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2170	then
2171	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2172	fi
2173	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2174	# then
2175	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2176	# echo "*** module_calls = $module_calls"
2177	# fi
2178	fi
2179
2180
2181	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2182	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2183	then
2184	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2185	then
2186	mpilib=mpt
2187	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2188	then
2189	mpilib=mvapich
2190	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2191	then
2192	mpilib=impi
2193	fi
2194	fi
2195
2196
2197
2198	###########################################################################
2199	# HEADER-AUSGABE
2200	###########################################################################
2201
2202
2203	calltime=$(date)
2204	printf "\n"
2205	# [[ $silent = false ]] && clear
2206	printf "#--------------------------------------------------------------# \n"
2207	printf "\| $version$calltime \| \n"
2208	printf "\| \| \n"
2209	spalte1="called on:"; spalte2=$localhost_realname
2210	printf "\| $spalte1$spalte2 \| \n"
2211	if [[ $local_compile = false ]]
2212	then
2213	if [[ $do_remote = true ]]
2214	then
2215	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2216	else
2217	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2218	fi
2219	else
2220	spalte1="compiling test only!"; spalte2=""
2221	fi
2222	printf "\| $spalte1$spalte2 \| \n"
2223	if [[ -n $numprocs ]]
2224	then
2225	spalte1="number of PEs:"; spalte2=$numprocs
2226	printf "\| $spalte1$spalte2 \| \n"
2227	fi
2228	if [[ -n $tasks_per_node ]]
2229	then
2230	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2231	printf "\| $spalte1$spalte2 \| \n"
2232	fi
2233	if [[ $maximum_parallel_io_streams != $numprocs ]]
2234	then
2235	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2236	printf "\| $spalte1$spalte2 \| \n"
2237	fi
2238	if [[ $use_openmp = true ]]
2239	then
2240	spalte1="threads per task:"; spalte2="$threads_per_task"
2241	printf "\| $spalte1$spalte2 \| \n"
2242	fi
2243	printf "\| \| \n"
2244	if [[ $do_compile = true ]]
2245	then
2246	if [[ "$mopts" != "" ]]
2247	then
2248	spalte1="make options:"; spalte2=$mopts
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$mopts" \| cut -c41-)
2251	while [[ "$zeile" != "" ]]
2252	do
2253	spalte1=""
2254	spalte2=$zeile
2255	printf "\| $spalte1$spalte2 \| \n"
2256	zeile=$(echo "$zeile" \| cut -c41-)
2257	done
2258	fi
2259
2260	spalte1="cpp directives:"; spalte2=$cpp_options
2261	printf "\| $spalte1$spalte2 \| \n"
2262	zeile=$(echo "$cpp_options" \| cut -c41-)
2263	while [[ "$zeile" != "" ]]
2264	do
2265	spalte1=""
2266	spalte2=$zeile
2267	printf "\| $spalte1$spalte2 \| \n"
2268	zeile=$(echo "$zeile" \| cut -c41-)
2269	done
2270
2271	spalte1="compiler options:"; spalte2="$fopts"
2272	printf "\| $spalte1$spalte2 \| \n"
2273	zeile=$(echo "$fopts" \| cut -c41-)
2274	while [[ "$zeile" != "" ]]
2275	do
2276	spalte1=""
2277	spalte2=$zeile
2278	printf "\| $spalte1$spalte2 \| \n"
2279	zeile=$(echo "$zeile" \| cut -c41-)
2280	done
2281
2282	spalte1="linker options:"; spalte2=$lopts
2283	printf "\| $spalte1$spalte2 \| \n"
2284	zeile=$(echo "$lopts" \| cut -c41-)
2285	while [[ "$zeile" != "" ]]
2286	do
2287	spalte1=""
2288	spalte2=$zeile
2289	printf "\| $spalte1$spalte2 \| \n"
2290	zeile=$(echo "$zeile" \| cut -c41-)
2291	done
2292
2293	spalte1="modules to be load:"; spalte2=$modules
2294	printf "\| $spalte1$spalte2 \| \n"
2295	zeile=$(echo "$modules" \| cut -c41-)
2296	while [[ "$zeile" != "" ]]
2297	do
2298	spalte1=""
2299	spalte2=$zeile
2300	printf "\| $spalte1$spalte2 \| \n"
2301	zeile=$(echo "$zeile" \| cut -c41-)
2302	done
2303
2304	spalte1="main program":; spalte2=$mainprog
2305	printf "\| $spalte1$spalte2 \| \n"
2306	else
2307	spalte1=executable:; spalte2=$executable
2308	printf "\| $spalte1$spalte2 \| \n"
2309	fi
2310	printf "\| \| \n"
2311	spalte1="base name of files":; spalte2=$fname
2312	printf "\| $spalte1$spalte2 \| \n"
2313	if [[ $fname != $afname ]]
2314	then
2315	spalte1="base name of input files":; spalte2=$afname
2316	printf "\| $spalte1$spalte2 \| \n"
2317	fi
2318	spalte1="INPUT control list":; spalte2=$input_list
2319	printf "\| $spalte1$spalte2 \| \n"
2320	spalte1="OUTPUT control list":; spalte2=$output_list
2321	printf "\| $spalte1$spalte2 \| \n"
2322
2323	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2324	then
2325	spalte1="memory demand / PE":; spalte2="$memory MB"
2326	printf "\| $spalte1$spalte2 \| \n"
2327	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2328	printf "\| $spalte1$spalte2 \| \n"
2329	fi
2330
2331	if [[ $do_compile = true ]]
2332	then
2333	printf "\| \| \n"
2334	printf "\| Files to be compiled: \| \n"
2335	zeile=$source_list
2336	while [[ "$zeile" != "" ]]
2337	do
2338	spalte3=$zeile
2339	printf "\| $spalte3 \| \n"
2340	zeile=$(echo "$zeile" \| cut -c61-)
2341	done
2342	fi
2343	printf "#--------------------------------------------------------------#"
2344
2345
2346
2347	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2348	if [[ $do_trace = true ]]
2349	then
2350	(( i = 0 ))
2351	while (( i < iin ))
2352	do
2353	(( i = i + 1 ))
2354	if (( i == 1 ))
2355	then
2356	printf "\n\n >>> INPUT-file assignments:\n"
2357	fi
2358	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2359	done
2360	(( i = 0 ))
2361	while (( i < iout ))
2362	do
2363	(( i = i + 1 ))
2364	if (( i == 1 ))
2365	then
2366	printf "\n\n >>> OUTPUT-file assignments:\n"
2367	fi
2368	printf "\n ${localout[$i]} : ${pathout[$i]}"
2369	done
2370	(( i = 0 ))
2371	while (( i < iic ))
2372	do
2373	(( i = i + 1 ))
2374	if (( i == 1 ))
2375	then
2376	printf "\n\n >>> INPUT-commands:\n"
2377	fi
2378	printf "\n ${in_command[$i]}"
2379	done
2380	(( i = 0 ))
2381	while (( i < ioc ))
2382	do
2383	(( i = i + 1 ))
2384	if (( i == 1 ))
2385	then
2386	printf "\n\n >>> OUTPUT-commands:\n"
2387	fi
2388	printf "\n ${out_command[$i]}"
2389	done
2390	fi
2391
2392
2393	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2394	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2395	then
2396	antwort=dummy
2397	printf "\n\n"
2398	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2399	do
2400	printf " >>> everything o.k. (y/n) ? "
2401	read antwort
2402	done
2403	if [[ $antwort = n \|\| $antwort = N ]]
2404	then
2405	locat=user_abort; (( iec = 0 )); exit
2406	fi
2407	if [[ $do_batch = true ]]
2408	then
2409	printf " >>> batch-job will be created and submitted"
2410	else
2411	if [[ $local_compile = false ]]
2412	then
2413	printf " >>> MRUN will now continue to execute on this machine"
2414	else
2415	printf " >>> a test compilation will now be carried out on this machine"
2416	fi
2417	fi
2418	fi
2419
2420	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2421
2422	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2423	check_depository="${working_directory}/trunk/UTIL"
2424	check_sources="${working_directory}/tmp_check_namelist_files"
2425	skip_check=false
2426
2427	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2428	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2429	then
2430	skip_check=true
2431	reason="run on remote host or parameter file check has not been compiled."
2432	fi
2433	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2434	then
2435	skip_check=true
2436	reason="parameter file check has not been compiled."
2437	fi
2438
2439	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2440	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2441	then
2442	skip_check=true
2443	reason="serial run."
2444	fi
2445
2446	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2447	if [[ $check_namelist_files == false ]]
2448	then
2449	skip_check=true
2450	reason="-z option set."
2451	fi
2452
2453	if [[ $fromhost != $localhost ]]
2454	then
2455	skip_check=true
2456	reason="submitting host is local host."
2457	fi
2458
2459	if [[ $run_coupled_model == true ]]
2460	then
2461	skip_check=true
2462	reason="coupled run."
2463	fi
2464
2465	if [[ $restart_run == true ]]
2466	then
2467	skip_check=true
2468	reason="restart run."
2469
2470	fi
2471
2472	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2473	((last_char = `echo $filename_input \| wc -c` - 1))
2474	last_char=`echo $filename_input \|cut -c$last_char`
2475	if [[ "$last_char" == "f" ]]
2476	then
2477	skip_check=true
2478	reason="restart run.)"
2479	fi
2480
2481	if [[ $skip_check == false ]]
2482	then
2483
2484	tmp_check=${working_directory}/tmp_check
2485
2486	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2487	# NOT NECESSARILY REQUIRED
2488	line=""
2489	found=false
2490	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2491	while read line1
2492	do
2493	line="$line1"
2494	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2495	then
2496	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2497	found=true
2498	fi
2499	done < $tmp_check
2500
2501	if [[ $found = false ]]
2502	then
2503	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2504	fi
2505
2506	rm -rf ${working_directory}/tmp_check
2507
2508	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2509	for item in $input_list
2510	do
2511	if [[ "$item" == "restart" ]]
2512	then
2513	check_restart=1
2514	else
2515	check_restart=0
2516	fi
2517	done
2518
2519	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2520	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2521	then
2522	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2523	locat=check_namelist; exit
2524	fi
2525
2526	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2527	if [[ $check_restart == 1 ]]
2528	then
2529
2530
2531
2532	filenamef="${filename_input}f"
2533	if [[ ! -f $filenamef ]]
2534	then
2535	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2536	check_restart=0
2537	answer=dummy
2538	printf "\n\n"
2539
2540	if [[ $silent == false ]]
2541	then
2542	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2543	do
2544	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2545	read answer
2546	done
2547	if [[ $answer = a \|\| $answer = A ]]
2548	then
2549	printf "\n +++ Aborting...."
2550	locat=normal; exit
2551	fi
2552	fi
2553	else
2554	check_restart=1
2555	fi
2556	fi
2557
2558	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2559	mkdir $check_sources
2560	cd $check_sources
2561
2562
2563	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2564	if [[ -d $add_source_path ]]
2565	then
2566	printf "\n\n *** copying files from $check_depository"
2567	cp $check_depository/check_namelist_files.tar ./
2568
2569	printf "\n\n *** untar of makefile and source files in $check_sources"
2570	tar -xf check_namelist_files.tar > /dev/null 2>&1
2571
2572	printf "\n\n *** adding user code."
2573	cp $add_source_path/* ./
2574	touch check_namelist_files.f90
2575
2576	# GET COMPILER OPTIONS AND PERFORM MAKE
2577	printf "\n\n *** compiling code if necessary...\n"
2578
2579	# workaround for batch jobs on local machine (lcxe6)
2580	if [[ $do_batch == true && $do_remote == false ]]
2581	then
2582	eval $init_cmds
2583	fi
2584
2585	copts_check="-cpp -D__parallel -D__check"
2586	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2587
2588	# GET MAKE OUTPUT
2589	if [[ $? != 0 ]]
2590	then
2591	printf "\n +++ error during make."
2592	answer=dummy
2593	printf "\n\n"
2594	if [[ $silent == false ]]
2595	then
2596	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2597	do
2598	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2599	read answer
2600	done
2601	if [[ $answer = a \|\| $answer = A ]]
2602	then
2603	printf "\n +++ Aborting..."
2604	rm -rf $check_sources
2605	locat=normal; exit
2606	else
2607	skip_check=true
2608	fi
2609	else
2610	skip_check=true
2611	fi
2612	fi
2613	else
2614	cp $PALM_BIN/check_namelist_files.x ./
2615	fi
2616
2617	cp $filename_input ./PARIN
2618	if [[ $check_restart == 1 ]]
2619	then
2620	cp $filenamef ./PARINF
2621	fi
2622
2623	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2624	then
2625	printf "\n *** adding topography data"
2626	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2627
2628	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2629	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2630	# WHICH REQUIRE SUFFICIENT MEMORY
2631	ulimit -s unlimited
2632	fi
2633
2634	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2635	cat > ENVPAR << %%END%%
2636	&envpar run_identifier = '$fname', host = '$host',
2637	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2638	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2639	maximum_cpu_time_allowed = ${cpumax}.,
2640	revision = '$global_revision',
2641	local_dvrserver_running = $local_dvrserver_running /
2642
2643	%%END%%
2644
2645	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2646	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2647	printf "\n +++ WARNING: check_namelist_files.x not found."
2648	answer=dummy
2649	printf "\n\n"
2650
2651	if [[ $silent == false ]]
2652	then
2653	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2654	do
2655	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2656	read answer
2657	done
2658	if [[ $answer = a \|\| $answer = A ]]
2659	then
2660	printf "\n +++ Aborting..."
2661	rm -rf $check_sources
2662	locat=normal; exit
2663	else
2664	printf "\n *** Skipping parameter file check."
2665
2666	fi
2667	fi
2668
2669	elif [[ $skip_check == false ]]
2670	then
2671	# STARTING THE PARAMETER FILE CHECK
2672	printf "\n\n *** starting parameter file check..."
2673
2674	# CHECKING THE P3D FILE
2675	printf "\n\n (1) checking $filename_input"
2676	echo "$numprocs 0 0" > VARIN
2677	errors=`./check_namelist_files.x < VARIN 2>&1`
2678
2679	check_error=false
2680	if [[ "$errors" == "" ]]
2681	then
2682	printf " --> o.k."
2683	else
2684	printf " --> failed."
2685	check_error=true
2686	printf "\n\n $errors"
2687	fi
2688
2689	# CHECKING THE PD3F FILE IF NECESSARY
2690	if [[ $check_restart == 1 && $check_error == false ]]
2691	then
2692	printf "\n\n (2) checking $filenamef"
2693
2694	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2695	found=false
2696	cat PARINF\|while read line
2697	do
2698	line=$(echo $line\|sed 's/ //g')
2699	if [[ $line == "&inipar" ]]
2700	then
2701	start_search=true
2702	fi
2703
2704	if [[ $start_search == true ]]
2705	then
2706	if [[ $line == "initializing_actions='read_restart_data'" ]]
2707	then
2708	found=true
2709	break
2710	fi
2711	fi
2712
2713	if [[ $line == "/" ]]
2714	then
2715	start_search=false
2716	fi
2717
2718	done
2719
2720	if [[ $found = false ]]
2721	then
2722	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2723	printf "\n in &inipar list in $fname$p3df_suffix."
2724	rm -rf $check_sources
2725	locat=check_namelist; exit
2726	fi
2727
2728	# READ max_user_pr FROM FILES
2729	if [[ -f parin_for_check ]]
2730	then
2731	read max_pr_user < parin_for_check
2732	else
2733	max_user_pr=0
2734	fi
2735
2736	echo "$numprocs 1 $max_pr_user" > VARIN
2737	errors=`./check_namelist_files.x < VARIN 2>&1`
2738
2739	if [[ "$errors" == "" ]]
2740	then
2741	printf " --> o.k."
2742	else
2743	printf " --> failed."
2744	check_error=true
2745	printf "\n\n $errors"
2746	fi
2747	fi
2748
2749	# REPORT ERRORS AND CONTINUE/EXIT
2750	if [[ $check_error == true ]]
2751	then
2752	printf "\n +++ errors found in the parameter file!\n"
2753	answer=dummy
2754	printf "\n\n"
2755
2756	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2757	do
2758	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2759	read answer
2760	done
2761
2762	if [[ $answer = a \|\| $answer = A ]]
2763	then
2764	printf "\n +++ Aborting..."
2765	rm -rf $check_sources
2766	locat=normal; exit
2767	fi
2768	else
2769	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2770	fi
2771	rm -rf $check_sources
2772	fi
2773	else
2774	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2775	fi
2776
2777	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2778	rm -rf $check_sources
2779	cd $working_directory
2780
2781
2782	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2783	# CHENDE AKTIONEN DURCHGEFUEHRT
2784	if [[ $do_batch = false ]]
2785	then
2786
2787
2788	# TEMPORAEREN KATALOG ERZEUGEN
2789	mkdir -p $TEMPDIR
2790	chmod go+rx $TEMPDIR
2791	tmpcreate=true
2792
2793	# set striping on lustre file system
2794	# if [[ $localhost = lcsgih ]]
2795	# then
2796	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2797	# lfs getstripe $TEMPDIR
2798	# fi
2799
2800
2801	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2802	# TEMPORAERES VERZEICHNIS KOPIEREN
2803	if [[ $do_compile = true ]]
2804	then
2805
2806	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2807	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2808	if [[ $localhost = nech ]]
2809	then
2810	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2811	if mkdir -p $TEMPDIR_COMPILE
2812	then
2813	printf "\n *** \"$TEMPDIR_COMPILE\" "
2814	printf "\n is generated as temporary directory for cross compiling\n"
2815	else
2816	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2817	printf "\n needed for cross compilation failed"
2818	locat=compile
2819	exit
2820	fi
2821	else
2822	TEMPDIR_COMPILE=$TEMPDIR
2823	fi
2824
2825
2826	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2827	line=""
2828	grep "%depository_path" $config_file > tmp_mrun
2829	while read line
2830	do
2831	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2832	then
2833	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2834	then
2835	global_depository_path=`echo $line \| cut -d" " -s -f2`
2836	fi
2837	fi
2838	done < tmp_mrun
2839
2840	line=""
2841	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2842	while read line
2843	do
2844	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2845	then
2846	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2847	then
2848	local_depository_path=`echo $line \| cut -d" " -s -f2`
2849	fi
2850	fi
2851	done < tmp_mrun
2852
2853	if [[ "$local_depository_path" = "" ]]
2854	then
2855	if [[ "$global_depository_path" != "" ]]
2856	then
2857	local_depository_path=$global_depository_path
2858	else
2859	printf "\n\n +++ no depository path found in configuration file"
2860	printf "\n for local host \"$localhost\" "
2861	printf "\n please set \"\%depository_path\" in configuration file\n"
2862	locat=config_file; exit
2863	fi
2864	fi
2865	eval local_depository_path=$local_depository_path
2866	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2867	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2868
2869
2870	basename=`print $mainprog \| cut -f1 -d"."`
2871	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2872	if [[ ! -f $make_depository ]]
2873	then
2874	printf "\n"
2875	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2876	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2877	else
2878	cp $make_depository $TEMPDIR_COMPILE
2879	cd $TEMPDIR_COMPILE
2880	tar -xf $make_depository > /dev/null 2>&1
2881	cd - > /dev/null
2882	fi
2883
2884	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2885
2886	else
2887
2888	cp $executable ${TEMPDIR}/a.out
2889
2890	fi
2891
2892
2893	# WECHSEL IN TEMPORAEREN KATALOG
2894	cd $TEMPDIR
2895	printf "\n *** changed to temporary directory: $TEMPDIR"
2896
2897
2898	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2899	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2900	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2901	# ERMITTELN
2902	(( i = 0 ))
2903	while (( i < iout ))
2904	do
2905	(( i = i + 1 ))
2906	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2907	then
2908	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2909	else
2910	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2911	fi
2912	done
2913
2914
2915	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2916	if [[ $do_compile = true ]]
2917	then
2918
2919
2920	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2921	printf "\n\n\n *** compilation starts \n$striche\n"
2922	printf " *** compilation with make using following options:\n"
2923	printf " make depository: $make_depository"
2924	if [[ "$mopts" != "" ]]
2925	then
2926	printf " make options: $mopts\n"
2927	fi
2928	printf " compilername: $compiler_name\n"
2929	printf " compiler options: $fopts\n"
2930	printf " preprocessor directives: $cpp_options \n"
2931	printf " linker options: $lopts \n"
2932	if [[ "$modules" != "" ]]
2933	then
2934	printf " modules to be load: $modules \n"
2935	fi
2936	printf " source code files: $source_list \n"
2937
2938	if [[ $localhost = nech ]]
2939	then
2940	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2941	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2942	cp $TEMPDIR_COMPILE/a.out .
2943	[[ $? != 0 ]] && compile_error=true
2944	rm -rf $TEMPDIR_COMPILE
2945	elif [[ $localhost = ibmh ]]
2946	then
2947	printf " compiler is called via ssh on \"plogin1\" \n"
2948	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2949	[[ ! -f a.out ]] && compile_error=true
2950	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2951	elif [[ $localhost = lcsgib ]]
2952	then
2953	printf " compiler is called via ssh on \"bicegate0\" \n"
2954	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2955	[[ ! -f a.out ]] && compile_error=true
2956	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2957	elif [[ $localhost = lcsgih ]]
2958	then
2959	printf " compiler is called via ssh on \"hicegate0\" \n"
2960	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2961	[[ ! -f a.out ]] && compile_error=true
2962	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2963	elif [[ $localhost = lcflow ]]
2964	then
2965	printf " compiler is called via ssh on \"flow\" \n"
2966	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2967	[[ ! -f a.out ]] && compile_error=true
2968	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2969	else
2970	[[ "$init_cmds" != "" ]] && eval $init_cmds
2971	[[ "$module_calls" != "" ]] && eval $module_calls
2972	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2973
2974	fi
2975
2976	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2977	then
2978	printf "\n +++ error occured while compiling or linking"
2979	locat=compile
2980
2981	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2982	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2983	# then
2984	exit
2985	# else
2986	# locat=normal
2987	# fi
2988	else
2989	printf "$striche\n *** compilation finished \n"
2990	fi
2991	fi
2992
2993
2994	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2995	if [[ $local_compile = true ]]
2996	then
2997	cd $HOME
2998	rm -rf $TEMPDIR
2999	locat=local_compile; exit
3000	fi
3001
3002
3003	# BEREITSTELLEN DER INPUT-DATEIEN
3004	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
3005	(( i = 0 ))
3006	while (( i < iin ))
3007	do
3008	(( i = i + 1 ))
3009	if (( i == 1 ))
3010	then
3011	printf "\n\n *** providing INPUT-files:\n$striche"
3012	fi
3013
3014
3015	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3016	if [[ "${transin[$i]}" = unavailable ]]
3017	then
3018	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3019	then
3020	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3021	printf "\n is not available!"
3022	else
3023	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3024	printf "\n is not available!"
3025	fi
3026	continue
3027	fi
3028
3029	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3030	files_for_pes=false; datentyp=file
3031	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3032	then
3033	files_for_pes=true; datentyp=directory
3034	actionin[$i]=""
3035	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3036	then
3037	actionin[$i]=""
3038	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3039	then
3040	files_for_pes=true; datentyp=directory
3041	actionin[$i]="ar"
3042	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3043	then
3044	actionin[$i]="ar"
3045	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3046	then
3047	files_for_pes=true; datentyp=directory
3048	actionin[$i]="fl"
3049	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3050	then
3051	actionin[$i]="fl"
3052	fi
3053
3054	if [[ $files_for_pes = true ]]
3055	then
3056	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3057	else
3058	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3059	fi
3060
3061	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3062	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3063	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3064	# SERVER ZU HOLEN
3065	if [[ "${actionin[$i]}" = fl ]]
3066	then
3067	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3068	if [[ $files_for_pes = false ]]
3069	then
3070	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3071	then
3072	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3073	got_tmp[$i]=true
3074	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3075	then
3076	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3077	printf "\n *** trying to use backup copy in \"$WORK\" "
3078	cp $WORK/${frelin[$i]} ${localin[$i]}
3079	else
3080	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3081	printf "\n or \"$tmp_data_catalog\" does not exist!"
3082	printf "\n *** trying to get copy from archive"
3083	actionin[$i]=ar
3084	fi
3085	else
3086	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3087	then
3088	mkdir ${localin[$i]}
3089	cd $tmp_data_catalog/${frelin[$i]}
3090	for file in $(ls *)
3091	do
3092	ln $file $TEMPDIR/${localin[$i]}
3093	done
3094	cd $TEMPDIR
3095	got_tmp[$i]=true
3096	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3097	then
3098	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3099	printf "\n *** trying to use backup copy in \"$WORK\" "
3100	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3101	else
3102	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3103	printf "\n or \"$tmp_data_catalog\" does not exist!"
3104	printf "\n *** trying to get copy from archive"
3105	actionin[$i]=ar
3106	fi
3107	fi
3108	fi
3109
3110
3111	# DATEI LIEGT AUF ARCHIV-SERVER
3112	if [[ "${actionin[$i]}" = ar ]]
3113	then
3114
3115	if [[ $files_for_pes = false ]]
3116	then
3117	printf "\n file will be restored from archive-system ($archive_system)!"
3118	else
3119	printf "\n directory will be restored from archive-system ($archive_system)!"
3120	fi
3121
3122	file_restored=false
3123
3124	if [[ $archive_system = asterix ]]
3125	then
3126	do_stagein=true
3127	(( stagein_anz = 0 ))
3128	while [[ $do_stagein = true ]]
3129	do
3130	if [[ $files_for_pes = false ]]
3131	then
3132	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3133	else
3134	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3135	fi
3136	cat STAGEIN_OUTPUT
3137	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3138	then
3139	file_restored=true
3140	do_stagein=false
3141	else
3142	(( stagein_anz = stagein_anz + 1 ))
3143	if (( stagein_anz == 10 ))
3144	then
3145	printf "\n +++ stagein stoped after 10 tries"
3146	locat=stage
3147	exit
3148	fi
3149	printf "\n +++ restoring from archive failed, trying again:"
3150	sleep 900
3151	fi
3152	done
3153	elif [[ $archive_system = DMF ]]
3154	then
3155	if [[ $files_for_pes = false ]]
3156	then
3157	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3158	locat=DMF
3159	exit
3160	else
3161	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3162	cp -r $ARCHIVE/${frelin[$i]} $PWD
3163	file_restored=true
3164	fi
3165	elif [[ $archive_system = tivoli ]]
3166	then
3167	if [[ $files_for_pes = false ]]
3168	then
3169	if [[ $localhost = lcsgih ]]
3170	then
3171	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3172	else
3173	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3174	fi
3175	else
3176	(( inode = 0 ))
3177	while (( inode < nodes ))
3178	do
3179	if [[ $localhost = lcsgih ]]
3180	then
3181	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3182	else
3183	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3184	fi
3185	(( inode = inode + 1 ))
3186	done
3187	fi
3188	file_restored=true
3189	elif [[ $archive_system = ut ]]
3190	then
3191	if [[ $files_for_pes = false ]]
3192	then
3193	cp $UT/${frelin[$i]} .
3194	else
3195	(( inode = 0 ))
3196	while (( inode < nodes ))
3197	do
3198	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3199	(( inode = inode + 1 ))
3200	done
3201	fi
3202	file_restored=true
3203	else
3204	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3205	locat=rearchive
3206	exit
3207	fi
3208
3209	if [[ $file_restored = true ]]
3210	then
3211
3212	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3213	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3214	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3215	if [[ $files_for_pes = false ]]
3216	then
3217	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3218	else
3219	mkdir $tmp_data_catalog/${frelin[$i]}
3220	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3221	fi
3222	got_tmp[$i]=true
3223
3224	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3225	mv ${frelin[$i]} ${localin[$i]}
3226
3227	fi
3228	fi
3229
3230
3231	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3232	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3233	then
3234
3235	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3236	then
3237
3238	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3239	printf "\n file will be provided for $numprocs processors"
3240	mkdir ${localin[$i]}
3241	ival=$numprocs
3242	(( ii = 0 ))
3243	while (( ii <= ival-1 ))
3244	do
3245	if (( ii < 10 ))
3246	then
3247	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3248	elif (( ii < 100 ))
3249	then
3250	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3251	elif (( ii < 1000 ))
3252	then
3253	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3254	else
3255	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3256	fi
3257	(( ii = ii + 1 ))
3258	done
3259
3260	else
3261
3262	if [[ $files_for_pes = true ]]
3263	then
3264
3265	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3266	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3267	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3268	# PER MOVE UMBENANNT WERDEN
3269	printf "\n providing $numprocs files for the respective processors"
3270	mkdir ${localin[$i]}
3271	if [[ $link_local_input = true ]]
3272	then
3273	printf " using ln -f\n"
3274	cd ${absnamein[$i]}
3275	for file in $(ls *)
3276	do
3277	ln -f $file ${localin[$i]}
3278	done
3279	cd $TEMPDIR
3280	fi
3281	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3282	if [[ ! -f "${localin[$i]}/_0000" ]]
3283	then
3284	if [[ $link_local_input = true ]]
3285	then
3286	printf " ln failed for .../_0000, using cp...\n"
3287	fi
3288	cp -r ${absnamein[$i]}/* ${localin[$i]}
3289	fi
3290
3291	else
3292	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3293	if [[ $link_local_input = true ]]
3294	then
3295	printf " using ln -f\n"
3296	ln -f ${absnamein[$i]} ${localin[$i]}
3297	fi
3298	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3299	if [[ ! -f "${localin[$i]}" ]]
3300	then
3301	if [[ $link_local_input = true ]]
3302	then
3303	printf " ln failed, using cp...\n"
3304	fi
3305	cp ${absnamein[$i]} ${localin[$i]}
3306	fi
3307	fi
3308	fi
3309	fi
3310
3311	done
3312	if (( i != 0 ))
3313	then
3314	printf "\n$striche\n *** all INPUT-files provided \n"
3315	fi
3316
3317
3318	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3319	(( i = 0 ))
3320	while (( i < iic ))
3321	do
3322	(( i = i + 1 ))
3323	if (( i == 1 ))
3324	then
3325	printf "\n\n *** execution of INPUT-commands:\n$striche"
3326	fi
3327	printf "\n >>> ${in_command[$i]}"
3328	eval ${in_command[$i]}
3329	if (( i == iic ))
3330	then
3331	printf "\n$striche\n"
3332	fi
3333	done
3334
3335
3336	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3337	cpurest=${cpumax}.
3338
3339
3340	# START DVR STREAMING SERVER
3341	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3342	then
3343	if [[ "$dvr_server" != "" ]]
3344	then
3345
3346	printf "\n\n *** preparing the dvr streaming server configuration file"
3347
3348	# Check, if a dvr server is already running
3349	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3350	if [[ "$running_dvrserver_id" != "" ]]
3351	then
3352
3353	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3354	printf "\n This server is used instead starting a new one!"
3355	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3356
3357	else
3358
3359	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3360	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3361	then
3362	cp ${PALM_BIN}/.dvrserver.config .
3363
3364	# Entering the BASEDIR, UID and GID into this file
3365	user_id=`id -u`
3366	group_id=`id -g`
3367	# & is needed as seperator, because TEMPDIR contains /
3368	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3369	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3370	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3371	mv .dvrserver.3 .dvrserver.config
3372	rm .dvrserver.1 .dvrserver.2
3373
3374	# Start dvr server in background, get his id and print on terminal
3375	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3376	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3377	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3378	local_dvrserver_running=.TRUE.
3379	else
3380	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3381	printf "\n \"$PALM_BIN\" "
3382	locat=dvr
3383	exit
3384	fi
3385
3386	fi
3387
3388	else
3389	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3390	fi
3391	fi
3392
3393
3394	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3395	# LESEN VON PALM)
3396	cat > ENVPAR << %%END%%
3397	&envpar run_identifier = '$fname', host = '$localhost',
3398	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3399	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3400	maximum_cpu_time_allowed = ${cpumax}.,
3401	revision = '$global_revision',
3402	local_dvrserver_running = $local_dvrserver_running /
3403
3404	%%END%%
3405
3406
3407	# PROGRAMMSTART
3408	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3409	PATH=$PATH:$TEMPDIR
3410
3411	# MPI debug option (argument checking, slows down execution due to increased latency)
3412	if [[ "$mpi_debug" = true ]]
3413	then
3414	export MPI_CHECK_ARGS=1
3415	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3416	fi
3417
3418	if [[ "$totalview" = true ]]
3419	then
3420	printf "\n *** totalview debugger will be used"
3421	tv_opt="-tv"
3422	else
3423	tv_opt=""
3424	fi
3425
3426	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3427	then
3428	if [[ "$ENVIRONMENT" = BATCH ]]
3429	then
3430	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3431	then
3432	printf "\n +++ debug is allowed in interactive mode only"
3433	locat=debug
3434	exit
3435	fi
3436	fi
3437	if [[ $localhost = decalpha ]]
3438	then
3439	dxladebug a.out
3440	elif [[ $localhost = ibmh ]]
3441	then
3442
3443	# SETUP THE IBM MPI ENVIRONMENT
3444	export MP_SHARED_MEMORY=yes
3445	export AIXTHREADS_SCOPE=S
3446	export OMP_NUM_THREADS=$threads_per_task
3447	export AUTHSTATE=files
3448	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3449
3450	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3451	export MP_ADAPTER_USE=shared
3452	export MP_CPU_USE=multiple
3453	export MP_TIMEOUT=1200
3454
3455	unset MP_TASK_AFFINITY
3456
3457	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3458	#(( ii = 1 ))
3459	#while (( ii <= $numprocs ))
3460	#do
3461	# echo $localhost_realname >> hostfile
3462	# (( ii = ii + 1 ))
3463	#done
3464	#export MP_HOSTFILE=hostfile
3465
3466	if [[ "$LOADLBATCH" = yes ]]
3467	then
3468	totalview poe a.out $ROPTS
3469	else
3470	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3471	export TVDSVRLAUNCHCMD=ssh
3472	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3473	fi
3474	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3475	then
3476	# CURRENTLY NO DEBUGGER ON LCSGI
3477	if [[ $run_coupled_model = true ]]
3478	then
3479	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3480	locat=debug
3481	exit
3482	else
3483	echo "no_coupling" > runfile_atmos
3484	fi
3485	(( ii = $numprocs / $threads_per_task ))
3486	export OMP_NUM_THREADS=$threads_per_task
3487	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3488	if [[ $threads_per_task != 1 ]]
3489	then
3490	printf "\n threads per task: $threads_per_task"
3491	fi
3492	printf "\n\n"
3493	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3494	then
3495	# export MPI_LAUNCH_TIMEOUT=360
3496	if [[ "$totalview" = true ]]
3497	then
3498	printf "\n running totalview debugger"
3499	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3500	else
3501	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3502	fi
3503	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3504	then
3505	# ulimit -s 300000 # A too large stack size causes problems
3506	# export MV2_NUM_PORTS=2
3507	# export MV2_CPU_MAPPING=0:1:2:3
3508	if [[ "$totalview" = true ]]
3509	then
3510	printf "\n running totalview debugger"
3511	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3512	else
3513	mpiexec ./a.out $ROPTS < runfile_atmos
3514	fi
3515	fi
3516	else
3517	printf "\n +++ no debug available on \"$localhost\" "
3518	printf "\n or not implemented in mrun so far"
3519	locat=debug
3520	exit
3521	fi
3522
3523	# end debug mode
3524	else
3525
3526	# normal execution
3527	if [[ -n $numprocs ]]
3528	then
3529	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3530	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3531	then
3532	# SETUP THE IBM MPI ENVIRONMENT
3533	if [[ $host != ibmh && $host != ibmkisti ]]
3534	then
3535	export MP_SHARED_MEMORY=yes
3536	export AIXTHREAD_SCOPE=S
3537	export OMP_NUM_THREADS=$threads_per_task
3538	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3539	export AUTHSTATE=files
3540	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3541	# export MP_PRINTENV=yes
3542
3543	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3544	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3545	export MP_WAIT_MODE=poll
3546	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3547	fi
3548
3549	if [[ $host = ibmkisti ]]
3550	then
3551	export LANG=en_US
3552	export MP_SHARED_MEMORY=yes
3553	if [[ $threads_per_task = 1 ]]
3554	then
3555	export MP_SINGLE_THREAD=yes
3556	export MEMORY_AFFINITY=MCM
3557	else
3558	export OMP_NUM_THREADS=$threads_per_task
3559	fi
3560	fi
3561
3562	if [[ "$LOADLBATCH" = yes ]]
3563	then
3564	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3565	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3566	then
3567	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3568	else
3569	if [[ $run_coupled_model = false ]]
3570	then
3571	if [[ "$ocean_file_appendix" = true ]]
3572	then
3573	echo "precursor_ocean" > runfile_atmos
3574	else
3575	echo "precursor_atmos" > runfile_atmos
3576	fi
3577	else
3578	(( iia = $numprocs_atmos / $threads_per_task ))
3579	(( iio = $numprocs_ocean / $threads_per_task ))
3580	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3581	printf "\n using $coupled_mode coupling"
3582	printf "\n\n"
3583	echo "coupled_run $iia $iio" > runfile_atmos
3584	fi
3585	poe ./a.out $ROPTS < runfile_atmos
3586	fi
3587	else
3588	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3589	then
3590	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3591	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3592	then
3593	if [[ -f $hostfile ]]
3594	then
3595	cp $hostfile hostfile
3596	else
3597	(( ii = 1 ))
3598	while (( ii <= $numprocs ))
3599	do
3600	echo $localhost_realname >> hostfile
3601	(( ii = ii + 1 ))
3602	done
3603	fi
3604	export MP_HOSTFILE=hostfile
3605	if [[ $run_coupled_model = false ]]
3606	then
3607	if [[ "$ocean_file_appendix" = true ]]
3608	then
3609	echo "precursor_ocean" > runfile_atmos
3610	else
3611	echo "precursor_atmos" > runfile_atmos
3612	fi
3613	else
3614	(( iia = $numprocs_atmos / $threads_per_task ))
3615	(( iio = $numprocs_ocean / $threads_per_task ))
3616	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3617	printf "\n using $coupled_mode coupling"
3618	printf "\n\n"
3619	echo "coupled_run $iia $iio" > runfile_atmos
3620	fi
3621	if [[ $localhost = ibmy ]]
3622	then
3623	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3624	else
3625	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3626	fi
3627
3628	else
3629	if [[ "$host_file" = "" ]]
3630	then
3631	printf "\n +++ no hostfile given in configuration file"
3632	locat=config_file
3633	exit
3634	else
3635	eval host_file=$host_file
3636	fi
3637	export MP_HOSTFILE=$host_file
3638	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3639	fi
3640	fi
3641	elif [[ $host = nech \|\| $host = necriam ]]
3642	then
3643	(( ii = nodes ))
3644	if [[ $ii = 1 ]]
3645	then
3646	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3647	export MPIPROGINF=YES
3648	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3649	echo "*** execution on single node with mpirun"
3650	mpirun -np $numprocs ./a.out $ROPTS
3651	else
3652	(( i = 0 ))
3653	while (( i < ii ))
3654	do
3655	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3656	(( i = i + 1 ))
3657	done
3658
3659	echo "#!/bin/sh" > mpi_exec_shell
3660	echo " " >> mpi_exec_shell
3661	echo "set -u" >> mpi_exec_shell
3662	echo "F_ERRCNT=0" >> mpi_exec_shell
3663	echo "MPIPROGINV=YES" >> mpi_exec_shell
3664	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3665	echo "cpurest=$cpurest" >> mpi_exec_shell
3666	echo "fname=$fname" >> mpi_exec_shell
3667	echo "localhost=$localhost" >> mpi_exec_shell
3668	echo "return_addres=$return_addres" >> mpi_exec_shell
3669	echo "return_username=$return_username" >> mpi_exec_shell
3670	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3671	echo "write_binary=$write_binary" >> mpi_exec_shell
3672	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3673	echo " " >> mpi_exec_shell
3674	echo "export F_ERRCNT" >> mpi_exec_shell
3675	echo "export MPIPROGINV" >> mpi_exec_shell
3676	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3677	echo "export cpurest" >> mpi_exec_shell
3678	echo "export fname" >> mpi_exec_shell
3679	echo "export localhost" >> mpi_exec_shell
3680	echo "export return_addres" >> mpi_exec_shell
3681	echo "export return_username" >> mpi_exec_shell
3682	echo "export tasks_per_node" >> mpi_exec_shell
3683	echo "export write_binary" >> mpi_exec_shell
3684	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3685	echo " " >> mpi_exec_shell
3686	echo "exec ./a.out" >> mpi_exec_shell
3687
3688	chmod u+x mpi_exec_shell
3689	export MPIPROGINF=YES
3690	mpirun -f multinode_config &
3691	wait
3692
3693	fi
3694	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3695	then
3696
3697	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3698	# DOES NOT EXIST
3699	if [[ $host != lcsgih && $host != lcsgib ]]
3700	then
3701	if [[ -f $hostfile ]]
3702	then
3703	cp $hostfile hostfile
3704	(( ii = $numprocs / $threads_per_task ))
3705	else
3706	(( ii = 1 ))
3707	while (( ii <= $numprocs / $threads_per_task ))
3708	do
3709	echo $localhost_realname >> hostfile
3710	(( ii = ii + 1 ))
3711	done
3712	fi
3713	eval zeile=\"`head -n $ii hostfile`\"
3714	printf "\n *** running on: $zeile"
3715	fi
3716
3717	(( ii = $numprocs / $threads_per_task ))
3718	export OMP_NUM_THREADS=$threads_per_task
3719	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3720	if [[ $threads_per_task != 1 ]]
3721	then
3722	# increase stack size to unlimited, because large runs
3723	# may abort otherwise
3724	ulimit -Ss unlimited
3725	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3726	fi
3727	if [[ $run_coupled_model = false ]]
3728	then
3729	if [[ "$ocean_file_appendix" = true ]]
3730	then
3731	echo "precursor_ocean" > runfile_atmos
3732	else
3733	echo "precursor_atmos" > runfile_atmos
3734	fi
3735	printf "\n\n"
3736	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3737	then
3738	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3739	then
3740	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3741	# export MPI_DSM_DISTRIBUTE=1
3742	# MPI_DSM_CPULIST: pin MPI processes to cores
3743	if [[ $use_openmp = false ]]
3744	then
3745	if [[ "$sgi_feature" = ice2 ]]
3746	then
3747	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3748	else
3749	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3750	fi
3751	else
3752	unset MPI_DSM_CPULIST
3753	fi
3754	# MPI_IB_RAILS: use both IB rails on ICE2
3755	export MPI_BUFS_PER_HOST=512
3756	export MPI_IB_RAILS=2
3757	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3758	export MPI_CONNECTIONS_THRESHOLD=8192
3759	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3760	export MPI_TYPE_DEPTH=20
3761	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3762	export MPI_GROUP_MAX=64
3763	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3764	if [[ $use_openmp = true ]]
3765	then
3766	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3767	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3768	else
3769	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3770	fi
3771
3772	# next is test for openmp usage
3773	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3774	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3775	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3776	then
3777	export MV2_NUM_PORTS=2
3778	# The default setting of MV2_CPU_MAPPING gives best results
3779	# export MV2_ENABLE_AFFINITY=1
3780	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3781	# if [[ "$sgi_feature" = ice2 ]]
3782	# then
3783	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3784	# else
3785	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3786	# fi
3787	if [[ $use_openmp = true ]]
3788	then
3789	unset MV2_CPU_MAPPING
3790	export MV2_ENABLE_AFFINITY=0
3791	fi
3792	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3793	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3794	if [[ $use_openmp = true ]]
3795	then
3796	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3797	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3798	else
3799	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3800	fi
3801	elif [[ "$mpilib" = impi ]]
3802	then
3803	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3804	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3805	fi
3806	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3807	then
3808	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3809	elif [[ $host = lcflow ]]
3810	then
3811	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3812	elif [[ $host = lcsb ]]
3813	then
3814	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3815	elif [[ $host = lckiaps ]]
3816	then
3817	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3818	else
3819	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3820	fi
3821	else
3822
3823	# currently there is no full MPI-2 support on ICE and XT4
3824	(( iia = $numprocs_atmos / $threads_per_task ))
3825	(( iio = $numprocs_ocean / $threads_per_task ))
3826	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3827	printf "\n using $coupled_mode coupling"
3828	printf "\n\n"
3829
3830	if [[ $coupled_mode = "mpi2" ]]
3831	then
3832	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3833	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3834	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3835	then
3836
3837	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3838	then
3839	# export MPI_LAUNCH_TIMEOUT=360
3840	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3841	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3842	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3843	then
3844	# ulimit -s 300000 # A too large stack size causes problems
3845	# export MV2_NUM_PORTS=2
3846	# export MV2_CPU_MAPPING=0:1:2:3
3847	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3848	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3849	fi
3850
3851	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3852	then
3853
3854	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3855	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3856
3857	else
3858	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3859	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3860	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3861	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3862	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3863	fi
3864	wait
3865
3866	else
3867
3868	echo "coupled_run $iia $iio" > runfile_atmos
3869	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3870	then
3871
3872	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3873	then
3874	# export MPI_LAUNCH_TIMEOUT=360
3875	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3876	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3877	then
3878	# ulimit -s 300000 # A too large stack size causes problems
3879	# export MV2_NUM_PORTS=2
3880	# export MV2_CPU_MAPPING=0:1:2:3
3881	mpiexec ./a.out $ROPTS < runfile_atmos
3882	fi
3883
3884	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3885	then
3886
3887	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3888
3889	elif [[ $host = lck \|\| $host = lckordi ]]
3890	then
3891	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3892	fi
3893	wait
3894	fi
3895
3896	fi
3897	elif [[ $host = decalpha ]]
3898	then
3899	dmpirun -np $numprocs a.out $ROPTS
3900	elif [[ $host = lckyoto ]]
3901	then
3902	set -xv
3903	export P4_RSHCOMMAND=plesh
3904	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3905	if [[ "$ENVIRONMENT" = BATCH ]]
3906	then
3907	if [[ "$cond2" = fujitsu ]]
3908	then
3909	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3910	elif [[ "cond2" = pgi ]]
3911	then
3912	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3913	else
3914	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3915	fi
3916	else
3917	if [[ "$cond2" = "" ]]
3918	then
3919	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3920	else
3921	mpirun -np $numprocs ./a.out $ROPTS
3922	fi
3923	fi
3924	set +xv
3925	elif [[ $host = lctit ]]
3926	then
3927	export OMP_NUM_THREADS=$threads_per_task
3928	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3929	if [[ "$threads_per_task" != 1 ]]
3930	then
3931	export MV2_ENABLE_AFFINITY=0
3932	fi
3933	echo "----- PBS_NODEFILE content:"
3934	cat $PBS_NODEFILE
3935	echo "-----"
3936	(( ii = $numprocs / $threads_per_task ))
3937	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3938	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3939	else
3940	mpprun -n $numprocs a.out $ROPTS
3941	fi
3942	[[ $? != 0 ]] && execution_error=true
3943
3944
3945	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3946	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3947	then
3948	apprentice
3949	fi
3950	else
3951	a.out $ROPTS
3952	fi
3953	fi
3954	if [[ $? != 0 \|\| $execution_error = true ]]
3955	then
3956
3957	# ABBRUCH BEI LAUFZEITFEHLER
3958	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3959	printf "\n +++ runtime error occured"
3960	locat=execution
3961	exit
3962	else
3963	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3964	printf "\n$striche\n *** execution finished \n"
3965
3966	# Stop the dvr streaming server and process the dvr output in order
3967	# to create dvrs- and html-files containing all streams
3968	if [[ "$dvrserver_id" != "" ]]
3969	then
3970	kill $dvrserver_id
3971	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3972
3973	# If there is a directory, data have been output by the
3974	# streaming server. Otherwise, user has chosen dvrp_output=local
3975	if [[ -d DATA_DVR ]]
3976	then
3977
3978	# Add the current dvr configuration file to the dvr output
3979	# directory
3980	cp .dvrserver.config DATA_DVR
3981
3982	# Process the dvr output (option -s for also generating
3983	# sequence mode data)
3984	process_dvr_output -d DATA_DVR -f $fname -s
3985
3986	else
3987
3988	# Process the local output
3989	process_dvr_output -l -d DATA_DVR -f $fname
3990
3991	fi
3992
3993	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3994	then
3995
3996	# Process dvr output generated in local mode (dvrp_output=local)
3997	process_dvr_output -l -d DATA_DVR -f $fname
3998
3999	fi
4000	fi
4001
4002
4003
4004	# Call of combine_plot_fields in order to merge single files written
4005	# by each PE into one file.
4006	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4007	then
4008	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4009	printf "\n 2d- and/or 3d-data may be incomplete!"
4010	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4011	elif [[ "$combine_plot_fields" == true ]]
4012	then
4013	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4014	combine_plot_fields${block}.x
4015	else
4016	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4017	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4018	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4019	fi
4020
4021
4022
4023	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4024	(( i = 0 ))
4025	while (( i < ioc ))
4026	do
4027	(( i = i + 1 ))
4028	if (( i == 1 ))
4029	then
4030	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4031	fi
4032	printf "\n >>> ${out_command[$i]}"
4033	eval ${out_command[$i]}
4034	if (( i == ioc ))
4035	then
4036	printf "\n$striche\n"
4037	fi
4038	done
4039
4040
4041	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4042	if [[ $do_trace = true ]]
4043	then
4044	printf "\n\n"
4045	ls -al
4046	fi
4047
4048
4049
4050	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4051	(( i = 0 ))
4052	while (( i < iout ))
4053	do
4054	(( i = i + 1 ))
4055	if (( i == 1 ))
4056	then
4057	printf "\n\n *** saving OUTPUT-files:\n$striche"
4058	fi
4059
4060	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4061	files_for_pes=false; filetyp=file
4062	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4063	then
4064	files_for_pes=true; filetyp=directory
4065	actionout[$i]=""
4066	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4067	then
4068	actionout[$i]=""
4069	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4070	then
4071	files_for_pes=true; filetyp=directory
4072	actionout[$i]="ar"
4073	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4074	then
4075	actionout[$i]="ar"
4076	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4077	then
4078	files_for_pes=true; filetyp=directory
4079	actionout[$i]="fl"
4080	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4081	then
4082	actionout[$i]="fl"
4083	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4084	then
4085	files_for_pes=true; filetyp=directory
4086	actionout[$i]="tr"
4087	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4088	then
4089	actionout[$i]="tr"
4090	fi
4091
4092	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4093	then
4094	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4095	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4096	then
4097	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4098	else
4099
4100
4101	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4102	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4103	# REMOTE-RECHNUNGEN
4104	if [[ "${actionout[$i]}" = tr ]]
4105	then
4106	if [[ $localhost != $fromhost ]]
4107	then
4108	if [[ $files_for_pes = false ]]
4109	then
4110	cps=""
4111	cst=""
4112	else
4113	cps=-c
4114	cst="/"
4115	fi
4116	if [[ $localhost = nech ]]
4117	then
4118
4119	# TRANSFER IN EIGENSTAENDIGEM JOB
4120	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4121	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4122	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4123	if [[ $files_for_pes = false ]]
4124	then
4125	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4126	else
4127	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4128	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4129	fi
4130
4131	echo "set -x" > transfer_${localout[$i]}
4132	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4133
4134	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4135	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4136	printf "\n or higher cycle\n"
4137	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4138
4139	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4140
4141	if [[ $localhost = nech ]]
4142	then
4143	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4144	else
4145	if [[ "$LOGNAME" = b323013 ]]
4146	then
4147	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4148	else
4149	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4150	fi
4151	fi
4152
4153	else
4154
4155	# TRANSFER INNERHALB DIESES JOBS
4156	transfer_failed=false
4157	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4158	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4159	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4160	[[ $? != 0 ]] && transfer_failed=true
4161
4162	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4163	# LOKALER MASCHINE ANLEGEN
4164	if [[ $transfer_failed = true ]]
4165	then
4166	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4167	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4168
4169	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4170	# ANLEGEN.
4171	eval local_catalog=${pathout[$i]}
4172	if [[ ! -d $local_catalog ]]
4173	then
4174	printf " *** local directory does not exist. Trying to create:\n"
4175	printf " $local_catalog \n"
4176	mkdir -p $local_catalog
4177	fi
4178	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4179	transfer_problems=true
4180	fi
4181	fi
4182	else
4183
4184	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4185	actionout[$i]=""
4186	fi
4187	fi
4188
4189
4190	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4191	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4192	# REMOTE-RECHNUNGEN
4193	if [[ "${actionout[$i]}" = tra ]]
4194	then
4195	if [[ $localhost != $fromhost ]]
4196	then
4197	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4198	then
4199
4200	# TRANSFER IN EIGENSTAENDIGEM JOB
4201	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4202	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4203	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4204	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4205
4206	echo "set -x" > transfer_${localout[$i]}
4207	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4208
4209	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4210	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4211	printf "\n or higher cycle\n"
4212	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4213
4214	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4215
4216	if [[ $localhost = nech ]]
4217	then
4218	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4219	else
4220	if [[ $LOGNAME = b323013 ]]
4221	then
4222	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4223	else
4224	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4225	fi
4226	fi
4227
4228	else
4229
4230	# TRANSFER INNERHALB DIESES JOBS
4231	transfer_failed=false
4232	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4233	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4234	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4235	[[ $? != 0 ]] && transfer_failed=true
4236
4237	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4238	# LOKALER MASCHINE ANLEGEN
4239	if [[ $transfer_failed = true ]]
4240	then
4241	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4242	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4243
4244	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4245	# ANLEGEN
4246	eval local_catalog=${pathout[$i]}
4247	if [[ ! -d $local_catalog ]]
4248	then
4249	printf " *** local directory does not exist. Trying to create:\n"
4250	printf " $local_catalog \n"
4251	mkdir -p $local_catalog
4252	fi
4253
4254	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4255	transfer_problems=true
4256	fi
4257	fi
4258	else
4259
4260	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4261	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4262	actionout[$i]=a
4263	fi
4264	fi
4265
4266
4267	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4268	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4269	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4270	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4271	if [[ "${actionout[$i]}" = fl ]]
4272	then
4273	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4274	chmod g+rx $tmp_data_catalog
4275	if [[ $files_for_pes = false ]]
4276	then
4277	printf "\n >>> OUTPUT: ${localout[$i]} to"
4278	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4279	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4280	else
4281	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4282	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4283	mkdir $tmp_data_catalog/${frelout[$i]}
4284	cd ${localout[$i]}
4285	for file in $(ls *)
4286	do
4287	ln -f $file $tmp_data_catalog/${frelout[$i]}
4288	done
4289	cd $TEMPDIR
4290	fi
4291
4292
4293	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4294	if [[ $store_on_archive_system = true ]]
4295	then
4296
4297	if [[ $archive_system = asterix ]]
4298	then
4299	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4300	if [[ $files_for_pes = false ]]
4301	then
4302	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4303	else
4304	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4305	fi
4306	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4307	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4308	echo "then" >> archive_${frelout[$i]}
4309	echo " do_stageout=false" >> archive_${frelout[$i]}
4310	echo "else" >> archive_${frelout[$i]}
4311	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4312	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4313	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4314	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4315	if [[ $files_for_pes = false ]]
4316	then
4317	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4318	else
4319	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4320	fi
4321	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4322	echo "fi" >> archive_${frelout[$i]}
4323	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4324	elif [[ $archive_system = DMF ]]
4325	then
4326	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4327	if [[ $files_for_pes = false ]]
4328	then
4329	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4330	locat=DMF
4331	exit
4332	else
4333	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4334	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4335	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4336	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4337	fi
4338	elif [[ $archive_system = tivoli ]]
4339	then
4340	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4341	if [[ $files_for_pes = false ]]
4342	then
4343	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4344	echo "set -x" >> archive_${frelout[$i]}
4345	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4346	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4347	else
4348
4349	echo "set -x" >> archive_${frelout[$i]}
4350	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4351	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4352	cd $tmp_data_catalog
4353	all_files=`ls -1 ${frelout[$i]}/*`
4354	cd - > /dev/null
4355	(( inode = 0 ))
4356	(( tp1 = tasks_per_node + 1 ))
4357	while (( inode < nodes ))
4358	do
4359	# echo "*** all_files = \"$all_files\" "
4360	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4361	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4362	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4363	# echo "*** files = \"$files\" "
4364	# echo "*** all_files = \"$all_files\" "
4365	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4366	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4367	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4368	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4369	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4370	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4371	(( inode = inode + 1 ))
4372	done
4373	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4374	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4375	fi
4376	elif [[ $archive_system = ut ]]
4377	then
4378	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4379	if [[ $files_for_pes = false ]]
4380	then
4381	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4382	echo "set -x" >> archive_${frelout[$i]}
4383	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4384	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4385	else
4386
4387	echo "set -x" >> archive_${frelout[$i]}
4388	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4389	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4390	cd $tmp_data_catalog
4391	all_files=`ls -1 ${frelout[$i]}/*`
4392	cd - > /dev/null
4393	(( inode = 0 ))
4394	(( tp1 = tasks_per_node + 1 ))
4395	while (( inode < nodes ))
4396	do
4397	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4398	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4399	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4400	(( inode = inode + 1 ))
4401	done
4402	fi
4403	elif [[ $archive_system = none ]]
4404	then
4405	printf " +++ archiving on $localhost not available!\n"
4406	fi
4407
4408	if [[ $archive_system != none ]]
4409	then
4410	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4411	then
4412	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4413	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4414	elif [[ $localhost = nech ]]
4415	then
4416	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4417	fi
4418	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4419	fi
4420	else
4421	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4422	fi
4423
4424
4425	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4426	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4427	if [[ $files_for_pes = false ]]
4428	then
4429	cat /dev/null > ${pathout[$i]}
4430	else
4431	mkdir -p ${pathout[$i]}
4432	fi
4433
4434	fi
4435
4436
4437	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4438	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4439	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4440	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4441	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4442	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4443	if [[ "${actionout[$i]}" = ar ]]
4444	then
4445	if [[ $files_for_pes = false ]]
4446	then
4447	printf "\n >>> OUTPUT: ${localout[$i]} to"
4448	printf "\n ${pathout[$i]}"
4449	printf "\n File will be copied to archive-system ($archive_system) !\n"
4450	else
4451	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4452	printf "\n ${pathout[$i]}"
4453	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4454	fi
4455	mv ${localout[$i]} ${frelout[$i]}
4456
4457	file_saved=false
4458
4459	if [[ $archive_system = asterix ]]
4460	then
4461	do_stageout=true
4462	(( stageout_anz = 0 ))
4463	while [[ $do_stageout = true ]]
4464	do
4465	if [[ $files_for_pes = false ]]
4466	then
4467	stageout ${frelout[$i]} > STAGE_OUTPUT
4468	else
4469	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4470	fi
4471	cat STAGE_OUTPUT
4472	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4473	then
4474	file_saved=true
4475	do_stageout=false
4476	else
4477	if [[ $files_for_pes = false ]]
4478	then
4479	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4480	else
4481	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4482	fi
4483	(( stageout_anz = stageout_anz + 1 ))
4484	if (( stageout_anz == 10 ))
4485	then
4486	printf "\n +++ stoped after 10 unsuccessful tries!"
4487	archive_save=false
4488	do_stageout=false
4489	else
4490	printf "\n *** new try to store on archive after 15 min:"
4491	sleep 900
4492	fi
4493	fi
4494	done
4495	elif [[ $archive_system = DMF ]]
4496	then
4497	if [[ $files_for_pes = false ]]
4498	then
4499	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4500	locat=DMF
4501	exit
4502	else
4503	rm -rf $ARCHIVE/${frelout[$i]}
4504	cp -r ${frelout[$i]} $ARCHIVE
4505	fi
4506	file_saved=true
4507	elif [[ $archive_system = tivoli ]]
4508	then
4509	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4510	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4511	# GELEGT WERDEN
4512	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4513	chmod g+rx $tmp_data_catalog
4514	if [[ $files_for_pes = false ]]
4515	then
4516	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4517	else
4518	mkdir $tmp_data_catalog/${frelout[$i]}
4519	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4520	fi
4521
4522	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4523	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4524	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4525	if [[ $files_for_pes = false ]]
4526	then
4527	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4528	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4529	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4530	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4531	else
4532	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4533	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4534	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4535	fi
4536
4537	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4538	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4539	file_saved=true
4540
4541	elif [[ $archive_system = ut ]]
4542	then
4543	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4544	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4545	# GELEGT WERDEN
4546	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4547	chmod g+rx $tmp_data_catalog
4548	if [[ $files_for_pes = false ]]
4549	then
4550	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4551	else
4552	mkdir $tmp_data_catalog/${frelout[$i]}
4553	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4554	fi
4555
4556	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4557	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4558	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4559	if [[ $files_for_pes = false ]]
4560	then
4561	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4562	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4563	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4564	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4565	else
4566	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4567	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4568	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4569	fi
4570
4571	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4572	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4573	file_saved=true
4574
4575	else
4576	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4577	archive_save=false
4578	fi
4579	if [[ $file_saved = true ]]
4580	then
4581	if [[ $files_for_pes = false ]]
4582	then
4583	cat /dev/null > ${pathout[$i]}
4584	else
4585	mkdir -p ${pathout[$i]}
4586	fi
4587	fi
4588	fi
4589
4590	# APPEND AUF LOKALER MASCHINE
4591	if [[ "${actionout[$i]}" = "a" ]]
4592	then
4593	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4594	then
4595	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4596	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4597	else
4598	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4599	cat ${localout[$i]} >> ${pathout[$i]}
4600	fi
4601	fi
4602
4603	# KOPIEREN AUF LOKALER MASCHINE
4604	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4605	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4606	then
4607
4608	# KOPIEREN AUF EINPROZESSORMASCHINE
4609	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4610	then
4611	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4612	if [[ $link_local_output = true ]]
4613	then
4614	printf " using ln -f\n"
4615	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4616	fi
4617	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4618	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4619	then
4620	if [[ $link_local_output = true ]]
4621	then
4622	printf " ln failed, using cp...\n"
4623	fi
4624	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4625	fi
4626	else
4627	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4628	if [[ $link_local_output = true ]]
4629	then
4630	printf " using ln -f\n"
4631	ln -f ${localout[$i]} ${pathout[$i]}
4632	fi
4633	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4634	if [[ ! -f "${pathout[$i]}" ]]
4635	then
4636	if [[ $link_local_output = true ]]
4637	then
4638	printf " ln failed, using cp...\n"
4639	fi
4640	cp ${localout[$i]} ${pathout[$i]}
4641	fi
4642	fi
4643
4644	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4645	then
4646
4647	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4648	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4649	# WIRD DANN KOPIERT
4650	# PER MOVE UMBENANNT WERDEN
4651	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4652	if [[ $link_local_output = true ]]
4653	then
4654	printf " using ln -f\n"
4655	mkdir ${pathout[$i]}
4656	cd ${localout[$i]}
4657	for file in $(ls *)
4658	do
4659	ln -f $file ${pathout[$i]}
4660	done
4661	cd $TEMPDIR
4662	fi
4663	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4664	if [[ ! -f "${pathout[$i]}/_0000" ]]
4665	then
4666	if [[ $link_local_output = true ]]
4667	then
4668	printf " ln failed for .../_0000, using cp...\n"
4669	fi
4670	cp -r ${localout[$i]} ${pathout[$i]}
4671	fi
4672
4673	fi
4674	fi
4675	done
4676	if (( i != 0 ))
4677	then
4678	if [[ $transfer_problems = true ]]
4679	then
4680	printf "\n$striche\n *** OUTPUT-files saved"
4681	printf "\n +++ WARNING: some data transfers failed! \n"
4682	else
4683	printf "\n$striche\n *** all OUTPUT-files saved \n"
4684	fi
4685	fi
4686
4687
4688	# EVENTUELL FOLGEJOB STARTEN
4689	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4690	if [[ -f CONTINUE_RUN ]]
4691	then
4692
4693	if [[ $archive_save = true ]]
4694	then
4695
4696	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4697	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4698	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4699	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4700	# HANDEN
4701	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4702	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4703	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4704	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4705	then
4706	mc=`echo $mc \| sed 's/#/f/g'`
4707	fi
4708
4709
4710	# JOB STARTEN
4711	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4712	echo " $mc"
4713	printf "\n$striche\n"
4714	if [[ $localhost != $fromhost ]]
4715	then
4716
4717	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4718	then
4719	echo "*** ssh will be used to initiate restart-runs!"
4720	echo " return_addres=\"$return_addres\" "
4721	echo " return_username=\"$return_username\" "
4722	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4723	then
4724	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4725	else
4726	if [[ $localhost = ibmkisti ]]
4727	then
4728	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4729	else
4730	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4731	fi
4732	fi
4733	else
4734	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4735	locat=restart; exit
4736	fi
4737
4738	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4739	# DER AKTUELLE JOB ENDET
4740	if [[ $queue = special1q ]]
4741	then
4742	sleep 120
4743	else
4744	sleep 30
4745	fi
4746
4747	else
4748
4749	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4750	# RUFEN WERDEN, AUSSER AUF lcfimm
4751	cd $LOCAL_PWD
4752	if [[ $localhost = lcfimm ]]
4753	then
4754	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4755	else
4756	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4757	fi
4758	cd - > /dev/null
4759	fi
4760	printf "\n$striche\n *** restart-run initiated \n"
4761
4762
4763	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4764	# GEHOLT WORDEN SIND, LOESCHEN
4765	(( i = 0 ))
4766	while (( i < iin ))
4767	do
4768	(( i = i + 1 ))
4769	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4770	then
4771	rm -r $tmp_data_catalog/${frelin[$i]}
4772	fi
4773	done
4774
4775	else
4776
4777	printf "\n +++ no restart-run possible, since errors occured"
4778	printf "\n during the archive process"
4779	fi
4780
4781	fi
4782
4783
4784
4785	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4786	if [[ "$email_notification" != "none" ]]
4787	then
4788
4789	if [[ $localhost != $fromhost ]]
4790	then
4791	if [[ -f CONTINUE_RUN ]]
4792	then
4793	echo "PALM restart run necessary" > email_text
4794	echo "description header of actual run:" >> email_text
4795	cat CONTINUE_RUN >> email_text
4796	echo "mrun-command to restart:" >> email_text
4797	echo "$mc" >> email_text
4798	else
4799	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4800	fi
4801	mail $email_notification < email_text
4802	printf "\n *** email notification sent to \"$email_notification\" "
4803	fi
4804	fi
4805
4806
4807
4808	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4809	cd $HOME
4810	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4811
4812	else
4813
4814
4815	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4816	# CHENDE AKTIONEN DURCHGEFUEHRT
4817
4818	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4819	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4820	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4821	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4822	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4823	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4824	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4825	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4826	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4827	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4828	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4829	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4830	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4831	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4832	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4833	if [[ $use_openmp = true ]]
4834	then
4835	mrun_com=${mrun_com}" -O $threads_per_task"
4836	fi
4837	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4838	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4839	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4840	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4841	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4842	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4843	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4844	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4845	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4846	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4847	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4848	if [[ $do_remote = true ]]
4849	then
4850	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4851	fi
4852
4853
4854	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4855	jobfile=jobfile.$RANDOM
4856
4857
4858	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4859	echo "mkdir $TEMPDIR" >> $jobfile
4860	echo "cd $TEMPDIR" >> $jobfile
4861
4862
4863	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4864	if [[ $do_trace = true ]]
4865	then
4866	echo "set -x" >> $jobfile
4867	else
4868	echo "set +vx" >> $jobfile
4869	fi
4870
4871
4872	# initialize the environment and load modules
4873	if [[ "$init_cmds" != "" ]]
4874	then
4875	echo "$init_cmds" >> $jobfile
4876	fi
4877	if [[ "$module_calls" != "" ]]
4878	then
4879	echo "$module_calls" >> $jobfile
4880	fi
4881
4882
4883	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4884	# DATEI FUER DEN JOB
4885	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4886	then
4887
4888	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4889	# KOPIEREN
4890	if [[ $restart_run != true ]]
4891	then
4892	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4893	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4894	fi
4895
4896	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4897	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4898	echo "set -x" >> $jobfile
4899	if [[ $host = $localhost ]]
4900	then
4901	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4902	else
4903	if [[ $host != ibmkisti ]]
4904	then
4905	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4906	else
4907	# on KISTI's IBM firewall is only opened on interactive node
4908	echo "localdir=\`pwd\`" >> $jobfile
4909	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4910	fi
4911	fi
4912	echo "export SOURCES_COMPLETE=true" >> $jobfile
4913
4914	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4915	# ARBEITSVERZEICHNIS VERSCHIEBEN
4916	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4917	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4918	echo "execute_mrun=true" >> $jobfile
4919	echo " " >> $jobfile
4920
4921	else
4922
4923	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4924	# SOWIE GEGEBENENFALLS DES MAKEFILES
4925	if [[ $do_compile = true ]]
4926	then
4927
4928	source_catalog=SOURCES_FOR_RUN_$fname
4929
4930	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4931	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4932	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4933	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4934	echo "export SOURCES_COMPLETE=true" >> $jobfile
4935	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4936
4937	for filename in $source_list
4938	do
4939	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4940	echo "cat > $filename << \"%END%\"" >> $jobfile
4941	cat $source_catalog/$filename >> $jobfile
4942	echo " " >> $jobfile
4943	echo "%END%" >> $jobfile
4944	echo " " >> $jobfile
4945	done
4946
4947	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4948	echo "cat > Makefile << \"%END%\"" >> $jobfile
4949	cat $source_catalog/Makefile >> $jobfile
4950	echo " " >> $jobfile
4951	echo "%END%" >> $jobfile
4952	echo " " >> $jobfile
4953
4954	echo "cd - > /dev/null" >> $jobfile
4955
4956	fi
4957
4958
4959	# ABSPEICHERN DER KONFIGURATIONSDATEI
4960	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4961	echo "cat > $config_file << \"%END%\"" >> $jobfile
4962	cat $config_file >> $jobfile
4963	echo "%END%" >> $jobfile
4964	echo " " >> $jobfile
4965
4966
4967	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4968	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4969	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4970	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4971	echo "%END%" >> $jobfile
4972	echo "chmod u+x $mrun_script_name" >> $jobfile
4973	echo "execute_mrun=true" >> $jobfile
4974	echo " " >> $jobfile
4975
4976	fi
4977
4978
4979	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4980	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4981	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4982	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4983	if [[ $do_remote = true ]]
4984	then
4985	(( i = 0 ))
4986	while (( i < iin ))
4987	do
4988	(( i = i + 1 ))
4989	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4990	if [[ "${transin[$i]}" = job ]]
4991	then
4992	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4993	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4994	echo " " >> $jobfile
4995	echo "%END%" >> $jobfile
4996	else
4997	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4998	fi
4999
5000	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5001	echo "if [[ \$? = 1 ]]" >> $jobfile
5002	echo "then" >> $jobfile
5003	echo " echo \" \" " >> $jobfile
5004	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5005	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5006	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5007	echo " execute_mrun=false" >> $jobfile
5008	echo "fi" >> $jobfile
5009	done
5010	fi
5011
5012	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5013	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5014	echo "LOCAL_PWD=$working_directory" >> $jobfile
5015	echo "export LOCAL_PWD" >> $jobfile
5016
5017	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5018	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5019	echo "export LOCAL_MRUN_PATH" >> $jobfile
5020
5021	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5022	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5023	then
5024	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5025	fi
5026
5027	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5028	echo "set -x" >> $jobfile
5029	echo "queue=$queue" >> $jobfile
5030	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5031
5032	echo 'ls -al; echo `pwd`' >> $jobfile
5033	echo "cd \$HOME" >> $jobfile
5034	echo "rm -rf $TEMPDIR" >> $jobfile
5035
5036
5037
5038
5039	# JOB PER SUBJOB STARTEN
5040	if [[ $silent = false ]]
5041	then
5042	printf "\n "
5043	else
5044	printf "\n\n"
5045	fi
5046
5047	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
5048	rm -rf $jobfile
5049
5050
5051	fi # ENDE REMOTE-TEIL
5052
5053
5054
5055	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |