Home

Context Navigation

mrun @ 783

Last change on this file since 783 was 759, checked in by raasch, 13 years ago

New:
---

The number of parallel I/O operations can be limited with new mrun-option -w.
(advec_particles, data_output_2d, data_output_3d, header, init_grid, init_pegrid, init_3d_model, modules, palm, parin, write_3d_binary)

Changed:

mrun option -T is obligatory

Errors:

Bugfix: No zero assignments to volume_flow_initial and volume_flow_area in
case of normal restart runs. (init_3d_model)

initialization of u_0, v_0. This is just to avoid access of uninitialized
memory in exchange_horiz_2d, which causes respective error messages
when the Intel thread checker (inspector) is used. (production_e)

Bugfix for ts limitation (prandtl_fluxes)

Property svn:keywords set to Id Rev

File size: 177.8 KB

Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 759 2011-09-15 13:58:31Z heinze $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[544]	210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
[555]	211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
[622]	212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
	213	# has now argument threads_per_task
	214	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	216	# institute of technology (lctit)
[759]	217	# 23/12/10 - Micha - different number of processors in ocean and
	218	# atmosphere is now allowed
[678]	219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
	220	# usage
[696]	221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
[693]	222	# usage, totalview usage extended
[721]	223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
	224	# 03/04/11 - Micha - added lckordi
	225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
[738]	226	# 17/08/11 - Siggi - extensions for impi library
[759]	227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
	228	# (.nc)
[746]	229	# 18/08/11 - Marcus - support for Linux OS with German locale
[759]	230	# - properly report hosts on general Linux clusters
[755]	231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
[759]	232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
	233	# IMUK
	234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
	235	# io streams, option -T is obligatory from now on
[437]	236
[1]	237
	238	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	239
	240	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	241	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	242	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	243
	244	AddFilenames=""
	245	additional_conditions=""
	246	add_source_path=""
	247	afname=""
	248	archive_save=true
	249	archive_system=none
	250	compiler_name=""
	251	cond1=""
	252	cond2=""
	253	config_file=.mrun.config
[206]	254	coupled_dist=""
	255	coupled_mode="mpi1"
[1]	256	cpp_opts=""
[82]	257	cpp_options=""
[1]	258	cpumax=0
	259	cpurest=0
	260	delete_temporary_catalog=true
	261	do_batch=false
	262	do_compile=true
	263	do_remote=false
	264	do_stagein=true
	265	do_stageout=true
	266	do_trace=false
[352]	267	email_notification="none"
[1]	268	exclude=""
	269	executable=""
	270	execution_error=false
[67]	271	fimm=false
[1]	272	fname=test
	273	fromhost=""
[78]	274	global_revision=""
[122]	275	group_number=none
[1]	276	host=""
	277	host_file=""
	278	hp=""
	279	ignore_archive_error=false
	280	input_list=""
	281	interpreted_config_file=""
[164]	282	job_catalog="~/job_queue"
[1]	283	job_on_file=""
	284	keep_data_from_previous_run=false
[183]	285	link_local_input=false
[149]	286	link_local_output=false
[1]	287	localhost_realname=$(hostname)
	288	local_compile=false
[260]	289	local_dvrserver_running=.FALSE.
[1]	290	locat=normal
	291	mainprog=""
	292	makefile=""
[759]	293	max_par_io_str=""
[1]	294	mc=$0
	295	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	296	do
	297	mc=`echo $mc \| cut -f2- -d"/"`
	298	done
[493]	299	module_calls=""
[1]	300	mrun_script_name=$mc
[82]	301	netcdf_inc=""
	302	netcdf_lib=""
[1]	303	netcdf_support=false
	304	node_usage=default
	305	numprocs=""
[206]	306	numprocs_atmos=0
	307	numprocs_ocean=0
[1]	308	OOPT=""
	309	openmp=false
	310	output_list=""
	311	package_list=""
	312	punkte="..........................................................."
	313	queue=none
	314	read_from_config=""
[5]	315	restart_run=false
[622]	316	if [[ `hostname` = rte10 ]]
[1]	317	then
[622]	318	return_addres=133.5.185.60
[693]	319	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
	320	elif [[ `hostname` = climate0 ]]
	321	then
	322	return_addres=165.132.26.68
	323	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
[622]	324	else
	325	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	326	fi
	327	return_password=""
	328	return_username=$LOGNAME
	329	remotecall=false
	330	remote_username=""
[102]	331	run_coupled_model=false
[1]	332	run_mode=""
	333	scirocco=false
[397]	334	store_on_archive_system=false
[1]	335	striche=" ----------------------------------------------------------------------------"
	336	silent=false
	337	source_list=""
	338	source_path=SOURCE
	339	tasks_per_node=""
	340	threads_per_task=1
	341	tmpcreate=false
	342	tmp_data_catalog=""
	343	transfer_problems=false
	344	usern=$LOGNAME
[377]	345	use_openmp=false
[1]	346	working_directory=`pwd`
	347	TOPT=""
	348	XOPT=""
	349	zeit=$( date \| cut -c 12-19 )
	350
	351	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	352	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	353
[66]	354	typeset -R30 calltime
[1]	355	typeset -L20 spalte1
	356	typeset -L40 spalte2
	357	typeset -L60 spalte3
	358	typeset -L35 string1=`date`
	359	typeset -L12 string2=$usern
	360	typeset -L12 string3=$localhost_realname
	361	typeset -L12 string4
	362	typeset -L12 string5
[201]	363	typeset -L30 version="MRUN 2.0 Rev$Rev: 759 $"
[1]	364
	365
	366
	367	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	368	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	369
	370	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	371	# EXPORTIERT WERDEN
	372	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	373	export group_number input_list memory numprocs output_list queue run_mode
[1]	374
	375
	376
	377	# FEHLERBEHANDLUNG
	378	# BEI EXIT:
[83]	379	trap 'rm -rf $working_directory/tmp_mrun
[69]	380	if [[ $locat != localhost ]]
[1]	381	then
[22]	382	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	383	# then
	384	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	385	#MRUN-calls on $localhost
	386	#
	387	#date and time user localhost remotehost termination mrun-command
	388	#--------------------------------------------------------------------------------------------------------------------
	389	#%STATEND%
	390	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	391	# fi
	392	#
	393	# # EINTRAG IN DIE STATISTIK-DATEI
	394	# string4=$host
	395	# string5=$locat
	396	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	397	# then
	398	# if [[ $do_batch = true ]]
	399	# then
	400	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	401	# else
	402	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	403	# fi
	404	# fi
[69]	405	echo " " > /dev/null
[1]	406	fi
	407
	408	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	409	then
	410
	411	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	412	(( i = 0 ))
	413	while (( i < iec ))
	414	do
	415	(( i = i + 1 ))
	416	printf "\n *** Execution of ERROR-command:\n"
	417	printf " >>> ${err_command[$i]}\n"
	418	eval ${err_command[$i]}
	419	done
	420	if [[ -n $interpreted_config_file ]] then
	421	rm -rf $interpreted_config_file
	422	fi
[71]	423	if [[ -n .mrun_environment ]] then
	424	rm -rf .mrun_environment
	425	fi
[1]	426	if [[ $tmpcreate = true ]]
	427	then
	428	printf "\n *** Contents of \"$TEMPDIR\":\n"
	429	ls -al; cd
	430	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	431	fi
[260]	432	if [[ "$dvrserver_id" != "" ]]
	433	then
	434	echo "+++ killing dvrserver_id=$dvrserver_id"
	435	kill $dvrserver_id
	436	fi
[1]	437	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	438	then
	439	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	440	fi
	441	printf "\n\n+++ MRUN killed \n\n"
	442	elif [[ $locat != control_c ]]
	443	then
	444	printf "\n\n --> all actions finished\n\n"
	445	printf " Bye, bye $usern !!\n\n"
	446	fi' exit
	447
	448
	449	# BEI TERMINAL-BREAK:
[83]	450	trap 'rm -rf $working_directory/tmp_mrun
[69]	451	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	452	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	453	then
	454	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	455	fi
[260]	456	if [[ "$dvrserver_id" != "" ]]
	457	then
	458	echo "+++ killing dvrserver_id=$dvrserver_id"
	459	kill $dvrserver_id
	460	fi
[1]	461	printf "\n+++ MRUN killed by \"^C\" \n\n"
	462	locat=control_c
	463	exit
	464	' 2
	465
	466
[22]	467	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	468	# BEEN SET
	469	if [[ "$PALM_BIN" = "" ]]
	470	then
	471	printf "\n +++ environment variable PALM_BIN has not been set"
	472	printf "\n please set it to the directory where the PALM scripts are located"
	473	locat=palm_bin; exit
	474	fi
[180]	475	export PATH=$PALM_BIN:$PATH
[22]	476
	477
[1]	478
	479	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	480	# FUER FOLGEJOBS BENOETIGT WIRD
[759]	481	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY: option
[1]	482	do
	483	case $option in
	484	(a) afname=$OPTARG;;
[397]	485	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	486	(b) do_batch=true; mc="$mc -b";;
	487	(B) delete_temporary_catalog=false; mc="$mc -B";;
	488	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	489	(C) restart_run=true; mc="$mc -C";;
[1]	490	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	491	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	492	(F) job_on_file="-D"; mc="$mc -F";;
[122]	493	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	494	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	495	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	496	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	497	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	498	(I) ignore_archive_error=true; mc="$mc -I";;
	499	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	500	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	501	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	502	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	503	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	504	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
[622]	505	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
[1]	506	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	507	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	508	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	509	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	510	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	511	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	512	(S) read_from_config=false; mc="$mc -S";;
	513	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
[759]	514	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
[1]	515	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	516	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	517	(v) silent=true; mc="$mc -v";;
[759]	518	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
[1]	519	(x) do_trace=true;set -x; mc="$mc -x";;
	520	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	521	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	522	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	523	(\?) printf "\n +++ unknown option $OPTARG \n"
	524	printf "\n --> type \"$0 ?\" for available options \n"
	525	locat=parameter;exit;;
	526	esac
	527	done
	528
	529
	530	# EVTL. POSITIONSPARAMETER EINLESEN
	531	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	532	shift OPTIND-1
	533
	534
	535	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	536	if [[ "$1" = "?" ]]
	537	then
	538	(printf "\n *** mrun can be called as follows:\n"
[291]	539	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	540	printf "\n Description of available options:\n"
	541	printf "\n Option Description Default-Value"
	542	printf "\n -a base name of input files equiv. -d"
[400]	543	printf "\n -A archiving when using file-attribute fl"
[1]	544	printf "\n -b batch-job on local machine ---"
	545	printf "\n -B do not delete temporary directory at end ---"
	546	printf "\n -c configuration file .mrun.config"
	547	printf "\n -d base name of files attached to program test"
	548	printf "\n -D preprocessor(cpp)-directives \"\" "
	549	printf "\n -F create remote job file only ---"
	550	printf "\n -h execution host $localhost_realname"
	551	printf "\n -i INPUT control list \"\" "
	552	printf "\n -I archiving errors of previous batch-jobs"
	553	printf "\n will be ignored"
	554	printf "\n -k keep data from previous run"
	555	printf "\n -K additional conditions for controling"
	556	printf "\n usage of conditional code and"
	557	printf "\n env-variables in configuration file \"\" "
	558	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	559	printf "\n -M Makefile name Makefile"
	560	printf "\n -n node usage (shared/not_shared) depending on -h"
	561	printf "\n -o OUTPUT control list \"\" "
	562	printf "\n -O use OpenMP ---"
	563	printf "\n -p software package list \"\" "
	564	printf "\n -q queue \"$queue\" "
	565	printf "\n -r run control list (combines -i -o) \"\" "
	566	printf "\n -s filenames of routines to be compiled \"\" "
	567	printf "\n must end with .f, .f90, .F, or .c !"
	568	printf "\n use \"..\" for more than one file and wildcards"
	569	printf "\n -s TEST compiles all files with w-permit"
	570	printf "\n -S config file interpreted by shellscript ---"
	571	printf "\n -t allowed cpu-time in seconds (batch) 0"
	572	printf "\n -T tasks per node depending on -h"
	573	printf "\n -u username on remote machine \"\" "
	574	printf "\n -v no prompt for confirmation ---"
[759]	575	printf "\n -w maximum parallel io streams as given by -X"
[1]	576	printf "\n -x tracing of mrun for debug purposes ---"
	577	printf "\n -X # of processors (on parallel machines) 1"
[291]	578	printf "\n -y add appendix \"_O\" to all local output"
	579	printf "\n files (ocean precursor runs followed by"
	580	printf "\n coupled atmosphere-ocean runs) ---"
[206]	581	printf "\n -Y run coupled model, \"#1 #2\" with"
	582	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	583	printf "\n "
	584	printf "\n Possible values of positional parameter <modus>:"
	585	printf "\n \"?\" - this outline \n\n") \| more
	586	exit
	587	elif [[ "$1" != "" ]]
	588	then
	589	printf "\n +++ positional parameter $1 unknown \n"
	590	locat=parameter; exit
	591	fi
	592
	593
	594
	595	# KURZE STARTMELDUNG
	596	printf "\n*** $version "
	597	printf "\n will be executed. Please wait ..."
	598
	599
[82]	600
	601	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	602	if [[ ! -f $config_file ]]
	603	then
	604	printf "\n\n +++ configuration file: "
	605	printf "\n $config_file"
	606	printf "\n does not exist"
	607	locat=connect; exit
	608	fi
	609
	610
	611	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	612	line=""
	613	grep "%host_identifier" $config_file > tmp_mrun
	614	while read line
	615	do
[206]	616	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	617	then
	618	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	619	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	620	if [[ $localhost_realname = $HOSTNAME ]]
[82]	621	then
	622	localhost=$host_identifier
	623	break
	624	fi
	625	fi
	626	done < tmp_mrun
	627
	628	if [[ "$localhost" = "" ]]
	629	then
	630	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	631	printf "\n for local host \"$localhost_realname\"."
	632	printf "\n Please add line"
	633	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	634	printf "\n to the configuration file."
	635	locat=localhost; exit
	636	fi
	637
	638
	639	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	640	case $localhost_realname in
[397]	641	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	642	(cs*) archive_system=ut;;
	643	(fimm.bccs.uib.no) fimm=true;;
	644	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	645	(scirocco) scirocco=true;;
	646	esac
	647
	648
	649
[1]	650	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	651	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	652	[[ "$afname" = "" ]] && afname=$fname
	653
	654
	655	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	656	if [[ "$run_mode" != "" ]]
	657	then
	658	input_list="$input_list $run_mode"
	659	output_list="$output_list $run_mode"
	660	fi
	661
	662
	663	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	664	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	665	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	666	# STARTET)
	667	if [[ "$fromhost" = "" ]]
	668	then
	669	fromhost=$localhost
	670	fi
	671
	672
	673	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	674	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	675	then
	676	source_list=TEST
	677	local_compile=true
	678	host=$localhost
	679	fi
	680
	681
	682	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	683	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	684	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	685	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	686	if [[ -n $host && "$host" != $localhost ]]
	687	then
	688	do_batch=true
	689	do_remote=true
	690	case $host in
[717]	691	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	692	(*) printf "\n"
[83]	693	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	694	printf "\n is not available"
[1]	695	locat=nqs; (( iec = 0 )); exit;;
	696	esac
	697	else
	698	host=$localhost
	699	fi
	700
	701
	702	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	703	if [[ -n $additional_conditions ]]
	704	then
[69]	705	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	706	cond1=`echo $additional_conditions \| cut -d" " -f1`
	707	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	708	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	709	if [[ -n $dummy ]]
	710	then
	711	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	712	locat=options; exit
	713	fi
[503]	714	block=_$cond1
	715	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	716	fi
	717
	718
[206]	719	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	720	if [[ $run_coupled_model = true ]]
	721	then
	722
	723	if [[ -n $coupled_dist ]]
	724	then
	725
	726	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	727	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	728
	729	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	730	then
	731
	732	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	733	printf "\n PEs (total) : $numprocs"
	734	printf "\n PEs (atmosphere): $numprocs_atmos"
	735	printf "\n PEs (ocean) : $numprocs_ocean"
	736	locat=coupling; exit
	737
	738	fi
	739
	740	else
	741
	742	(( numprocs_ocean = $numprocs / 2 ))
	743	(( numprocs_atmos = $numprocs / 2 ))
	744
	745	fi
	746	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	747
	748	# GET coupled_mode FROM THE CONFIG FILE
	749	line=""
	750	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	751	while read line
	752	do
	753	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	754	then
	755	coupled_mode="mpi2"
	756	fi
	757	done < tmp_mrun
	758
	759	fi
	760
	761
[1]	762	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	763	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	764	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	765	then
	766	if [[ $ignore_archive_error = false ]]
	767	then
	768	printf "\n +++ data archiving of previous run failed"
	769	printf "\n see directory \~/job_queue on remote machine"
	770	locat=archive; exit
	771	else
	772	printf "\n +++ warning: data archiving in a previous run failed"
	773	printf "\n MRUN continues, trying to get backup copy"
	774	fi
	775	fi
	776
	777
	778
	779	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	780	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	781	if [[ "$read_from_config" = false ]]
	782	then
	783
	784	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	785	while read zeile
	786	do
	787	[[ $silent = false ]] && printf "."
	788
	789
	790	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	791	# ERSETZEN
	792	eval zeile=\"$zeile\"
	793
	794
	795	# INTERPRETATION DER ZEILE
[21]	796	if [[ "$(echo $zeile)" = "" ]]
[1]	797	then
[21]	798	# LEERZEILE, KEINE AKTION
	799	continue
[1]	800
[21]	801	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	802	then
	803
[1]	804	# ZEILE IST KOMMENTARZEILE
	805	true
	806
	807	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	808	then
	809
	810	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	811	zeile=$(echo $zeile \| cut -c2-)
[69]	812	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	813	var=`echo $zeile \| cut -d" " -f1`
	814	value=`echo $zeile \| cut -d" " -s -f2`
	815	for_host=`echo $zeile \| cut -d" " -s -f3`
	816	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	817	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	818
	819	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	820	then
	821
	822	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	823	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	824	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	825
	826
	827	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	828	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	829	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	830	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	831	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	832	# KONFIGURATIONSDATEI
	833	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	834	then
	835	eval $var=\$value
	836
	837	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	838	if [[ $do_trace = true ]]
	839	then
	840	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	841	fi
	842	fi
	843
	844	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	845	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	846	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	847	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	848	if [[ $var = host ]]
	849	then
	850	if [[ -n $host && "$host" != $localhost ]]
	851	then
	852	do_batch=true
	853	do_remote=true
	854	case $host in
[717]	855	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[83]	856	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	857	printf "\n is not available"
[1]	858	locat=nqs; exit;;
	859	esac
	860	else
	861	host=$localhost
	862	fi
	863	fi
	864
	865	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	866	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	867	# DEN PROGRAMMEN BENOETIGT WERDEN
	868	export $var
	869	fi
	870
	871
	872
	873
	874	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	875	then
	876
	877	# ZEILE DEFINIERT ERROR-KOMMANDO
	878	(( iec = iec + 1 ))
	879	zeile=$(echo $zeile \| cut -c4-)
	880	err_command[$iec]="$zeile"
	881
	882	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	883	then
	884
	885	# ZEILE DEFINIERT INPUT-KOMMANDO
	886	(( iic = iic + 1 ))
	887	zeile=$(echo $zeile \| cut -c4-)
	888	in_command[$iic]="$zeile"
	889
	890	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	891	then
	892
	893	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	894	(( ioc = ioc + 1 ))
	895	zeile=$(echo $zeile \| cut -c4-)
	896	out_command[$ioc]="$zeile"
	897
	898	else
	899
	900	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	901	# s2a: in/out - Feld
	902	# s2b: loc - Feld (optional)
	903	# s2c: tr/ar - Feld (optional)
[69]	904	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	905	s1=`echo $zeile \| cut -d" " -f1`
	906	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	907	s2a=$(echo $s2 \| cut -d":" -f1)
	908	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	909	then
	910	s2b=""
	911	s2c=""
	912	else
[69]	913	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	914	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	915	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	916	fi
[69]	917	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	918	s3=`echo $zeile \| cut -d" " -f3`
	919	s4=`echo $zeile \| cut -d" " -s -f4`
	920	s5=`echo $zeile \| cut -d" " -s -f5`
	921	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	922
	923
	924	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	925	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	926	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	927	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	928	# HANDEN SEIN MUSS (D.H. s2b = loc)
	929	IFSALT="$IFS"; IFS="$IFS:"
	930	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	931	then
	932	found=false
	933	for actual in $input_list
	934	do
	935	for formal in $s3
	936	do
	937	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	938	done
	939	done
	940	if [[ $found = true ]]
	941	then
	942	(( iin = iin + 1 ))
	943	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	944	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	945	extin[$iin]=$s6
	946	fi
	947	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	948	then
	949	found=false
	950	for actual in $output_list
	951	do
	952	for formal in $s3
	953	do
	954	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	955	done
	956	done
	957	if [[ $found = true ]]
	958	then
	959	(( iout = iout + 1 ))
	960	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	961	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	962	fi
	963	elif [[ "$s2a" != in && "$s2a" != out ]]
	964	then
	965	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	966	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	967	locat=connect; exit
	968	fi
	969	IFS="$IFSALT"
	970	fi
	971	done < $config_file
	972
	973	else
	974
	975
	976	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	977	[[ $silent = false ]] && printf "..."
	978	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	979	export interpreted_config_file=.icf.$RANDOM
	980
	981
[69]	982
	983	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	984	# VERFUEGUNG STELLEN
	985	cat > .mrun_environment << %%END%%
	986	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	987	config_file = '$config_file', do_remote = '$do_remote',
	988	do_trace = '$do_trace', host = '$host',
	989	input_list = '$input_list', icf = '$interpreted_config_file',
	990	localhost = '$localhost', output_list = '$output_list' /
	991
	992	%%END%%
	993
	994	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	995	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	996	mrun_memory=$memory
[127]	997	mrun_group_number=$group_number
[69]	998	mrun_cpumax=$cpumax
	999	mrun_numprocs=$numprocs
	1000
[251]	1001	if [[ $localhost_realname = "sx-fep" ]]
[66]	1002	then
[251]	1003	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	1004	else
[503]	1005
	1006	if [[ "$host" != $localhost ]]
	1007	then
	1008
	1009	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	1010	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	1011	if [[ $? != 0 ]]
	1012	then
	1013	printf "\n\n +++ no interpret_config found"
	1014	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	1015	locat=interpret_config; exit
	1016	fi
	1017	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	1018	$interpret_config_executable
	1019
	1020	else
	1021
	1022	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1023	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1024	then
	1025	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1026	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1027	locat=interpret_config; exit
	1028	else
	1029	interpret_config${block}.x
	1030	fi
	1031
	1032	fi
[66]	1033	fi
[71]	1034	rm .mrun_environment
[1]	1035
[71]	1036
[1]	1037	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1038	chmod u+x $interpreted_config_file
	1039	export PATH=$PATH:.
	1040	. $interpreted_config_file
[71]	1041	rm $interpreted_config_file
[1]	1042
[71]	1043
[69]	1044	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[759]	1045	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1046	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[759]	1047	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1048	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
	1049	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
	1050	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
[69]	1051
[1]	1052	fi
	1053
	1054
	1055	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1056	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1057	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1058	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1059	if [[ "$SOURCES_COMPLETE" = "" ]]
	1060	then
	1061
	1062	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1063	# VEREINBART WURDE
	1064	source_path=""
	1065	line=""
	1066	grep "%source_path" $config_file > tmp_mrun
	1067	while read line
	1068	do
	1069	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1070	then
	1071	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1072	then
	1073	global_source_path=`echo $line \| cut -d" " -f2`
	1074	fi
	1075	fi
	1076	done < tmp_mrun
	1077
	1078	line=""
	1079	found=false
	1080	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1081	while read line
	1082	do
	1083	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1084	then
	1085	if [[ $found = true ]]
	1086	then
	1087	printf "\n\n +++ more than one source path found in configuration file"
	1088	printf "\n for local host \"$localhost\" "
	1089	locat=source_path; exit
	1090	fi
	1091	source_path=`echo $line \| cut -d" " -f2`
	1092	found=true
	1093	fi
	1094	done < tmp_mrun
	1095	rm tmp_mrun
	1096
	1097	if [[ "$source_path" = "" ]]
	1098	then
	1099	if [[ "$global_source_path" != "" ]]
	1100	then
	1101	source_path=$global_source_path
	1102	else
	1103	printf "\n\n +++ no source path found in configuration file"
	1104	printf "\n for local host \"$localhost\" "
	1105	locat=source_path; exit
	1106	fi
	1107	fi
	1108	eval source_path=$source_path
	1109
	1110	if [[ ! -d $source_path ]]
	1111	then
	1112	printf "\n\n +++ source path \"$source_path\" on local host"
	1113	printf "\n \"$localhost\" does not exist"
	1114	locat=source_path; exit
	1115	fi
	1116
	1117	fi
	1118
	1119
[78]	1120	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1121	# DURCH OPTION -G MITGETEILT)
[693]	1122	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
[78]	1123	then
	1124	global_revision=`svnversion $source_path 2>/dev/null`
	1125	global_revision="Rev: $global_revision"
	1126	fi
[1]	1127
[78]	1128
[1]	1129	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1130	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1131	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1132	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1133	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1134	if [[ -n $host && "$host" != $localhost ]]
	1135	then
	1136	do_batch=true
	1137	do_remote=true
	1138	case $host in
[717]	1139	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
[1]	1140	(*) printf "\n"
[83]	1141	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1142	printf "\n is not available"
[1]	1143	locat=nqs; (( iec = 0 )); exit;;
	1144	esac
	1145	else
	1146	host=$localhost
	1147	fi
	1148
	1149
	1150	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1151	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1152	then
	1153
	1154	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1155	if [[ ! -n $numprocs ]]
	1156	then
	1157	printf "\n"
	1158	printf "\n +++ option \"-K parallel\" requires additional specification"
	1159	printf "\n of the number of processors to be used by"
	1160	printf "\n mrun-option \"-X\" or by environment-variable"
	1161	printf "\n \"numprocs\" in the configuration file"
	1162	locat=numprocs; (( iec = 0 )); exit
	1163	fi
	1164
	1165	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1166	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1167	# GESAMTPROZESSORANZAHL IST
[759]	1168	if [[ "$tasks_per_node" = "" ]]
[1]	1169	then
[759]	1170	printf "\n"
	1171	printf "\n +++ option \"-T\" (tasks per node) is missing"
	1172	printf "\n set -T option or define tasks_per_node in the config file"
	1173	locat=tasks_per_node; (( iec = 0 )); exit
	1174	fi
	1175	(( ival = $tasks_per_node ))
	1176	(( pes = numprocs ))
[1]	1177	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1178	# then
	1179	# (( pes = pes - 1 ))
	1180	# fi
[759]	1181	(( ii = pes / ival ))
	1182	if (( pes - ii * ival > 0 ))
	1183	then
	1184	printf "\n"
	1185	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1186	printf "\n divisor of the total number of processors (option \"-X\")"
	1187	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1188	locat=tasks_per_node; (( iec = 0 )); exit
[1]	1189	fi
	1190
[759]	1191
[1]	1192	# IBMY HAT NUR EINEN KNOTEN
	1193	if [[ $host = ibmy ]]
	1194	then
	1195	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1196	then
	1197	printf "\n"
	1198	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1199	printf "\n total number of processors (option \"-X\")"
	1200	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1201	locat=tasks_per_node; (( iec = 0 )); exit
	1202	fi
	1203	fi
	1204
[377]	1205
	1206	# SETTINGS FOR SUBJOB-COMMAND
[622]	1207	TOPT="-T $tasks_per_node"
[1]	1208	OOPT="-O $threads_per_task"
	1209
	1210	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1211	if [[ "$tasks_per_node" != "" ]]
	1212	then
	1213	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1214	fi
	1215
	1216	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1217	# SETZEN
	1218	if [[ $node_usage = default ]]
	1219	then
	1220	if [[ $host = ibms ]]
	1221	then
	1222	node_usage=shared
[181]	1223	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1224	then
	1225	node_usage=singlejob
[1]	1226	else
	1227	node_usage=not_shared
	1228	fi
	1229	fi
[181]	1230
[635]	1231	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
[1]	1232	then
	1233	printf "\n"
	1234	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1235	printf "\n \"shared\" or \"not_shared\""
	1236	locat=tasks_per_node; (( iec = 0 )); exit
	1237	fi
	1238
	1239	fi
	1240
	1241	# PRUEFEN, OB HOSTFILE EXISTIERT
	1242	if [[ -n $hostfile ]]
	1243	then
	1244	if [[ ! -f $hostfile ]]
	1245	then
	1246	printf "\n"
	1247	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1248	locat=hostfile; exit
	1249	fi
	1250	fi
	1251
	1252	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1253	if [[ $host = ibmy && $do_remote = false ]]
	1254	then
	1255	if [[ ! -f $HOME/.rhosts ]]
	1256	then
	1257	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1258	printf "\n\n *** file:"
	1259	printf "\n $HOME/.rhosts"
	1260	printf "\n was created\n"
	1261	fi
	1262	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1263	then
	1264	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1265	printf "\n\n *** file:"
	1266	printf "\n $HOME/.rhosts"
	1267	printf "\n was extended by the name of the current host\n"
	1268	fi
	1269	fi
	1270
	1271
[759]	1272	# Set default value for the maximum number of parallel io streams
	1273	if [[ "$maximum_parallel_io_streams" = "" ]]
	1274	then
	1275	maximum_parallel_io_streams=$numprocs
	1276	fi
[1]	1277
[759]	1278
[1]	1279	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1280	if [[ $queue = none ]]
	1281	then
	1282	case $host in
[312]	1283	(ibmh) queue=no_class;;
[693]	1284	(ibmkisti) queue=class.32plus;;
[1]	1285	(ibmy) queue=parallel;;
[440]	1286	(lckyoto) queue=ph;;
[191]	1287	(lcsgib) queue=bigq;;
	1288	(lcsgih) queue=bigq;;
[635]	1289	(lctit) queue=S;;
[1]	1290	(nech) queue=none;;
[253]	1291	(necriam) queue=SP;;
[1]	1292	(unics) queue=unics;;
	1293	esac
	1294	fi
	1295
	1296
	1297	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1298	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1299	# ERMITTELN
	1300	(( i = 0 ))
	1301	while (( i < iin ))
	1302	do
	1303	(( i = i + 1 ))
	1304	(( maxcycle = 0 ))
	1305
	1306	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1307	if [[ "${actionin[$i]}" = di ]]
	1308	then
	1309	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1310	# REM-MASCHINE AUSWERTEN
	1311	eval filename=${pathin[$i]}/${endin[$i]}
	1312	else
	1313	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1314	# REM-MASCHINE AUSWERTEN
	1315	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1316	fi
	1317
	1318	# PRUEFEN AUF VORHANDENSEIN
	1319	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1320	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1321	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1322	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1323	then
	1324	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1325	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1326	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1327	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1328	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1329	if [[ "${transin[$i]}" != "locopt" ]]
	1330	then
	1331	printf "\n\n +++ INPUT-file: "
	1332	if [[ "${extin[$i]}" = "" ]]
	1333	then
	1334	printf "\n $filename"
	1335	else
	1336	printf "\n $filename.${extin[$i]}"
	1337	fi
	1338	printf "\n does not exist\n"
	1339	locat=input; exit
	1340	else
	1341	transin[$i]="unavailable"
	1342	fi
	1343	else
	1344
	1345	# ZYKLUSNUMMER FESTSTELLEN
	1346	ls -1 -d $filename > filelist 2>/dev/null
	1347	ls -1 -d $filename.* >> filelist 2>/dev/null
	1348	while read zeile
	1349	do
	1350	cycle=$(print $zeile \| cut -f2 -d".")
	1351	if [[ "$cycle" = "$zeile" ]]
	1352	then
	1353	(( icycle = 0 ))
	1354	elif [[ "$cycle" = "${extin[$i]}" ]]
	1355	then
	1356	(( icycle = 0 ))
	1357	else
	1358	(( icycle = $cycle ))
	1359	fi
	1360	if (( icycle > maxcycle ))
	1361	then
	1362	(( maxcycle = icycle ))
	1363	file_to_be_used=$zeile
	1364	fi
	1365	done <filelist
	1366	rm filelist
	1367
	1368	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1369	if (( maxcycle > 0 ))
	1370	then
	1371	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1372	then
	1373	filename=${filename}.$maxcycle.${extin[$i]}
	1374	else
	1375	filename=${filename}.$maxcycle
	1376	fi
	1377	else
	1378	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1379	then
	1380	filename=${filename}.${extin[$i]}
	1381	fi
	1382	fi
	1383
	1384	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1385	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1386	absnamein[$i]=$filename
	1387	if (( maxcycle > 0 ))
	1388	then
	1389	if [[ "${actionin[$i]}" = di ]]
	1390	then
	1391	frelin[$i]=${endin[$i]}.$maxcycle
	1392	else
	1393	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1394	fi
	1395	else
	1396	if [[ "${actionin[$i]}" = di ]]
	1397	then
	1398	frelin[$i]=${endin[$i]}
	1399	else
	1400	frelin[$i]=${afname}${endin[$i]}
	1401	fi
	1402	fi
	1403
	1404	fi
	1405	done
	1406
	1407
	1408	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1409	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1410	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1411	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1412	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1413	(( i = 0 ))
	1414	while (( i < iout ))
	1415	do
	1416	(( i = i + 1 ))
	1417	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1418	then
[260]	1419	if [[ "${actionout[$i]}" = tr ]]
[1]	1420	then
	1421	actionout[$i]=""
[260]	1422	elif [[ "${actionout[$i]}" = trpe ]]
	1423	then
	1424	actionout[$i]=pe
[1]	1425	elif [[ "${actionout[$i]}" = tra ]]
	1426	then
	1427	actionout[$i]=a
	1428	fi
	1429	(( maxcycle = 0 ))
	1430	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1431	eval catalogname=${pathout[$i]}
	1432	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
[746]	1433	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
[1]	1434	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1435	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1436	then
	1437
	1438	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1439	if cat /dev/null > $filename
	1440	then
	1441	rm $filename
	1442	else
	1443
	1444	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1445	if [[ ! -d $catalogname ]]
	1446	then
	1447	if mkdir -p $catalogname
	1448	then
	1449	printf "\n\n *** directory:"
	1450	printf "\n $catalogname"
	1451	printf "\n was created\n"
	1452	else
	1453	printf "\n\n +++ OUTPUT-file:"
	1454	printf "\n $filename"
	1455	printf "\n cannot be created, because directory does not exist"
	1456	printf "\n and cannot be created either"
	1457	printf "\n"
	1458	locat=output ; exit
	1459	fi 2>/dev/null
	1460	else
	1461	printf "\n\n +++ OUTPUT-file:"
	1462	printf "\n $filename"
	1463	printf "\n cannot be created, although directory exists"
	1464	printf "\n"
	1465	locat=output ; exit
	1466	fi
	1467	fi 2>/dev/null
	1468	else
	1469
	1470	# ZYKLUSNUMMER FESTSTELLEN
	1471	ls -1 -d $filename > filelist 2>/dev/null
	1472	ls -1 -d $filename.* >> filelist 2>/dev/null
	1473	while read zeile
	1474	do
	1475	cycle=$(print $zeile \| cut -f2 -d".")
	1476	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1477	then
	1478	(( icycle = 1 ))
	1479	else
	1480	(( icycle = $cycle + 1 ))
	1481	fi
	1482	if (( icycle > maxcycle ))
	1483	then
	1484	(( maxcycle = icycle ))
	1485	fi
	1486	done <filelist
	1487	rm filelist
	1488	fi
	1489
	1490	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1491	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1492	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1493	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1494	if [[ "${actionout[$i]}" != a ]]
	1495	then
	1496	if (( maxcycle > 0 ))
	1497	then
	1498	filename=${filename}.$maxcycle
	1499	if cat /dev/null > $filename
	1500	then
	1501	rm $filename
	1502	else
	1503	printf "\n +++ OUTPUT-file:"
	1504	printf "\n $filename"
	1505	printf "\n cannot be created"
	1506	locat=output ; exit
	1507	fi
	1508	fi
	1509	else
	1510	(( maxcycle = maxcycle - 1 ))
	1511	if (( maxcycle > 0 ))
	1512	then
	1513	filename=${filename}.$maxcycle
	1514	fi
	1515	fi
	1516
	1517	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1518	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1519	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1520	pathout[$i]=$filename
	1521	if (( maxcycle > 0 ))
	1522	then
	1523	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1524	else
	1525	frelout[$i]=${fname}${endout[$i]}
	1526	fi
	1527
	1528	fi
	1529	done
	1530
	1531
[260]	1532	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1533	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1534	then
[260]	1535	if [[ "$dvr_inc" = "" ]]
[83]	1536	then
[260]	1537	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1538	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1539	locat=dvr; exit
[83]	1540	fi
[260]	1541	if [[ "$dvr_lib" = "" ]]
[83]	1542	then
[260]	1543	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1544	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1545	locat=dvr; exit
[83]	1546	fi
	1547	fi
	1548
	1549
[1]	1550	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1551	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1552	# UEBERSETZT ZU WERDEN)
	1553	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1554	then
	1555	printf "\n +++ neither main program nor executable defined"
	1556	locat=source; exit
	1557	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1558	then
	1559	printf "\n +++ main program as well as executable defined"
	1560	locat=source; exit
	1561	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1562	then
	1563	do_compile=false
	1564	fi
	1565
	1566
[191]	1567	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1568	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1569	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1570	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1571	then
	1572	rm -rf SOURCES_FOR_RUN_$fname
	1573	mkdir SOURCES_FOR_RUN_$fname
	1574	fi
	1575
	1576
[1]	1577	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1578	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1579	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1580	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1581	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1582	then
	1583
[5]	1584	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1585	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1586
	1587
	1588	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1589	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1590	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1591	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1592	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1593	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1594	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1595	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1596	# GESAMMELT
[5]	1597	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1598	then
	1599
	1600	source_list=""
	1601	cd $source_path
	1602
	1603
	1604	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1605	Names=$(ls -1 *.f90 2>&1)
	1606	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1607	Names=$(ls -1 *.F90 2>&1)
	1608	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1609	Names=$(ls -1 *.F 2>&1)
	1610	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1611	Names=$(ls -1 *.f 2>&1)
	1612	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1613	Names=$(ls -1 *.c 2>&1)
	1614	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1615
	1616
	1617	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1618	for dateiname in $Filenames
	1619	do
	1620	if [[ -w $dateiname ]]
	1621	then
	1622	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1623	then
	1624	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1625	source_list=$source_list"$dateiname "
	1626	fi
	1627	fi
	1628	done
	1629
	1630	cd - > /dev/null
	1631
	1632
[5]	1633	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1634	then
	1635
	1636	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1637	source_list=""
	1638	cd $source_path
	1639
	1640
	1641	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1642	if [[ ! -d .svn ]]
	1643	then
	1644	printf "\n\n +++ source directory"
	1645	printf "\n \"$source_path\" "
	1646	printf "\n is not under control of \"subversion\"."
[306]	1647	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1648	fi
	1649
	1650
	1651	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1652	Filenames=""
[69]	1653	svn status > tmp_mrun
	1654	while read line
[5]	1655	do
	1656	firstc=`echo $line \| cut -c1`
	1657	if [[ $firstc = M \|\| $firstc = "?" ]]
	1658	then
	1659	Name=`echo "$line" \| cut -c8-`
	1660	extension=`echo $Name \| cut -d. -f2`
	1661	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1662	then
	1663	Filenames="$Filenames "$Name
	1664	fi
	1665	fi
[69]	1666	done < tmp_mrun
[5]	1667
	1668
	1669	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1670	for dateiname in $Filenames
	1671	do
	1672	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1673	source_list=$source_list"$dateiname "
	1674	done
	1675
	1676	cd - > /dev/null
	1677
	1678
[1]	1679	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1680	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1681	# VORHANDEN
[5]	1682	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1683	then
	1684
	1685	cd $source_path
	1686
	1687	for filename in $source_list
	1688	do
	1689
	1690	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1691	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1692	then
	1693	printf "\n +++ source code file: $filename"
	1694	printf "\n must not contain (\"/\") "
	1695	locat=source; exit
	1696	fi
	1697
	1698	if [[ ! -f $filename ]]
	1699	then
	1700	printf "\n +++ source code file: $filename"
	1701	printf "\n does not exist"
	1702	locat=source; exit
	1703	else
	1704	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1705	fi
	1706
	1707	done
	1708
	1709	cd - > /dev/null
	1710
	1711	fi
	1712
	1713
	1714	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1715	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1716	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1717	if [[ $restart_run != true ]]
[1]	1718	then
	1719
	1720	if [[ ! -f "$source_path/$mainprog" ]]
	1721	then
	1722	printf "\n\n +++ main program: $mainprog"
	1723	printf "\n does not exist in source directory"
	1724	printf "\n \"$source_path\"\n"
	1725	locat=source; exit
	1726	else
	1727	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1728	then
	1729	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1730	source_list=${mainprog}" $source_list"
	1731	fi
	1732	fi
	1733	fi
	1734
	1735
[211]	1736	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1737	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1738	if [[ "$restart_run" != true ]]
	1739	then
	1740	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1741	if [[ ! -f $makefile ]]
	1742	then
	1743	printf "\n +++ file \"$makefile\" does not exist"
	1744	locat=make; exit
	1745	else
	1746	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1747	fi
	1748	fi
	1749
	1750
[1]	1751	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1752	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1753	then
	1754
	1755	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1756	if [[ ! -d $add_source_path ]]
	1757	then
	1758	printf "\n\n +++ WARNING: additional source code directory"
	1759	printf "\n \"$add_source_path\" "
	1760	printf "\n does not exist or is not a directory."
	1761	printf "\n No source code will be used from this directory!\n"
	1762	add_source_path=""
	1763	sleep 3
	1764	else
	1765
	1766	cd $add_source_path
[211]	1767	found=false
[1]	1768
	1769	Names=$(ls -1 *.f90 2>&1)
	1770	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1771	Names=$(ls -1 *.F90 2>&1)
	1772	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1773	Names=$(ls -1 *.F 2>&1)
	1774	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1775	Names=$(ls -1 *.f 2>&1)
	1776	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1777	Names=$(ls -1 *.c 2>&1)
	1778	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1779
	1780	cd - > /dev/null
	1781	cd SOURCES_FOR_RUN_$fname
	1782
[211]	1783	# COPY MAKEFILE IF EXISTING
	1784	if [[ -f $add_source_path/Makefile ]]
	1785	then
	1786	printf "\n\n *** user Makefile from directory"
	1787	printf "\n \"$add_source_path\" is used \n"
	1788	sleep 1
	1789	cp $add_source_path/Makefile .
	1790	fi
	1791
[1]	1792	for dateiname in $AddFilenames
	1793	do
	1794	if [[ -f $dateiname ]]
	1795	then
	1796	printf "\n +++ source code file \"$dateiname\" found in additional"
	1797	printf "\n source code directory \"$add_source_path\" "
[211]	1798	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1799	printf "\n from directory \"$source_path\"."
[1]	1800	locat=source; exit
	1801	fi
	1802
	1803	cp $add_source_path/$dateiname .
	1804	source_list="$source_list $dateiname"
	1805
[211]	1806	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1807	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1808	then
	1809	printf "\n\n +++ user file \"$dateiname\" "
	1810	printf "\n is not listed in Makefile \n"
	1811	locat=source; exit
	1812	else
	1813
[1]	1814	# Default User-Interface von der Liste entfernen, falls Datei
	1815	# ein User-Interface enthaelt
[211]	1816	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1817	# then
	1818	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1819	# then
	1820	# rm -rf user_interface.f90
	1821	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1822	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1823	# printf "\n since a user-interface is found in file"
	1824	# printf "\n \"$add_source_path/$dateiname\" \n"
	1825	# sleep 3
	1826	# else
	1827	if [[ $found = false ]]
[1]	1828	then
[211]	1829	found=true
	1830	printf "\n\n *** following user file(s) added to the"
	1831	printf " files to be translated:\n "
[1]	1832	fi
[211]	1833	printf "$dateiname "
	1834	sleep 0.5
[1]	1835	fi
	1836	done
[211]	1837	[[ $found = true ]] && printf "\n"
[1]	1838	cd - > /dev/null
	1839	fi
	1840	fi
	1841
	1842
	1843	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1844	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1845	if [[ $restart_run != true && -n $package_list ]]
[1]	1846	then
	1847
	1848	cd $source_path
	1849
	1850	for package in $package_list
	1851	do
	1852
	1853	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1854
	1855	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1856	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1857	# LIEFERT
	1858	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1859
	1860
	1861	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1862	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1863	for source_list_name in $package_source_list
	1864	do
	1865	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1866	then
	1867
	1868	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1869	ending=`echo $source_list_name \| cut -f2 -d.`
	1870	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1871	then
	1872	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1873	source_list="$source_list $source_list_name"
	1874	fi
	1875	fi
	1876	done
	1877	done
	1878
	1879	cd - > /dev/null
	1880	fi
	1881
	1882
	1883	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1884	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1885	# if [[ "$restart_run" != true ]]
	1886	# then
	1887	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1888	# if [[ ! -f $makefile ]]
	1889	# then
	1890	# printf "\n +++ file \"$makefile\" does not exist"
	1891	# locat=make; exit
	1892	# else
	1893	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1894	# fi
	1895	# fi
[1]	1896
	1897	fi # do_compile=true
	1898
	1899
	1900	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1901	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1902	if [[ $do_compile = true ]]
	1903	then
	1904
	1905	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1906	# ZUSAMMENSETZEN
[83]	1907	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1908	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1909	then
[82]	1910	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1911	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1912	then
[82]	1913	cpp_options="$cpp_options -D__nec"
	1914	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1915	then
	1916	cpp_options="$cpp_options -D__lc"
[1]	1917	else
[82]	1918	cpp_options="$cpp_options -D__$localhost"
[1]	1919	fi
[83]	1920
	1921	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1922	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1923	then
[82]	1924	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1925	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1926	else
[82]	1927	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1928	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1929	fi
[83]	1930
	1931	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1932	if [[ -n $package_list ]]
	1933	then
	1934	for package in $package_list
	1935	do
	1936	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1937	then
	1938	if [[ $package != "dvrp_graphics+1PE" ]]
	1939	then
[82]	1940	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1941	else
[82]	1942	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1943	export use_seperate_pe_for_dvrp_output=true
	1944	fi
	1945	else
	1946	if [[ $package != "dvrp_graphics+1PE" ]]
	1947	then
[82]	1948	cpp_options="$cpp_options -D__$package"
[1]	1949	else
[82]	1950	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1951	export use_seperate_pe_for_dvrp_output=true
	1952	fi
	1953	fi
	1954	done
	1955	fi
[83]	1956
	1957	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1958	if [[ -n $cpp_opts ]]
	1959	then
	1960	for popts in $cpp_opts
	1961	do
[82]	1962	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1963	then
	1964	cpp_options="${cpp_options},-D__$popts=__$popts"
	1965	else
	1966	cpp_options="$cpp_options -D__$popts"
	1967	fi
[1]	1968	done
	1969	fi
	1970
	1971	else
	1972
	1973
	1974	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1975	if [[ $do_remote = false ]]
	1976	then
	1977	if [[ ! -f $executable ]]
	1978	then
	1979	printf "\n +++ executable file: $executable"
	1980	printf "\n does not exist"
	1981	locat=executable; exit
	1982	fi
	1983	fi
	1984	fi
	1985
	1986
	1987	# JOBMODUS FESTSTELLEN
[635]	1988	if [[ "$ENVIRONMENT" = BATCH ]]
[1]	1989	then
	1990	jobmo=BATCH
	1991	else
	1992	jobmo=INTERACTIVE
	1993	fi
	1994
	1995
[635]	1996	# no interactive runs on lctit
	1997	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
	1998	then
	1999	printf "\n +++ no interactive runs allowed on host \"$host\" "
	2000	printf "\n please submit batch job using mrun option \"-b\" \n"
	2001	locat=normal; exit
	2002	fi
	2003
	2004
[1]	2005	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	2006	# DURCH BENUTZER ANDERWEITIG VEREINBART
	2007	if [[ "$compiler_name" = "" ]]
	2008	then
[82]	2009
[220]	2010	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	2011	locat=compiler_name; exit
	2012
[1]	2013	fi
	2014
	2015
[251]	2016	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	2017	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	2018
	2019
	2020
	2021	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	2022	kennung=$RANDOM
	2023	if [[ "$tmp_user_catalog" = "" ]]
	2024	then
[312]	2025	if [[ $localhost = ibmh ]]
[1]	2026	then
[312]	2027	tmp_user_catalog=$SCRATCH
[1]	2028	elif [[ $localhost = nech ]]
	2029	then
	2030	tmp_user_catalog=$WRKSHR
	2031	else
	2032	tmp_user_catalog=/tmp
	2033	fi
	2034	fi
	2035	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2036
	2037
	2038	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2039	# BESTIMMEN
	2040	if [[ "$tmp_data_catalog" = "" ]]
	2041	then
[622]	2042	if [[ $localhost = nech ]]
[1]	2043	then
	2044	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2045	else
	2046	tmp_data_catalog=/tmp/mrun_restart_data
	2047	fi
	2048	fi
	2049
	2050
	2051	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2052	# ERSETZEN
	2053	if [[ $do_remote = false && $do_compile = true ]]
	2054	then
	2055	eval fopts=\"$fopts\"
	2056	eval lopts=\"$lopts\"
	2057	fi
	2058
	2059
	2060
	2061	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2062	fopts="$fopts $netcdf_inc $dvr_inc"
	2063	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2064	ROPTS="$ropts"
[717]	2065	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
[1]	2066	then
	2067	XOPT="-X $numprocs"
	2068	fi
	2069
	2070
	2071
	2072	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2073	# GRAMM BENOETIGT
	2074	done=false
	2075	while [[ $done = false ]]
	2076	do
	2077	cputime=$cpumax
	2078	if (( $cputime == 0 ))
	2079	then
[246]	2080	if [[ $do_batch = true ]]
	2081	then
	2082	printf "\n +++ cpu-time is undefined"
	2083	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2084	printf "\n >>> "
	2085	read cputime 1>/dev/null 2>&1
	2086	else
	2087	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2088	fi
[1]	2089	else
	2090	done=true
	2091	fi
	2092	cpumax=$cputime
	2093	done
	2094
	2095	(( minuten = cputime / 60 ))
	2096	(( sekunden = cputime - minuten * 60 ))
	2097
	2098
	2099	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2100	if [[ $do_batch = true ]]
	2101	then
	2102	done=false
	2103	while [[ $done = false ]]
	2104	do
	2105	if (( memory == 0 ))
	2106	then
	2107	printf "\n +++ memory demand is undefined"
	2108	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2109	printf "\n >>> "
	2110	read memory 1>/dev/null 2>&1
	2111	else
	2112	done=true
	2113	fi
	2114	done
	2115	fi
	2116
	2117
	2118	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2119	if [[ $do_remote = true && -z $remote_username ]]
	2120	then
	2121	while [[ -z $remote_username ]]
	2122	do
	2123	printf "\n +++ username on remote host \"$host\" is undefined"
	2124	printf "\n >>> Please type username:"
	2125	printf "\n >>> "
	2126	read remote_username
	2127	done
	2128	mc="$mc -u$remote_username"
	2129	fi
	2130
[221]	2131
[493]	2132	# set module load command and export for subjob
	2133	if [[ "$modules" != "" ]]
	2134	then
[678]	2135	if [[ $host = lctit ]]
	2136	then
	2137	export module_calls=". $modules"
	2138	else
	2139	export module_calls="module load ${modules};"
	2140	fi
[493]	2141	fi
	2142
[683]	2143	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
[562]	2144	if [[ $host = lcsgib \|\| $host = lcsgih ]]
[555]	2145	then
	2146	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
	2147	then
[562]	2148	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
[555]	2149	fi
[721]	2150	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
	2151	# then
	2152	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
	2153	# echo "*** module_calls = $module_calls"
	2154	# fi
[555]	2155	fi
[493]	2156
[555]	2157
[221]	2158	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2159	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2160	then
[493]	2161	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2162	then
	2163	mpilib=mpt
	2164	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2165	then
	2166	mpilib=mvapich
[738]	2167	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
	2168	then
	2169	mpilib=impi
[493]	2170	fi
[221]	2171	fi
	2172
	2173
	2174
[1]	2175	###########################################################################
	2176	# HEADER-AUSGABE
	2177	###########################################################################
	2178
	2179
	2180	calltime=$(date)
	2181	printf "\n"
	2182	# [[ $silent = false ]] && clear
	2183	printf "#--------------------------------------------------------------# \n"
	2184	printf "\| $version$calltime \| \n"
	2185	printf "\| \| \n"
	2186	spalte1="called on:"; spalte2=$localhost_realname
	2187	printf "\| $spalte1$spalte2 \| \n"
	2188	if [[ $local_compile = false ]]
	2189	then
	2190	if [[ $do_remote = true ]]
	2191	then
	2192	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2193	else
	2194	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2195	fi
	2196	else
	2197	spalte1="compiling test only!"; spalte2=""
	2198	fi
	2199	printf "\| $spalte1$spalte2 \| \n"
	2200	if [[ -n $numprocs ]]
	2201	then
	2202	spalte1="number of PEs:"; spalte2=$numprocs
	2203	printf "\| $spalte1$spalte2 \| \n"
	2204	fi
	2205	if [[ -n $tasks_per_node ]]
	2206	then
	2207	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2208	printf "\| $spalte1$spalte2 \| \n"
	2209	fi
[759]	2210	if [[ $maximum_parallel_io_streams != $numprocs ]]
	2211	then
	2212	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
	2213	printf "\| $spalte1$spalte2 \| \n"
	2214	fi
[622]	2215	if [[ $use_openmp = true ]]
[1]	2216	then
	2217	spalte1="threads per task:"; spalte2="$threads_per_task"
	2218	printf "\| $spalte1$spalte2 \| \n"
	2219	fi
	2220	printf "\| \| \n"
	2221	if [[ $do_compile = true ]]
	2222	then
[475]	2223	if [[ "$mopts" != "" ]]
	2224	then
[493]	2225	spalte1="make options:"; spalte2=$mopts
[475]	2226	printf "\| $spalte1$spalte2 \| \n"
	2227	zeile=$(echo "$mopts" \| cut -c41-)
	2228	while [[ "$zeile" != "" ]]
	2229	do
	2230	spalte1=""
	2231	spalte2=$zeile
	2232	printf "\| $spalte1$spalte2 \| \n"
	2233	zeile=$(echo "$zeile" \| cut -c41-)
	2234	done
	2235	fi
	2236
[493]	2237	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2238	printf "\| $spalte1$spalte2 \| \n"
[82]	2239	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2240	while [[ "$zeile" != "" ]]
	2241	do
	2242	spalte1=""
	2243	spalte2=$zeile
	2244	printf "\| $spalte1$spalte2 \| \n"
	2245	zeile=$(echo "$zeile" \| cut -c41-)
	2246	done
	2247
[493]	2248	spalte1="compiler options:"; spalte2="$fopts"
[1]	2249	printf "\| $spalte1$spalte2 \| \n"
[82]	2250	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2251	while [[ "$zeile" != "" ]]
	2252	do
	2253	spalte1=""
	2254	spalte2=$zeile
	2255	printf "\| $spalte1$spalte2 \| \n"
	2256	zeile=$(echo "$zeile" \| cut -c41-)
	2257	done
	2258
[493]	2259	spalte1="linker options:"; spalte2=$lopts
[1]	2260	printf "\| $spalte1$spalte2 \| \n"
[82]	2261	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2262	while [[ "$zeile" != "" ]]
	2263	do
	2264	spalte1=""
	2265	spalte2=$zeile
	2266	printf "\| $spalte1$spalte2 \| \n"
	2267	zeile=$(echo "$zeile" \| cut -c41-)
	2268	done
	2269
[493]	2270	spalte1="modules to be load:"; spalte2=$modules
	2271	printf "\| $spalte1$spalte2 \| \n"
	2272	zeile=$(echo "$modules" \| cut -c41-)
	2273	while [[ "$zeile" != "" ]]
	2274	do
	2275	spalte1=""
	2276	spalte2=$zeile
	2277	printf "\| $spalte1$spalte2 \| \n"
	2278	zeile=$(echo "$zeile" \| cut -c41-)
	2279	done
	2280
[1]	2281	spalte1="main program":; spalte2=$mainprog
	2282	printf "\| $spalte1$spalte2 \| \n"
	2283	else
	2284	spalte1=executable:; spalte2=$executable
	2285	printf "\| $spalte1$spalte2 \| \n"
	2286	fi
	2287	printf "\| \| \n"
	2288	spalte1="base name of files":; spalte2=$fname
	2289	printf "\| $spalte1$spalte2 \| \n"
	2290	if [[ $fname != $afname ]]
	2291	then
	2292	spalte1="base name of input files":; spalte2=$afname
	2293	printf "\| $spalte1$spalte2 \| \n"
	2294	fi
	2295	spalte1="INPUT control list":; spalte2=$input_list
	2296	printf "\| $spalte1$spalte2 \| \n"
	2297	spalte1="OUTPUT control list":; spalte2=$output_list
	2298	printf "\| $spalte1$spalte2 \| \n"
	2299
	2300	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2301	then
	2302	spalte1="memory demand / PE":; spalte2="$memory MB"
	2303	printf "\| $spalte1$spalte2 \| \n"
	2304	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2305	printf "\| $spalte1$spalte2 \| \n"
	2306	fi
	2307
	2308	if [[ $do_compile = true ]]
	2309	then
	2310	printf "\| \| \n"
	2311	printf "\| Files to be compiled: \| \n"
	2312	zeile=$source_list
	2313	while [[ "$zeile" != "" ]]
	2314	do
	2315	spalte3=$zeile
	2316	printf "\| $spalte3 \| \n"
	2317	zeile=$(echo "$zeile" \| cut -c61-)
	2318	done
	2319	fi
	2320	printf "#--------------------------------------------------------------#"
	2321
	2322
	2323
	2324	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2325	if [[ $do_trace = true ]]
	2326	then
	2327	(( i = 0 ))
	2328	while (( i < iin ))
	2329	do
	2330	(( i = i + 1 ))
	2331	if (( i == 1 ))
	2332	then
	2333	printf "\n\n >>> INPUT-file assignments:\n"
	2334	fi
	2335	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2336	done
	2337	(( i = 0 ))
	2338	while (( i < iout ))
	2339	do
	2340	(( i = i + 1 ))
	2341	if (( i == 1 ))
	2342	then
	2343	printf "\n\n >>> OUTPUT-file assignments:\n"
	2344	fi
	2345	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2346	done
	2347	(( i = 0 ))
	2348	while (( i < iic ))
	2349	do
	2350	(( i = i + 1 ))
	2351	if (( i == 1 ))
	2352	then
	2353	printf "\n\n >>> INPUT-commands:\n"
	2354	fi
	2355	printf "\n ${in_command[$i]}"
	2356	done
	2357	(( i = 0 ))
	2358	while (( i < ioc ))
	2359	do
	2360	(( i = i + 1 ))
	2361	if (( i == 1 ))
	2362	then
	2363	printf "\n\n >>> OUTPUT-commands:\n"
	2364	fi
	2365	printf "\n ${out_command[$i]}"
	2366	done
	2367	fi
	2368
	2369
	2370	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2371	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2372	then
	2373	antwort=dummy
	2374	printf "\n\n"
	2375	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2376	do
	2377	printf " >>> everything o.k. (y/n) ? "
	2378	read antwort
	2379	done
	2380	if [[ $antwort = n \|\| $antwort = N ]]
	2381	then
	2382	locat=user_abort; (( iec = 0 )); exit
	2383	fi
	2384	if [[ $do_batch = true ]]
	2385	then
	2386	printf " >>> batch-job will be created and submitted"
	2387	else
	2388	if [[ $local_compile = false ]]
	2389	then
	2390	printf " >>> MRUN will now continue to execute on this machine"
	2391	else
	2392	printf " >>> a test compilation will now be carried out on this machine"
	2393	fi
	2394	fi
	2395	fi
	2396
	2397
	2398
	2399
	2400	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2401	# CHENDE AKTIONEN DURCHGEFUEHRT
	2402	if [[ $do_batch = false ]]
	2403	then
	2404
	2405
	2406	# TEMPORAEREN KATALOG ERZEUGEN
	2407	mkdir -p $TEMPDIR
	2408	chmod go+rx $TEMPDIR
	2409	tmpcreate=true
	2410
[493]	2411	# set striping on lustre file system
	2412	# if [[ $localhost = lcsgih ]]
	2413	# then
	2414	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2415	# lfs getstripe $TEMPDIR
	2416	# fi
[1]	2417
[493]	2418
[1]	2419	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2420	# TEMPORAERES VERZEICHNIS KOPIEREN
	2421	if [[ $do_compile = true ]]
	2422	then
	2423
	2424	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2425	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2426	if [[ $localhost = nech ]]
	2427	then
	2428	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2429	if mkdir -p $TEMPDIR_COMPILE
	2430	then
	2431	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2432	printf "\n is generated as temporary directory for cross compiling\n"
	2433	else
	2434	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2435	printf "\n needed for cross compilation failed"
	2436	locat=compile
	2437	exit
	2438	fi
	2439	else
	2440	TEMPDIR_COMPILE=$TEMPDIR
	2441	fi
	2442
	2443
[82]	2444	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2445	line=""
	2446	grep "%depository_path" $config_file > tmp_mrun
	2447	while read line
	2448	do
	2449	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2450	then
	2451	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2452	then
[82]	2453	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2454	fi
[82]	2455	fi
	2456	done < tmp_mrun
[1]	2457
[82]	2458	line=""
	2459	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2460	while read line
	2461	do
	2462	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2463	then
[211]	2464	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2465	then
	2466	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2467	fi
[1]	2468	fi
[82]	2469	done < tmp_mrun
[1]	2470
[82]	2471	if [[ "$local_depository_path" = "" ]]
	2472	then
	2473	if [[ "$global_depository_path" != "" ]]
[1]	2474	then
[82]	2475	local_depository_path=$global_depository_path
[1]	2476	else
[82]	2477	printf "\n\n +++ no depository path found in configuration file"
	2478	printf "\n for local host \"$localhost\" "
	2479	printf "\n please set \"\%depository_path\" in configuration file\n"
	2480	locat=config_file; exit
[1]	2481	fi
[82]	2482	fi
	2483	eval local_depository_path=$local_depository_path
[215]	2484	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2485	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2486
[215]	2487
[82]	2488	basename=`print $mainprog \| cut -f1 -d"."`
	2489	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2490	if [[ ! -f $make_depository ]]
	2491	then
	2492	printf "\n"
	2493	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2494	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2495	else
	2496	cp $make_depository $TEMPDIR_COMPILE
[1]	2497	cd $TEMPDIR_COMPILE
[82]	2498	tar -xf $make_depository > /dev/null 2>&1
[1]	2499	cd - > /dev/null
	2500	fi
[82]	2501
	2502	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2503
[1]	2504	else
[475]	2505
[1]	2506	cp $executable ${TEMPDIR}/a.out
[475]	2507
[1]	2508	fi
	2509
	2510
	2511	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2512	cd $TEMPDIR
[1]	2513	printf "\n *** changed to temporary directory: $TEMPDIR"
	2514
	2515
	2516	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2517	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2518	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2519	# ERMITTELN
	2520	(( i = 0 ))
	2521	while (( i < iout ))
	2522	do
	2523	(( i = i + 1 ))
	2524	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2525	then
	2526	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2527	else
	2528	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2529	fi
	2530	done
	2531
	2532
	2533	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2534	if [[ $do_compile = true ]]
	2535	then
	2536
	2537
	2538	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2539	printf "\n\n\n *** compilation starts \n$striche\n"
	2540	printf " *** compilation with make using following options:\n"
[211]	2541	printf " make depository: $make_depository"
[475]	2542	if [[ "$mopts" != "" ]]
	2543	then
	2544	printf " make options: $mopts\n"
	2545	fi
[82]	2546	printf " compilername: $compiler_name\n"
[475]	2547	printf " compiler options: $fopts\n"
[493]	2548	printf " preprocessor directives: $cpp_options \n"
	2549	printf " linker options: $lopts \n"
	2550	if [[ "$modules" != "" ]]
	2551	then
	2552	printf " modules to be load: $modules \n"
	2553	fi
[82]	2554	printf " source code files: $source_list \n"
	2555
	2556	if [[ $localhost = nech ]]
[1]	2557	then
[493]	2558	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2559	cp $TEMPDIR_COMPILE/a.out .
	2560	[[ $? != 0 ]] && compile_error=true
	2561	rm -rf $TEMPDIR_COMPILE
[312]	2562	elif [[ $localhost = ibmh ]]
	2563	then
[325]	2564	printf " compiler is called via ssh on \"plogin1\" \n"
[493]	2565	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2566	[[ ! -f a.out ]] && compile_error=true
	2567	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2568	elif [[ $localhost = lcsgib ]]
	2569	then
[540]	2570	printf " compiler is called via ssh on \"bicegate0\" \n"
	2571	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2572	[[ ! -f a.out ]] && compile_error=true
	2573	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2574	elif [[ $localhost = lcsgih ]]
	2575	then
[738]	2576	printf " compiler is called via ssh on \"hicegate0\" \n"
	2577	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2578	[[ ! -f a.out ]] && compile_error=true
	2579	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[755]	2580	elif [[ $localhost = lcflow ]]
	2581	then
	2582	printf " compiler is called via ssh on \"flow\" \n"
	2583	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2584	[[ ! -f a.out ]] && compile_error=true
	2585	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2586	else
[544]	2587	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
[493]	2588	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2589	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[82]	2590	fi
[1]	2591
	2592	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2593	then
	2594	printf "\n +++ error occured while compiling or linking"
	2595	locat=compile
[181]	2596
[182]	2597	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2598	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2599	# then
[181]	2600	exit
[197]	2601	# else
	2602	# locat=normal
	2603	# fi
[1]	2604	else
	2605	printf "$striche\n *** compilation finished \n"
	2606	fi
	2607	fi
	2608
	2609
	2610	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2611	if [[ $local_compile = true ]]
	2612	then
	2613	cd $HOME
	2614	rm -rf $TEMPDIR
	2615	locat=local_compile; exit
	2616	fi
	2617
	2618
	2619	# BEREITSTELLEN DER INPUT-DATEIEN
	2620	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2621	(( i = 0 ))
	2622	while (( i < iin ))
	2623	do
	2624	(( i = i + 1 ))
	2625	if (( i == 1 ))
	2626	then
	2627	printf "\n\n *** providing INPUT-files:\n$striche"
	2628	fi
	2629
	2630
	2631	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2632	if [[ "${transin[$i]}" = unavailable ]]
	2633	then
	2634	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2635	then
	2636	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2637	printf "\n is not available!"
	2638	else
	2639	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2640	printf "\n is not available!"
	2641	fi
	2642	continue
	2643	fi
	2644
	2645	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2646	files_for_pes=false; datentyp=file
	2647	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2648	then
	2649	files_for_pes=true; datentyp=directory
	2650	actionin[$i]=""
	2651	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2652	then
	2653	actionin[$i]=""
	2654	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2655	then
	2656	files_for_pes=true; datentyp=directory
	2657	actionin[$i]="ar"
	2658	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2659	then
	2660	actionin[$i]="ar"
	2661	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2662	then
	2663	files_for_pes=true; datentyp=directory
	2664	actionin[$i]="fl"
	2665	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2666	then
	2667	actionin[$i]="fl"
	2668	fi
	2669
	2670	if [[ $files_for_pes = true ]]
	2671	then
	2672	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2673	else
	2674	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2675	fi
	2676
	2677	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2678	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2679	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2680	# SERVER ZU HOLEN
	2681	if [[ "${actionin[$i]}" = fl ]]
	2682	then
	2683	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2684	if [[ $files_for_pes = false ]]
	2685	then
	2686	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2687	then
	2688	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2689	got_tmp[$i]=true
	2690	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2691	then
	2692	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2693	printf "\n *** trying to use backup copy in \"$WORK\" "
	2694	cp $WORK/${frelin[$i]} ${localin[$i]}
	2695	else
	2696	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2697	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2698	printf "\n *** trying to get copy from archive"
	2699	actionin[$i]=ar
	2700	fi
	2701	else
	2702	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2703	then
	2704	mkdir ${localin[$i]}
[149]	2705	cd $tmp_data_catalog/${frelin[$i]}
	2706	for file in $(ls *)
	2707	do
	2708	ln $file $TEMPDIR/${localin[$i]}
	2709	done
	2710	cd $TEMPDIR
[1]	2711	got_tmp[$i]=true
	2712	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2713	then
	2714	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2715	printf "\n *** trying to use backup copy in \"$WORK\" "
	2716	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2717	else
	2718	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2719	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2720	printf "\n *** trying to get copy from archive"
	2721	actionin[$i]=ar
	2722	fi
	2723	fi
	2724	fi
	2725
	2726
	2727	# DATEI LIEGT AUF ARCHIV-SERVER
	2728	if [[ "${actionin[$i]}" = ar ]]
	2729	then
	2730
	2731	if [[ $files_for_pes = false ]]
	2732	then
	2733	printf "\n file will be restored from archive-system ($archive_system)!"
	2734	else
	2735	printf "\n directory will be restored from archive-system ($archive_system)!"
	2736	fi
	2737
	2738	file_restored=false
	2739
	2740	if [[ $archive_system = asterix ]]
	2741	then
	2742	do_stagein=true
	2743	(( stagein_anz = 0 ))
	2744	while [[ $do_stagein = true ]]
	2745	do
	2746	if [[ $files_for_pes = false ]]
	2747	then
	2748	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2749	else
	2750	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2751	fi
	2752	cat STAGEIN_OUTPUT
	2753	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2754	then
	2755	file_restored=true
	2756	do_stagein=false
	2757	else
	2758	(( stagein_anz = stagein_anz + 1 ))
	2759	if (( stagein_anz == 10 ))
	2760	then
	2761	printf "\n +++ stagein stoped after 10 tries"
	2762	locat=stage
	2763	exit
	2764	fi
	2765	printf "\n +++ restoring from archive failed, trying again:"
	2766	sleep 900
	2767	fi
	2768	done
	2769	elif [[ $archive_system = DMF ]]
	2770	then
	2771	if [[ $files_for_pes = false ]]
	2772	then
	2773	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2774	locat=DMF
	2775	exit
	2776	else
	2777	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2778	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2779	file_restored=true
	2780	fi
	2781	elif [[ $archive_system = tivoli ]]
	2782	then
	2783	if [[ $files_for_pes = false ]]
	2784	then
[399]	2785	if [[ $localhost = lcsgih ]]
[1]	2786	then
[399]	2787	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2788	else
[399]	2789	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2790	fi
	2791	else
	2792	(( inode = 0 ))
	2793	while (( inode < nodes ))
	2794	do
[399]	2795	if [[ $localhost = lcsgih ]]
[1]	2796	then
[399]	2797	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2798	else
[399]	2799	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2800	fi
	2801	(( inode = inode + 1 ))
	2802	done
	2803	fi
	2804	file_restored=true
	2805	elif [[ $archive_system = ut ]]
	2806	then
	2807	if [[ $files_for_pes = false ]]
	2808	then
	2809	cp $UT/${frelin[$i]} .
	2810	else
	2811	(( inode = 0 ))
	2812	while (( inode < nodes ))
	2813	do
	2814	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2815	(( inode = inode + 1 ))
	2816	done
	2817	fi
	2818	file_restored=true
	2819	else
	2820	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2821	locat=rearchive
	2822	exit
	2823	fi
	2824
	2825	if [[ $file_restored = true ]]
	2826	then
	2827
	2828	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2829	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2830	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2831	if [[ $files_for_pes = false ]]
	2832	then
	2833	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2834	else
	2835	mkdir $tmp_data_catalog/${frelin[$i]}
	2836	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2837	fi
	2838	got_tmp[$i]=true
	2839
	2840	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2841	mv ${frelin[$i]} ${localin[$i]}
	2842
	2843	fi
	2844	fi
	2845
	2846
	2847	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2848	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2849	then
	2850
	2851	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2852	then
	2853
	2854	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2855	printf "\n file will be provided for $numprocs processors"
	2856	mkdir ${localin[$i]}
	2857	ival=$numprocs
	2858	(( ii = 0 ))
	2859	while (( ii <= ival-1 ))
	2860	do
	2861	if (( ii < 10 ))
	2862	then
	2863	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2864	elif (( ii < 100 ))
	2865	then
	2866	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2867	elif (( ii < 1000 ))
	2868	then
	2869	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2870	else
	2871	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2872	fi
	2873	(( ii = ii + 1 ))
	2874	done
	2875
	2876	else
	2877
	2878	if [[ $files_for_pes = true ]]
	2879	then
	2880
	2881	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2882	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2883	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2884	# PER MOVE UMBENANNT WERDEN
	2885	printf "\n providing $numprocs files for the respective processors"
	2886	mkdir ${localin[$i]}
[183]	2887	if [[ $link_local_input = true ]]
	2888	then
	2889	printf " using ln -f\n"
	2890	cd ${absnamein[$i]}
	2891	for file in $(ls *)
	2892	do
	2893	ln -f $file ${localin[$i]}
	2894	done
	2895	cd $TEMPDIR
	2896	fi
	2897	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2898	if [[ ! -f "${localin[$i]}/_0000" ]]
	2899	then
	2900	if [[ $link_local_input = true ]]
	2901	then
	2902	printf " ln failed for .../_0000, using cp...\n"
	2903	fi
	2904	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2905	fi
[1]	2906
	2907	else
	2908	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2909	if [[ $link_local_input = true ]]
	2910	then
	2911	printf " using ln -f\n"
	2912	ln -f ${absnamein[$i]} ${localin[$i]}
	2913	fi
	2914	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2915	if [[ ! -f "${localin[$i]}" ]]
	2916	then
	2917	if [[ $link_local_input = true ]]
	2918	then
	2919	printf " ln failed, using cp...\n"
	2920	fi
	2921	cp ${absnamein[$i]} ${localin[$i]}
	2922	fi
[1]	2923	fi
	2924	fi
	2925	fi
	2926
	2927	done
	2928	if (( i != 0 ))
	2929	then
	2930	printf "\n$striche\n *** all INPUT-files provided \n"
	2931	fi
	2932
	2933
	2934	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2935	(( i = 0 ))
	2936	while (( i < iic ))
	2937	do
	2938	(( i = i + 1 ))
	2939	if (( i == 1 ))
	2940	then
	2941	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2942	fi
	2943	printf "\n >>> ${in_command[$i]}"
	2944	eval ${in_command[$i]}
	2945	if (( i == iic ))
	2946	then
	2947	printf "\n$striche\n"
	2948	fi
	2949	done
	2950
	2951
	2952	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2953	cpurest=${cpumax}.
	2954
	2955
[260]	2956	# START DVR STREAMING SERVER
	2957	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2958	then
	2959	if [[ "$dvr_server" != "" ]]
	2960	then
	2961
	2962	printf "\n\n *** preparing the dvr streaming server configuration file"
	2963
	2964	# Check, if a dvr server is already running
	2965	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2966	if [[ "$running_dvrserver_id" != "" ]]
	2967	then
	2968
[261]	2969	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2970	printf "\n This server is used instead starting a new one!"
[261]	2971	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2972
	2973	else
	2974
	2975	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2976	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2977	then
	2978	cp ${PALM_BIN}/.dvrserver.config .
	2979
	2980	# Entering the BASEDIR, UID and GID into this file
	2981	user_id=`id -u`
	2982	group_id=`id -g`
	2983	# & is needed as seperator, because TEMPDIR contains /
	2984	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2985	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2986	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2987	mv .dvrserver.3 .dvrserver.config
	2988	rm .dvrserver.1 .dvrserver.2
	2989
	2990	# Start dvr server in background, get his id and print on terminal
	2991	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2992	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2993	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2994	local_dvrserver_running=.TRUE.
	2995	else
	2996	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2997	printf "\n \"$PALM_BIN\" "
	2998	locat=dvr
	2999	exit
	3000	fi
	3001
	3002	fi
	3003
	3004	else
	3005	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	3006	fi
	3007	fi
	3008
	3009
	3010	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	3011	# LESEN VON PALM)
	3012	cat > ENVPAR << %%END%%
	3013	&envpar run_identifier = '$fname', host = '$localhost',
	3014	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[759]	3015	maximum_parallel_io_streams = $maximum_parallel_io_streams,
[260]	3016	maximum_cpu_time_allowed = ${cpumax}.,
	3017	revision = '$global_revision',
	3018	local_dvrserver_running = $local_dvrserver_running /
	3019
	3020	%%END%%
	3021
	3022
[1]	3023	# PROGRAMMSTART
	3024	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	3025	PATH=$PATH:$TEMPDIR
	3026
[359]	3027	# MPI debug option (argument checking, slows down execution due to increased latency)
	3028	if [[ "$mpi_debug" = true ]]
	3029	then
	3030	export MPI_CHECK_ARGS=1
	3031	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	3032	fi
	3033
[693]	3034	if [[ "$totalview" = true ]]
	3035	then
	3036	printf "\n *** totalview debugger will be used"
	3037	tv_opt="-tv"
	3038	else
	3039	tv_opt=""
	3040	fi
	3041
[1]	3042	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	3043	then
	3044	if [[ "$ENVIRONMENT" = BATCH ]]
	3045	then
[211]	3046	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	3047	then
	3048	printf "\n +++ debug is allowed in interactive mode only"
	3049	locat=debug
	3050	exit
	3051	fi
[1]	3052	fi
[5]	3053	if [[ $localhost = decalpha ]]
[1]	3054	then
	3055	dxladebug a.out
[622]	3056	elif [[ $localhost = ibmh ]]
[1]	3057	then
	3058
	3059	# SETUP THE IBM MPI ENVIRONMENT
	3060	export MP_SHARED_MEMORY=yes
	3061	export AIXTHREADS_SCOPE=S
	3062	export OMP_NUM_THREADS=$threads_per_task
	3063	export AUTHSTATE=files
	3064	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3065
	3066	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3067	export MP_ADAPTER_USE=shared
	3068	export MP_CPU_USE=multiple
	3069	export MP_TIMEOUT=1200
	3070
	3071	unset MP_TASK_AFFINITY
	3072
	3073	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3074	#(( ii = 1 ))
	3075	#while (( ii <= $numprocs ))
	3076	#do
	3077	# echo $localhost_realname >> hostfile
	3078	# (( ii = ii + 1 ))
	3079	#done
	3080	#export MP_HOSTFILE=hostfile
	3081
	3082	if [[ "$LOADLBATCH" = yes ]]
	3083	then
	3084	totalview poe a.out $ROPTS
	3085	else
	3086	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3087	export TVDSVRLAUNCHCMD=ssh
	3088	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3089	fi
[211]	3090	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3091	then
	3092	# CURRENTLY NO DEBUGGER ON LCSGI
	3093	if [[ $run_coupled_model = true ]]
	3094	then
	3095	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3096	locat=debug
	3097	exit
[223]	3098	else
	3099	echo "no_coupling" > runfile_atmos
[211]	3100	fi
	3101	(( ii = $numprocs / $threads_per_task ))
	3102	export OMP_NUM_THREADS=$threads_per_task
	3103	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3104	if [[ $threads_per_task != 1 ]]
	3105	then
	3106	printf "\n threads per task: $threads_per_task"
	3107	fi
	3108	printf "\n\n"
[223]	3109	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3110	then
	3111	# export MPI_LAUNCH_TIMEOUT=360
	3112	if [[ "$totalview" = true ]]
	3113	then
	3114	printf "\n running totalview debugger"
[693]	3115	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
[223]	3116	else
	3117	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3118	fi
	3119	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3120	then
	3121	# ulimit -s 300000 # A too large stack size causes problems
	3122	# export MV2_NUM_PORTS=2
	3123	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3124	if [[ "$totalview" = true ]]
	3125	then
	3126	printf "\n running totalview debugger"
[693]	3127	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
[362]	3128	else
	3129	mpiexec ./a.out $ROPTS < runfile_atmos
	3130	fi
[223]	3131	fi
[1]	3132	else
	3133	printf "\n +++ no debug available on \"$localhost\" "
	3134	printf "\n or not implemented in mrun so far"
	3135	locat=debug
	3136	exit
	3137	fi
[622]	3138
	3139	# end debug mode
[1]	3140	else
[622]	3141
	3142	# normal execution
[1]	3143	if [[ -n $numprocs ]]
	3144	then
	3145	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3146	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3147	then
	3148	# SETUP THE IBM MPI ENVIRONMENT
[693]	3149	if [[ $host != ibmh && $host != ibmkisti ]]
[312]	3150	then
	3151	export MP_SHARED_MEMORY=yes
	3152	export AIXTHREAD_SCOPE=S
	3153	export OMP_NUM_THREADS=$threads_per_task
	3154	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3155	export AUTHSTATE=files
	3156	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3157	# export MP_PRINTENV=yes
[1]	3158
[312]	3159	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3160	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3161	export MP_WAIT_MODE=poll
	3162	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3163	fi
[693]	3164
	3165	if [[ $host = ibmkisti ]]
	3166	then
	3167	export LANG=en_US
	3168	export MP_SHARED_MEMORY=yes
[696]	3169	if [[ $threads_per_task = 1 ]]
	3170	then
	3171	export MP_SINGLE_THREAD=yes
	3172	export MEMORY_AFFINITY=MCM
	3173	else
	3174	export OMP_NUM_THREADS=$threads_per_task
	3175	fi
[693]	3176	fi
	3177
[1]	3178	if [[ "$LOADLBATCH" = yes ]]
	3179	then
	3180	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3181	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3182	then
[102]	3183	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3184	else
[343]	3185	if [[ $run_coupled_model = false ]]
	3186	then
	3187	if [[ "$ocean_file_appendix" = true ]]
	3188	then
	3189	echo "precursor_ocean" > runfile_atmos
	3190	else
	3191	echo "precursor_atmos" > runfile_atmos
	3192	fi
	3193	else
	3194	(( iia = $numprocs_atmos / $threads_per_task ))
	3195	(( iio = $numprocs_ocean / $threads_per_task ))
	3196	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3197	printf "\n using $coupled_mode coupling"
	3198	printf "\n\n"
	3199	echo "coupled_run $iia $iio" > runfile_atmos
	3200	fi
	3201	poe ./a.out $ROPTS < runfile_atmos
[1]	3202	fi
	3203	else
[622]	3204	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
[1]	3205	then
[102]	3206	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[693]	3207	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
[1]	3208	then
	3209	if [[ -f $hostfile ]]
	3210	then
	3211	cp $hostfile hostfile
	3212	else
	3213	(( ii = 1 ))
	3214	while (( ii <= $numprocs ))
	3215	do
	3216	echo $localhost_realname >> hostfile
	3217	(( ii = ii + 1 ))
	3218	done
	3219	fi
	3220	export MP_HOSTFILE=hostfile
[331]	3221	if [[ $run_coupled_model = false ]]
	3222	then
	3223	if [[ "$ocean_file_appendix" = true ]]
	3224	then
	3225	echo "precursor_ocean" > runfile_atmos
	3226	else
	3227	echo "precursor_atmos" > runfile_atmos
	3228	fi
	3229	else
	3230	(( iia = $numprocs_atmos / $threads_per_task ))
	3231	(( iio = $numprocs_ocean / $threads_per_task ))
	3232	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3233	printf "\n using $coupled_mode coupling"
	3234	printf "\n\n"
	3235	echo "coupled_run $iia $iio" > runfile_atmos
	3236	fi
[622]	3237	if [[ $localhost = ibmy ]]
	3238	then
	3239	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3240	else
	3241	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
	3242	fi
[331]	3243
[1]	3244	else
	3245	if [[ "$host_file" = "" ]]
	3246	then
	3247	printf "\n +++ no hostfile given in configuration file"
	3248	locat=config_file
	3249	exit
	3250	else
	3251	eval host_file=$host_file
	3252	fi
	3253	export MP_HOSTFILE=$host_file
[102]	3254	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3255	fi
	3256	fi
[251]	3257	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3258	then
	3259	(( ii = nodes ))
	3260	if [[ $ii = 1 ]]
	3261	then
	3262	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3263	export MPIPROGINF=YES
[61]	3264	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3265	echo "*** execution on single node with mpirun"
[102]	3266	mpirun -np $numprocs ./a.out $ROPTS
[1]	3267	else
	3268	(( i = 0 ))
	3269	while (( i < ii ))
	3270	do
	3271	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3272	(( i = i + 1 ))
	3273	done
	3274
	3275	echo "#!/bin/sh" > mpi_exec_shell
	3276	echo " " >> mpi_exec_shell
	3277	echo "set -u" >> mpi_exec_shell
	3278	echo "F_ERRCNT=0" >> mpi_exec_shell
	3279	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3280	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3281	echo "cpurest=$cpurest" >> mpi_exec_shell
	3282	echo "fname=$fname" >> mpi_exec_shell
	3283	echo "localhost=$localhost" >> mpi_exec_shell
	3284	echo "return_addres=$return_addres" >> mpi_exec_shell
	3285	echo "return_username=$return_username" >> mpi_exec_shell
	3286	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3287	echo "write_binary=$write_binary" >> mpi_exec_shell
	3288	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3289	echo " " >> mpi_exec_shell
	3290	echo "export F_ERRCNT" >> mpi_exec_shell
	3291	echo "export MPIPROGINV" >> mpi_exec_shell
	3292	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3293	echo "export cpurest" >> mpi_exec_shell
	3294	echo "export fname" >> mpi_exec_shell
	3295	echo "export localhost" >> mpi_exec_shell
	3296	echo "export return_addres" >> mpi_exec_shell
	3297	echo "export return_username" >> mpi_exec_shell
	3298	echo "export tasks_per_node" >> mpi_exec_shell
	3299	echo "export write_binary" >> mpi_exec_shell
	3300	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3301	echo " " >> mpi_exec_shell
[102]	3302	echo "exec ./a.out" >> mpi_exec_shell
[1]	3303
	3304	chmod u+x mpi_exec_shell
	3305	export MPIPROGINF=YES
	3306	mpirun -f multinode_config &
	3307	wait
	3308
	3309	fi
[440]	3310	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3311	then
	3312
	3313	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3314	# DOES NOT EXIST
[179]	3315	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3316	then
[179]	3317	if [[ -f $hostfile ]]
	3318	then
	3319	cp $hostfile hostfile
[746]	3320	(( ii = $numprocs / $threads_per_task ))
[179]	3321	else
	3322	(( ii = 1 ))
	3323	while (( ii <= $numprocs / $threads_per_task ))
	3324	do
	3325	echo $localhost_realname >> hostfile
	3326	(( ii = ii + 1 ))
	3327	done
	3328	fi
	3329	eval zeile=\"`head -n $ii hostfile`\"
	3330	printf "\n *** running on: $zeile"
[1]	3331	fi
[179]	3332
[1]	3333	(( ii = $numprocs / $threads_per_task ))
	3334	export OMP_NUM_THREADS=$threads_per_task
[696]	3335	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3336	if [[ $threads_per_task != 1 ]]
	3337	then
[405]	3338	# increase stack size to unlimited, because large runs
	3339	# may abort otherwise
	3340	ulimit -Ss unlimited
	3341	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3342	fi
[102]	3343	if [[ $run_coupled_model = false ]]
[1]	3344	then
[291]	3345	if [[ "$ocean_file_appendix" = true ]]
	3346	then
	3347	echo "precursor_ocean" > runfile_atmos
	3348	else
	3349	echo "precursor_atmos" > runfile_atmos
	3350	fi
[102]	3351	printf "\n\n"
[179]	3352	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3353	then
[221]	3354	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3355	then
[366]	3356	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3357	# export MPI_DSM_DISTRIBUTE=1
	3358	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3359	if [[ $use_openmp = false ]]
	3360	then
[412]	3361	if [[ "$sgi_feature" = ice2 ]]
	3362	then
	3363	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3364	else
	3365	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3366	fi
[622]	3367	else
	3368	unset MPI_DSM_CPULIST
[377]	3369	fi
[366]	3370	# MPI_IB_RAILS: use both IB rails on ICE2
	3371	export MPI_BUFS_PER_HOST=512
	3372	export MPI_IB_RAILS=2
[369]	3373	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3374	export MPI_CONNECTIONS_THRESHOLD=8192
[738]	3375	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[562]	3376	export MPI_TYPE_DEPTH=20
[738]	3377	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
[683]	3378	export MPI_GROUP_MAX=64
[738]	3379	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
[693]	3380	if [[ $use_openmp = true ]]
	3381	then
	3382	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3383	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
	3384	else
	3385	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
	3386	fi
[388]	3387
	3388	# next is test for openmp usage
[622]	3389	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
	3390	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
[221]	3391	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3392	then
[374]	3393	export MV2_NUM_PORTS=2
[376]	3394	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3395	# export MV2_ENABLE_AFFINITY=1
[376]	3396	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3397	# if [[ "$sgi_feature" = ice2 ]]
	3398	# then
	3399	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3400	# else
	3401	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3402	# fi
[678]	3403	if [[ $use_openmp = true ]]
	3404	then
	3405	unset MV2_CPU_MAPPING
	3406	export MV2_ENABLE_AFFINITY=0
	3407	fi
[412]	3408	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[678]	3409	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
[622]	3410	if [[ $use_openmp = true ]]
[405]	3411	then
[678]	3412	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
[693]	3413	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3414	else
[693]	3415	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
[405]	3416	fi
[738]	3417	elif [[ "$mpilib" = impi ]]
	3418	then
	3419	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
	3420	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
[221]	3421	fi
[437]	3422	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3423	then
[544]	3424	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[755]	3425	elif [[ $host = lcflow ]]
	3426	then
	3427	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
[164]	3428	else
[223]	3429	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3430	fi
[1]	3431	else
[164]	3432
[206]	3433	# currently there is no full MPI-2 support on ICE and XT4
	3434	(( iia = $numprocs_atmos / $threads_per_task ))
	3435	(( iio = $numprocs_ocean / $threads_per_task ))
	3436	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3437	printf "\n using $coupled_mode coupling"
[102]	3438	printf "\n\n"
[164]	3439
[206]	3440	if [[ $coupled_mode = "mpi2" ]]
[164]	3441	then
[206]	3442	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3443	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3444	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3445	then
[197]	3446
[221]	3447	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3448	then
	3449	# export MPI_LAUNCH_TIMEOUT=360
	3450	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3451	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3452	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3453	then
	3454	# ulimit -s 300000 # A too large stack size causes problems
	3455	# export MV2_NUM_PORTS=2
	3456	# export MV2_CPU_MAPPING=0:1:2:3
	3457	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3458	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3459	fi
[197]	3460
[437]	3461	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3462	then
[197]	3463
[206]	3464	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3465	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3466
	3467	else
	3468	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3469	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3470	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3471	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3472	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3473	fi
	3474	wait
	3475
[164]	3476	else
	3477
[206]	3478	echo "coupled_run $iia $iio" > runfile_atmos
	3479	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3480	then
	3481
[221]	3482	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3483	then
	3484	# export MPI_LAUNCH_TIMEOUT=360
	3485	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3486	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3487	then
	3488	# ulimit -s 300000 # A too large stack size causes problems
	3489	# export MV2_NUM_PORTS=2
	3490	# export MV2_CPU_MAPPING=0:1:2:3
	3491	mpiexec ./a.out $ROPTS < runfile_atmos
	3492	fi
[206]	3493
[437]	3494	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3495	then
	3496
	3497	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3498
[718]	3499	elif [[ $host = lck \|\| $host = lckordi ]]
[367]	3500	then
	3501	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3502	fi
	3503	wait
[164]	3504	fi
[102]	3505
[206]	3506	fi
[1]	3507	elif [[ $host = decalpha ]]
	3508	then
[102]	3509	dmpirun -np $numprocs a.out $ROPTS
[440]	3510	elif [[ $host = lckyoto ]]
	3511	then
	3512	set -xv
	3513	export P4_RSHCOMMAND=plesh
	3514	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3515	if [[ "$ENVIRONMENT" = BATCH ]]
	3516	then
[505]	3517	if [[ "$cond2" = fujitsu ]]
	3518	then
	3519	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3520	elif [[ "cond2" = pgi ]]
	3521	then
	3522	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3523	else
	3524	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3525	fi
[440]	3526	else
[505]	3527	if [[ "$cond2" = "" ]]
	3528	then
	3529	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3530	else
	3531	mpirun -np $numprocs ./a.out $ROPTS
	3532	fi
[440]	3533	fi
	3534	set +xv
[1]	3535	elif [[ $host = lctit ]]
	3536	then
[678]	3537	export OMP_NUM_THREADS=$threads_per_task
	3538	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3539	if [[ "$threads_per_task" != 1 ]]
	3540	then
	3541	export MV2_ENABLE_AFFINITY=0
	3542	fi
	3543	echo "----- PBS_NODEFILE content:"
	3544	cat $PBS_NODEFILE
	3545	echo "-----"
	3546	(( ii = $numprocs / $threads_per_task ))
	3547	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
	3548	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
[1]	3549	else
[102]	3550	mpprun -n $numprocs a.out $ROPTS
[1]	3551	fi
	3552	[[ $? != 0 ]] && execution_error=true
	3553
	3554
	3555	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3556	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3557	then
	3558	apprentice
	3559	fi
	3560	else
[102]	3561	a.out $ROPTS
[1]	3562	fi
	3563	fi
	3564	if [[ $? != 0 \|\| $execution_error = true ]]
	3565	then
	3566
	3567	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3568	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3569	printf "\n +++ runtime error occured"
	3570	locat=execution
	3571	exit
	3572	else
[102]	3573	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3574	printf "\n$striche\n *** execution finished \n"
[260]	3575
[261]	3576	# Stop the dvr streaming server and process the dvr output in order
	3577	# to create dvrs- and html-files containing all streams
[260]	3578	if [[ "$dvrserver_id" != "" ]]
	3579	then
	3580	kill $dvrserver_id
	3581	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3582
[262]	3583	# If there is a directory, data have been output by the
	3584	# streaming server. Otherwise, user has chosen dvrp_output=local
	3585	if [[ -d DATA_DVR ]]
	3586	then
[261]	3587
[262]	3588	# Add the current dvr configuration file to the dvr output
	3589	# directory
	3590	cp .dvrserver.config DATA_DVR
	3591
	3592	# Process the dvr output (option -s for also generating
	3593	# sequence mode data)
	3594	process_dvr_output -d DATA_DVR -f $fname -s
	3595
	3596	else
	3597
	3598	# Process the local output
	3599	process_dvr_output -l -d DATA_DVR -f $fname
	3600
	3601	fi
	3602
	3603	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3604	then
	3605
	3606	# Process dvr output generated in local mode (dvrp_output=local)
	3607	process_dvr_output -l -d DATA_DVR -f $fname
	3608
[260]	3609	fi
[1]	3610	fi
	3611
	3612
	3613
[503]	3614	# Call of combine_plot_fields in order to merge single files written
	3615	# by each PE into one file.
	3616	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3617	then
	3618	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3619	printf "\n 2d- and/or 3d-data may be incomplete!"
	3620	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3621	else
	3622	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3623	combine_plot_fields${block}.x
	3624	fi
	3625
	3626
	3627
[1]	3628	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3629	(( i = 0 ))
	3630	while (( i < ioc ))
	3631	do
	3632	(( i = i + 1 ))
	3633	if (( i == 1 ))
	3634	then
	3635	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3636	fi
	3637	printf "\n >>> ${out_command[$i]}"
	3638	eval ${out_command[$i]}
	3639	if (( i == ioc ))
	3640	then
	3641	printf "\n$striche\n"
	3642	fi
	3643	done
	3644
	3645
	3646	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3647	if [[ $do_trace = true ]]
	3648	then
	3649	printf "\n\n"
	3650	ls -al
	3651	fi
	3652
	3653
	3654
	3655	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3656	(( i = 0 ))
	3657	while (( i < iout ))
	3658	do
	3659	(( i = i + 1 ))
	3660	if (( i == 1 ))
	3661	then
	3662	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3663	fi
	3664
	3665	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3666	files_for_pes=false; filetyp=file
	3667	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3668	then
	3669	files_for_pes=true; filetyp=directory
	3670	actionout[$i]=""
	3671	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3672	then
	3673	actionout[$i]=""
	3674	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3675	then
	3676	files_for_pes=true; filetyp=directory
	3677	actionout[$i]="ar"
	3678	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3679	then
	3680	actionout[$i]="ar"
	3681	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3682	then
	3683	files_for_pes=true; filetyp=directory
	3684	actionout[$i]="fl"
	3685	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3686	then
	3687	actionout[$i]="fl"
	3688	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3689	then
	3690	files_for_pes=true; filetyp=directory
	3691	actionout[$i]="tr"
	3692	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3693	then
	3694	actionout[$i]="tr"
	3695	fi
	3696
	3697	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3698	then
	3699	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3700	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3701	then
	3702	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3703	else
	3704
	3705
	3706	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3707	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3708	# REMOTE-RECHNUNGEN
	3709	if [[ "${actionout[$i]}" = tr ]]
	3710	then
	3711	if [[ $localhost != $fromhost ]]
	3712	then
	3713	if [[ $files_for_pes = false ]]
	3714	then
	3715	cps=""
	3716	cst=""
	3717	else
	3718	cps=-c
	3719	cst="/"
	3720	fi
[622]	3721	if [[ $localhost = nech ]]
[1]	3722	then
	3723
	3724	# TRANSFER IN EIGENSTAENDIGEM JOB
	3725	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3726	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3727	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3728	if [[ $files_for_pes = false ]]
	3729	then
	3730	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3731	else
	3732	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3733	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3734	fi
	3735
	3736	echo "set -x" > transfer_${localout[$i]}
	3737	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3738
	3739	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3740	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3741	printf "\n or higher cycle\n"
	3742	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3743
[1]	3744	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3745
	3746	if [[ $localhost = nech ]]
	3747	then
[82]	3748	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3749	else
	3750	if [[ "$LOGNAME" = b323013 ]]
	3751	then
[164]	3752	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3753	else
[164]	3754	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3755	fi
	3756	fi
	3757
	3758	else
	3759
	3760	# TRANSFER INNERHALB DIESES JOBS
	3761	transfer_failed=false
[82]	3762	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3763	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3764	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3765	[[ $? != 0 ]] && transfer_failed=true
[1]	3766
	3767	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3768	# LOKALER MASCHINE ANLEGEN
	3769	if [[ $transfer_failed = true ]]
	3770	then
	3771	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3772	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3773
	3774	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3775	# ANLEGEN.
	3776	eval local_catalog=${pathout[$i]}
	3777	if [[ ! -d $local_catalog ]]
	3778	then
	3779	printf " *** local directory does not exist. Trying to create:\n"
	3780	printf " $local_catalog \n"
	3781	mkdir -p $local_catalog
	3782	fi
	3783	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3784	transfer_problems=true
	3785	fi
	3786	fi
	3787	else
	3788
	3789	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3790	actionout[$i]=""
	3791	fi
	3792	fi
	3793
	3794
	3795	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3796	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3797	# REMOTE-RECHNUNGEN
	3798	if [[ "${actionout[$i]}" = tra ]]
	3799	then
	3800	if [[ $localhost != $fromhost ]]
	3801	then
[622]	3802	if [[ $localhost = ibmh \|\| $localhost = nech ]]
[1]	3803	then
	3804
	3805	# TRANSFER IN EIGENSTAENDIGEM JOB
	3806	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3807	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3808	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3809	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3810
	3811	echo "set -x" > transfer_${localout[$i]}
	3812	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3813
	3814	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3815	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3816	printf "\n or higher cycle\n"
	3817	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3818
[1]	3819	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3820
	3821	if [[ $localhost = nech ]]
	3822	then
[82]	3823	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3824	else
	3825	if [[ $LOGNAME = b323013 ]]
	3826	then
[164]	3827	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3828	else
[164]	3829	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3830	fi
	3831	fi
	3832
	3833	else
	3834
	3835	# TRANSFER INNERHALB DIESES JOBS
	3836	transfer_failed=false
[82]	3837	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3838	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3839	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3840	[[ $? != 0 ]] && transfer_failed=true
[1]	3841
	3842	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3843	# LOKALER MASCHINE ANLEGEN
	3844	if [[ $transfer_failed = true ]]
	3845	then
	3846	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3847	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3848
	3849	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3850	# ANLEGEN
	3851	eval local_catalog=${pathout[$i]}
	3852	if [[ ! -d $local_catalog ]]
	3853	then
	3854	printf " *** local directory does not exist. Trying to create:\n"
	3855	printf " $local_catalog \n"
	3856	mkdir -p $local_catalog
	3857	fi
	3858
	3859	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3860	transfer_problems=true
	3861	fi
	3862	fi
	3863	else
	3864
	3865	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3866	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3867	actionout[$i]=a
	3868	fi
	3869	fi
	3870
	3871
	3872	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3873	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3874	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3875	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3876	if [[ "${actionout[$i]}" = fl ]]
	3877	then
	3878	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3879	chmod g+rx $tmp_data_catalog
	3880	if [[ $files_for_pes = false ]]
	3881	then
	3882	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3883	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3884	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3885	else
	3886	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3887	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3888	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3889	cd ${localout[$i]}
	3890	for file in $(ls *)
	3891	do
	3892	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3893	done
	3894	cd $TEMPDIR
[1]	3895	fi
	3896
	3897
	3898	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3899	if [[ $store_on_archive_system = true ]]
	3900	then
	3901
	3902	if [[ $archive_system = asterix ]]
	3903	then
	3904	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3905	if [[ $files_for_pes = false ]]
	3906	then
	3907	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3908	else
	3909	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3910	fi
	3911	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3912	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3913	echo "then" >> archive_${frelout[$i]}
	3914	echo " do_stageout=false" >> archive_${frelout[$i]}
	3915	echo "else" >> archive_${frelout[$i]}
	3916	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3917	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3918	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3919	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3920	if [[ $files_for_pes = false ]]
	3921	then
	3922	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3923	else
	3924	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3925	fi
	3926	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3927	echo "fi" >> archive_${frelout[$i]}
	3928	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3929	elif [[ $archive_system = DMF ]]
	3930	then
	3931	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3932	if [[ $files_for_pes = false ]]
	3933	then
	3934	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3935	locat=DMF
	3936	exit
	3937	else
	3938	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3939	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3940	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3941	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3942	fi
	3943	elif [[ $archive_system = tivoli ]]
	3944	then
	3945	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3946	if [[ $files_for_pes = false ]]
	3947	then
	3948	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3949	echo "set -x" >> archive_${frelout[$i]}
	3950	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3951	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3952	else
	3953
	3954	echo "set -x" >> archive_${frelout[$i]}
	3955	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3956	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3957	cd $tmp_data_catalog
	3958	all_files=`ls -1 ${frelout[$i]}/*`
	3959	cd - > /dev/null
	3960	(( inode = 0 ))
	3961	(( tp1 = tasks_per_node + 1 ))
	3962	while (( inode < nodes ))
	3963	do
	3964	# echo "*** all_files = \"$all_files\" "
	3965	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3966	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3967	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3968	# echo "*** files = \"$files\" "
	3969	# echo "*** all_files = \"$all_files\" "
[416]	3970	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3971	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3972	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3973	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3974	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3975	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3976	(( inode = inode + 1 ))
	3977	done
	3978	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3979	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3980	fi
	3981	elif [[ $archive_system = ut ]]
	3982	then
	3983	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3984	if [[ $files_for_pes = false ]]
	3985	then
	3986	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3987	echo "set -x" >> archive_${frelout[$i]}
	3988	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3989	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3990	else
	3991
	3992	echo "set -x" >> archive_${frelout[$i]}
	3993	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3994	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3995	cd $tmp_data_catalog
	3996	all_files=`ls -1 ${frelout[$i]}/*`
	3997	cd - > /dev/null
	3998	(( inode = 0 ))
	3999	(( tp1 = tasks_per_node + 1 ))
	4000	while (( inode < nodes ))
	4001	do
	4002	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	4003	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	4004	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	4005	(( inode = inode + 1 ))
	4006	done
	4007	fi
	4008	elif [[ $archive_system = none ]]
	4009	then
	4010	printf " +++ archiving on $localhost not available!\n"
	4011	fi
	4012
	4013	if [[ $archive_system != none ]]
	4014	then
[399]	4015	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	4016	then
[164]	4017	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	4018	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	4019	elif [[ $localhost = nech ]]
	4020	then
[82]	4021	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4022	fi
	4023	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4024	fi
	4025	else
[399]	4026	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	4027	fi
	4028
	4029
	4030	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	4031	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4032	if [[ $files_for_pes = false ]]
	4033	then
	4034	cat /dev/null > ${pathout[$i]}
	4035	else
	4036	mkdir -p ${pathout[$i]}
	4037	fi
	4038
	4039	fi
	4040
	4041
	4042	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	4043	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	4044	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	4045	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	4046	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	4047	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	4048	if [[ "${actionout[$i]}" = ar ]]
	4049	then
	4050	if [[ $files_for_pes = false ]]
	4051	then
	4052	printf "\n >>> OUTPUT: ${localout[$i]} to"
	4053	printf "\n ${pathout[$i]}"
	4054	printf "\n File will be copied to archive-system ($archive_system) !\n"
	4055	else
	4056	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	4057	printf "\n ${pathout[$i]}"
	4058	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	4059	fi
	4060	mv ${localout[$i]} ${frelout[$i]}
	4061
	4062	file_saved=false
	4063
	4064	if [[ $archive_system = asterix ]]
	4065	then
	4066	do_stageout=true
	4067	(( stageout_anz = 0 ))
	4068	while [[ $do_stageout = true ]]
	4069	do
	4070	if [[ $files_for_pes = false ]]
	4071	then
	4072	stageout ${frelout[$i]} > STAGE_OUTPUT
	4073	else
	4074	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	4075	fi
	4076	cat STAGE_OUTPUT
	4077	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	4078	then
	4079	file_saved=true
	4080	do_stageout=false
	4081	else
	4082	if [[ $files_for_pes = false ]]
	4083	then
	4084	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	4085	else
	4086	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	4087	fi
	4088	(( stageout_anz = stageout_anz + 1 ))
	4089	if (( stageout_anz == 10 ))
	4090	then
	4091	printf "\n +++ stoped after 10 unsuccessful tries!"
	4092	archive_save=false
	4093	do_stageout=false
	4094	else
	4095	printf "\n *** new try to store on archive after 15 min:"
	4096	sleep 900
	4097	fi
	4098	fi
	4099	done
	4100	elif [[ $archive_system = DMF ]]
	4101	then
	4102	if [[ $files_for_pes = false ]]
	4103	then
	4104	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4105	locat=DMF
	4106	exit
	4107	else
	4108	rm -rf $ARCHIVE/${frelout[$i]}
	4109	cp -r ${frelout[$i]} $ARCHIVE
	4110	fi
	4111	file_saved=true
	4112	elif [[ $archive_system = tivoli ]]
	4113	then
	4114	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4115	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4116	# GELEGT WERDEN
	4117	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4118	chmod g+rx $tmp_data_catalog
	4119	if [[ $files_for_pes = false ]]
	4120	then
	4121	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4122	else
	4123	mkdir $tmp_data_catalog/${frelout[$i]}
	4124	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4125	fi
	4126
	4127	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4128	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4129	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4130	if [[ $files_for_pes = false ]]
	4131	then
	4132	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4133	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4134	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4135	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4136	else
	4137	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4138	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4139	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4140	fi
	4141
[164]	4142	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4143	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4144	file_saved=true
	4145
	4146	elif [[ $archive_system = ut ]]
	4147	then
	4148	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4149	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4150	# GELEGT WERDEN
	4151	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4152	chmod g+rx $tmp_data_catalog
	4153	if [[ $files_for_pes = false ]]
	4154	then
	4155	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4156	else
	4157	mkdir $tmp_data_catalog/${frelout[$i]}
	4158	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4159	fi
	4160
	4161	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4162	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4163	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4164	if [[ $files_for_pes = false ]]
	4165	then
	4166	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4167	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4168	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4169	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4170	else
	4171	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4172	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4173	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4174	fi
	4175
[82]	4176	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4177	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4178	file_saved=true
	4179
	4180	else
	4181	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4182	archive_save=false
	4183	fi
	4184	if [[ $file_saved = true ]]
	4185	then
	4186	if [[ $files_for_pes = false ]]
	4187	then
	4188	cat /dev/null > ${pathout[$i]}
	4189	else
	4190	mkdir -p ${pathout[$i]}
	4191	fi
	4192	fi
	4193	fi
	4194
	4195	# APPEND AUF LOKALER MASCHINE
	4196	if [[ "${actionout[$i]}" = "a" ]]
	4197	then
[741]	4198	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
	4199	then
	4200	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
	4201	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
	4202	else
	4203	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4204	cat ${localout[$i]} >> ${pathout[$i]}
	4205	fi
[1]	4206	fi
	4207
	4208	# KOPIEREN AUF LOKALER MASCHINE
	4209	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4210	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4211	then
	4212
	4213	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4214	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4215	then
	4216	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4217	if [[ $link_local_output = true ]]
	4218	then
	4219	printf " using ln -f\n"
	4220	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4221	fi
	4222	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4223	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4224	then
	4225	if [[ $link_local_output = true ]]
	4226	then
	4227	printf " ln failed, using cp...\n"
	4228	fi
	4229	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4230	fi
[1]	4231	else
	4232	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4233	if [[ $link_local_output = true ]]
	4234	then
	4235	printf " using ln -f\n"
	4236	ln -f ${localout[$i]} ${pathout[$i]}
	4237	fi
	4238	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4239	if [[ ! -f "${pathout[$i]}" ]]
	4240	then
	4241	if [[ $link_local_output = true ]]
	4242	then
	4243	printf " ln failed, using cp...\n"
	4244	fi
	4245	cp ${localout[$i]} ${pathout[$i]}
	4246	fi
[1]	4247	fi
	4248
	4249	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4250	then
	4251
	4252	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4253	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4254	# WIRD DANN KOPIERT
	4255	# PER MOVE UMBENANNT WERDEN
	4256	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4257	if [[ $link_local_output = true ]]
	4258	then
	4259	printf " using ln -f\n"
	4260	mkdir ${pathout[$i]}
	4261	cd ${localout[$i]}
	4262	for file in $(ls *)
	4263	do
	4264	ln -f $file ${pathout[$i]}
	4265	done
	4266	cd $TEMPDIR
	4267	fi
	4268	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4269	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4270	then
	4271	if [[ $link_local_output = true ]]
	4272	then
	4273	printf " ln failed for .../_0000, using cp...\n"
	4274	fi
	4275	cp -r ${localout[$i]} ${pathout[$i]}
	4276	fi
[1]	4277
	4278	fi
	4279	fi
	4280	done
	4281	if (( i != 0 ))
	4282	then
	4283	if [[ $transfer_problems = true ]]
	4284	then
	4285	printf "\n$striche\n *** OUTPUT-files saved"
	4286	printf "\n +++ WARNING: some data transfers failed! \n"
	4287	else
	4288	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4289	fi
	4290	fi
	4291
	4292
	4293	# EVENTUELL FOLGEJOB STARTEN
	4294	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4295	if [[ -f CONTINUE_RUN ]]
	4296	then
	4297
	4298	if [[ $archive_save = true ]]
	4299	then
	4300
	4301	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4302	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4303	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4304	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4305	# HANDEN
	4306	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4307	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4308	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4309	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4310	then
	4311	mc=`echo $mc \| sed 's/#/f/g'`
	4312	fi
	4313
	4314
	4315	# JOB STARTEN
	4316	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4317	echo " $mc"
	4318	printf "\n$striche\n"
	4319	if [[ $localhost != $fromhost ]]
	4320	then
	4321
[693]	4322	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
[1]	4323	then
	4324	echo "*** ssh will be used to initiate restart-runs!"
	4325	echo " return_addres=\"$return_addres\" "
	4326	echo " return_username=\"$return_username\" "
[635]	4327	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
[1]	4328	then
[757]	4329	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4330	else
[693]	4331	if [[ $localhost = ibmkisti ]]
	4332	then
	4333	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
	4334	else
	4335	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4336	fi
[1]	4337	fi
	4338	else
	4339	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4340	locat=restart; exit
	4341	fi
	4342
	4343	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4344	# DER AKTUELLE JOB ENDET
[399]	4345	if [[ $queue = special1q ]]
	4346	then
	4347	sleep 120
	4348	else
	4349	sleep 30
	4350	fi
[1]	4351
	4352	else
	4353
	4354	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4355	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4356	cd $LOCAL_PWD
[108]	4357	if [[ $localhost = lcfimm ]]
	4358	then
	4359	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4360	else
	4361	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4362	fi
[1]	4363	cd - > /dev/null
	4364	fi
	4365	printf "\n$striche\n *** restart-run initiated \n"
	4366
	4367
	4368	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4369	# GEHOLT WORDEN SIND, LOESCHEN
	4370	(( i = 0 ))
	4371	while (( i < iin ))
	4372	do
	4373	(( i = i + 1 ))
	4374	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4375	then
	4376	rm -r $tmp_data_catalog/${frelin[$i]}
	4377	fi
	4378	done
	4379
	4380	else
	4381
	4382	printf "\n +++ no restart-run possible, since errors occured"
	4383	printf "\n during the archive process"
	4384	fi
	4385
	4386	fi
	4387
	4388
	4389
	4390	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4391	if [[ "$email_notification" != "none" ]]
[1]	4392	then
	4393
	4394	if [[ $localhost != $fromhost ]]
	4395	then
	4396	if [[ -f CONTINUE_RUN ]]
	4397	then
	4398	echo "PALM restart run necessary" > email_text
	4399	echo "description header of actual run:" >> email_text
	4400	cat CONTINUE_RUN >> email_text
	4401	echo "mrun-command to restart:" >> email_text
	4402	echo "$mc" >> email_text
	4403	else
	4404	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4405	fi
	4406	mail $email_notification < email_text
	4407	printf "\n *** email notification sent to \"$email_notification\" "
	4408	fi
	4409	fi
	4410
	4411
	4412
	4413	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4414	cd $HOME
	4415	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4416
	4417	else
	4418
	4419
	4420	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4421	# CHENDE AKTIONEN DURCHGEFUEHRT
	4422
	4423	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[693]	4424	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
[1]	4425	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4426	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4427	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4428	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4429	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4430	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4431	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4432	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4433	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4434	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4435	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4436	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4437	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4438	if [[ $use_openmp = true ]]
	4439	then
[622]	4440	mrun_com=${mrun_com}" -O $threads_per_task"
[1]	4441	fi
[759]	4442	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
[397]	4443	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4444	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4445	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4446	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4447	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4448	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4449	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[759]	4450	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
[1]	4451	if [[ $do_remote = true ]]
	4452	then
	4453	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4454	fi
	4455
	4456
	4457	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4458	jobfile=jobfile.$RANDOM
	4459
	4460
	4461	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4462	echo "mkdir $TEMPDIR" >> $jobfile
	4463	echo "cd $TEMPDIR" >> $jobfile
	4464
	4465
	4466	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4467	if [[ $do_trace = true ]]
	4468	then
	4469	echo "set -x" >> $jobfile
	4470	else
	4471	echo "set +vx" >> $jobfile
	4472	fi
	4473
	4474
[191]	4475	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4476	# DATEI FUER DEN JOB
[693]	4477	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
[1]	4478	then
	4479
[191]	4480	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4481	# KOPIEREN
	4482	if [[ $restart_run != true ]]
	4483	then
	4484	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4485	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4486	fi
[1]	4487
[191]	4488	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[693]	4489	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
[193]	4490	echo "set -x" >> $jobfile
[693]	4491	if [[ $host = $localhost ]]
	4492	then
	4493	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4494	else
	4495	if [[ $host != ibmkisti ]]
	4496	then
	4497	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4498	else
	4499	# on KISTI's IBM firewall is only opened on interactive node
	4500	echo "localdir=\`pwd\`" >> $jobfile
	4501	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
	4502	fi
	4503	fi
[193]	4504	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4505
[193]	4506	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4507	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4508	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4509	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4510	echo "execute_mrun=true" >> $jobfile
	4511	echo " " >> $jobfile
	4512
[191]	4513	else
	4514
	4515	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4516	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4517	if [[ $do_compile = true ]]
	4518	then
	4519
	4520	source_catalog=SOURCES_FOR_RUN_$fname
	4521
	4522	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4523	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4524	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4525	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4526	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4527	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4528
	4529	for filename in $source_list
	4530	do
	4531	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4532	echo "cat > $filename << \"%END%\"" >> $jobfile
	4533	cat $source_catalog/$filename >> $jobfile
	4534	echo " " >> $jobfile
	4535	echo "%END%" >> $jobfile
	4536	echo " " >> $jobfile
	4537	done
	4538
[1]	4539	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4540	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4541	cat $source_catalog/Makefile >> $jobfile
[1]	4542	echo " " >> $jobfile
	4543	echo "%END%" >> $jobfile
	4544	echo " " >> $jobfile
	4545
[191]	4546	echo "cd - > /dev/null" >> $jobfile
[1]	4547
[191]	4548	fi
[1]	4549
	4550
[191]	4551	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4552	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4553	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4554	cat $config_file >> $jobfile
	4555	echo "%END%" >> $jobfile
	4556	echo " " >> $jobfile
[1]	4557
	4558
[191]	4559	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4560	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[693]	4561	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4562	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4563	echo "%END%" >> $jobfile
[191]	4564	echo "chmod u+x $mrun_script_name" >> $jobfile
	4565	echo "execute_mrun=true" >> $jobfile
	4566	echo " " >> $jobfile
[1]	4567
	4568	fi
	4569
[191]	4570
[1]	4571	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4572	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4573	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4574	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4575	if [[ $do_remote = true ]]
	4576	then
	4577	(( i = 0 ))
	4578	while (( i < iin ))
	4579	do
	4580	(( i = i + 1 ))
	4581	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4582	if [[ "${transin[$i]}" = job ]]
	4583	then
	4584	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4585	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4586	echo " " >> $jobfile
	4587	echo "%END%" >> $jobfile
	4588	else
[82]	4589	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4590	fi
	4591
	4592	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4593	echo "if [[ \$? = 1 ]]" >> $jobfile
	4594	echo "then" >> $jobfile
	4595	echo " echo \" \" " >> $jobfile
	4596	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4597	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4598	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4599	echo " execute_mrun=false" >> $jobfile
	4600	echo "fi" >> $jobfile
	4601	done
	4602	fi
	4603
	4604	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4605	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4606	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4607	echo "export LOCAL_PWD" >> $jobfile
	4608
	4609	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4610	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4611	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4612
[66]	4613	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4614	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4615	then
	4616	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4617	fi
[1]	4618
[693]	4619	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
[1]	4620	echo "set -x" >> $jobfile
[693]	4621	echo "queue=$queue" >> $jobfile
[1]	4622	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4623
	4624	echo 'ls -al; echo `pwd`' >> $jobfile
	4625	echo "cd \$HOME" >> $jobfile
	4626	echo "rm -rf $TEMPDIR" >> $jobfile
	4627
	4628
	4629
	4630
	4631	# JOB PER SUBJOB STARTEN
	4632	if [[ $silent = false ]]
	4633	then
	4634	printf "\n "
	4635	else
	4636	printf "\n\n"
	4637	fi
	4638
[352]	4639	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4640	rm -rf $jobfile
	4641
	4642
	4643	fi # ENDE REMOTE-TEIL
	4644
	4645
	4646
	4647	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 783

Download in other formats: