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mrun @ 689

Last change on this file since 689 was 683, checked in by raasch, 14 years ago

New:
---

optional exchange of ghost points in synchronous mode via MPI_SENDRCV,
steered by d3par parameter synchronous_exchange
(cpu_statistics, exchange_horiz, modules, parin)

openMP-parallelization of pressure solver (fft-method) for 2d-domain-decomposition
(poisfft, transpose)

Changed:

Errors:

mpt bugfix for netCDF4 usage (mrun)

Property svn:keywords set to Id Rev

File size: 172.2 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 683 2011-02-09 14:25:15Z gryschka $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/02/10 - Siggi - mpt bugfix for netCDF4 usage
222
223
224
225
226	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
227
228	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
229	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
230	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
231
232	AddFilenames=""
233	additional_conditions=""
234	add_source_path=""
235	afname=""
236	archive_save=true
237	archive_system=none
238	compiler_name=""
239	cond1=""
240	cond2=""
241	config_file=.mrun.config
242	coupled_dist=""
243	coupled_mode="mpi1"
244	cpp_opts=""
245	cpp_options=""
246	cpumax=0
247	cpurest=0
248	delete_temporary_catalog=true
249	do_batch=false
250	do_compile=true
251	do_remote=false
252	do_stagein=true
253	do_stageout=true
254	do_trace=false
255	email_notification="none"
256	exclude=""
257	executable=""
258	execution_error=false
259	fimm=false
260	fname=test
261	fromhost=""
262	global_revision=""
263	group_number=none
264	host=""
265	host_file=""
266	hp=""
267	ignore_archive_error=false
268	input_list=""
269	interpreted_config_file=""
270	job_catalog="~/job_queue"
271	job_on_file=""
272	keep_data_from_previous_run=false
273	link_local_input=false
274	link_local_output=false
275	localhost_realname=$(hostname)
276	local_compile=false
277	local_dvrserver_running=.FALSE.
278	locat=normal
279	mainprog=""
280	makefile=""
281	mc=$0
282	while [[ $(echo $mc \| grep -c "/") != 0 ]]
283	do
284	mc=`echo $mc \| cut -f2- -d"/"`
285	done
286	module_calls=""
287	mrun_script_name=$mc
288	netcdf_inc=""
289	netcdf_lib=""
290	netcdf_support=false
291	node_usage=default
292	numprocs=""
293	numprocs_atmos=0
294	numprocs_ocean=0
295	OOPT=""
296	openmp=false
297	output_list=""
298	package_list=""
299	punkte="..........................................................."
300	queue=none
301	read_from_config=""
302	restart_run=false
303	if [[ `hostname` = rte10 ]]
304	then
305	return_addres=133.5.185.60
306	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
307	else
308	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
309	fi
310	return_password=""
311	return_username=$LOGNAME
312	remotecall=false
313	remote_username=""
314	run_coupled_model=false
315	run_mode=""
316	scirocco=false
317	store_on_archive_system=false
318	striche=" ----------------------------------------------------------------------------"
319	silent=false
320	source_list=""
321	source_path=SOURCE
322	tasks_per_node=""
323	threads_per_task=1
324	tmpcreate=false
325	tmp_data_catalog=""
326	transfer_problems=false
327	usern=$LOGNAME
328	use_openmp=false
329	working_directory=`pwd`
330	TOPT=""
331	XOPT=""
332	zeit=$( date \| cut -c 12-19 )
333
334	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
335	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
336
337	typeset -R30 calltime
338	typeset -L20 spalte1
339	typeset -L40 spalte2
340	typeset -L60 spalte3
341	typeset -L35 string1=`date`
342	typeset -L12 string2=$usern
343	typeset -L12 string3=$localhost_realname
344	typeset -L12 string4
345	typeset -L12 string5
346	typeset -L30 version="MRUN 2.0 Rev$Rev: 683 $"
347
348
349
350	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
351	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
352
353	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
354	# EXPORTIERT WERDEN
355	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
356	export group_number input_list memory numprocs output_list queue run_mode
357
358
359
360	# FEHLERBEHANDLUNG
361	# BEI EXIT:
362	trap 'rm -rf $working_directory/tmp_mrun
363	if [[ $locat != localhost ]]
364	then
365	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
366	# then
367	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
368	#MRUN-calls on $localhost
369	#
370	#date and time user localhost remotehost termination mrun-command
371	#--------------------------------------------------------------------------------------------------------------------
372	#%STATEND%
373	# chmod 666 ${mrun_path}/statistik/mrun_statistik
374	# fi
375	#
376	# # EINTRAG IN DIE STATISTIK-DATEI
377	# string4=$host
378	# string5=$locat
379	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
380	# then
381	# if [[ $do_batch = true ]]
382	# then
383	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
384	# else
385	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
386	# fi
387	# fi
388	echo " " > /dev/null
389	fi
390
391	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
392	then
393
394	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
395	(( i = 0 ))
396	while (( i < iec ))
397	do
398	(( i = i + 1 ))
399	printf "\n *** Execution of ERROR-command:\n"
400	printf " >>> ${err_command[$i]}\n"
401	eval ${err_command[$i]}
402	done
403	if [[ -n $interpreted_config_file ]] then
404	rm -rf $interpreted_config_file
405	fi
406	if [[ -n .mrun_environment ]] then
407	rm -rf .mrun_environment
408	fi
409	if [[ $tmpcreate = true ]]
410	then
411	printf "\n *** Contents of \"$TEMPDIR\":\n"
412	ls -al; cd
413	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
414	fi
415	if [[ "$dvrserver_id" != "" ]]
416	then
417	echo "+++ killing dvrserver_id=$dvrserver_id"
418	kill $dvrserver_id
419	fi
420	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
421	then
422	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
423	fi
424	printf "\n\n+++ MRUN killed \n\n"
425	elif [[ $locat != control_c ]]
426	then
427	printf "\n\n --> all actions finished\n\n"
428	printf " Bye, bye $usern !!\n\n"
429	fi' exit
430
431
432	# BEI TERMINAL-BREAK:
433	trap 'rm -rf $working_directory/tmp_mrun
434	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
435	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
436	then
437	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
438	fi
439	if [[ "$dvrserver_id" != "" ]]
440	then
441	echo "+++ killing dvrserver_id=$dvrserver_id"
442	kill $dvrserver_id
443	fi
444	printf "\n+++ MRUN killed by \"^C\" \n\n"
445	locat=control_c
446	exit
447	' 2
448
449
450	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
451	# BEEN SET
452	if [[ "$PALM_BIN" = "" ]]
453	then
454	printf "\n +++ environment variable PALM_BIN has not been set"
455	printf "\n please set it to the directory where the PALM scripts are located"
456	locat=palm_bin; exit
457	fi
458	export PATH=$PALM_BIN:$PATH
459
460
461
462	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
463	# FUER FOLGEJOBS BENOETIGT WIRD
464	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
465	do
466	case $option in
467	(a) afname=$OPTARG;;
468	(A) store_on_archive_system=true; mc="$mc -A";;
469	(b) do_batch=true; mc="$mc -b";;
470	(B) delete_temporary_catalog=false; mc="$mc -B";;
471	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
472	(C) restart_run=true; mc="$mc -C";;
473	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
474	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
475	(F) job_on_file="-D"; mc="$mc -F";;
476	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
477	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
478	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
479	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
480	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
481	(I) ignore_archive_error=true; mc="$mc -I";;
482	(k) keep_data_from_previous_run=true; mc="$mc -k";;
483	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
484	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
485	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
486	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
487	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
488	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
489	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
490	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
491	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
492	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
493	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
494	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
495	(S) read_from_config=false; mc="$mc -S";;
496	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
497	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
498	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
499	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
500	(v) silent=true; mc="$mc -v";;
501	(x) do_trace=true;set -x; mc="$mc -x";;
502	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
503	(y) ocean_file_appendix=true; mc="$mc -y";;
504	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
505	(\?) printf "\n +++ unknown option $OPTARG \n"
506	printf "\n --> type \"$0 ?\" for available options \n"
507	locat=parameter;exit;;
508	esac
509	done
510
511
512	# EVTL. POSITIONSPARAMETER EINLESEN
513	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
514	shift OPTIND-1
515
516
517	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
518	if [[ "$1" = "?" ]]
519	then
520	(printf "\n *** mrun can be called as follows:\n"
521	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
522	printf "\n Description of available options:\n"
523	printf "\n Option Description Default-Value"
524	printf "\n -a base name of input files equiv. -d"
525	printf "\n -A archiving when using file-attribute fl"
526	printf "\n -b batch-job on local machine ---"
527	printf "\n -B do not delete temporary directory at end ---"
528	printf "\n -c configuration file .mrun.config"
529	printf "\n -d base name of files attached to program test"
530	printf "\n -D preprocessor(cpp)-directives \"\" "
531	printf "\n -F create remote job file only ---"
532	printf "\n -h execution host $localhost_realname"
533	printf "\n -i INPUT control list \"\" "
534	printf "\n -I archiving errors of previous batch-jobs"
535	printf "\n will be ignored"
536	printf "\n -k keep data from previous run"
537	printf "\n -K additional conditions for controling"
538	printf "\n usage of conditional code and"
539	printf "\n env-variables in configuration file \"\" "
540	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
541	printf "\n -M Makefile name Makefile"
542	printf "\n -n node usage (shared/not_shared) depending on -h"
543	printf "\n -o OUTPUT control list \"\" "
544	printf "\n -O use OpenMP ---"
545	printf "\n -p software package list \"\" "
546	printf "\n -q queue \"$queue\" "
547	printf "\n -r run control list (combines -i -o) \"\" "
548	printf "\n -s filenames of routines to be compiled \"\" "
549	printf "\n must end with .f, .f90, .F, or .c !"
550	printf "\n use \"..\" for more than one file and wildcards"
551	printf "\n -s TEST compiles all files with w-permit"
552	printf "\n -S config file interpreted by shellscript ---"
553	printf "\n -t allowed cpu-time in seconds (batch) 0"
554	printf "\n -T tasks per node depending on -h"
555	printf "\n -u username on remote machine \"\" "
556	printf "\n -v no prompt for confirmation ---"
557	printf "\n -x tracing of mrun for debug purposes ---"
558	printf "\n -X # of processors (on parallel machines) 1"
559	printf "\n -y add appendix \"_O\" to all local output"
560	printf "\n files (ocean precursor runs followed by"
561	printf "\n coupled atmosphere-ocean runs) ---"
562	printf "\n -Y run coupled model, \"#1 #2\" with"
563	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
564	printf "\n "
565	printf "\n Possible values of positional parameter <modus>:"
566	printf "\n \"?\" - this outline \n\n") \| more
567	exit
568	elif [[ "$1" != "" ]]
569	then
570	printf "\n +++ positional parameter $1 unknown \n"
571	locat=parameter; exit
572	fi
573
574
575
576	# KURZE STARTMELDUNG
577	printf "\n*** $version "
578	printf "\n will be executed. Please wait ..."
579
580
581
582	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
583	if [[ ! -f $config_file ]]
584	then
585	printf "\n\n +++ configuration file: "
586	printf "\n $config_file"
587	printf "\n does not exist"
588	locat=connect; exit
589	fi
590
591
592	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
593	line=""
594	grep "%host_identifier" $config_file > tmp_mrun
595	while read line
596	do
597	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
598	then
599	HOSTNAME=`echo $line \| cut -d" " -s -f2`
600	host_identifier=`echo $line \| cut -d" " -s -f3`
601	if [[ $localhost_realname = $HOSTNAME ]]
602	then
603	localhost=$host_identifier
604	break
605	fi
606	fi
607	done < tmp_mrun
608
609	if [[ "$localhost" = "" ]]
610	then
611	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
612	printf "\n for local host \"$localhost_realname\"."
613	printf "\n Please add line"
614	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
615	printf "\n to the configuration file."
616	locat=localhost; exit
617	fi
618
619
620	# HOSTSPEZIFISCHE VARIABLEN SETZEN
621	case $localhost_realname in
622	(r1\|r2\|h01\|b01) archive_system=tivoli;;
623	(cs*) archive_system=ut;;
624	(fimm.bccs.uib.no) fimm=true;;
625	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
626	(scirocco) scirocco=true;;
627	esac
628
629
630
631	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
632	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
633	[[ "$afname" = "" ]] && afname=$fname
634
635
636	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
637	if [[ "$run_mode" != "" ]]
638	then
639	input_list="$input_list $run_mode"
640	output_list="$output_list $run_mode"
641	fi
642
643
644	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
645	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
646	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
647	# STARTET)
648	if [[ "$fromhost" = "" ]]
649	then
650	fromhost=$localhost
651	fi
652
653
654	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
655	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
656	then
657	source_list=TEST
658	local_compile=true
659	host=$localhost
660	fi
661
662
663	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
664	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
665	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
666	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
667	if [[ -n $host && "$host" != $localhost ]]
668	then
669	do_batch=true
670	do_remote=true
671	case $host in
672	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
673	(*) printf "\n"
674	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
675	printf "\n is not available"
676	locat=nqs; (( iec = 0 )); exit;;
677	esac
678	else
679	host=$localhost
680	fi
681
682
683	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
684	if [[ -n $additional_conditions ]]
685	then
686	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
687	cond1=`echo $additional_conditions \| cut -d" " -f1`
688	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
689	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
690	if [[ -n $dummy ]]
691	then
692	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
693	locat=options; exit
694	fi
695	block=_$cond1
696	[[ -n $cond2 ]] && block=${block}_$cond2
697	fi
698
699
700	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
701	if [[ $run_coupled_model = true ]]
702	then
703
704	if [[ -n $coupled_dist ]]
705	then
706
707	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
708	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
709
710	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
711	then
712
713	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
714	printf "\n PEs (total) : $numprocs"
715	printf "\n PEs (atmosphere): $numprocs_atmos"
716	printf "\n PEs (ocean) : $numprocs_ocean"
717	locat=coupling; exit
718
719	fi
720
721	else
722
723	(( numprocs_ocean = $numprocs / 2 ))
724	(( numprocs_atmos = $numprocs / 2 ))
725
726	fi
727	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
728
729	# GET coupled_mode FROM THE CONFIG FILE
730	line=""
731	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
732	while read line
733	do
734	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
735	then
736	coupled_mode="mpi2"
737	fi
738	done < tmp_mrun
739
740	fi
741
742
743	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
744	# ARCHIVIERUNG FEHLGESCHLAGEN IST
745	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
746	then
747	if [[ $ignore_archive_error = false ]]
748	then
749	printf "\n +++ data archiving of previous run failed"
750	printf "\n see directory \~/job_queue on remote machine"
751	locat=archive; exit
752	else
753	printf "\n +++ warning: data archiving in a previous run failed"
754	printf "\n MRUN continues, trying to get backup copy"
755	fi
756	fi
757
758
759
760	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
761	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
762	if [[ "$read_from_config" = false ]]
763	then
764
765	[[ $silent = false ]] && printf "\n Reading the configuration file... "
766	while read zeile
767	do
768	[[ $silent = false ]] && printf "."
769
770
771	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
772	# ERSETZEN
773	eval zeile=\"$zeile\"
774
775
776	# INTERPRETATION DER ZEILE
777	if [[ "$(echo $zeile)" = "" ]]
778	then
779	# LEERZEILE, KEINE AKTION
780	continue
781
782	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
783	then
784
785	# ZEILE IST KOMMENTARZEILE
786	true
787
788	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
789	then
790
791	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
792	zeile=$(echo $zeile \| cut -c2-)
793	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
794	var=`echo $zeile \| cut -d" " -f1`
795	value=`echo $zeile \| cut -d" " -s -f2`
796	for_host=`echo $zeile \| cut -d" " -s -f3`
797	for_cond1=`echo $zeile \| cut -d" " -s -f4`
798	for_cond2=`echo $zeile \| cut -d" " -s -f5`
799
800	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
801	then
802
803	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
804	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
805	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
806
807
808	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
809	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
810	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
811	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
812	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
813	# KONFIGURATIONSDATEI
814	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
815	then
816	eval $var=\$value
817
818	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
819	if [[ $do_trace = true ]]
820	then
821	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
822	fi
823	fi
824
825	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
826	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
827	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
828	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
829	if [[ $var = host ]]
830	then
831	if [[ -n $host && "$host" != $localhost ]]
832	then
833	do_batch=true
834	do_remote=true
835	case $host in
836	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
837	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
838	printf "\n is not available"
839	locat=nqs; exit;;
840	esac
841	else
842	host=$localhost
843	fi
844	fi
845
846	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
847	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
848	# DEN PROGRAMMEN BENOETIGT WERDEN
849	export $var
850	fi
851
852
853
854
855	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
856	then
857
858	# ZEILE DEFINIERT ERROR-KOMMANDO
859	(( iec = iec + 1 ))
860	zeile=$(echo $zeile \| cut -c4-)
861	err_command[$iec]="$zeile"
862
863	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
864	then
865
866	# ZEILE DEFINIERT INPUT-KOMMANDO
867	(( iic = iic + 1 ))
868	zeile=$(echo $zeile \| cut -c4-)
869	in_command[$iic]="$zeile"
870
871	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
872	then
873
874	# ZEILE DEFINIERT OUTPUT-KOMMANDO
875	(( ioc = ioc + 1 ))
876	zeile=$(echo $zeile \| cut -c4-)
877	out_command[$ioc]="$zeile"
878
879	else
880
881	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
882	# s2a: in/out - Feld
883	# s2b: loc - Feld (optional)
884	# s2c: tr/ar - Feld (optional)
885	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
886	s1=`echo $zeile \| cut -d" " -f1`
887	s2=`echo $zeile \| cut -d" " -s -f2`
888	s2a=$(echo $s2 \| cut -d":" -f1)
889	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
890	then
891	s2b=""
892	s2c=""
893	else
894	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
895	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
896	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
897	fi
898	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
899	s3=`echo $zeile \| cut -d" " -f3`
900	s4=`echo $zeile \| cut -d" " -s -f4`
901	s5=`echo $zeile \| cut -d" " -s -f5`
902	s6=`echo $zeile \| cut -d" " -s -f6`
903
904
905	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
906	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
907	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
908	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
909	# HANDEN SEIN MUSS (D.H. s2b = loc)
910	IFSALT="$IFS"; IFS="$IFS:"
911	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
912	then
913	found=false
914	for actual in $input_list
915	do
916	for formal in $s3
917	do
918	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
919	done
920	done
921	if [[ $found = true ]]
922	then
923	(( iin = iin + 1 ))
924	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
925	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
926	extin[$iin]=$s6
927	fi
928	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
929	then
930	found=false
931	for actual in $output_list
932	do
933	for formal in $s3
934	do
935	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
936	done
937	done
938	if [[ $found = true ]]
939	then
940	(( iout = iout + 1 ))
941	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
942	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
943	fi
944	elif [[ "$s2a" != in && "$s2a" != out ]]
945	then
946	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
947	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
948	locat=connect; exit
949	fi
950	IFS="$IFSALT"
951	fi
952	done < $config_file
953
954	else
955
956
957	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
958	[[ $silent = false ]] && printf "..."
959	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
960	export interpreted_config_file=.icf.$RANDOM
961
962
963
964	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
965	# VERFUEGUNG STELLEN
966	cat > .mrun_environment << %%END%%
967	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
968	config_file = '$config_file', do_remote = '$do_remote',
969	do_trace = '$do_trace', host = '$host',
970	input_list = '$input_list', icf = '$interpreted_config_file',
971	localhost = '$localhost', output_list = '$output_list' /
972
973	%%END%%
974
975	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
976	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
977	mrun_memory=$memory
978	mrun_group_number=$group_number
979	mrun_cpumax=$cpumax
980	mrun_numprocs=$numprocs
981
982	if [[ $localhost_realname = "sx-fep" ]]
983	then
984	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
985	else
986
987	if [[ "$host" != $localhost ]]
988	then
989
990	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
991	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
992	if [[ $? != 0 ]]
993	then
994	printf "\n\n +++ no interpret_config found"
995	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
996	locat=interpret_config; exit
997	fi
998	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
999	$interpret_config_executable
1000
1001	else
1002
1003	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1004	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1005	then
1006	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1007	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1008	locat=interpret_config; exit
1009	else
1010	interpret_config${block}.x
1011	fi
1012
1013	fi
1014	fi
1015	rm .mrun_environment
1016
1017
1018	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1019	chmod u+x $interpreted_config_file
1020	export PATH=$PATH:.
1021	. $interpreted_config_file
1022	rm $interpreted_config_file
1023
1024
1025	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1026	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1027	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1028	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1029	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1030
1031	fi
1032
1033
1034	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1035	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1036	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1037	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1038	if [[ "$SOURCES_COMPLETE" = "" ]]
1039	then
1040
1041	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1042	# VEREINBART WURDE
1043	source_path=""
1044	line=""
1045	grep "%source_path" $config_file > tmp_mrun
1046	while read line
1047	do
1048	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1049	then
1050	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1051	then
1052	global_source_path=`echo $line \| cut -d" " -f2`
1053	fi
1054	fi
1055	done < tmp_mrun
1056
1057	line=""
1058	found=false
1059	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1060	while read line
1061	do
1062	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1063	then
1064	if [[ $found = true ]]
1065	then
1066	printf "\n\n +++ more than one source path found in configuration file"
1067	printf "\n for local host \"$localhost\" "
1068	locat=source_path; exit
1069	fi
1070	source_path=`echo $line \| cut -d" " -f2`
1071	found=true
1072	fi
1073	done < tmp_mrun
1074	rm tmp_mrun
1075
1076	if [[ "$source_path" = "" ]]
1077	then
1078	if [[ "$global_source_path" != "" ]]
1079	then
1080	source_path=$global_source_path
1081	else
1082	printf "\n\n +++ no source path found in configuration file"
1083	printf "\n for local host \"$localhost\" "
1084	locat=source_path; exit
1085	fi
1086	fi
1087	eval source_path=$source_path
1088
1089	if [[ ! -d $source_path ]]
1090	then
1091	printf "\n\n +++ source path \"$source_path\" on local host"
1092	printf "\n \"$localhost\" does not exist"
1093	locat=source_path; exit
1094	fi
1095
1096	fi
1097
1098
1099	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1100	# DURCH OPTION -G MITGETEILT)
1101	if [[ "$global_revision" = "" ]]
1102	then
1103	global_revision=`svnversion $source_path 2>/dev/null`
1104	global_revision="Rev: $global_revision"
1105	fi
1106
1107
1108	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1109	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1110	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1111	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1112	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1113	if [[ -n $host && "$host" != $localhost ]]
1114	then
1115	do_batch=true
1116	do_remote=true
1117	case $host in
1118	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1119	(*) printf "\n"
1120	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1121	printf "\n is not available"
1122	locat=nqs; (( iec = 0 )); exit;;
1123	esac
1124	else
1125	host=$localhost
1126	fi
1127
1128
1129	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1130	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1131	then
1132
1133	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1134	if [[ ! -n $numprocs ]]
1135	then
1136	printf "\n"
1137	printf "\n +++ option \"-K parallel\" requires additional specification"
1138	printf "\n of the number of processors to be used by"
1139	printf "\n mrun-option \"-X\" or by environment-variable"
1140	printf "\n \"numprocs\" in the configuration file"
1141	locat=numprocs; (( iec = 0 )); exit
1142	fi
1143
1144	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1145	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1146	# GESAMTPROZESSORANZAHL IST
1147	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1148	then
1149	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1150	(( ival = $tasks_per_node ))
1151	(( pes = numprocs ))
1152	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1153	# then
1154	# (( pes = pes - 1 ))
1155	# fi
1156	(( ii = pes / ival ))
1157	if (( pes - ii * ival > 0 ))
1158	then
1159	printf "\n"
1160	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1161	printf "\n divisor of the total number of processors (option \"-X\")"
1162	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1163	locat=tasks_per_node; (( iec = 0 )); exit
1164	fi
1165	fi
1166
1167	# IBMY HAT NUR EINEN KNOTEN
1168	if [[ $host = ibmy ]]
1169	then
1170	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1171	then
1172	printf "\n"
1173	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1174	printf "\n total number of processors (option \"-X\")"
1175	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1176	locat=tasks_per_node; (( iec = 0 )); exit
1177	fi
1178	fi
1179
1180	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1181	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1182	# if [[ $use_openmp = true ]]
1183	# then
1184	# threads_per_task=$tasks_per_node
1185	# tasks_per_node=1
1186	# fi
1187
1188	# SETTINGS FOR SUBJOB-COMMAND
1189	TOPT="-T $tasks_per_node"
1190	OOPT="-O $threads_per_task"
1191
1192	# GESAMTZAHL DER KNOTEN BESTIMMEN
1193	if [[ "$tasks_per_node" != "" ]]
1194	then
1195	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1196	fi
1197
1198	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1199	# SETZEN
1200	if [[ $node_usage = default ]]
1201	then
1202	if [[ $host = ibms ]]
1203	then
1204	node_usage=shared
1205	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1206	then
1207	node_usage=singlejob
1208	else
1209	node_usage=not_shared
1210	fi
1211	fi
1212
1213	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1214	then
1215	printf "\n"
1216	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1217	printf "\n \"shared\" or \"not_shared\""
1218	locat=tasks_per_node; (( iec = 0 )); exit
1219	fi
1220
1221	fi
1222
1223	# PRUEFEN, OB HOSTFILE EXISTIERT
1224	if [[ -n $hostfile ]]
1225	then
1226	if [[ ! -f $hostfile ]]
1227	then
1228	printf "\n"
1229	printf "\n +++ hostfile \"$hostfile\" does not exist"
1230	locat=hostfile; exit
1231	fi
1232	fi
1233
1234	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1235	if [[ $host = ibmy && $do_remote = false ]]
1236	then
1237	if [[ ! -f $HOME/.rhosts ]]
1238	then
1239	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1240	printf "\n\n *** file:"
1241	printf "\n $HOME/.rhosts"
1242	printf "\n was created\n"
1243	fi
1244	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1245	then
1246	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1247	printf "\n\n *** file:"
1248	printf "\n $HOME/.rhosts"
1249	printf "\n was extended by the name of the current host\n"
1250	fi
1251	fi
1252
1253
1254
1255	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1256	if [[ $queue = none ]]
1257	then
1258	case $host in
1259	(ibmh) queue=no_class;;
1260	(ibmy) queue=parallel;;
1261	(lckyoto) queue=ph;;
1262	(lcsgib) queue=bigq;;
1263	(lcsgih) queue=bigq;;
1264	(lctit) queue=S;;
1265	(nech) queue=none;;
1266	(necriam) queue=SP;;
1267	(unics) queue=unics;;
1268	esac
1269	fi
1270
1271
1272	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1273	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1274	# ERMITTELN
1275	(( i = 0 ))
1276	while (( i < iin ))
1277	do
1278	(( i = i + 1 ))
1279	(( maxcycle = 0 ))
1280
1281	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1282	if [[ "${actionin[$i]}" = di ]]
1283	then
1284	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1285	# REM-MASCHINE AUSWERTEN
1286	eval filename=${pathin[$i]}/${endin[$i]}
1287	else
1288	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1289	# REM-MASCHINE AUSWERTEN
1290	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1291	fi
1292
1293	# PRUEFEN AUF VORHANDENSEIN
1294	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1295	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1296	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1297	then
1298	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1299	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1300	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1301	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1302	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1303	if [[ "${transin[$i]}" != "locopt" ]]
1304	then
1305	printf "\n\n +++ INPUT-file: "
1306	if [[ "${extin[$i]}" = "" ]]
1307	then
1308	printf "\n $filename"
1309	else
1310	printf "\n $filename.${extin[$i]}"
1311	fi
1312	printf "\n does not exist\n"
1313	locat=input; exit
1314	else
1315	transin[$i]="unavailable"
1316	fi
1317	else
1318
1319	# ZYKLUSNUMMER FESTSTELLEN
1320	ls -1 -d $filename > filelist 2>/dev/null
1321	ls -1 -d $filename.* >> filelist 2>/dev/null
1322	while read zeile
1323	do
1324	cycle=$(print $zeile \| cut -f2 -d".")
1325	if [[ "$cycle" = "$zeile" ]]
1326	then
1327	(( icycle = 0 ))
1328	elif [[ "$cycle" = "${extin[$i]}" ]]
1329	then
1330	(( icycle = 0 ))
1331	else
1332	(( icycle = $cycle ))
1333	fi
1334	if (( icycle > maxcycle ))
1335	then
1336	(( maxcycle = icycle ))
1337	file_to_be_used=$zeile
1338	fi
1339	done <filelist
1340	rm filelist
1341
1342	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1343	if (( maxcycle > 0 ))
1344	then
1345	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1346	then
1347	filename=${filename}.$maxcycle.${extin[$i]}
1348	else
1349	filename=${filename}.$maxcycle
1350	fi
1351	else
1352	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1353	then
1354	filename=${filename}.${extin[$i]}
1355	fi
1356	fi
1357
1358	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1359	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1360	absnamein[$i]=$filename
1361	if (( maxcycle > 0 ))
1362	then
1363	if [[ "${actionin[$i]}" = di ]]
1364	then
1365	frelin[$i]=${endin[$i]}.$maxcycle
1366	else
1367	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1368	fi
1369	else
1370	if [[ "${actionin[$i]}" = di ]]
1371	then
1372	frelin[$i]=${endin[$i]}
1373	else
1374	frelin[$i]=${afname}${endin[$i]}
1375	fi
1376	fi
1377
1378	fi
1379	done
1380
1381
1382	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1383	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1384	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1385	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1386	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1387	(( i = 0 ))
1388	while (( i < iout ))
1389	do
1390	(( i = i + 1 ))
1391	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1392	then
1393	if [[ "${actionout[$i]}" = tr ]]
1394	then
1395	actionout[$i]=""
1396	elif [[ "${actionout[$i]}" = trpe ]]
1397	then
1398	actionout[$i]=pe
1399	elif [[ "${actionout[$i]}" = tra ]]
1400	then
1401	actionout[$i]=a
1402	fi
1403	(( maxcycle = 0 ))
1404	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1405	eval catalogname=${pathout[$i]}
1406	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1407	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1408	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1409	then
1410
1411	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1412	if cat /dev/null > $filename
1413	then
1414	rm $filename
1415	else
1416
1417	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1418	if [[ ! -d $catalogname ]]
1419	then
1420	if mkdir -p $catalogname
1421	then
1422	printf "\n\n *** directory:"
1423	printf "\n $catalogname"
1424	printf "\n was created\n"
1425	else
1426	printf "\n\n +++ OUTPUT-file:"
1427	printf "\n $filename"
1428	printf "\n cannot be created, because directory does not exist"
1429	printf "\n and cannot be created either"
1430	printf "\n"
1431	locat=output ; exit
1432	fi 2>/dev/null
1433	else
1434	printf "\n\n +++ OUTPUT-file:"
1435	printf "\n $filename"
1436	printf "\n cannot be created, although directory exists"
1437	printf "\n"
1438	locat=output ; exit
1439	fi
1440	fi 2>/dev/null
1441	else
1442
1443	# ZYKLUSNUMMER FESTSTELLEN
1444	ls -1 -d $filename > filelist 2>/dev/null
1445	ls -1 -d $filename.* >> filelist 2>/dev/null
1446	while read zeile
1447	do
1448	cycle=$(print $zeile \| cut -f2 -d".")
1449	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1450	then
1451	(( icycle = 1 ))
1452	else
1453	(( icycle = $cycle + 1 ))
1454	fi
1455	if (( icycle > maxcycle ))
1456	then
1457	(( maxcycle = icycle ))
1458	fi
1459	done <filelist
1460	rm filelist
1461	fi
1462
1463	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1464	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1465	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1466	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1467	if [[ "${actionout[$i]}" != a ]]
1468	then
1469	if (( maxcycle > 0 ))
1470	then
1471	filename=${filename}.$maxcycle
1472	if cat /dev/null > $filename
1473	then
1474	rm $filename
1475	else
1476	printf "\n +++ OUTPUT-file:"
1477	printf "\n $filename"
1478	printf "\n cannot be created"
1479	locat=output ; exit
1480	fi
1481	fi
1482	else
1483	(( maxcycle = maxcycle - 1 ))
1484	if (( maxcycle > 0 ))
1485	then
1486	filename=${filename}.$maxcycle
1487	fi
1488	fi
1489
1490	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1491	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1492	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1493	pathout[$i]=$filename
1494	if (( maxcycle > 0 ))
1495	then
1496	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1497	else
1498	frelout[$i]=${fname}${endout[$i]}
1499	fi
1500
1501	fi
1502	done
1503
1504
1505	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1506	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1507	then
1508	if [[ "$dvr_inc" = "" ]]
1509	then
1510	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1511	printf "\n This is required for the dvrp_graphics package.\n"
1512	locat=dvr; exit
1513	fi
1514	if [[ "$dvr_lib" = "" ]]
1515	then
1516	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1517	printf "\n This is required for the dvrp_graphics package.\n"
1518	locat=dvr; exit
1519	fi
1520	fi
1521
1522
1523	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1524	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1525	# UEBERSETZT ZU WERDEN)
1526	if [[ "$mainprog" = "" && "$executable" = "" ]]
1527	then
1528	printf "\n +++ neither main program nor executable defined"
1529	locat=source; exit
1530	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1531	then
1532	printf "\n +++ main program as well as executable defined"
1533	locat=source; exit
1534	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1535	then
1536	do_compile=false
1537	fi
1538
1539
1540	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1541	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1542	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1543	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1544	then
1545	rm -rf SOURCES_FOR_RUN_$fname
1546	mkdir SOURCES_FOR_RUN_$fname
1547	fi
1548
1549
1550	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1551	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1552	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1553	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1554	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1555	then
1556
1557	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1558	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1559
1560
1561	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1562	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1563	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1564	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1565	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1566	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1567	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1568	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1569	# GESAMMELT
1570	if [[ "$source_list" = WRITE_PERMIT ]]
1571	then
1572
1573	source_list=""
1574	cd $source_path
1575
1576
1577	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1578	Names=$(ls -1 *.f90 2>&1)
1579	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1580	Names=$(ls -1 *.F90 2>&1)
1581	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1582	Names=$(ls -1 *.F 2>&1)
1583	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1584	Names=$(ls -1 *.f 2>&1)
1585	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1586	Names=$(ls -1 *.c 2>&1)
1587	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1588
1589
1590	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1591	for dateiname in $Filenames
1592	do
1593	if [[ -w $dateiname ]]
1594	then
1595	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1596	then
1597	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1598	source_list=$source_list"$dateiname "
1599	fi
1600	fi
1601	done
1602
1603	cd - > /dev/null
1604
1605
1606	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1607	then
1608
1609	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1610	source_list=""
1611	cd $source_path
1612
1613
1614	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1615	if [[ ! -d .svn ]]
1616	then
1617	printf "\n\n +++ source directory"
1618	printf "\n \"$source_path\" "
1619	printf "\n is not under control of \"subversion\"."
1620	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1621	fi
1622
1623
1624	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1625	Filenames=""
1626	svn status > tmp_mrun
1627	while read line
1628	do
1629	firstc=`echo $line \| cut -c1`
1630	if [[ $firstc = M \|\| $firstc = "?" ]]
1631	then
1632	Name=`echo "$line" \| cut -c8-`
1633	extension=`echo $Name \| cut -d. -f2`
1634	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1635	then
1636	Filenames="$Filenames "$Name
1637	fi
1638	fi
1639	done < tmp_mrun
1640
1641
1642	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1643	for dateiname in $Filenames
1644	do
1645	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1646	source_list=$source_list"$dateiname "
1647	done
1648
1649	cd - > /dev/null
1650
1651
1652	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1653	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1654	# VORHANDEN
1655	elif [[ "$source_list" != "" && $restart_run != true ]]
1656	then
1657
1658	cd $source_path
1659
1660	for filename in $source_list
1661	do
1662
1663	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1664	if [[ $(print $filename \| grep -c "/") != 0 ]]
1665	then
1666	printf "\n +++ source code file: $filename"
1667	printf "\n must not contain (\"/\") "
1668	locat=source; exit
1669	fi
1670
1671	if [[ ! -f $filename ]]
1672	then
1673	printf "\n +++ source code file: $filename"
1674	printf "\n does not exist"
1675	locat=source; exit
1676	else
1677	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1678	fi
1679
1680	done
1681
1682	cd - > /dev/null
1683
1684	fi
1685
1686
1687	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1688	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1689	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1690	if [[ $restart_run != true ]]
1691	then
1692
1693	if [[ ! -f "$source_path/$mainprog" ]]
1694	then
1695	printf "\n\n +++ main program: $mainprog"
1696	printf "\n does not exist in source directory"
1697	printf "\n \"$source_path\"\n"
1698	locat=source; exit
1699	else
1700	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1701	then
1702	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1703	source_list=${mainprog}" $source_list"
1704	fi
1705	fi
1706	fi
1707
1708
1709	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1710	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1711	if [[ "$restart_run" != true ]]
1712	then
1713	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1714	if [[ ! -f $makefile ]]
1715	then
1716	printf "\n +++ file \"$makefile\" does not exist"
1717	locat=make; exit
1718	else
1719	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1720	fi
1721	fi
1722
1723
1724	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1725	if [[ $restart_run != true && "$add_source_path" != "" ]]
1726	then
1727
1728	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1729	if [[ ! -d $add_source_path ]]
1730	then
1731	printf "\n\n +++ WARNING: additional source code directory"
1732	printf "\n \"$add_source_path\" "
1733	printf "\n does not exist or is not a directory."
1734	printf "\n No source code will be used from this directory!\n"
1735	add_source_path=""
1736	sleep 3
1737	else
1738
1739	cd $add_source_path
1740	found=false
1741
1742	Names=$(ls -1 *.f90 2>&1)
1743	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1744	Names=$(ls -1 *.F90 2>&1)
1745	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1746	Names=$(ls -1 *.F 2>&1)
1747	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1748	Names=$(ls -1 *.f 2>&1)
1749	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1750	Names=$(ls -1 *.c 2>&1)
1751	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1752
1753	cd - > /dev/null
1754	cd SOURCES_FOR_RUN_$fname
1755
1756	# COPY MAKEFILE IF EXISTING
1757	if [[ -f $add_source_path/Makefile ]]
1758	then
1759	printf "\n\n *** user Makefile from directory"
1760	printf "\n \"$add_source_path\" is used \n"
1761	sleep 1
1762	cp $add_source_path/Makefile .
1763	fi
1764
1765	for dateiname in $AddFilenames
1766	do
1767	if [[ -f $dateiname ]]
1768	then
1769	printf "\n +++ source code file \"$dateiname\" found in additional"
1770	printf "\n source code directory \"$add_source_path\" "
1771	printf "\n but was also given with option \"-s\" which means that it should be taken"
1772	printf "\n from directory \"$source_path\"."
1773	locat=source; exit
1774	fi
1775
1776	cp $add_source_path/$dateiname .
1777	source_list="$source_list $dateiname"
1778
1779	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1780	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1781	then
1782	printf "\n\n +++ user file \"$dateiname\" "
1783	printf "\n is not listed in Makefile \n"
1784	locat=source; exit
1785	else
1786
1787	# Default User-Interface von der Liste entfernen, falls Datei
1788	# ein User-Interface enthaelt
1789	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1790	# then
1791	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1792	# then
1793	# rm -rf user_interface.f90
1794	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1795	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1796	# printf "\n since a user-interface is found in file"
1797	# printf "\n \"$add_source_path/$dateiname\" \n"
1798	# sleep 3
1799	# else
1800	if [[ $found = false ]]
1801	then
1802	found=true
1803	printf "\n\n *** following user file(s) added to the"
1804	printf " files to be translated:\n "
1805	fi
1806	printf "$dateiname "
1807	sleep 0.5
1808	fi
1809	done
1810	[[ $found = true ]] && printf "\n"
1811	cd - > /dev/null
1812	fi
1813	fi
1814
1815
1816	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1817	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1818	if [[ $restart_run != true && -n $package_list ]]
1819	then
1820
1821	cd $source_path
1822
1823	for package in $package_list
1824	do
1825
1826	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1827
1828	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1829	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1830	# LIEFERT
1831	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1832
1833
1834	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1835	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1836	for source_list_name in $package_source_list
1837	do
1838	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1839	then
1840
1841	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1842	ending=`echo $source_list_name \| cut -f2 -d.`
1843	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1844	then
1845	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1846	source_list="$source_list $source_list_name"
1847	fi
1848	fi
1849	done
1850	done
1851
1852	cd - > /dev/null
1853	fi
1854
1855
1856	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1857	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1858	# if [[ "$restart_run" != true ]]
1859	# then
1860	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1861	# if [[ ! -f $makefile ]]
1862	# then
1863	# printf "\n +++ file \"$makefile\" does not exist"
1864	# locat=make; exit
1865	# else
1866	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1867	# fi
1868	# fi
1869
1870	fi # do_compile=true
1871
1872
1873	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1874	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1875	if [[ $do_compile = true ]]
1876	then
1877
1878	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1879	# ZUSAMMENSETZEN
1880	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1881	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1882	then
1883	cpp_options="${cpp_options},-D__ibm=__ibm"
1884	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1885	then
1886	cpp_options="$cpp_options -D__nec"
1887	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1888	then
1889	cpp_options="$cpp_options -D__lc"
1890	else
1891	cpp_options="$cpp_options -D__$localhost"
1892	fi
1893
1894	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1895	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1896	then
1897	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1898	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1899	else
1900	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1901	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1902	fi
1903
1904	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1905	if [[ -n $package_list ]]
1906	then
1907	for package in $package_list
1908	do
1909	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1910	then
1911	if [[ $package != "dvrp_graphics+1PE" ]]
1912	then
1913	cpp_options="${cpp_options},-D__$package=__$package"
1914	else
1915	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1916	export use_seperate_pe_for_dvrp_output=true
1917	fi
1918	else
1919	if [[ $package != "dvrp_graphics+1PE" ]]
1920	then
1921	cpp_options="$cpp_options -D__$package"
1922	else
1923	cpp_options="$cpp_options -D__dvrp_graphics"
1924	export use_seperate_pe_for_dvrp_output=true
1925	fi
1926	fi
1927	done
1928	fi
1929
1930	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1931	if [[ -n $cpp_opts ]]
1932	then
1933	for popts in $cpp_opts
1934	do
1935	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1936	then
1937	cpp_options="${cpp_options},-D__$popts=__$popts"
1938	else
1939	cpp_options="$cpp_options -D__$popts"
1940	fi
1941	done
1942	fi
1943
1944	else
1945
1946
1947	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1948	if [[ $do_remote = false ]]
1949	then
1950	if [[ ! -f $executable ]]
1951	then
1952	printf "\n +++ executable file: $executable"
1953	printf "\n does not exist"
1954	locat=executable; exit
1955	fi
1956	fi
1957	fi
1958
1959
1960	# JOBMODUS FESTSTELLEN
1961	if [[ "$ENVIRONMENT" = BATCH ]]
1962	then
1963	jobmo=BATCH
1964	else
1965	jobmo=INTERACTIVE
1966	fi
1967
1968
1969	# no interactive runs on lctit
1970	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1971	then
1972	printf "\n +++ no interactive runs allowed on host \"$host\" "
1973	printf "\n please submit batch job using mrun option \"-b\" \n"
1974	locat=normal; exit
1975	fi
1976
1977
1978	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1979	# DURCH BENUTZER ANDERWEITIG VEREINBART
1980	if [[ "$compiler_name" = "" ]]
1981	then
1982
1983	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1984	locat=compiler_name; exit
1985
1986	fi
1987
1988
1989	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1990	[[ $localhost = necriam ]] && compiler_name=mpif90
1991
1992
1993
1994	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1995	kennung=$RANDOM
1996	if [[ "$tmp_user_catalog" = "" ]]
1997	then
1998	if [[ $localhost = ibmh ]]
1999	then
2000	tmp_user_catalog=$SCRATCH
2001	elif [[ $localhost = nech ]]
2002	then
2003	tmp_user_catalog=$WRKSHR
2004	else
2005	tmp_user_catalog=/tmp
2006	fi
2007	fi
2008	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2009
2010
2011	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2012	# BESTIMMEN
2013	if [[ "$tmp_data_catalog" = "" ]]
2014	then
2015	if [[ $localhost = nech ]]
2016	then
2017	tmp_data_catalog=$WRKSHR/mrun_restart_data
2018	else
2019	tmp_data_catalog=/tmp/mrun_restart_data
2020	fi
2021	fi
2022
2023
2024	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2025	# ERSETZEN
2026	if [[ $do_remote = false && $do_compile = true ]]
2027	then
2028	eval fopts=\"$fopts\"
2029	eval lopts=\"$lopts\"
2030	fi
2031
2032
2033
2034	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2035	fopts="$fopts $netcdf_inc $dvr_inc"
2036	lopts="$lopts $netcdf_lib $dvr_lib"
2037	ROPTS="$ropts"
2038	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2039	then
2040	XOPT="-X $numprocs"
2041	fi
2042
2043
2044
2045	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2046	# GRAMM BENOETIGT
2047	done=false
2048	while [[ $done = false ]]
2049	do
2050	cputime=$cpumax
2051	if (( $cputime == 0 ))
2052	then
2053	if [[ $do_batch = true ]]
2054	then
2055	printf "\n +++ cpu-time is undefined"
2056	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2057	printf "\n >>> "
2058	read cputime 1>/dev/null 2>&1
2059	else
2060	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2061	fi
2062	else
2063	done=true
2064	fi
2065	cpumax=$cputime
2066	done
2067
2068	(( minuten = cputime / 60 ))
2069	(( sekunden = cputime - minuten * 60 ))
2070
2071
2072	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2073	if [[ $do_batch = true ]]
2074	then
2075	done=false
2076	while [[ $done = false ]]
2077	do
2078	if (( memory == 0 ))
2079	then
2080	printf "\n +++ memory demand is undefined"
2081	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2082	printf "\n >>> "
2083	read memory 1>/dev/null 2>&1
2084	else
2085	done=true
2086	fi
2087	done
2088	fi
2089
2090
2091	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2092	if [[ $do_remote = true && -z $remote_username ]]
2093	then
2094	while [[ -z $remote_username ]]
2095	do
2096	printf "\n +++ username on remote host \"$host\" is undefined"
2097	printf "\n >>> Please type username:"
2098	printf "\n >>> "
2099	read remote_username
2100	done
2101	mc="$mc -u$remote_username"
2102	fi
2103
2104
2105	# set module load command and export for subjob
2106	if [[ "$modules" != "" ]]
2107	then
2108	if [[ $host = lctit ]]
2109	then
2110	export module_calls=". $modules"
2111	else
2112	export module_calls="module load ${modules};"
2113	fi
2114	fi
2115
2116	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2117	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2118	then
2119	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2120	then
2121	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2122	fi
2123	if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2124	then
2125	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2126	echo "*** module_calls = $module_calls"
2127	fi
2128	fi
2129
2130
2131	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2132	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2133	then
2134	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2135	then
2136	mpilib=mpt
2137	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2138	then
2139	mpilib=mvapich
2140	fi
2141	fi
2142
2143
2144
2145	###########################################################################
2146	# HEADER-AUSGABE
2147	###########################################################################
2148
2149
2150	calltime=$(date)
2151	printf "\n"
2152	# [[ $silent = false ]] && clear
2153	printf "#--------------------------------------------------------------# \n"
2154	printf "\| $version$calltime \| \n"
2155	printf "\| \| \n"
2156	spalte1="called on:"; spalte2=$localhost_realname
2157	printf "\| $spalte1$spalte2 \| \n"
2158	if [[ $local_compile = false ]]
2159	then
2160	if [[ $do_remote = true ]]
2161	then
2162	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2163	else
2164	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2165	fi
2166	else
2167	spalte1="compiling test only!"; spalte2=""
2168	fi
2169	printf "\| $spalte1$spalte2 \| \n"
2170	if [[ -n $numprocs ]]
2171	then
2172	spalte1="number of PEs:"; spalte2=$numprocs
2173	printf "\| $spalte1$spalte2 \| \n"
2174	fi
2175	if [[ -n $tasks_per_node ]]
2176	then
2177	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2178	printf "\| $spalte1$spalte2 \| \n"
2179	fi
2180	if [[ $use_openmp = true ]]
2181	then
2182	spalte1="threads per task:"; spalte2="$threads_per_task"
2183	printf "\| $spalte1$spalte2 \| \n"
2184	fi
2185	printf "\| \| \n"
2186	if [[ $do_compile = true ]]
2187	then
2188	if [[ "$mopts" != "" ]]
2189	then
2190	spalte1="make options:"; spalte2=$mopts
2191	printf "\| $spalte1$spalte2 \| \n"
2192	zeile=$(echo "$mopts" \| cut -c41-)
2193	while [[ "$zeile" != "" ]]
2194	do
2195	spalte1=""
2196	spalte2=$zeile
2197	printf "\| $spalte1$spalte2 \| \n"
2198	zeile=$(echo "$zeile" \| cut -c41-)
2199	done
2200	fi
2201
2202	spalte1="cpp directives:"; spalte2=$cpp_options
2203	printf "\| $spalte1$spalte2 \| \n"
2204	zeile=$(echo "$cpp_options" \| cut -c41-)
2205	while [[ "$zeile" != "" ]]
2206	do
2207	spalte1=""
2208	spalte2=$zeile
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$zeile" \| cut -c41-)
2211	done
2212
2213	spalte1="compiler options:"; spalte2="$fopts"
2214	printf "\| $spalte1$spalte2 \| \n"
2215	zeile=$(echo "$fopts" \| cut -c41-)
2216	while [[ "$zeile" != "" ]]
2217	do
2218	spalte1=""
2219	spalte2=$zeile
2220	printf "\| $spalte1$spalte2 \| \n"
2221	zeile=$(echo "$zeile" \| cut -c41-)
2222	done
2223
2224	spalte1="linker options:"; spalte2=$lopts
2225	printf "\| $spalte1$spalte2 \| \n"
2226	zeile=$(echo "$lopts" \| cut -c41-)
2227	while [[ "$zeile" != "" ]]
2228	do
2229	spalte1=""
2230	spalte2=$zeile
2231	printf "\| $spalte1$spalte2 \| \n"
2232	zeile=$(echo "$zeile" \| cut -c41-)
2233	done
2234
2235	spalte1="modules to be load:"; spalte2=$modules
2236	printf "\| $spalte1$spalte2 \| \n"
2237	zeile=$(echo "$modules" \| cut -c41-)
2238	while [[ "$zeile" != "" ]]
2239	do
2240	spalte1=""
2241	spalte2=$zeile
2242	printf "\| $spalte1$spalte2 \| \n"
2243	zeile=$(echo "$zeile" \| cut -c41-)
2244	done
2245
2246	spalte1="main program":; spalte2=$mainprog
2247	printf "\| $spalte1$spalte2 \| \n"
2248	else
2249	spalte1=executable:; spalte2=$executable
2250	printf "\| $spalte1$spalte2 \| \n"
2251	fi
2252	printf "\| \| \n"
2253	spalte1="base name of files":; spalte2=$fname
2254	printf "\| $spalte1$spalte2 \| \n"
2255	if [[ $fname != $afname ]]
2256	then
2257	spalte1="base name of input files":; spalte2=$afname
2258	printf "\| $spalte1$spalte2 \| \n"
2259	fi
2260	spalte1="INPUT control list":; spalte2=$input_list
2261	printf "\| $spalte1$spalte2 \| \n"
2262	spalte1="OUTPUT control list":; spalte2=$output_list
2263	printf "\| $spalte1$spalte2 \| \n"
2264
2265	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2266	then
2267	spalte1="memory demand / PE":; spalte2="$memory MB"
2268	printf "\| $spalte1$spalte2 \| \n"
2269	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2270	printf "\| $spalte1$spalte2 \| \n"
2271	fi
2272
2273	if [[ $do_compile = true ]]
2274	then
2275	printf "\| \| \n"
2276	printf "\| Files to be compiled: \| \n"
2277	zeile=$source_list
2278	while [[ "$zeile" != "" ]]
2279	do
2280	spalte3=$zeile
2281	printf "\| $spalte3 \| \n"
2282	zeile=$(echo "$zeile" \| cut -c61-)
2283	done
2284	fi
2285	printf "#--------------------------------------------------------------#"
2286
2287
2288
2289	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2290	if [[ $do_trace = true ]]
2291	then
2292	(( i = 0 ))
2293	while (( i < iin ))
2294	do
2295	(( i = i + 1 ))
2296	if (( i == 1 ))
2297	then
2298	printf "\n\n >>> INPUT-file assignments:\n"
2299	fi
2300	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2301	done
2302	(( i = 0 ))
2303	while (( i < iout ))
2304	do
2305	(( i = i + 1 ))
2306	if (( i == 1 ))
2307	then
2308	printf "\n\n >>> OUTPUT-file assignments:\n"
2309	fi
2310	printf "\n ${localout[$i]} : ${pathout[$i]}"
2311	done
2312	(( i = 0 ))
2313	while (( i < iic ))
2314	do
2315	(( i = i + 1 ))
2316	if (( i == 1 ))
2317	then
2318	printf "\n\n >>> INPUT-commands:\n"
2319	fi
2320	printf "\n ${in_command[$i]}"
2321	done
2322	(( i = 0 ))
2323	while (( i < ioc ))
2324	do
2325	(( i = i + 1 ))
2326	if (( i == 1 ))
2327	then
2328	printf "\n\n >>> OUTPUT-commands:\n"
2329	fi
2330	printf "\n ${out_command[$i]}"
2331	done
2332	fi
2333
2334
2335	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2336	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2337	then
2338	antwort=dummy
2339	printf "\n\n"
2340	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2341	do
2342	printf " >>> everything o.k. (y/n) ? "
2343	read antwort
2344	done
2345	if [[ $antwort = n \|\| $antwort = N ]]
2346	then
2347	locat=user_abort; (( iec = 0 )); exit
2348	fi
2349	if [[ $do_batch = true ]]
2350	then
2351	printf " >>> batch-job will be created and submitted"
2352	else
2353	if [[ $local_compile = false ]]
2354	then
2355	printf " >>> MRUN will now continue to execute on this machine"
2356	else
2357	printf " >>> a test compilation will now be carried out on this machine"
2358	fi
2359	fi
2360	fi
2361
2362
2363
2364
2365	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2366	# CHENDE AKTIONEN DURCHGEFUEHRT
2367	if [[ $do_batch = false ]]
2368	then
2369
2370
2371	# TEMPORAEREN KATALOG ERZEUGEN
2372	mkdir -p $TEMPDIR
2373	chmod go+rx $TEMPDIR
2374	tmpcreate=true
2375
2376	# set striping on lustre file system
2377	# if [[ $localhost = lcsgih ]]
2378	# then
2379	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2380	# lfs getstripe $TEMPDIR
2381	# fi
2382
2383
2384	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2385	# TEMPORAERES VERZEICHNIS KOPIEREN
2386	if [[ $do_compile = true ]]
2387	then
2388
2389	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2390	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2391	if [[ $localhost = nech ]]
2392	then
2393	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2394	if mkdir -p $TEMPDIR_COMPILE
2395	then
2396	printf "\n *** \"$TEMPDIR_COMPILE\" "
2397	printf "\n is generated as temporary directory for cross compiling\n"
2398	else
2399	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2400	printf "\n needed for cross compilation failed"
2401	locat=compile
2402	exit
2403	fi
2404	else
2405	TEMPDIR_COMPILE=$TEMPDIR
2406	fi
2407
2408
2409	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2410	line=""
2411	grep "%depository_path" $config_file > tmp_mrun
2412	while read line
2413	do
2414	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2415	then
2416	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2417	then
2418	global_depository_path=`echo $line \| cut -d" " -s -f2`
2419	fi
2420	fi
2421	done < tmp_mrun
2422
2423	line=""
2424	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2425	while read line
2426	do
2427	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2428	then
2429	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2430	then
2431	local_depository_path=`echo $line \| cut -d" " -s -f2`
2432	fi
2433	fi
2434	done < tmp_mrun
2435
2436	if [[ "$local_depository_path" = "" ]]
2437	then
2438	if [[ "$global_depository_path" != "" ]]
2439	then
2440	local_depository_path=$global_depository_path
2441	else
2442	printf "\n\n +++ no depository path found in configuration file"
2443	printf "\n for local host \"$localhost\" "
2444	printf "\n please set \"\%depository_path\" in configuration file\n"
2445	locat=config_file; exit
2446	fi
2447	fi
2448	eval local_depository_path=$local_depository_path
2449	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2450	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2451
2452
2453	basename=`print $mainprog \| cut -f1 -d"."`
2454	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2455	if [[ ! -f $make_depository ]]
2456	then
2457	printf "\n"
2458	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2459	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2460	else
2461	cp $make_depository $TEMPDIR_COMPILE
2462	cd $TEMPDIR_COMPILE
2463	tar -xf $make_depository > /dev/null 2>&1
2464	cd - > /dev/null
2465	fi
2466
2467	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2468
2469	else
2470
2471	cp $executable ${TEMPDIR}/a.out
2472
2473	fi
2474
2475
2476	# WECHSEL IN TEMPORAEREN KATALOG
2477	cd $TEMPDIR
2478	printf "\n *** changed to temporary directory: $TEMPDIR"
2479
2480
2481	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2482	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2483	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2484	# ERMITTELN
2485	(( i = 0 ))
2486	while (( i < iout ))
2487	do
2488	(( i = i + 1 ))
2489	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2490	then
2491	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2492	else
2493	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2494	fi
2495	done
2496
2497
2498	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2499	if [[ $do_compile = true ]]
2500	then
2501
2502
2503	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2504	printf "\n\n\n *** compilation starts \n$striche\n"
2505	printf " *** compilation with make using following options:\n"
2506	printf " make depository: $make_depository"
2507	if [[ "$mopts" != "" ]]
2508	then
2509	printf " make options: $mopts\n"
2510	fi
2511	printf " compilername: $compiler_name\n"
2512	printf " compiler options: $fopts\n"
2513	printf " preprocessor directives: $cpp_options \n"
2514	printf " linker options: $lopts \n"
2515	if [[ "$modules" != "" ]]
2516	then
2517	printf " modules to be load: $modules \n"
2518	fi
2519	printf " source code files: $source_list \n"
2520
2521	if [[ $localhost = nech ]]
2522	then
2523	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2524	cp $TEMPDIR_COMPILE/a.out .
2525	[[ $? != 0 ]] && compile_error=true
2526	rm -rf $TEMPDIR_COMPILE
2527	elif [[ $localhost = ibmh ]]
2528	then
2529	printf " compiler is called via ssh on \"plogin1\" \n"
2530	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2531	[[ ! -f a.out ]] && compile_error=true
2532	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2533	elif [[ $localhost = lcsgib ]]
2534	then
2535	printf " compiler is called via ssh on \"bicegate0\" \n"
2536	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2537	[[ ! -f a.out ]] && compile_error=true
2538	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2539	elif [[ $localhost = lcsgih ]]
2540	then
2541	printf " compiler is called via ssh on \"hicegate0\" \n"
2542	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2543	[[ ! -f a.out ]] && compile_error=true
2544	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2545	else
2546	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2547	[[ "$module_calls" != "" ]] && eval $module_calls
2548	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2549	fi
2550
2551	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2552	then
2553	printf "\n +++ error occured while compiling or linking"
2554	locat=compile
2555
2556	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2557	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2558	# then
2559	exit
2560	# else
2561	# locat=normal
2562	# fi
2563	else
2564	printf "$striche\n *** compilation finished \n"
2565	fi
2566	fi
2567
2568
2569	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2570	if [[ $local_compile = true ]]
2571	then
2572	cd $HOME
2573	rm -rf $TEMPDIR
2574	locat=local_compile; exit
2575	fi
2576
2577
2578	# BEREITSTELLEN DER INPUT-DATEIEN
2579	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2580	(( i = 0 ))
2581	while (( i < iin ))
2582	do
2583	(( i = i + 1 ))
2584	if (( i == 1 ))
2585	then
2586	printf "\n\n *** providing INPUT-files:\n$striche"
2587	fi
2588
2589
2590	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2591	if [[ "${transin[$i]}" = unavailable ]]
2592	then
2593	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2594	then
2595	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2596	printf "\n is not available!"
2597	else
2598	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2599	printf "\n is not available!"
2600	fi
2601	continue
2602	fi
2603
2604	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2605	files_for_pes=false; datentyp=file
2606	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2607	then
2608	files_for_pes=true; datentyp=directory
2609	actionin[$i]=""
2610	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2611	then
2612	actionin[$i]=""
2613	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2614	then
2615	files_for_pes=true; datentyp=directory
2616	actionin[$i]="ar"
2617	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2618	then
2619	actionin[$i]="ar"
2620	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2621	then
2622	files_for_pes=true; datentyp=directory
2623	actionin[$i]="fl"
2624	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2625	then
2626	actionin[$i]="fl"
2627	fi
2628
2629	if [[ $files_for_pes = true ]]
2630	then
2631	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2632	else
2633	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2634	fi
2635
2636	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2637	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2638	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2639	# SERVER ZU HOLEN
2640	if [[ "${actionin[$i]}" = fl ]]
2641	then
2642	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2643	if [[ $files_for_pes = false ]]
2644	then
2645	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2646	then
2647	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2648	got_tmp[$i]=true
2649	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2650	then
2651	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2652	printf "\n *** trying to use backup copy in \"$WORK\" "
2653	cp $WORK/${frelin[$i]} ${localin[$i]}
2654	else
2655	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2656	printf "\n or \"$tmp_data_catalog\" does not exist!"
2657	printf "\n *** trying to get copy from archive"
2658	actionin[$i]=ar
2659	fi
2660	else
2661	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2662	then
2663	mkdir ${localin[$i]}
2664	cd $tmp_data_catalog/${frelin[$i]}
2665	for file in $(ls *)
2666	do
2667	ln $file $TEMPDIR/${localin[$i]}
2668	done
2669	cd $TEMPDIR
2670	got_tmp[$i]=true
2671	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2672	then
2673	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2674	printf "\n *** trying to use backup copy in \"$WORK\" "
2675	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2676	else
2677	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2678	printf "\n or \"$tmp_data_catalog\" does not exist!"
2679	printf "\n *** trying to get copy from archive"
2680	actionin[$i]=ar
2681	fi
2682	fi
2683	fi
2684
2685
2686	# DATEI LIEGT AUF ARCHIV-SERVER
2687	if [[ "${actionin[$i]}" = ar ]]
2688	then
2689
2690	if [[ $files_for_pes = false ]]
2691	then
2692	printf "\n file will be restored from archive-system ($archive_system)!"
2693	else
2694	printf "\n directory will be restored from archive-system ($archive_system)!"
2695	fi
2696
2697	file_restored=false
2698
2699	if [[ $archive_system = asterix ]]
2700	then
2701	do_stagein=true
2702	(( stagein_anz = 0 ))
2703	while [[ $do_stagein = true ]]
2704	do
2705	if [[ $files_for_pes = false ]]
2706	then
2707	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2708	else
2709	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2710	fi
2711	cat STAGEIN_OUTPUT
2712	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2713	then
2714	file_restored=true
2715	do_stagein=false
2716	else
2717	(( stagein_anz = stagein_anz + 1 ))
2718	if (( stagein_anz == 10 ))
2719	then
2720	printf "\n +++ stagein stoped after 10 tries"
2721	locat=stage
2722	exit
2723	fi
2724	printf "\n +++ restoring from archive failed, trying again:"
2725	sleep 900
2726	fi
2727	done
2728	elif [[ $archive_system = DMF ]]
2729	then
2730	if [[ $files_for_pes = false ]]
2731	then
2732	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2733	locat=DMF
2734	exit
2735	else
2736	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2737	cp -r $ARCHIVE/${frelin[$i]} $PWD
2738	file_restored=true
2739	fi
2740	elif [[ $archive_system = tivoli ]]
2741	then
2742	if [[ $files_for_pes = false ]]
2743	then
2744	if [[ $localhost = lcsgih ]]
2745	then
2746	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2747	else
2748	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2749	fi
2750	else
2751	(( inode = 0 ))
2752	while (( inode < nodes ))
2753	do
2754	if [[ $localhost = lcsgih ]]
2755	then
2756	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2757	else
2758	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2759	fi
2760	(( inode = inode + 1 ))
2761	done
2762	fi
2763	file_restored=true
2764	elif [[ $archive_system = ut ]]
2765	then
2766	if [[ $files_for_pes = false ]]
2767	then
2768	cp $UT/${frelin[$i]} .
2769	else
2770	(( inode = 0 ))
2771	while (( inode < nodes ))
2772	do
2773	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2774	(( inode = inode + 1 ))
2775	done
2776	fi
2777	file_restored=true
2778	else
2779	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2780	locat=rearchive
2781	exit
2782	fi
2783
2784	if [[ $file_restored = true ]]
2785	then
2786
2787	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2788	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2789	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2790	if [[ $files_for_pes = false ]]
2791	then
2792	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2793	else
2794	mkdir $tmp_data_catalog/${frelin[$i]}
2795	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2796	fi
2797	got_tmp[$i]=true
2798
2799	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2800	mv ${frelin[$i]} ${localin[$i]}
2801
2802	fi
2803	fi
2804
2805
2806	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2807	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2808	then
2809
2810	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2811	then
2812
2813	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2814	printf "\n file will be provided for $numprocs processors"
2815	mkdir ${localin[$i]}
2816	ival=$numprocs
2817	(( ii = 0 ))
2818	while (( ii <= ival-1 ))
2819	do
2820	if (( ii < 10 ))
2821	then
2822	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2823	elif (( ii < 100 ))
2824	then
2825	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2826	elif (( ii < 1000 ))
2827	then
2828	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2829	else
2830	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2831	fi
2832	(( ii = ii + 1 ))
2833	done
2834
2835	else
2836
2837	if [[ $files_for_pes = true ]]
2838	then
2839
2840	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2841	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2842	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2843	# PER MOVE UMBENANNT WERDEN
2844	printf "\n providing $numprocs files for the respective processors"
2845	mkdir ${localin[$i]}
2846	if [[ $link_local_input = true ]]
2847	then
2848	printf " using ln -f\n"
2849	cd ${absnamein[$i]}
2850	for file in $(ls *)
2851	do
2852	ln -f $file ${localin[$i]}
2853	done
2854	cd $TEMPDIR
2855	fi
2856	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2857	if [[ ! -f "${localin[$i]}/_0000" ]]
2858	then
2859	if [[ $link_local_input = true ]]
2860	then
2861	printf " ln failed for .../_0000, using cp...\n"
2862	fi
2863	cp -r ${absnamein[$i]}/* ${localin[$i]}
2864	fi
2865
2866	else
2867	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2868	if [[ $link_local_input = true ]]
2869	then
2870	printf " using ln -f\n"
2871	ln -f ${absnamein[$i]} ${localin[$i]}
2872	fi
2873	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2874	if [[ ! -f "${localin[$i]}" ]]
2875	then
2876	if [[ $link_local_input = true ]]
2877	then
2878	printf " ln failed, using cp...\n"
2879	fi
2880	cp ${absnamein[$i]} ${localin[$i]}
2881	fi
2882	fi
2883	fi
2884	fi
2885
2886	done
2887	if (( i != 0 ))
2888	then
2889	printf "\n$striche\n *** all INPUT-files provided \n"
2890	fi
2891
2892
2893	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2894	(( i = 0 ))
2895	while (( i < iic ))
2896	do
2897	(( i = i + 1 ))
2898	if (( i == 1 ))
2899	then
2900	printf "\n\n *** execution of INPUT-commands:\n$striche"
2901	fi
2902	printf "\n >>> ${in_command[$i]}"
2903	eval ${in_command[$i]}
2904	if (( i == iic ))
2905	then
2906	printf "\n$striche\n"
2907	fi
2908	done
2909
2910
2911	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2912	cpurest=${cpumax}.
2913
2914
2915	# START DVR STREAMING SERVER
2916	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2917	then
2918	if [[ "$dvr_server" != "" ]]
2919	then
2920
2921	printf "\n\n *** preparing the dvr streaming server configuration file"
2922
2923	# Check, if a dvr server is already running
2924	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2925	if [[ "$running_dvrserver_id" != "" ]]
2926	then
2927
2928	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2929	printf "\n This server is used instead starting a new one!"
2930	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2931
2932	else
2933
2934	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2935	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2936	then
2937	cp ${PALM_BIN}/.dvrserver.config .
2938
2939	# Entering the BASEDIR, UID and GID into this file
2940	user_id=`id -u`
2941	group_id=`id -g`
2942	# & is needed as seperator, because TEMPDIR contains /
2943	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2944	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2945	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2946	mv .dvrserver.3 .dvrserver.config
2947	rm .dvrserver.1 .dvrserver.2
2948
2949	# Start dvr server in background, get his id and print on terminal
2950	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2951	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2952	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2953	local_dvrserver_running=.TRUE.
2954	else
2955	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2956	printf "\n \"$PALM_BIN\" "
2957	locat=dvr
2958	exit
2959	fi
2960
2961	fi
2962
2963	else
2964	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2965	fi
2966	fi
2967
2968
2969	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2970	# LESEN VON PALM)
2971	cat > ENVPAR << %%END%%
2972	&envpar run_identifier = '$fname', host = '$localhost',
2973	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2974	maximum_cpu_time_allowed = ${cpumax}.,
2975	revision = '$global_revision',
2976	local_dvrserver_running = $local_dvrserver_running /
2977
2978	%%END%%
2979
2980
2981	# PROGRAMMSTART
2982	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2983	PATH=$PATH:$TEMPDIR
2984
2985	# MPI debug option (argument checking, slows down execution due to increased latency)
2986	if [[ "$mpi_debug" = true ]]
2987	then
2988	export MPI_CHECK_ARGS=1
2989	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2990	fi
2991
2992	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2993	then
2994	if [[ "$ENVIRONMENT" = BATCH ]]
2995	then
2996	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2997	then
2998	printf "\n +++ debug is allowed in interactive mode only"
2999	locat=debug
3000	exit
3001	fi
3002	fi
3003	if [[ $localhost = decalpha ]]
3004	then
3005	dxladebug a.out
3006	elif [[ $localhost = ibmh ]]
3007	then
3008
3009	# SETUP THE IBM MPI ENVIRONMENT
3010	export MP_SHARED_MEMORY=yes
3011	export AIXTHREADS_SCOPE=S
3012	export OMP_NUM_THREADS=$threads_per_task
3013	export AUTHSTATE=files
3014	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3015
3016	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3017	export MP_ADAPTER_USE=shared
3018	export MP_CPU_USE=multiple
3019	export MP_TIMEOUT=1200
3020
3021	unset MP_TASK_AFFINITY
3022
3023	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3024	#(( ii = 1 ))
3025	#while (( ii <= $numprocs ))
3026	#do
3027	# echo $localhost_realname >> hostfile
3028	# (( ii = ii + 1 ))
3029	#done
3030	#export MP_HOSTFILE=hostfile
3031
3032	if [[ "$LOADLBATCH" = yes ]]
3033	then
3034	totalview poe a.out $ROPTS
3035	else
3036	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3037	export TVDSVRLAUNCHCMD=ssh
3038	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3039	fi
3040	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3041	then
3042	# CURRENTLY NO DEBUGGER ON LCSGI
3043	if [[ $run_coupled_model = true ]]
3044	then
3045	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3046	locat=debug
3047	exit
3048	else
3049	echo "no_coupling" > runfile_atmos
3050	fi
3051	(( ii = $numprocs / $threads_per_task ))
3052	export OMP_NUM_THREADS=$threads_per_task
3053	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3054	if [[ $threads_per_task != 1 ]]
3055	then
3056	printf "\n threads per task: $threads_per_task"
3057	fi
3058	printf "\n\n"
3059	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3060	then
3061	# export MPI_LAUNCH_TIMEOUT=360
3062	if [[ "$totalview" = true ]]
3063	then
3064	printf "\n running totalview debugger"
3065	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3066	else
3067	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3068	fi
3069	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3070	then
3071	# ulimit -s 300000 # A too large stack size causes problems
3072	# export MV2_NUM_PORTS=2
3073	# export MV2_CPU_MAPPING=0:1:2:3
3074	if [[ "$totalview" = true ]]
3075	then
3076	printf "\n running totalview debugger"
3077	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3078	else
3079	mpiexec ./a.out $ROPTS < runfile_atmos
3080	fi
3081	fi
3082	else
3083	printf "\n +++ no debug available on \"$localhost\" "
3084	printf "\n or not implemented in mrun so far"
3085	locat=debug
3086	exit
3087	fi
3088
3089	# end debug mode
3090	else
3091
3092	# normal execution
3093	if [[ -n $numprocs ]]
3094	then
3095	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3096	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3097	then
3098	# SETUP THE IBM MPI ENVIRONMENT
3099	if [[ $host != ibmh ]]
3100	then
3101	export MP_SHARED_MEMORY=yes
3102	export AIXTHREAD_SCOPE=S
3103	export OMP_NUM_THREADS=$threads_per_task
3104	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3105	export AUTHSTATE=files
3106	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3107	# export MP_PRINTENV=yes
3108
3109	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3110	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3111	export MP_WAIT_MODE=poll
3112	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3113	fi
3114	if [[ "$LOADLBATCH" = yes ]]
3115	then
3116	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3117	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3118	then
3119	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3120	else
3121	if [[ $run_coupled_model = false ]]
3122	then
3123	if [[ "$ocean_file_appendix" = true ]]
3124	then
3125	echo "precursor_ocean" > runfile_atmos
3126	else
3127	echo "precursor_atmos" > runfile_atmos
3128	fi
3129	else
3130	(( iia = $numprocs_atmos / $threads_per_task ))
3131	(( iio = $numprocs_ocean / $threads_per_task ))
3132	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3133	printf "\n using $coupled_mode coupling"
3134	printf "\n\n"
3135	echo "coupled_run $iia $iio" > runfile_atmos
3136	fi
3137	poe ./a.out $ROPTS < runfile_atmos
3138	fi
3139	else
3140	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3141	then
3142	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3143	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3144	then
3145	if [[ -f $hostfile ]]
3146	then
3147	cp $hostfile hostfile
3148	else
3149	(( ii = 1 ))
3150	while (( ii <= $numprocs ))
3151	do
3152	echo $localhost_realname >> hostfile
3153	(( ii = ii + 1 ))
3154	done
3155	fi
3156	export MP_HOSTFILE=hostfile
3157	if [[ $run_coupled_model = false ]]
3158	then
3159	if [[ "$ocean_file_appendix" = true ]]
3160	then
3161	echo "precursor_ocean" > runfile_atmos
3162	else
3163	echo "precursor_atmos" > runfile_atmos
3164	fi
3165	else
3166	(( iia = $numprocs_atmos / $threads_per_task ))
3167	(( iio = $numprocs_ocean / $threads_per_task ))
3168	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3169	printf "\n using $coupled_mode coupling"
3170	printf "\n\n"
3171	echo "coupled_run $iia $iio" > runfile_atmos
3172	fi
3173	if [[ $localhost = ibmy ]]
3174	then
3175	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3176	else
3177	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3178	fi
3179
3180	else
3181	if [[ "$host_file" = "" ]]
3182	then
3183	printf "\n +++ no hostfile given in configuration file"
3184	locat=config_file
3185	exit
3186	else
3187	eval host_file=$host_file
3188	fi
3189	export MP_HOSTFILE=$host_file
3190	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3191	fi
3192	fi
3193	elif [[ $host = nech \|\| $host = necriam ]]
3194	then
3195	(( ii = nodes ))
3196	if [[ $ii = 1 ]]
3197	then
3198	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3199	export MPIPROGINF=YES
3200	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3201	echo "*** execution on single node with mpirun"
3202	mpirun -np $numprocs ./a.out $ROPTS
3203	else
3204	(( i = 0 ))
3205	while (( i < ii ))
3206	do
3207	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3208	(( i = i + 1 ))
3209	done
3210
3211	echo "#!/bin/sh" > mpi_exec_shell
3212	echo " " >> mpi_exec_shell
3213	echo "set -u" >> mpi_exec_shell
3214	echo "F_ERRCNT=0" >> mpi_exec_shell
3215	echo "MPIPROGINV=YES" >> mpi_exec_shell
3216	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3217	echo "cpurest=$cpurest" >> mpi_exec_shell
3218	echo "fname=$fname" >> mpi_exec_shell
3219	echo "localhost=$localhost" >> mpi_exec_shell
3220	echo "return_addres=$return_addres" >> mpi_exec_shell
3221	echo "return_username=$return_username" >> mpi_exec_shell
3222	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3223	echo "write_binary=$write_binary" >> mpi_exec_shell
3224	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3225	echo " " >> mpi_exec_shell
3226	echo "export F_ERRCNT" >> mpi_exec_shell
3227	echo "export MPIPROGINV" >> mpi_exec_shell
3228	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3229	echo "export cpurest" >> mpi_exec_shell
3230	echo "export fname" >> mpi_exec_shell
3231	echo "export localhost" >> mpi_exec_shell
3232	echo "export return_addres" >> mpi_exec_shell
3233	echo "export return_username" >> mpi_exec_shell
3234	echo "export tasks_per_node" >> mpi_exec_shell
3235	echo "export write_binary" >> mpi_exec_shell
3236	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3237	echo " " >> mpi_exec_shell
3238	echo "exec ./a.out" >> mpi_exec_shell
3239
3240	chmod u+x mpi_exec_shell
3241	export MPIPROGINF=YES
3242	mpirun -f multinode_config &
3243	wait
3244
3245	fi
3246	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3247	then
3248
3249	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3250	# DOES NOT EXIST
3251	if [[ $host != lcsgih && $host != lcsgib ]]
3252	then
3253	if [[ -f $hostfile ]]
3254	then
3255	cp $hostfile hostfile
3256	else
3257	(( ii = 1 ))
3258	while (( ii <= $numprocs / $threads_per_task ))
3259	do
3260	echo $localhost_realname >> hostfile
3261	(( ii = ii + 1 ))
3262	done
3263	fi
3264	eval zeile=\"`head -n $ii hostfile`\"
3265	printf "\n *** running on: $zeile"
3266	fi
3267
3268	(( ii = $numprocs / $threads_per_task ))
3269	export OMP_NUM_THREADS=$threads_per_task
3270	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3271	if [[ $threads_per_task != 1 ]]
3272	then
3273	# increase stack size to unlimited, because large runs
3274	# may abort otherwise
3275	ulimit -Ss unlimited
3276	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3277	fi
3278	if [[ $run_coupled_model = false ]]
3279	then
3280	if [[ "$ocean_file_appendix" = true ]]
3281	then
3282	echo "precursor_ocean" > runfile_atmos
3283	else
3284	echo "precursor_atmos" > runfile_atmos
3285	fi
3286	printf "\n\n"
3287	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3288	then
3289	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3290	then
3291	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3292	# export MPI_DSM_DISTRIBUTE=1
3293	# MPI_DSM_CPULIST: pin MPI processes to cores
3294	if [[ $use_openmp = false ]]
3295	then
3296	if [[ "$sgi_feature" = ice2 ]]
3297	then
3298	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3299	else
3300	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3301	fi
3302	else
3303	unset MPI_DSM_CPULIST
3304	fi
3305	# MPI_IB_RAILS: use both IB rails on ICE2
3306	export MPI_BUFS_PER_HOST=512
3307	export MPI_IB_RAILS=2
3308	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3309	export MPI_CONNECTIONS_THRESHOLD=8192
3310	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3311	export MPI_TYPE_DEPTH=20
3312	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3313	export MPI_GROUP_MAX=64
3314	echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3315	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3316
3317	# next is test for openmp usage
3318	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3319	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3320	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3321	then
3322	export MV2_NUM_PORTS=2
3323	# The default setting of MV2_CPU_MAPPING gives best results
3324	# export MV2_ENABLE_AFFINITY=1
3325	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3326	# if [[ "$sgi_feature" = ice2 ]]
3327	# then
3328	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3329	# else
3330	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3331	# fi
3332	if [[ $use_openmp = true ]]
3333	then
3334	unset MV2_CPU_MAPPING
3335	export MV2_ENABLE_AFFINITY=0
3336	fi
3337	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3338	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3339	if [[ $use_openmp = true ]]
3340	then
3341	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3342	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3343	else
3344	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3345	fi
3346	fi
3347	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3348	then
3349	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3350	else
3351	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3352	fi
3353	else
3354
3355	# currently there is no full MPI-2 support on ICE and XT4
3356	(( iia = $numprocs_atmos / $threads_per_task ))
3357	(( iio = $numprocs_ocean / $threads_per_task ))
3358	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3359	printf "\n using $coupled_mode coupling"
3360	printf "\n\n"
3361
3362	if [[ $coupled_mode = "mpi2" ]]
3363	then
3364	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3365	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3366	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3367	then
3368
3369	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3370	then
3371	# export MPI_LAUNCH_TIMEOUT=360
3372	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3373	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3374	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3375	then
3376	# ulimit -s 300000 # A too large stack size causes problems
3377	# export MV2_NUM_PORTS=2
3378	# export MV2_CPU_MAPPING=0:1:2:3
3379	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3380	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3381	fi
3382
3383	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3384	then
3385
3386	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3387	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3388
3389	else
3390	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3391	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3392	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3393	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3394	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3395	fi
3396	wait
3397
3398	else
3399
3400	echo "coupled_run $iia $iio" > runfile_atmos
3401	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3402	then
3403
3404	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3405	then
3406	# export MPI_LAUNCH_TIMEOUT=360
3407	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3408	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3409	then
3410	# ulimit -s 300000 # A too large stack size causes problems
3411	# export MV2_NUM_PORTS=2
3412	# export MV2_CPU_MAPPING=0:1:2:3
3413	mpiexec ./a.out $ROPTS < runfile_atmos
3414	fi
3415
3416	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3417	then
3418
3419	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3420
3421	elif [[ $host = lck ]]
3422	then
3423	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3424	fi
3425	wait
3426	fi
3427
3428	fi
3429	elif [[ $host = decalpha ]]
3430	then
3431	dmpirun -np $numprocs a.out $ROPTS
3432	elif [[ $host = lckyoto ]]
3433	then
3434	set -xv
3435	export P4_RSHCOMMAND=plesh
3436	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3437	if [[ "$ENVIRONMENT" = BATCH ]]
3438	then
3439	if [[ "$cond2" = fujitsu ]]
3440	then
3441	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3442	elif [[ "cond2" = pgi ]]
3443	then
3444	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3445	else
3446	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3447	fi
3448	else
3449	if [[ "$cond2" = "" ]]
3450	then
3451	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3452	else
3453	mpirun -np $numprocs ./a.out $ROPTS
3454	fi
3455	fi
3456	set +xv
3457	elif [[ $host = lctit ]]
3458	then
3459	export OMP_NUM_THREADS=$threads_per_task
3460	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3461	if [[ "$threads_per_task" != 1 ]]
3462	then
3463	export MV2_ENABLE_AFFINITY=0
3464	fi
3465	echo "----- PBS_NODEFILE content:"
3466	cat $PBS_NODEFILE
3467	echo "-----"
3468	(( ii = $numprocs / $threads_per_task ))
3469	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3470	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3471	else
3472	mpprun -n $numprocs a.out $ROPTS
3473	fi
3474	[[ $? != 0 ]] && execution_error=true
3475
3476
3477	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3478	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3479	then
3480	apprentice
3481	fi
3482	else
3483	a.out $ROPTS
3484	fi
3485	fi
3486	if [[ $? != 0 \|\| $execution_error = true ]]
3487	then
3488
3489	# ABBRUCH BEI LAUFZEITFEHLER
3490	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3491	printf "\n +++ runtime error occured"
3492	locat=execution
3493	exit
3494	else
3495	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3496	printf "\n$striche\n *** execution finished \n"
3497
3498	# Stop the dvr streaming server and process the dvr output in order
3499	# to create dvrs- and html-files containing all streams
3500	if [[ "$dvrserver_id" != "" ]]
3501	then
3502	kill $dvrserver_id
3503	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3504
3505	# If there is a directory, data have been output by the
3506	# streaming server. Otherwise, user has chosen dvrp_output=local
3507	if [[ -d DATA_DVR ]]
3508	then
3509
3510	# Add the current dvr configuration file to the dvr output
3511	# directory
3512	cp .dvrserver.config DATA_DVR
3513
3514	# Process the dvr output (option -s for also generating
3515	# sequence mode data)
3516	process_dvr_output -d DATA_DVR -f $fname -s
3517
3518	else
3519
3520	# Process the local output
3521	process_dvr_output -l -d DATA_DVR -f $fname
3522
3523	fi
3524
3525	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3526	then
3527
3528	# Process dvr output generated in local mode (dvrp_output=local)
3529	process_dvr_output -l -d DATA_DVR -f $fname
3530
3531	fi
3532	fi
3533
3534
3535
3536	# Call of combine_plot_fields in order to merge single files written
3537	# by each PE into one file.
3538	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3539	then
3540	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3541	printf "\n 2d- and/or 3d-data may be incomplete!"
3542	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3543	else
3544	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3545	combine_plot_fields${block}.x
3546	fi
3547
3548
3549
3550	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3551	(( i = 0 ))
3552	while (( i < ioc ))
3553	do
3554	(( i = i + 1 ))
3555	if (( i == 1 ))
3556	then
3557	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3558	fi
3559	printf "\n >>> ${out_command[$i]}"
3560	eval ${out_command[$i]}
3561	if (( i == ioc ))
3562	then
3563	printf "\n$striche\n"
3564	fi
3565	done
3566
3567
3568	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3569	if [[ $do_trace = true ]]
3570	then
3571	printf "\n\n"
3572	ls -al
3573	fi
3574
3575
3576
3577	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3578	(( i = 0 ))
3579	while (( i < iout ))
3580	do
3581	(( i = i + 1 ))
3582	if (( i == 1 ))
3583	then
3584	printf "\n\n *** saving OUTPUT-files:\n$striche"
3585	fi
3586
3587	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3588	files_for_pes=false; filetyp=file
3589	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3590	then
3591	files_for_pes=true; filetyp=directory
3592	actionout[$i]=""
3593	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3594	then
3595	actionout[$i]=""
3596	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3597	then
3598	files_for_pes=true; filetyp=directory
3599	actionout[$i]="ar"
3600	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3601	then
3602	actionout[$i]="ar"
3603	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3604	then
3605	files_for_pes=true; filetyp=directory
3606	actionout[$i]="fl"
3607	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3608	then
3609	actionout[$i]="fl"
3610	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3611	then
3612	files_for_pes=true; filetyp=directory
3613	actionout[$i]="tr"
3614	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3615	then
3616	actionout[$i]="tr"
3617	fi
3618
3619	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3620	then
3621	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3622	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3623	then
3624	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3625	else
3626
3627
3628	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3629	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3630	# REMOTE-RECHNUNGEN
3631	if [[ "${actionout[$i]}" = tr ]]
3632	then
3633	if [[ $localhost != $fromhost ]]
3634	then
3635	if [[ $files_for_pes = false ]]
3636	then
3637	cps=""
3638	cst=""
3639	else
3640	cps=-c
3641	cst="/"
3642	fi
3643	if [[ $localhost = nech ]]
3644	then
3645
3646	# TRANSFER IN EIGENSTAENDIGEM JOB
3647	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3648	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3649	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3650	if [[ $files_for_pes = false ]]
3651	then
3652	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3653	else
3654	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3655	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3656	fi
3657
3658	echo "set -x" > transfer_${localout[$i]}
3659	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3660
3661	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3662	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3663	printf "\n or higher cycle\n"
3664	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3665
3666	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3667
3668	if [[ $localhost = nech ]]
3669	then
3670	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3671	else
3672	if [[ "$LOGNAME" = b323013 ]]
3673	then
3674	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3675	else
3676	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3677	fi
3678	fi
3679
3680	else
3681
3682	# TRANSFER INNERHALB DIESES JOBS
3683	transfer_failed=false
3684	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3685	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3686	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3687	[[ $? != 0 ]] && transfer_failed=true
3688
3689	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3690	# LOKALER MASCHINE ANLEGEN
3691	if [[ $transfer_failed = true ]]
3692	then
3693	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3694	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3695
3696	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3697	# ANLEGEN.
3698	eval local_catalog=${pathout[$i]}
3699	if [[ ! -d $local_catalog ]]
3700	then
3701	printf " *** local directory does not exist. Trying to create:\n"
3702	printf " $local_catalog \n"
3703	mkdir -p $local_catalog
3704	fi
3705	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3706	transfer_problems=true
3707	fi
3708	fi
3709	else
3710
3711	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3712	actionout[$i]=""
3713	fi
3714	fi
3715
3716
3717	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3718	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3719	# REMOTE-RECHNUNGEN
3720	if [[ "${actionout[$i]}" = tra ]]
3721	then
3722	if [[ $localhost != $fromhost ]]
3723	then
3724	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3725	then
3726
3727	# TRANSFER IN EIGENSTAENDIGEM JOB
3728	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3729	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3730	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3731	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3732
3733	echo "set -x" > transfer_${localout[$i]}
3734	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3735
3736	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3737	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3738	printf "\n or higher cycle\n"
3739	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3740
3741	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3742
3743	if [[ $localhost = nech ]]
3744	then
3745	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3746	else
3747	if [[ $LOGNAME = b323013 ]]
3748	then
3749	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3750	else
3751	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3752	fi
3753	fi
3754
3755	else
3756
3757	# TRANSFER INNERHALB DIESES JOBS
3758	transfer_failed=false
3759	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3760	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3761	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3762	[[ $? != 0 ]] && transfer_failed=true
3763
3764	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3765	# LOKALER MASCHINE ANLEGEN
3766	if [[ $transfer_failed = true ]]
3767	then
3768	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3769	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3770
3771	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3772	# ANLEGEN
3773	eval local_catalog=${pathout[$i]}
3774	if [[ ! -d $local_catalog ]]
3775	then
3776	printf " *** local directory does not exist. Trying to create:\n"
3777	printf " $local_catalog \n"
3778	mkdir -p $local_catalog
3779	fi
3780
3781	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3782	transfer_problems=true
3783	fi
3784	fi
3785	else
3786
3787	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3788	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3789	actionout[$i]=a
3790	fi
3791	fi
3792
3793
3794	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3795	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3796	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3797	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3798	if [[ "${actionout[$i]}" = fl ]]
3799	then
3800	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3801	chmod g+rx $tmp_data_catalog
3802	if [[ $files_for_pes = false ]]
3803	then
3804	printf "\n >>> OUTPUT: ${localout[$i]} to"
3805	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3806	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3807	else
3808	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3809	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3810	mkdir $tmp_data_catalog/${frelout[$i]}
3811	cd ${localout[$i]}
3812	for file in $(ls *)
3813	do
3814	ln -f $file $tmp_data_catalog/${frelout[$i]}
3815	done
3816	cd $TEMPDIR
3817	fi
3818
3819
3820	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3821	if [[ $store_on_archive_system = true ]]
3822	then
3823
3824	if [[ $archive_system = asterix ]]
3825	then
3826	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3827	if [[ $files_for_pes = false ]]
3828	then
3829	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3830	else
3831	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3832	fi
3833	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3834	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3835	echo "then" >> archive_${frelout[$i]}
3836	echo " do_stageout=false" >> archive_${frelout[$i]}
3837	echo "else" >> archive_${frelout[$i]}
3838	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3839	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3840	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3841	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3842	if [[ $files_for_pes = false ]]
3843	then
3844	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3845	else
3846	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3847	fi
3848	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3849	echo "fi" >> archive_${frelout[$i]}
3850	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3851	elif [[ $archive_system = DMF ]]
3852	then
3853	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3854	if [[ $files_for_pes = false ]]
3855	then
3856	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3857	locat=DMF
3858	exit
3859	else
3860	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3861	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3862	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3863	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3864	fi
3865	elif [[ $archive_system = tivoli ]]
3866	then
3867	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3868	if [[ $files_for_pes = false ]]
3869	then
3870	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3871	echo "set -x" >> archive_${frelout[$i]}
3872	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3873	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3874	else
3875
3876	echo "set -x" >> archive_${frelout[$i]}
3877	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3878	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3879	cd $tmp_data_catalog
3880	all_files=`ls -1 ${frelout[$i]}/*`
3881	cd - > /dev/null
3882	(( inode = 0 ))
3883	(( tp1 = tasks_per_node + 1 ))
3884	while (( inode < nodes ))
3885	do
3886	# echo "*** all_files = \"$all_files\" "
3887	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3888	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3889	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3890	# echo "*** files = \"$files\" "
3891	# echo "*** all_files = \"$all_files\" "
3892	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3893	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3894	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3895	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3896	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3897	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3898	(( inode = inode + 1 ))
3899	done
3900	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3901	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3902	fi
3903	elif [[ $archive_system = ut ]]
3904	then
3905	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3906	if [[ $files_for_pes = false ]]
3907	then
3908	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3909	echo "set -x" >> archive_${frelout[$i]}
3910	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3911	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3912	else
3913
3914	echo "set -x" >> archive_${frelout[$i]}
3915	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3916	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3917	cd $tmp_data_catalog
3918	all_files=`ls -1 ${frelout[$i]}/*`
3919	cd - > /dev/null
3920	(( inode = 0 ))
3921	(( tp1 = tasks_per_node + 1 ))
3922	while (( inode < nodes ))
3923	do
3924	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3925	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3926	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3927	(( inode = inode + 1 ))
3928	done
3929	fi
3930	elif [[ $archive_system = none ]]
3931	then
3932	printf " +++ archiving on $localhost not available!\n"
3933	fi
3934
3935	if [[ $archive_system != none ]]
3936	then
3937	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3938	then
3939	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3940	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3941	elif [[ $localhost = nech ]]
3942	then
3943	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3944	fi
3945	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3946	fi
3947	else
3948	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3949	fi
3950
3951
3952	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3953	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3954	if [[ $files_for_pes = false ]]
3955	then
3956	cat /dev/null > ${pathout[$i]}
3957	else
3958	mkdir -p ${pathout[$i]}
3959	fi
3960
3961	fi
3962
3963
3964	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3965	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3966	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3967	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3968	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3969	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3970	if [[ "${actionout[$i]}" = ar ]]
3971	then
3972	if [[ $files_for_pes = false ]]
3973	then
3974	printf "\n >>> OUTPUT: ${localout[$i]} to"
3975	printf "\n ${pathout[$i]}"
3976	printf "\n File will be copied to archive-system ($archive_system) !\n"
3977	else
3978	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3979	printf "\n ${pathout[$i]}"
3980	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3981	fi
3982	mv ${localout[$i]} ${frelout[$i]}
3983
3984	file_saved=false
3985
3986	if [[ $archive_system = asterix ]]
3987	then
3988	do_stageout=true
3989	(( stageout_anz = 0 ))
3990	while [[ $do_stageout = true ]]
3991	do
3992	if [[ $files_for_pes = false ]]
3993	then
3994	stageout ${frelout[$i]} > STAGE_OUTPUT
3995	else
3996	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3997	fi
3998	cat STAGE_OUTPUT
3999	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4000	then
4001	file_saved=true
4002	do_stageout=false
4003	else
4004	if [[ $files_for_pes = false ]]
4005	then
4006	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4007	else
4008	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4009	fi
4010	(( stageout_anz = stageout_anz + 1 ))
4011	if (( stageout_anz == 10 ))
4012	then
4013	printf "\n +++ stoped after 10 unsuccessful tries!"
4014	archive_save=false
4015	do_stageout=false
4016	else
4017	printf "\n *** new try to store on archive after 15 min:"
4018	sleep 900
4019	fi
4020	fi
4021	done
4022	elif [[ $archive_system = DMF ]]
4023	then
4024	if [[ $files_for_pes = false ]]
4025	then
4026	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4027	locat=DMF
4028	exit
4029	else
4030	rm -rf $ARCHIVE/${frelout[$i]}
4031	cp -r ${frelout[$i]} $ARCHIVE
4032	fi
4033	file_saved=true
4034	elif [[ $archive_system = tivoli ]]
4035	then
4036	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4037	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4038	# GELEGT WERDEN
4039	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4040	chmod g+rx $tmp_data_catalog
4041	if [[ $files_for_pes = false ]]
4042	then
4043	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4044	else
4045	mkdir $tmp_data_catalog/${frelout[$i]}
4046	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4047	fi
4048
4049	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4050	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4051	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4052	if [[ $files_for_pes = false ]]
4053	then
4054	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4055	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4056	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4057	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4058	else
4059	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4060	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4061	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4062	fi
4063
4064	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4065	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4066	file_saved=true
4067
4068	elif [[ $archive_system = ut ]]
4069	then
4070	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4071	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4072	# GELEGT WERDEN
4073	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4074	chmod g+rx $tmp_data_catalog
4075	if [[ $files_for_pes = false ]]
4076	then
4077	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4078	else
4079	mkdir $tmp_data_catalog/${frelout[$i]}
4080	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4081	fi
4082
4083	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4084	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4085	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4086	if [[ $files_for_pes = false ]]
4087	then
4088	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4089	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4090	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4091	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4092	else
4093	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4094	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4095	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4096	fi
4097
4098	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4099	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4100	file_saved=true
4101
4102	else
4103	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4104	archive_save=false
4105	fi
4106	if [[ $file_saved = true ]]
4107	then
4108	if [[ $files_for_pes = false ]]
4109	then
4110	cat /dev/null > ${pathout[$i]}
4111	else
4112	mkdir -p ${pathout[$i]}
4113	fi
4114	fi
4115	fi
4116
4117	# APPEND AUF LOKALER MASCHINE
4118	if [[ "${actionout[$i]}" = "a" ]]
4119	then
4120	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4121	cat ${localout[$i]} >> ${pathout[$i]}
4122	fi
4123
4124	# KOPIEREN AUF LOKALER MASCHINE
4125	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4126	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4127	then
4128
4129	# KOPIEREN AUF EINPROZESSORMASCHINE
4130	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4131	then
4132	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4133	if [[ $link_local_output = true ]]
4134	then
4135	printf " using ln -f\n"
4136	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4137	fi
4138	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4139	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4140	then
4141	if [[ $link_local_output = true ]]
4142	then
4143	printf " ln failed, using cp...\n"
4144	fi
4145	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4146	fi
4147	else
4148	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4149	if [[ $link_local_output = true ]]
4150	then
4151	printf " using ln -f\n"
4152	ln -f ${localout[$i]} ${pathout[$i]}
4153	fi
4154	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4155	if [[ ! -f "${pathout[$i]}" ]]
4156	then
4157	if [[ $link_local_output = true ]]
4158	then
4159	printf " ln failed, using cp...\n"
4160	fi
4161	cp ${localout[$i]} ${pathout[$i]}
4162	fi
4163	fi
4164
4165	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4166	then
4167
4168	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4169	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4170	# WIRD DANN KOPIERT
4171	# PER MOVE UMBENANNT WERDEN
4172	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4173	if [[ $link_local_output = true ]]
4174	then
4175	printf " using ln -f\n"
4176	mkdir ${pathout[$i]}
4177	cd ${localout[$i]}
4178	for file in $(ls *)
4179	do
4180	ln -f $file ${pathout[$i]}
4181	done
4182	cd $TEMPDIR
4183	fi
4184	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4185	if [[ ! -f "${pathout[$i]}/_0000" ]]
4186	then
4187	if [[ $link_local_output = true ]]
4188	then
4189	printf " ln failed for .../_0000, using cp...\n"
4190	fi
4191	cp -r ${localout[$i]} ${pathout[$i]}
4192	fi
4193
4194	fi
4195	fi
4196	done
4197	if (( i != 0 ))
4198	then
4199	if [[ $transfer_problems = true ]]
4200	then
4201	printf "\n$striche\n *** OUTPUT-files saved"
4202	printf "\n +++ WARNING: some data transfers failed! \n"
4203	else
4204	printf "\n$striche\n *** all OUTPUT-files saved \n"
4205	fi
4206	fi
4207
4208
4209	# EVENTUELL FOLGEJOB STARTEN
4210	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4211	if [[ -f CONTINUE_RUN ]]
4212	then
4213
4214	if [[ $archive_save = true ]]
4215	then
4216
4217	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4218	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4219	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4220	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4221	# HANDEN
4222	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4223	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4224	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4225	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4226	then
4227	mc=`echo $mc \| sed 's/#/f/g'`
4228	fi
4229
4230
4231	# JOB STARTEN
4232	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4233	echo " $mc"
4234	printf "\n$striche\n"
4235	if [[ $localhost != $fromhost ]]
4236	then
4237
4238	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4239	then
4240	echo "*** ssh will be used to initiate restart-runs!"
4241	echo " return_addres=\"$return_addres\" "
4242	echo " return_username=\"$return_username\" "
4243	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4244	then
4245	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4246	else
4247	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4248	fi
4249	else
4250	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4251	locat=restart; exit
4252	fi
4253
4254	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4255	# DER AKTUELLE JOB ENDET
4256	if [[ $queue = special1q ]]
4257	then
4258	sleep 120
4259	else
4260	sleep 30
4261	fi
4262
4263	else
4264
4265	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4266	# RUFEN WERDEN, AUSSER AUF lcfimm
4267	cd $LOCAL_PWD
4268	if [[ $localhost = lcfimm ]]
4269	then
4270	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4271	else
4272	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4273	fi
4274	cd - > /dev/null
4275	fi
4276	printf "\n$striche\n *** restart-run initiated \n"
4277
4278
4279	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4280	# GEHOLT WORDEN SIND, LOESCHEN
4281	(( i = 0 ))
4282	while (( i < iin ))
4283	do
4284	(( i = i + 1 ))
4285	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4286	then
4287	rm -r $tmp_data_catalog/${frelin[$i]}
4288	fi
4289	done
4290
4291	else
4292
4293	printf "\n +++ no restart-run possible, since errors occured"
4294	printf "\n during the archive process"
4295	fi
4296
4297	fi
4298
4299
4300
4301	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4302	if [[ "$email_notification" != "none" ]]
4303	then
4304
4305	if [[ $localhost != $fromhost ]]
4306	then
4307	if [[ -f CONTINUE_RUN ]]
4308	then
4309	echo "PALM restart run necessary" > email_text
4310	echo "description header of actual run:" >> email_text
4311	cat CONTINUE_RUN >> email_text
4312	echo "mrun-command to restart:" >> email_text
4313	echo "$mc" >> email_text
4314	else
4315	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4316	fi
4317	mail $email_notification < email_text
4318	printf "\n *** email notification sent to \"$email_notification\" "
4319	fi
4320	fi
4321
4322
4323
4324	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4325	cd $HOME
4326	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4327
4328	else
4329
4330
4331	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4332	# CHENDE AKTIONEN DURCHGEFUEHRT
4333
4334	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4335	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4336	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4337	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4338	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4339	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4340	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4341	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4342	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4343	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4344	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4345	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4346	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4347	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4348	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4349	if [[ $use_openmp = true ]]
4350	then
4351	mrun_com=${mrun_com}" -O $threads_per_task"
4352	fi
4353	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4354	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4355	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4356	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4357	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4358	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4359	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4360	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4361	if [[ $do_remote = true ]]
4362	then
4363	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4364	fi
4365
4366
4367	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4368	jobfile=jobfile.$RANDOM
4369
4370
4371	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4372	echo "mkdir $TEMPDIR" >> $jobfile
4373	echo "cd $TEMPDIR" >> $jobfile
4374
4375
4376	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4377	if [[ $do_trace = true ]]
4378	then
4379	echo "set -x" >> $jobfile
4380	else
4381	echo "set +vx" >> $jobfile
4382	fi
4383
4384
4385	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4386	# DATEI FUER DEN JOB
4387	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4388	then
4389
4390	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4391	# KOPIEREN
4392	if [[ $restart_run != true ]]
4393	then
4394	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4395	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4396	fi
4397
4398	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4399	echo "set -x" >> $jobfile
4400	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4401	echo "export SOURCES_COMPLETE=true" >> $jobfile
4402
4403	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4404	# ARBEITSVERZEICHNIS VERSCHIEBEN
4405	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4406	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4407	echo "execute_mrun=true" >> $jobfile
4408	echo " " >> $jobfile
4409
4410	else
4411
4412	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4413	# SOWIE GEGEBENENFALLS DES MAKEFILES
4414	if [[ $do_compile = true ]]
4415	then
4416
4417	source_catalog=SOURCES_FOR_RUN_$fname
4418
4419	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4420	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4421	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4422	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4423	echo "export SOURCES_COMPLETE=true" >> $jobfile
4424	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4425
4426	for filename in $source_list
4427	do
4428	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4429	echo "cat > $filename << \"%END%\"" >> $jobfile
4430	cat $source_catalog/$filename >> $jobfile
4431	echo " " >> $jobfile
4432	echo "%END%" >> $jobfile
4433	echo " " >> $jobfile
4434	done
4435
4436	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4437	echo "cat > Makefile << \"%END%\"" >> $jobfile
4438	cat $source_catalog/Makefile >> $jobfile
4439	echo " " >> $jobfile
4440	echo "%END%" >> $jobfile
4441	echo " " >> $jobfile
4442
4443	echo "cd - > /dev/null" >> $jobfile
4444
4445	fi
4446
4447
4448	# ABSPEICHERN DER KONFIGURATIONSDATEI
4449	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4450	echo "cat > $config_file << \"%END%\"" >> $jobfile
4451	cat $config_file >> $jobfile
4452	echo "%END%" >> $jobfile
4453	echo " " >> $jobfile
4454
4455
4456	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4457	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4458	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4459	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4460	echo "%END%" >> $jobfile
4461	echo "chmod u+x $mrun_script_name" >> $jobfile
4462	echo "execute_mrun=true" >> $jobfile
4463	echo " " >> $jobfile
4464
4465	fi
4466
4467
4468	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4469	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4470	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4471	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4472	if [[ $do_remote = true ]]
4473	then
4474	(( i = 0 ))
4475	while (( i < iin ))
4476	do
4477	(( i = i + 1 ))
4478	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4479	if [[ "${transin[$i]}" = job ]]
4480	then
4481	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4482	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4483	echo " " >> $jobfile
4484	echo "%END%" >> $jobfile
4485	else
4486	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4487	fi
4488
4489	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4490	echo "if [[ \$? = 1 ]]" >> $jobfile
4491	echo "then" >> $jobfile
4492	echo " echo \" \" " >> $jobfile
4493	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4494	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4495	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4496	echo " execute_mrun=false" >> $jobfile
4497	echo "fi" >> $jobfile
4498	done
4499	fi
4500
4501	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4502	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4503	echo "LOCAL_PWD=$working_directory" >> $jobfile
4504	echo "export LOCAL_PWD" >> $jobfile
4505
4506	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4507	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4508	echo "export LOCAL_MRUN_PATH" >> $jobfile
4509
4510	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4511	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4512	then
4513	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4514	fi
4515
4516	# MRUN AUF ZIELRECHNER AUFRUFEN
4517	echo "set -x" >> $jobfile
4518	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4519
4520	echo 'ls -al; echo `pwd`' >> $jobfile
4521	echo "cd \$HOME" >> $jobfile
4522	echo "rm -rf $TEMPDIR" >> $jobfile
4523
4524
4525
4526
4527	# JOB PER SUBJOB STARTEN
4528	if [[ $silent = false ]]
4529	then
4530	printf "\n "
4531	else
4532	printf "\n\n"
4533	fi
4534
4535	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4536	rm -rf $jobfile
4537
4538
4539	fi # ENDE REMOTE-TEIL
4540
4541
4542
4543	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 689

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