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source: palm/trunk/SCRIPTS/mrun @ 540

Last change on this file since 540 was 540, checked in by heinze, 14 years ago
changing IP-adresses to names hicegate0/bicegate0 for lcsgih/lcsgib
Property svn:keywords set to `Id Rev`
File size: 172.5 KB

Rev	Line
[71]	1	#!/bin/ksh
[503]	2	# mrun - script for running PALM jobs
[169]	3	# $Id: mrun 540 2010-06-15 13:51:16Z heinze $
[1]	4
[503]	5	# Procedure for interactive/batch PALM runs (initial runs and automatic
	6	# restart runs)
[1]	7
[503]	8	# Last changes:
[1]	9	# 03/03/94 - Siggi - Entwicklungsbeginn
	10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	12	# zelne Variable exportiert. Dies ist noetig, weil an-
	13	# sonsten irgendein Speicher ueberlaeuft und von mrun
	14	# aufgerufene Programme (z.B. stageout) mit Fehlern
	15	# abbrechen (too many arguments)
	16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	17	# defaultmaessig im RRZN-Profile eingeschaltet
	18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	19	# wegfallen
	20	# 25/04/00 - Siggi - Version 1.5
	21	# remote_addres und remote_user in return_addres bzw.
	22	# return_username umbenannt, return_username wird dem
	23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	24	# Neue Variable remote_username, die beim interaktiven
	25	# mrun-Aufruf zwingend ueber die neue Option -u oder
	26	# in der Konfigurationsdatei angegeben werden muss.
	27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	28	# Version 1.7
	29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	32	# zu bestimmen; Praeprozessoroptionen haben nun alle
	33	# die Form -Dtext=text, weil auf IBM sonst text durch
	34	# die leere Zeichenkette ersetzt wird
	35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	37	# (-D$OMP=OMP) in order to avoid problems with
	38	# OMP_NUM_THREADS
	39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	40	# tar files, one for each node used
	41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	43	# 17/01/05 - Siggi - job for data transfer to local machine now within
	44	# job class c1 (HLRN)
	45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	47	# base filename and cycle number
	48	# 16/02/05 - Gerald - hababai validated
	49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	50	# 29/03/05 - Marcus - berni*-en0 validated
	51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	52	# 24/04/05 - Siggi - netcdf support on lcmuk
	53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	55	# number) can now be used within interactive runs
	56	# 12/05/05 - Siggi - netcdf support on ibm
	57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	58	# 18/05/05 - Siggi - netcdf support on nec
	59	# 24/05/05 - Siggi - netcdf support on ibms
	60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	61	# to 30 seconds
	62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	63	# PATH is temporarily set)
	64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	65	# caused warnings in the job protocol
	66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	68	# removed
	69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	70	# realized by file attribute trpe
	71	# 28/10/05 - Siggi - if existing, the file extension is output in case
	72	# of missing input file - no job abort in case of
	73	# missing input files with file extensions
	74	# (preliminary solution)
	75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	77	# 07/12/05 - Siggi - gallego and elephanta admitted
	78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	80	# 20/01/06 - Siggi - cpp directive for ibmy
	81	# 09/02/06 - Siggi - ibmy admitted for batch mode
	82	# 13/04/06 - Siggi - ostria admitted
	83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	85	# optimization of OpenMP runs (option stacksize is
	86	# necessary for large gridpoint numbers because
	87	# otherwise a segmentation fault occurs)
	88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	91	# 20/09/06 - Marcus - add DVRP library on nech
	92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	93	# on local NAMELIST file ENVPAR
	94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	96	# 06/02/07 - Siggi - add DVRP library on lcmuk
	97	# 07/02/07 - Siggi - revision of source code handling, source code is
	98	# now expected in directory given by source_path and
	99	# not in the current working directory, source code
	100	# files provided in add_source_path are allways
	101	# compiled, source code to be compiled is allways
	102	# sampled in SOURCES_FOR_RUN_$fname which is a
	103	# subdirectory of the current working directory,
[5]	104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	105	# adapted for RIAM (neck)
[5]	106	# bugfix for cycle number of output file (extout)
	107	# all hpmuk-related code removed
[14]	108	# 14/02/07 - Siggi - dvrp support for neck added
[21]	109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	110	# mrun_path replaced by PALM_BIN,
	111	# all machines are calling interpret_config.x
[66]	112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	113	# output
[69]	114	# 16/03/07 - Siggi - adjustments for lctit
[78]	115	# 29/03/07 - Siggi - global revision transfered to batch job by new
	116	# option -G
[82]	117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	118	# + netcdf/dvrp-options are read from configuration
	119	# file, host identifier (local_host) is read from
	120	# config file, code related to ftp filetransfer
	121	# removed (incl. option -f)
[97]	122	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	124	# if new option -Y (coupling) is given,
	125	# output of executables to aout_output removed,
	126	# messages are immediately written to stdout instead
[108]	127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	129	# variables out to the nodes in coupled mode -disabled-
	130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	132	# environment variables out to the nodes in coupled mode
[118]	133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	134	# suggestions
[122]	135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	136	# argument -g group_number, admit all sla* node_usage
	137	# queues
[129]	138	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	139	# 14/02/08 - Bjoern - link of restart files with long file name possible
	140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	141	# true, mrun tries "ln -f" on local output and resorts
	142	# to "cp" or "cp -r" on error
[164]	143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	144	# which allows the user to choose his own job catalog
	145	# by setting job_catalog in the configuration file
	146	# (default is ~/job_queue),
[172]	147	# workaround for mpiexec with -env option,
[164]	148	# adjustments for lcxt4 (Bergen Center for Computational
	149	# Science)
[183]	150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	151	# true, mrun tries "ln -f" on local input and resorts
	152	# to "cp" or "cp -r" on error
[180]	153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	154	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	159	# argument
[211]	160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	161	# file
	162	# 11/11/08 - Siggi - rules for using user code files changed: user
	163	# code splitted into one file per subroutine,
	164	# user can provide his/her own makefile, only
	165	# default source-code filenames are allowed
[215]	166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	168	# with environment variable mpilib
[223]	169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	170	# using environment variable totalview
[246]	171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	172	# interactive runs
[253]	173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	175	# dvr streaming server is automatically started using
	176	# new variable dvr_server and a configuration file
	177	# .dvrserver.config,
[261]	178	# processing of dvr output files using new script
	179	# process_dvr_output implemented, in order to make
	180	# dvr application more user friendly
[265]	181	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	183	# to be followed by a coupled atmosphere-ocean run
[343]	184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	186	# 08/07/09 - Siggi - default value for email_notification is none,
	187	# option -e added to subjob
[359]	188	# 19/08/09 - Marcus - MPI debug option
[362]	189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	190	# 25/08/09 - BjornM - adpated for lck
[369]	191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	194	# switches on archiving, archiving on SGI-ICE enabled
[416]	195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	196	# adjustment for special1q
	197	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	200	# implemented
[493]	201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
	202	# file (modules)
[503]	203	# 02/03/10 - Siggi - for each block in the configuration file, separate
	204	# utility programs are used, combine_plot_fields is
	205	# directly called and must not be given by an output
	206	# command in the configuration file any more
[540]	207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
	208	# lcsgih/lcsgib is done using the names
	209	# hicegate0/bicegate0 instead of the IP addresses
[437]	210
	211
[1]	212
	213	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	214
	215	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	216	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	217	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	218
	219	AddFilenames=""
	220	additional_conditions=""
	221	add_source_path=""
	222	afname=""
	223	archive_save=true
	224	archive_system=none
	225	compiler_name=""
	226	cond1=""
	227	cond2=""
	228	config_file=.mrun.config
[206]	229	coupled_dist=""
	230	coupled_mode="mpi1"
[1]	231	cpp_opts=""
[82]	232	cpp_options=""
[1]	233	cpumax=0
	234	cpurest=0
	235	delete_temporary_catalog=true
	236	do_batch=false
	237	do_compile=true
	238	do_remote=false
	239	do_stagein=true
	240	do_stageout=true
	241	do_trace=false
[352]	242	email_notification="none"
[1]	243	exclude=""
	244	executable=""
	245	execution_error=false
[67]	246	fimm=false
[1]	247	fname=test
	248	fromhost=""
[78]	249	global_revision=""
[122]	250	group_number=none
[1]	251	host=""
	252	host_file=""
	253	hp=""
	254	ignore_archive_error=false
	255	input_list=""
	256	interpreted_config_file=""
[164]	257	job_catalog="~/job_queue"
[1]	258	job_on_file=""
	259	keep_data_from_previous_run=false
[183]	260	link_local_input=false
[149]	261	link_local_output=false
[1]	262	localhost_realname=$(hostname)
	263	local_compile=false
[260]	264	local_dvrserver_running=.FALSE.
[1]	265	locat=normal
	266	mainprog=""
	267	makefile=""
	268	mc=$0
	269	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	270	do
	271	mc=`echo $mc \| cut -f2- -d"/"`
	272	done
[493]	273	module_calls=""
[1]	274	mrun_script_name=$mc
[82]	275	netcdf_inc=""
	276	netcdf_lib=""
[1]	277	netcdf_support=false
	278	node_usage=default
	279	numprocs=""
[206]	280	numprocs_atmos=0
	281	numprocs_ocean=0
[1]	282	OOPT=""
	283	openmp=false
	284	output_list=""
	285	package_list=""
	286	punkte="..........................................................."
	287	queue=none
	288	read_from_config=""
[5]	289	restart_run=false
[146]	290	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	291	if [[ $return_addres = 130.75.105.158 ]]
	292	then
	293	return_addres=172.20.25.41
	294	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	295	fi
	296	return_password=""
	297	return_username=$LOGNAME
	298	remotecall=false
	299	remote_username=""
[102]	300	run_coupled_model=false
[1]	301	run_mode=""
	302	scirocco=false
[397]	303	store_on_archive_system=false
[1]	304	striche=" ----------------------------------------------------------------------------"
	305	silent=false
	306	source_list=""
	307	source_path=SOURCE
	308	tasks_per_node=""
	309	threads_per_task=1
	310	tmpcreate=false
	311	tmp_data_catalog=""
	312	transfer_problems=false
	313	usern=$LOGNAME
[377]	314	use_openmp=false
[1]	315	working_directory=`pwd`
	316	TOPT=""
	317	XOPT=""
	318	zeit=$( date \| cut -c 12-19 )
	319
	320	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	321	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	322
[66]	323	typeset -R30 calltime
[1]	324	typeset -L20 spalte1
	325	typeset -L40 spalte2
	326	typeset -L60 spalte3
	327	typeset -L35 string1=`date`
	328	typeset -L12 string2=$usern
	329	typeset -L12 string3=$localhost_realname
	330	typeset -L12 string4
	331	typeset -L12 string5
[201]	332	typeset -L30 version="MRUN 2.0 Rev$Rev: 540 $"
[1]	333
	334
	335
	336	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	337	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	338
	339	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	340	# EXPORTIERT WERDEN
	341	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	342	export group_number input_list memory numprocs output_list queue run_mode
[1]	343
	344
	345
	346	# FEHLERBEHANDLUNG
	347	# BEI EXIT:
[83]	348	trap 'rm -rf $working_directory/tmp_mrun
[69]	349	if [[ $locat != localhost ]]
[1]	350	then
[22]	351	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	352	# then
	353	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	354	#MRUN-calls on $localhost
	355	#
	356	#date and time user localhost remotehost termination mrun-command
	357	#--------------------------------------------------------------------------------------------------------------------
	358	#%STATEND%
	359	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	360	# fi
	361	#
	362	# # EINTRAG IN DIE STATISTIK-DATEI
	363	# string4=$host
	364	# string5=$locat
	365	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	366	# then
	367	# if [[ $do_batch = true ]]
	368	# then
	369	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	370	# else
	371	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	372	# fi
	373	# fi
[69]	374	echo " " > /dev/null
[1]	375	fi
	376
	377	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	378	then
	379
	380	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	381	(( i = 0 ))
	382	while (( i < iec ))
	383	do
	384	(( i = i + 1 ))
	385	printf "\n *** Execution of ERROR-command:\n"
	386	printf " >>> ${err_command[$i]}\n"
	387	eval ${err_command[$i]}
	388	done
	389	if [[ -n $interpreted_config_file ]] then
	390	rm -rf $interpreted_config_file
	391	fi
[71]	392	if [[ -n .mrun_environment ]] then
	393	rm -rf .mrun_environment
	394	fi
[1]	395	if [[ $tmpcreate = true ]]
	396	then
	397	printf "\n *** Contents of \"$TEMPDIR\":\n"
	398	ls -al; cd
	399	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	400	fi
[260]	401	if [[ "$dvrserver_id" != "" ]]
	402	then
	403	echo "+++ killing dvrserver_id=$dvrserver_id"
	404	kill $dvrserver_id
	405	fi
[1]	406	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	407	then
	408	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	409	fi
	410	printf "\n\n+++ MRUN killed \n\n"
	411	elif [[ $locat != control_c ]]
	412	then
	413	printf "\n\n --> all actions finished\n\n"
	414	printf " Bye, bye $usern !!\n\n"
	415	fi' exit
	416
	417
	418	# BEI TERMINAL-BREAK:
[83]	419	trap 'rm -rf $working_directory/tmp_mrun
[69]	420	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	421	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	422	then
	423	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	424	fi
[260]	425	if [[ "$dvrserver_id" != "" ]]
	426	then
	427	echo "+++ killing dvrserver_id=$dvrserver_id"
	428	kill $dvrserver_id
	429	fi
[1]	430	printf "\n+++ MRUN killed by \"^C\" \n\n"
	431	locat=control_c
	432	exit
	433	' 2
	434
	435
[22]	436	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	437	# BEEN SET
	438	if [[ "$PALM_BIN" = "" ]]
	439	then
	440	printf "\n +++ environment variable PALM_BIN has not been set"
	441	printf "\n please set it to the directory where the PALM scripts are located"
	442	locat=palm_bin; exit
	443	fi
[180]	444	export PATH=$PALM_BIN:$PATH
[22]	445
	446
[1]	447
	448	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	449	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	450	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	451	do
	452	case $option in
	453	(a) afname=$OPTARG;;
[397]	454	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	455	(b) do_batch=true; mc="$mc -b";;
	456	(B) delete_temporary_catalog=false; mc="$mc -B";;
	457	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	458	(C) restart_run=true; mc="$mc -C";;
[1]	459	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	460	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	461	(F) job_on_file="-D"; mc="$mc -F";;
[122]	462	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	463	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	464	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	465	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	466	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	467	(I) ignore_archive_error=true; mc="$mc -I";;
	468	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	469	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	470	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	471	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	472	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	473	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	474	(O) use_openmp=true; mc="$mc -O";;
	475	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	476	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	477	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	478	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	479	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	480	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	481	(S) read_from_config=false; mc="$mc -S";;
	482	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	483	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	484	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	485	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	486	(v) silent=true; mc="$mc -v";;
	487	(x) do_trace=true;set -x; mc="$mc -x";;
	488	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	489	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	490	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	491	(\?) printf "\n +++ unknown option $OPTARG \n"
	492	printf "\n --> type \"$0 ?\" for available options \n"
	493	locat=parameter;exit;;
	494	esac
	495	done
	496
	497
	498	# EVTL. POSITIONSPARAMETER EINLESEN
	499	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	500	shift OPTIND-1
	501
	502
	503	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	504	if [[ "$1" = "?" ]]
	505	then
	506	(printf "\n *** mrun can be called as follows:\n"
[291]	507	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	508	printf "\n Description of available options:\n"
	509	printf "\n Option Description Default-Value"
	510	printf "\n -a base name of input files equiv. -d"
[400]	511	printf "\n -A archiving when using file-attribute fl"
[1]	512	printf "\n -b batch-job on local machine ---"
	513	printf "\n -B do not delete temporary directory at end ---"
	514	printf "\n -c configuration file .mrun.config"
	515	printf "\n -d base name of files attached to program test"
	516	printf "\n -D preprocessor(cpp)-directives \"\" "
	517	printf "\n -F create remote job file only ---"
	518	printf "\n -h execution host $localhost_realname"
	519	printf "\n -i INPUT control list \"\" "
	520	printf "\n -I archiving errors of previous batch-jobs"
	521	printf "\n will be ignored"
	522	printf "\n -k keep data from previous run"
	523	printf "\n -K additional conditions for controling"
	524	printf "\n usage of conditional code and"
	525	printf "\n env-variables in configuration file \"\" "
	526	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	527	printf "\n -M Makefile name Makefile"
	528	printf "\n -n node usage (shared/not_shared) depending on -h"
	529	printf "\n -o OUTPUT control list \"\" "
	530	printf "\n -O use OpenMP ---"
	531	printf "\n -p software package list \"\" "
	532	printf "\n -q queue \"$queue\" "
	533	printf "\n -r run control list (combines -i -o) \"\" "
	534	printf "\n -s filenames of routines to be compiled \"\" "
	535	printf "\n must end with .f, .f90, .F, or .c !"
	536	printf "\n use \"..\" for more than one file and wildcards"
	537	printf "\n -s TEST compiles all files with w-permit"
	538	printf "\n -S config file interpreted by shellscript ---"
	539	printf "\n -t allowed cpu-time in seconds (batch) 0"
	540	printf "\n -T tasks per node depending on -h"
	541	printf "\n -u username on remote machine \"\" "
	542	printf "\n -v no prompt for confirmation ---"
	543	printf "\n -x tracing of mrun for debug purposes ---"
	544	printf "\n -X # of processors (on parallel machines) 1"
[291]	545	printf "\n -y add appendix \"_O\" to all local output"
	546	printf "\n files (ocean precursor runs followed by"
	547	printf "\n coupled atmosphere-ocean runs) ---"
[206]	548	printf "\n -Y run coupled model, \"#1 #2\" with"
	549	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	550	printf "\n "
	551	printf "\n Possible values of positional parameter <modus>:"
	552	printf "\n \"?\" - this outline \n\n") \| more
	553	exit
	554	elif [[ "$1" != "" ]]
	555	then
	556	printf "\n +++ positional parameter $1 unknown \n"
	557	locat=parameter; exit
	558	fi
	559
	560
	561
	562	# KURZE STARTMELDUNG
	563	printf "\n*** $version "
	564	printf "\n will be executed. Please wait ..."
	565
	566
[82]	567
	568	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	569	if [[ ! -f $config_file ]]
	570	then
	571	printf "\n\n +++ configuration file: "
	572	printf "\n $config_file"
	573	printf "\n does not exist"
	574	locat=connect; exit
	575	fi
	576
	577
	578	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	579	line=""
	580	grep "%host_identifier" $config_file > tmp_mrun
	581	while read line
	582	do
[206]	583	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	584	then
	585	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	586	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	587	if [[ $localhost_realname = $HOSTNAME ]]
[82]	588	then
	589	localhost=$host_identifier
	590	break
	591	fi
	592	fi
	593	done < tmp_mrun
	594
	595	if [[ "$localhost" = "" ]]
	596	then
	597	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	598	printf "\n for local host \"$localhost_realname\"."
	599	printf "\n Please add line"
	600	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	601	printf "\n to the configuration file."
	602	locat=localhost; exit
	603	fi
	604
	605
	606	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	607	case $localhost_realname in
[397]	608	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	609	(cs*) archive_system=ut;;
	610	(fimm.bccs.uib.no) fimm=true;;
	611	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	612	(scirocco) scirocco=true;;
	613	esac
	614
	615
	616
[1]	617	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	618	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	619	[[ "$afname" = "" ]] && afname=$fname
	620
	621
	622	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	623	if [[ "$run_mode" != "" ]]
	624	then
	625	input_list="$input_list $run_mode"
	626	output_list="$output_list $run_mode"
	627	fi
	628
	629
	630	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	631	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	632	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	633	# STARTET)
	634	if [[ "$fromhost" = "" ]]
	635	then
	636	fromhost=$localhost
	637	fi
	638
	639
	640	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	641	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	642	then
	643	source_list=TEST
	644	local_compile=true
	645	host=$localhost
	646	fi
	647
	648
	649	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	650	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	651	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	652	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	653	if [[ -n $host && "$host" != $localhost ]]
	654	then
	655	do_batch=true
	656	do_remote=true
	657	case $host in
[440]	658	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	659	(*) printf "\n"
[83]	660	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	661	printf "\n is not available"
[1]	662	locat=nqs; (( iec = 0 )); exit;;
	663	esac
	664	else
	665	host=$localhost
	666	fi
	667
	668
	669	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	670	if [[ -n $additional_conditions ]]
	671	then
[69]	672	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	673	cond1=`echo $additional_conditions \| cut -d" " -f1`
	674	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	675	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	676	if [[ -n $dummy ]]
	677	then
	678	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	679	locat=options; exit
	680	fi
[503]	681	block=_$cond1
	682	[[ -n $cond2 ]] && block=${block}_$cond2
[1]	683	fi
	684
	685
[206]	686	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	687	if [[ $run_coupled_model = true ]]
	688	then
	689
	690	if [[ -n $coupled_dist ]]
	691	then
	692
	693	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	694	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	695
	696	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	697	then
	698
	699	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	700	printf "\n PEs (total) : $numprocs"
	701	printf "\n PEs (atmosphere): $numprocs_atmos"
	702	printf "\n PEs (ocean) : $numprocs_ocean"
	703	locat=coupling; exit
	704
	705	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	706	# THIS SHOULD BE REMOVED IN FUTURE
	707	elif (( $numprocs_ocean != $numprocs_atmos ))
	708	then
	709
	710	printf "\n +++ currently only 1:1 topologies are supported"
	711	printf "\n PEs (total) : $numprocs"
	712	printf "\n PEs (atmosphere): $numprocs_atmos"
	713	printf "\n PEs (ocean) : $numprocs_ocean"
	714	(( numprocs_atmos = $numprocs / 2 ))
	715	(( numprocs_ocean = $numprocs / 2 ))
	716	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	717
	718	fi
	719
	720	else
	721
	722	(( numprocs_ocean = $numprocs / 2 ))
	723	(( numprocs_atmos = $numprocs / 2 ))
	724
	725	fi
	726	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	727
	728	# GET coupled_mode FROM THE CONFIG FILE
	729	line=""
	730	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	731	while read line
	732	do
	733	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	734	then
	735	coupled_mode="mpi2"
	736	fi
	737	done < tmp_mrun
	738
	739	fi
	740
	741
[1]	742	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	743	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	744	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	745	then
	746	if [[ $ignore_archive_error = false ]]
	747	then
	748	printf "\n +++ data archiving of previous run failed"
	749	printf "\n see directory \~/job_queue on remote machine"
	750	locat=archive; exit
	751	else
	752	printf "\n +++ warning: data archiving in a previous run failed"
	753	printf "\n MRUN continues, trying to get backup copy"
	754	fi
	755	fi
	756
	757
	758
	759	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	760	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	761	if [[ "$read_from_config" = false ]]
	762	then
	763
	764	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	765	while read zeile
	766	do
	767	[[ $silent = false ]] && printf "."
	768
	769
	770	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	771	# ERSETZEN
	772	eval zeile=\"$zeile\"
	773
	774
	775	# INTERPRETATION DER ZEILE
[21]	776	if [[ "$(echo $zeile)" = "" ]]
[1]	777	then
[21]	778	# LEERZEILE, KEINE AKTION
	779	continue
[1]	780
[21]	781	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	782	then
	783
[1]	784	# ZEILE IST KOMMENTARZEILE
	785	true
	786
	787	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	788	then
	789
	790	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	791	zeile=$(echo $zeile \| cut -c2-)
[69]	792	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	793	var=`echo $zeile \| cut -d" " -f1`
	794	value=`echo $zeile \| cut -d" " -s -f2`
	795	for_host=`echo $zeile \| cut -d" " -s -f3`
	796	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	797	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	798
	799	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	800	then
	801
	802	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	803	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	804	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	805
	806
	807	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	808	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	809	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	810	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	811	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	812	# KONFIGURATIONSDATEI
	813	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	814	then
	815	eval $var=\$value
	816
	817	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	818	if [[ $do_trace = true ]]
	819	then
	820	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	821	fi
	822	fi
	823
	824	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	825	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	826	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	827	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	828	if [[ $var = host ]]
	829	then
	830	if [[ -n $host && "$host" != $localhost ]]
	831	then
	832	do_batch=true
	833	do_remote=true
	834	case $host in
[440]	835	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[83]	836	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	837	printf "\n is not available"
[1]	838	locat=nqs; exit;;
	839	esac
	840	else
	841	host=$localhost
	842	fi
	843	fi
	844
	845	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	846	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	847	# DEN PROGRAMMEN BENOETIGT WERDEN
	848	export $var
	849	fi
	850
	851
	852
	853
	854	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	855	then
	856
	857	# ZEILE DEFINIERT ERROR-KOMMANDO
	858	(( iec = iec + 1 ))
	859	zeile=$(echo $zeile \| cut -c4-)
	860	err_command[$iec]="$zeile"
	861
	862	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	863	then
	864
	865	# ZEILE DEFINIERT INPUT-KOMMANDO
	866	(( iic = iic + 1 ))
	867	zeile=$(echo $zeile \| cut -c4-)
	868	in_command[$iic]="$zeile"
	869
	870	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	871	then
	872
	873	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	874	(( ioc = ioc + 1 ))
	875	zeile=$(echo $zeile \| cut -c4-)
	876	out_command[$ioc]="$zeile"
	877
	878	else
	879
	880	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	881	# s2a: in/out - Feld
	882	# s2b: loc - Feld (optional)
	883	# s2c: tr/ar - Feld (optional)
[69]	884	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	885	s1=`echo $zeile \| cut -d" " -f1`
	886	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	887	s2a=$(echo $s2 \| cut -d":" -f1)
	888	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	889	then
	890	s2b=""
	891	s2c=""
	892	else
[69]	893	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	894	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	895	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	896	fi
[69]	897	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	898	s3=`echo $zeile \| cut -d" " -f3`
	899	s4=`echo $zeile \| cut -d" " -s -f4`
	900	s5=`echo $zeile \| cut -d" " -s -f5`
	901	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	902
	903
	904	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	905	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	906	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	907	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	908	# HANDEN SEIN MUSS (D.H. s2b = loc)
	909	IFSALT="$IFS"; IFS="$IFS:"
	910	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	911	then
	912	found=false
	913	for actual in $input_list
	914	do
	915	for formal in $s3
	916	do
	917	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	918	done
	919	done
	920	if [[ $found = true ]]
	921	then
	922	(( iin = iin + 1 ))
	923	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	924	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	925	extin[$iin]=$s6
	926	fi
	927	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	928	then
	929	found=false
	930	for actual in $output_list
	931	do
	932	for formal in $s3
	933	do
	934	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	935	done
	936	done
	937	if [[ $found = true ]]
	938	then
	939	(( iout = iout + 1 ))
	940	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	941	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	942	fi
	943	elif [[ "$s2a" != in && "$s2a" != out ]]
	944	then
	945	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	946	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	947	locat=connect; exit
	948	fi
	949	IFS="$IFSALT"
	950	fi
	951	done < $config_file
	952
	953	else
	954
	955
	956	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	957	[[ $silent = false ]] && printf "..."
	958	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	959	export interpreted_config_file=.icf.$RANDOM
	960
	961
[69]	962
	963	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	964	# VERFUEGUNG STELLEN
	965	cat > .mrun_environment << %%END%%
	966	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	967	config_file = '$config_file', do_remote = '$do_remote',
	968	do_trace = '$do_trace', host = '$host',
	969	input_list = '$input_list', icf = '$interpreted_config_file',
	970	localhost = '$localhost', output_list = '$output_list' /
	971
	972	%%END%%
	973
	974	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	975	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	976	mrun_memory=$memory
[127]	977	mrun_group_number=$group_number
[69]	978	mrun_cpumax=$cpumax
	979	mrun_numprocs=$numprocs
	980
[251]	981	if [[ $localhost_realname = "sx-fep" ]]
[66]	982	then
[251]	983	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	984	else
[503]	985
	986	if [[ "$host" != $localhost ]]
	987	then
	988
	989	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
	990	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
	991	if [[ $? != 0 ]]
	992	then
	993	printf "\n\n +++ no interpret_config found"
	994	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
	995	locat=interpret_config; exit
	996	fi
	997	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
	998	$interpret_config_executable
	999
	1000	else
	1001
	1002	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
	1003	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
	1004	then
	1005	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
	1006	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
	1007	locat=interpret_config; exit
	1008	else
	1009	interpret_config${block}.x
	1010	fi
	1011
	1012	fi
[66]	1013	fi
[71]	1014	rm .mrun_environment
[1]	1015
[71]	1016
[1]	1017	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	1018	chmod u+x $interpreted_config_file
	1019	export PATH=$PATH:.
	1020	. $interpreted_config_file
[71]	1021	rm $interpreted_config_file
[1]	1022
[71]	1023
[69]	1024	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	1025	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	1026	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	1027	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	1028	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	1029
[1]	1030	fi
	1031
	1032
	1033	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	1034	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	1035	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	1036	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	1037	if [[ "$SOURCES_COMPLETE" = "" ]]
	1038	then
	1039
	1040	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1041	# VEREINBART WURDE
	1042	source_path=""
	1043	line=""
	1044	grep "%source_path" $config_file > tmp_mrun
	1045	while read line
	1046	do
	1047	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1048	then
	1049	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1050	then
	1051	global_source_path=`echo $line \| cut -d" " -f2`
	1052	fi
	1053	fi
	1054	done < tmp_mrun
	1055
	1056	line=""
	1057	found=false
	1058	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1059	while read line
	1060	do
	1061	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1062	then
	1063	if [[ $found = true ]]
	1064	then
	1065	printf "\n\n +++ more than one source path found in configuration file"
	1066	printf "\n for local host \"$localhost\" "
	1067	locat=source_path; exit
	1068	fi
	1069	source_path=`echo $line \| cut -d" " -f2`
	1070	found=true
	1071	fi
	1072	done < tmp_mrun
	1073	rm tmp_mrun
	1074
	1075	if [[ "$source_path" = "" ]]
	1076	then
	1077	if [[ "$global_source_path" != "" ]]
	1078	then
	1079	source_path=$global_source_path
	1080	else
	1081	printf "\n\n +++ no source path found in configuration file"
	1082	printf "\n for local host \"$localhost\" "
	1083	locat=source_path; exit
	1084	fi
	1085	fi
	1086	eval source_path=$source_path
	1087
	1088	if [[ ! -d $source_path ]]
	1089	then
	1090	printf "\n\n +++ source path \"$source_path\" on local host"
	1091	printf "\n \"$localhost\" does not exist"
	1092	locat=source_path; exit
	1093	fi
	1094
	1095	fi
	1096
	1097
[78]	1098	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1099	# DURCH OPTION -G MITGETEILT)
	1100	if [[ "$global_revision" = "" ]]
	1101	then
	1102	global_revision=`svnversion $source_path 2>/dev/null`
	1103	global_revision="Rev: $global_revision"
	1104	fi
[1]	1105
[78]	1106
[1]	1107	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1108	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1109	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1110	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1111	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1112	if [[ -n $host && "$host" != $localhost ]]
	1113	then
	1114	do_batch=true
	1115	do_remote=true
	1116	case $host in
[440]	1117	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	1118	(*) printf "\n"
[83]	1119	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1120	printf "\n is not available"
[1]	1121	locat=nqs; (( iec = 0 )); exit;;
	1122	esac
	1123	else
	1124	host=$localhost
	1125	fi
	1126
	1127
	1128	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1129	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1130	then
	1131
	1132	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1133	if [[ ! -n $numprocs ]]
	1134	then
	1135	printf "\n"
	1136	printf "\n +++ option \"-K parallel\" requires additional specification"
	1137	printf "\n of the number of processors to be used by"
	1138	printf "\n mrun-option \"-X\" or by environment-variable"
	1139	printf "\n \"numprocs\" in the configuration file"
	1140	locat=numprocs; (( iec = 0 )); exit
	1141	fi
	1142
	1143	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1144	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1145	# GESAMTPROZESSORANZAHL IST
[251]	1146	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1147	then
	1148	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1149	(( ival = $tasks_per_node ))
	1150	(( pes = numprocs ))
	1151	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1152	# then
	1153	# (( pes = pes - 1 ))
	1154	# fi
	1155	(( ii = pes / ival ))
	1156	if (( pes - ii * ival > 0 ))
	1157	then
	1158	printf "\n"
	1159	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1160	printf "\n divisor of the total number of processors (option \"-X\")"
	1161	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1162	locat=tasks_per_node; (( iec = 0 )); exit
	1163	fi
	1164	fi
	1165
	1166	# IBMY HAT NUR EINEN KNOTEN
	1167	if [[ $host = ibmy ]]
	1168	then
	1169	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1170	then
	1171	printf "\n"
	1172	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1173	printf "\n total number of processors (option \"-X\")"
	1174	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1175	locat=tasks_per_node; (( iec = 0 )); exit
	1176	fi
	1177	fi
	1178
	1179	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1180	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1181	if [[ $use_openmp = true ]]
	1182	then
	1183	threads_per_task=$tasks_per_node
	1184	tasks_per_node=1
	1185	fi
[377]	1186
	1187	# SETTINGS FOR SUBJOB-COMMAND
	1188	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1189	then
	1190	(( tp1 = tasks_per_node * threads_per_task ))
	1191	TOPT="-T $tp1"
	1192	else
	1193	TOPT="-T $tasks_per_node"
	1194	fi
[1]	1195	OOPT="-O $threads_per_task"
	1196
	1197	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1198	if [[ "$tasks_per_node" != "" ]]
	1199	then
	1200	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1201	fi
	1202
	1203	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1204	# SETZEN
	1205	if [[ $node_usage = default ]]
	1206	then
	1207	if [[ $host = ibms ]]
	1208	then
	1209	node_usage=shared
[118]	1210	elif [[ $host = lctit ]]
	1211	then
[265]	1212	node_usage=RAM64GB
[181]	1213	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1214	then
	1215	node_usage=singlejob
[1]	1216	else
	1217	node_usage=not_shared
	1218	fi
	1219	fi
[181]	1220
[265]	1221	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1222	then
	1223	printf "\n"
	1224	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1225	printf "\n \"shared\" or \"not_shared\""
	1226	locat=tasks_per_node; (( iec = 0 )); exit
	1227	fi
	1228
	1229	fi
	1230
	1231	# PRUEFEN, OB HOSTFILE EXISTIERT
	1232	if [[ -n $hostfile ]]
	1233	then
	1234	if [[ ! -f $hostfile ]]
	1235	then
	1236	printf "\n"
	1237	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1238	locat=hostfile; exit
	1239	fi
	1240	fi
	1241
	1242	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1243	if [[ $host = ibmy && $do_remote = false ]]
	1244	then
	1245	if [[ ! -f $HOME/.rhosts ]]
	1246	then
	1247	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1248	printf "\n\n *** file:"
	1249	printf "\n $HOME/.rhosts"
	1250	printf "\n was created\n"
	1251	fi
	1252	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1253	then
	1254	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1255	printf "\n\n *** file:"
	1256	printf "\n $HOME/.rhosts"
	1257	printf "\n was extended by the name of the current host\n"
	1258	fi
	1259	fi
	1260
	1261
	1262
	1263	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1264	if [[ $queue = none ]]
	1265	then
	1266	case $host in
	1267	(ibmb) if [[ $node_usage = shared ]]
	1268	then
	1269	queue=cshare
	1270	else
	1271	queue=csolo
	1272	fi;;
[312]	1273	(ibmh) queue=no_class;;
[1]	1274	(ibmy) queue=parallel;;
[440]	1275	(lckyoto) queue=ph;;
[191]	1276	(lcsgib) queue=bigq;;
	1277	(lcsgih) queue=bigq;;
[265]	1278	(lctit) queue=RAM64GB;;
[1]	1279	(nech) queue=none;;
[253]	1280	(necriam) queue=SP;;
[1]	1281	(unics) queue=unics;;
	1282	esac
	1283	fi
	1284
	1285
	1286	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1287	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1288	# ERMITTELN
	1289	(( i = 0 ))
	1290	while (( i < iin ))
	1291	do
	1292	(( i = i + 1 ))
	1293	(( maxcycle = 0 ))
	1294
	1295	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1296	if [[ "${actionin[$i]}" = di ]]
	1297	then
	1298	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1299	# REM-MASCHINE AUSWERTEN
	1300	eval filename=${pathin[$i]}/${endin[$i]}
	1301	else
	1302	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1303	# REM-MASCHINE AUSWERTEN
	1304	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1305	fi
	1306
	1307	# PRUEFEN AUF VORHANDENSEIN
	1308	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1309	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1310	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1311	then
	1312	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1313	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1314	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1315	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1316	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1317	if [[ "${transin[$i]}" != "locopt" ]]
	1318	then
	1319	printf "\n\n +++ INPUT-file: "
	1320	if [[ "${extin[$i]}" = "" ]]
	1321	then
	1322	printf "\n $filename"
	1323	else
	1324	printf "\n $filename.${extin[$i]}"
	1325	fi
	1326	printf "\n does not exist\n"
	1327	locat=input; exit
	1328	else
	1329	transin[$i]="unavailable"
	1330	fi
	1331	else
	1332
	1333	# ZYKLUSNUMMER FESTSTELLEN
	1334	ls -1 -d $filename > filelist 2>/dev/null
	1335	ls -1 -d $filename.* >> filelist 2>/dev/null
	1336	while read zeile
	1337	do
	1338	cycle=$(print $zeile \| cut -f2 -d".")
	1339	if [[ "$cycle" = "$zeile" ]]
	1340	then
	1341	(( icycle = 0 ))
	1342	elif [[ "$cycle" = "${extin[$i]}" ]]
	1343	then
	1344	(( icycle = 0 ))
	1345	else
	1346	(( icycle = $cycle ))
	1347	fi
	1348	if (( icycle > maxcycle ))
	1349	then
	1350	(( maxcycle = icycle ))
	1351	file_to_be_used=$zeile
	1352	fi
	1353	done <filelist
	1354	rm filelist
	1355
	1356	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1357	if (( maxcycle > 0 ))
	1358	then
	1359	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1360	then
	1361	filename=${filename}.$maxcycle.${extin[$i]}
	1362	else
	1363	filename=${filename}.$maxcycle
	1364	fi
	1365	else
	1366	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1367	then
	1368	filename=${filename}.${extin[$i]}
	1369	fi
	1370	fi
	1371
	1372	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1373	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1374	absnamein[$i]=$filename
	1375	if (( maxcycle > 0 ))
	1376	then
	1377	if [[ "${actionin[$i]}" = di ]]
	1378	then
	1379	frelin[$i]=${endin[$i]}.$maxcycle
	1380	else
	1381	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1382	fi
	1383	else
	1384	if [[ "${actionin[$i]}" = di ]]
	1385	then
	1386	frelin[$i]=${endin[$i]}
	1387	else
	1388	frelin[$i]=${afname}${endin[$i]}
	1389	fi
	1390	fi
	1391
	1392	fi
	1393	done
	1394
	1395
	1396	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1397	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1398	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1399	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1400	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1401	(( i = 0 ))
	1402	while (( i < iout ))
	1403	do
	1404	(( i = i + 1 ))
	1405	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1406	then
[260]	1407	if [[ "${actionout[$i]}" = tr ]]
[1]	1408	then
	1409	actionout[$i]=""
[260]	1410	elif [[ "${actionout[$i]}" = trpe ]]
	1411	then
	1412	actionout[$i]=pe
[1]	1413	elif [[ "${actionout[$i]}" = tra ]]
	1414	then
	1415	actionout[$i]=a
	1416	fi
	1417	(( maxcycle = 0 ))
	1418	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1419	eval catalogname=${pathout[$i]}
	1420	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1421	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1422	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1423	then
	1424
	1425	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1426	if cat /dev/null > $filename
	1427	then
	1428	rm $filename
	1429	else
	1430
	1431	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1432	if [[ ! -d $catalogname ]]
	1433	then
	1434	if mkdir -p $catalogname
	1435	then
	1436	printf "\n\n *** directory:"
	1437	printf "\n $catalogname"
	1438	printf "\n was created\n"
	1439	else
	1440	printf "\n\n +++ OUTPUT-file:"
	1441	printf "\n $filename"
	1442	printf "\n cannot be created, because directory does not exist"
	1443	printf "\n and cannot be created either"
	1444	printf "\n"
	1445	locat=output ; exit
	1446	fi 2>/dev/null
	1447	else
	1448	printf "\n\n +++ OUTPUT-file:"
	1449	printf "\n $filename"
	1450	printf "\n cannot be created, although directory exists"
	1451	printf "\n"
	1452	locat=output ; exit
	1453	fi
	1454	fi 2>/dev/null
	1455	else
	1456
	1457	# ZYKLUSNUMMER FESTSTELLEN
	1458	ls -1 -d $filename > filelist 2>/dev/null
	1459	ls -1 -d $filename.* >> filelist 2>/dev/null
	1460	while read zeile
	1461	do
	1462	cycle=$(print $zeile \| cut -f2 -d".")
	1463	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1464	then
	1465	(( icycle = 1 ))
	1466	else
	1467	(( icycle = $cycle + 1 ))
	1468	fi
	1469	if (( icycle > maxcycle ))
	1470	then
	1471	(( maxcycle = icycle ))
	1472	fi
	1473	done <filelist
	1474	rm filelist
	1475	fi
	1476
	1477	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1478	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1479	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1480	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1481	if [[ "${actionout[$i]}" != a ]]
	1482	then
	1483	if (( maxcycle > 0 ))
	1484	then
	1485	filename=${filename}.$maxcycle
	1486	if cat /dev/null > $filename
	1487	then
	1488	rm $filename
	1489	else
	1490	printf "\n +++ OUTPUT-file:"
	1491	printf "\n $filename"
	1492	printf "\n cannot be created"
	1493	locat=output ; exit
	1494	fi
	1495	fi
	1496	else
	1497	(( maxcycle = maxcycle - 1 ))
	1498	if (( maxcycle > 0 ))
	1499	then
	1500	filename=${filename}.$maxcycle
	1501	fi
	1502	fi
	1503
	1504	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1505	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1506	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1507	pathout[$i]=$filename
	1508	if (( maxcycle > 0 ))
	1509	then
	1510	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1511	else
	1512	frelout[$i]=${fname}${endout[$i]}
	1513	fi
	1514
	1515	fi
	1516	done
	1517
	1518
[260]	1519	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1520	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1521	then
[260]	1522	if [[ "$dvr_inc" = "" ]]
[83]	1523	then
[260]	1524	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1525	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1526	locat=dvr; exit
[83]	1527	fi
[260]	1528	if [[ "$dvr_lib" = "" ]]
[83]	1529	then
[260]	1530	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1531	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1532	locat=dvr; exit
[83]	1533	fi
	1534	fi
	1535
	1536
[1]	1537	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1538	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1539	# UEBERSETZT ZU WERDEN)
	1540	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1541	then
	1542	printf "\n +++ neither main program nor executable defined"
	1543	locat=source; exit
	1544	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1545	then
	1546	printf "\n +++ main program as well as executable defined"
	1547	locat=source; exit
	1548	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1549	then
	1550	do_compile=false
	1551	fi
	1552
	1553
[191]	1554	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1555	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1556	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1557	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1558	then
	1559	rm -rf SOURCES_FOR_RUN_$fname
	1560	mkdir SOURCES_FOR_RUN_$fname
	1561	fi
	1562
	1563
[1]	1564	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1565	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1566	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1567	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1568	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1569	then
	1570
[5]	1571	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1572	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1573
	1574
	1575	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1576	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1577	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1578	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1579	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1580	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1581	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1582	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1583	# GESAMMELT
[5]	1584	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1585	then
	1586
	1587	source_list=""
	1588	cd $source_path
	1589
	1590
	1591	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1592	Names=$(ls -1 *.f90 2>&1)
	1593	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1594	Names=$(ls -1 *.F90 2>&1)
	1595	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1596	Names=$(ls -1 *.F 2>&1)
	1597	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1598	Names=$(ls -1 *.f 2>&1)
	1599	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1600	Names=$(ls -1 *.c 2>&1)
	1601	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1602
	1603
	1604	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1605	for dateiname in $Filenames
	1606	do
	1607	if [[ -w $dateiname ]]
	1608	then
	1609	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1610	then
	1611	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1612	source_list=$source_list"$dateiname "
	1613	fi
	1614	fi
	1615	done
	1616
	1617	cd - > /dev/null
	1618
	1619
[5]	1620	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1621	then
	1622
	1623	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1624	source_list=""
	1625	cd $source_path
	1626
	1627
	1628	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1629	if [[ ! -d .svn ]]
	1630	then
	1631	printf "\n\n +++ source directory"
	1632	printf "\n \"$source_path\" "
	1633	printf "\n is not under control of \"subversion\"."
[306]	1634	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1635	fi
	1636
	1637
	1638	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1639	Filenames=""
[69]	1640	svn status > tmp_mrun
	1641	while read line
[5]	1642	do
	1643	firstc=`echo $line \| cut -c1`
	1644	if [[ $firstc = M \|\| $firstc = "?" ]]
	1645	then
	1646	Name=`echo "$line" \| cut -c8-`
	1647	extension=`echo $Name \| cut -d. -f2`
	1648	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1649	then
	1650	Filenames="$Filenames "$Name
	1651	fi
	1652	fi
[69]	1653	done < tmp_mrun
[5]	1654
	1655
	1656	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1657	for dateiname in $Filenames
	1658	do
	1659	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1660	source_list=$source_list"$dateiname "
	1661	done
	1662
	1663	cd - > /dev/null
	1664
	1665
[1]	1666	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1667	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1668	# VORHANDEN
[5]	1669	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1670	then
	1671
	1672	cd $source_path
	1673
	1674	for filename in $source_list
	1675	do
	1676
	1677	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1678	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1679	then
	1680	printf "\n +++ source code file: $filename"
	1681	printf "\n must not contain (\"/\") "
	1682	locat=source; exit
	1683	fi
	1684
	1685	if [[ ! -f $filename ]]
	1686	then
	1687	printf "\n +++ source code file: $filename"
	1688	printf "\n does not exist"
	1689	locat=source; exit
	1690	else
	1691	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1692	fi
	1693
	1694	done
	1695
	1696	cd - > /dev/null
	1697
	1698	fi
	1699
	1700
	1701	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1702	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1703	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1704	if [[ $restart_run != true ]]
[1]	1705	then
	1706
	1707	if [[ ! -f "$source_path/$mainprog" ]]
	1708	then
	1709	printf "\n\n +++ main program: $mainprog"
	1710	printf "\n does not exist in source directory"
	1711	printf "\n \"$source_path\"\n"
	1712	locat=source; exit
	1713	else
	1714	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1715	then
	1716	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1717	source_list=${mainprog}" $source_list"
	1718	fi
	1719	fi
	1720	fi
	1721
	1722
[211]	1723	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1724	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1725	if [[ "$restart_run" != true ]]
	1726	then
	1727	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1728	if [[ ! -f $makefile ]]
	1729	then
	1730	printf "\n +++ file \"$makefile\" does not exist"
	1731	locat=make; exit
	1732	else
	1733	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1734	fi
	1735	fi
	1736
	1737
[1]	1738	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1739	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1740	then
	1741
	1742	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1743	if [[ ! -d $add_source_path ]]
	1744	then
	1745	printf "\n\n +++ WARNING: additional source code directory"
	1746	printf "\n \"$add_source_path\" "
	1747	printf "\n does not exist or is not a directory."
	1748	printf "\n No source code will be used from this directory!\n"
	1749	add_source_path=""
	1750	sleep 3
	1751	else
	1752
	1753	cd $add_source_path
[211]	1754	found=false
[1]	1755
	1756	Names=$(ls -1 *.f90 2>&1)
	1757	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1758	Names=$(ls -1 *.F90 2>&1)
	1759	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1760	Names=$(ls -1 *.F 2>&1)
	1761	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1762	Names=$(ls -1 *.f 2>&1)
	1763	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1764	Names=$(ls -1 *.c 2>&1)
	1765	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1766
	1767	cd - > /dev/null
	1768	cd SOURCES_FOR_RUN_$fname
	1769
[211]	1770	# COPY MAKEFILE IF EXISTING
	1771	if [[ -f $add_source_path/Makefile ]]
	1772	then
	1773	printf "\n\n *** user Makefile from directory"
	1774	printf "\n \"$add_source_path\" is used \n"
	1775	sleep 1
	1776	cp $add_source_path/Makefile .
	1777	fi
	1778
[1]	1779	for dateiname in $AddFilenames
	1780	do
	1781	if [[ -f $dateiname ]]
	1782	then
	1783	printf "\n +++ source code file \"$dateiname\" found in additional"
	1784	printf "\n source code directory \"$add_source_path\" "
[211]	1785	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1786	printf "\n from directory \"$source_path\"."
[1]	1787	locat=source; exit
	1788	fi
	1789
	1790	cp $add_source_path/$dateiname .
	1791	source_list="$source_list $dateiname"
	1792
[211]	1793	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1794	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1795	then
	1796	printf "\n\n +++ user file \"$dateiname\" "
	1797	printf "\n is not listed in Makefile \n"
	1798	locat=source; exit
	1799	else
	1800
[1]	1801	# Default User-Interface von der Liste entfernen, falls Datei
	1802	# ein User-Interface enthaelt
[211]	1803	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1804	# then
	1805	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1806	# then
	1807	# rm -rf user_interface.f90
	1808	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1809	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1810	# printf "\n since a user-interface is found in file"
	1811	# printf "\n \"$add_source_path/$dateiname\" \n"
	1812	# sleep 3
	1813	# else
	1814	if [[ $found = false ]]
[1]	1815	then
[211]	1816	found=true
	1817	printf "\n\n *** following user file(s) added to the"
	1818	printf " files to be translated:\n "
[1]	1819	fi
[211]	1820	printf "$dateiname "
	1821	sleep 0.5
[1]	1822	fi
	1823	done
[211]	1824	[[ $found = true ]] && printf "\n"
[1]	1825	cd - > /dev/null
	1826	fi
	1827	fi
	1828
	1829
	1830	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1831	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1832	if [[ $restart_run != true && -n $package_list ]]
[1]	1833	then
	1834
	1835	cd $source_path
	1836
	1837	for package in $package_list
	1838	do
	1839
	1840	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1841
	1842	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1843	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1844	# LIEFERT
	1845	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1846
	1847
	1848	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1849	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1850	for source_list_name in $package_source_list
	1851	do
	1852	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1853	then
	1854
	1855	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1856	ending=`echo $source_list_name \| cut -f2 -d.`
	1857	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1858	then
	1859	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1860	source_list="$source_list $source_list_name"
	1861	fi
	1862	fi
	1863	done
	1864	done
	1865
	1866	cd - > /dev/null
	1867	fi
	1868
	1869
	1870	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1871	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1872	# if [[ "$restart_run" != true ]]
	1873	# then
	1874	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1875	# if [[ ! -f $makefile ]]
	1876	# then
	1877	# printf "\n +++ file \"$makefile\" does not exist"
	1878	# locat=make; exit
	1879	# else
	1880	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1881	# fi
	1882	# fi
[1]	1883
	1884	fi # do_compile=true
	1885
	1886
	1887	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1888	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1889	if [[ $do_compile = true ]]
	1890	then
	1891
	1892	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1893	# ZUSAMMENSETZEN
[83]	1894	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1895	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1896	then
[82]	1897	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1898	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1899	then
[82]	1900	cpp_options="$cpp_options -D__nec"
	1901	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1902	then
	1903	cpp_options="$cpp_options -D__lc"
[1]	1904	else
[82]	1905	cpp_options="$cpp_options -D__$localhost"
[1]	1906	fi
[83]	1907
	1908	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1909	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1910	then
[82]	1911	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1912	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1913	else
[82]	1914	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1915	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1916	fi
[83]	1917
	1918	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1919	if [[ -n $package_list ]]
	1920	then
	1921	for package in $package_list
	1922	do
	1923	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1924	then
	1925	if [[ $package != "dvrp_graphics+1PE" ]]
	1926	then
[82]	1927	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1928	else
[82]	1929	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1930	export use_seperate_pe_for_dvrp_output=true
	1931	fi
	1932	else
	1933	if [[ $package != "dvrp_graphics+1PE" ]]
	1934	then
[82]	1935	cpp_options="$cpp_options -D__$package"
[1]	1936	else
[82]	1937	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1938	export use_seperate_pe_for_dvrp_output=true
	1939	fi
	1940	fi
	1941	done
	1942	fi
[83]	1943
	1944	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1945	if [[ -n $cpp_opts ]]
	1946	then
	1947	for popts in $cpp_opts
	1948	do
[82]	1949	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1950	then
	1951	cpp_options="${cpp_options},-D__$popts=__$popts"
	1952	else
	1953	cpp_options="$cpp_options -D__$popts"
	1954	fi
[1]	1955	done
	1956	fi
	1957
	1958	else
	1959
	1960
	1961	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1962	if [[ $do_remote = false ]]
	1963	then
	1964	if [[ ! -f $executable ]]
	1965	then
	1966	printf "\n +++ executable file: $executable"
	1967	printf "\n does not exist"
	1968	locat=executable; exit
	1969	fi
	1970	fi
	1971	fi
	1972
	1973
	1974	# JOBMODUS FESTSTELLEN
	1975	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1976	then
	1977	jobmo=BATCH
	1978	else
	1979	jobmo=INTERACTIVE
	1980	fi
	1981
	1982
	1983	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1984	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1985	if [[ "$compiler_name" = "" ]]
	1986	then
[82]	1987
[220]	1988	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1989	locat=compiler_name; exit
	1990
[1]	1991	fi
	1992
	1993
[251]	1994	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1995	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1996
	1997
	1998
	1999	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	2000	kennung=$RANDOM
	2001	if [[ "$tmp_user_catalog" = "" ]]
	2002	then
[312]	2003	if [[ $localhost = ibmh ]]
[1]	2004	then
[312]	2005	tmp_user_catalog=$SCRATCH
[1]	2006	elif [[ $localhost = nech ]]
	2007	then
	2008	tmp_user_catalog=$WRKSHR
	2009	else
	2010	tmp_user_catalog=/tmp
	2011	fi
	2012	fi
	2013	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	2014
	2015
	2016	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	2017	# BESTIMMEN
	2018	if [[ "$tmp_data_catalog" = "" ]]
	2019	then
[312]	2020	if [[ $localhost = ibmb ]]
[1]	2021	then
	2022	tmp_data_catalog=$WORK/mrun_restart_data
	2023	elif [[ $localhost = nech ]]
	2024	then
	2025	tmp_data_catalog=$WRKSHR/mrun_restart_data
	2026	else
	2027	tmp_data_catalog=/tmp/mrun_restart_data
	2028	fi
	2029	fi
	2030
	2031
	2032	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	2033	# ERSETZEN
	2034	if [[ $do_remote = false && $do_compile = true ]]
	2035	then
	2036	eval fopts=\"$fopts\"
	2037	eval lopts=\"$lopts\"
	2038	fi
	2039
	2040
	2041
	2042	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2043	fopts="$fopts $netcdf_inc $dvr_inc"
	2044	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2045	ROPTS="$ropts"
[440]	2046	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
[1]	2047	then
	2048	XOPT="-X $numprocs"
	2049	fi
	2050
	2051
	2052
	2053	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2054	# GRAMM BENOETIGT
	2055	done=false
	2056	while [[ $done = false ]]
	2057	do
	2058	cputime=$cpumax
	2059	if (( $cputime == 0 ))
	2060	then
[246]	2061	if [[ $do_batch = true ]]
	2062	then
	2063	printf "\n +++ cpu-time is undefined"
	2064	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2065	printf "\n >>> "
	2066	read cputime 1>/dev/null 2>&1
	2067	else
	2068	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2069	fi
[1]	2070	else
	2071	done=true
	2072	fi
	2073	cpumax=$cputime
	2074	done
	2075
	2076	(( minuten = cputime / 60 ))
	2077	(( sekunden = cputime - minuten * 60 ))
	2078
	2079
	2080	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2081	if [[ $do_batch = true ]]
	2082	then
	2083	done=false
	2084	while [[ $done = false ]]
	2085	do
	2086	if (( memory == 0 ))
	2087	then
	2088	printf "\n +++ memory demand is undefined"
	2089	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2090	printf "\n >>> "
	2091	read memory 1>/dev/null 2>&1
	2092	else
	2093	done=true
	2094	fi
	2095	done
	2096	fi
	2097
	2098
	2099	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2100	if [[ $do_remote = true && -z $remote_username ]]
	2101	then
	2102	while [[ -z $remote_username ]]
	2103	do
	2104	printf "\n +++ username on remote host \"$host\" is undefined"
	2105	printf "\n >>> Please type username:"
	2106	printf "\n >>> "
	2107	read remote_username
	2108	done
	2109	mc="$mc -u$remote_username"
	2110	fi
	2111
[221]	2112
[493]	2113	# set module load command and export for subjob
	2114	if [[ "$modules" != "" ]]
	2115	then
	2116	export module_calls="module load ${modules};"
	2117	fi
	2118
	2119
[221]	2120	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2121	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2122	then
[493]	2123	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
	2124	then
	2125	mpilib=mpt
	2126	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
	2127	then
	2128	mpilib=mvapich
	2129	fi
[221]	2130	fi
	2131
	2132
	2133
[1]	2134	###########################################################################
	2135	# HEADER-AUSGABE
	2136	###########################################################################
	2137
	2138
	2139	calltime=$(date)
	2140	printf "\n"
	2141	# [[ $silent = false ]] && clear
	2142	printf "#--------------------------------------------------------------# \n"
	2143	printf "\| $version$calltime \| \n"
	2144	printf "\| \| \n"
	2145	spalte1="called on:"; spalte2=$localhost_realname
	2146	printf "\| $spalte1$spalte2 \| \n"
	2147	if [[ $local_compile = false ]]
	2148	then
	2149	if [[ $do_remote = true ]]
	2150	then
	2151	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2152	else
	2153	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2154	fi
	2155	else
	2156	spalte1="compiling test only!"; spalte2=""
	2157	fi
	2158	printf "\| $spalte1$spalte2 \| \n"
	2159	if [[ -n $numprocs ]]
	2160	then
	2161	spalte1="number of PEs:"; spalte2=$numprocs
	2162	printf "\| $spalte1$spalte2 \| \n"
	2163	fi
	2164	if [[ -n $tasks_per_node ]]
	2165	then
	2166	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2167	printf "\| $spalte1$spalte2 \| \n"
	2168	fi
	2169	if [[ $threads_per_task != 1 ]]
	2170	then
	2171	spalte1="threads per task:"; spalte2="$threads_per_task"
	2172	printf "\| $spalte1$spalte2 \| \n"
	2173	fi
	2174	printf "\| \| \n"
	2175	if [[ $do_compile = true ]]
	2176	then
[475]	2177	if [[ "$mopts" != "" ]]
	2178	then
[493]	2179	spalte1="make options:"; spalte2=$mopts
[475]	2180	printf "\| $spalte1$spalte2 \| \n"
	2181	zeile=$(echo "$mopts" \| cut -c41-)
	2182	while [[ "$zeile" != "" ]]
	2183	do
	2184	spalte1=""
	2185	spalte2=$zeile
	2186	printf "\| $spalte1$spalte2 \| \n"
	2187	zeile=$(echo "$zeile" \| cut -c41-)
	2188	done
	2189	fi
	2190
[493]	2191	spalte1="cpp directives:"; spalte2=$cpp_options
[1]	2192	printf "\| $spalte1$spalte2 \| \n"
[82]	2193	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2194	while [[ "$zeile" != "" ]]
	2195	do
	2196	spalte1=""
	2197	spalte2=$zeile
	2198	printf "\| $spalte1$spalte2 \| \n"
	2199	zeile=$(echo "$zeile" \| cut -c41-)
	2200	done
	2201
[493]	2202	spalte1="compiler options:"; spalte2="$fopts"
[1]	2203	printf "\| $spalte1$spalte2 \| \n"
[82]	2204	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2205	while [[ "$zeile" != "" ]]
	2206	do
	2207	spalte1=""
	2208	spalte2=$zeile
	2209	printf "\| $spalte1$spalte2 \| \n"
	2210	zeile=$(echo "$zeile" \| cut -c41-)
	2211	done
	2212
[493]	2213	spalte1="linker options:"; spalte2=$lopts
[1]	2214	printf "\| $spalte1$spalte2 \| \n"
[82]	2215	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2216	while [[ "$zeile" != "" ]]
	2217	do
	2218	spalte1=""
	2219	spalte2=$zeile
	2220	printf "\| $spalte1$spalte2 \| \n"
	2221	zeile=$(echo "$zeile" \| cut -c41-)
	2222	done
	2223
[493]	2224	spalte1="modules to be load:"; spalte2=$modules
	2225	printf "\| $spalte1$spalte2 \| \n"
	2226	zeile=$(echo "$modules" \| cut -c41-)
	2227	while [[ "$zeile" != "" ]]
	2228	do
	2229	spalte1=""
	2230	spalte2=$zeile
	2231	printf "\| $spalte1$spalte2 \| \n"
	2232	zeile=$(echo "$zeile" \| cut -c41-)
	2233	done
	2234
[1]	2235	spalte1="main program":; spalte2=$mainprog
	2236	printf "\| $spalte1$spalte2 \| \n"
	2237	else
	2238	spalte1=executable:; spalte2=$executable
	2239	printf "\| $spalte1$spalte2 \| \n"
	2240	fi
	2241	printf "\| \| \n"
	2242	spalte1="base name of files":; spalte2=$fname
	2243	printf "\| $spalte1$spalte2 \| \n"
	2244	if [[ $fname != $afname ]]
	2245	then
	2246	spalte1="base name of input files":; spalte2=$afname
	2247	printf "\| $spalte1$spalte2 \| \n"
	2248	fi
	2249	spalte1="INPUT control list":; spalte2=$input_list
	2250	printf "\| $spalte1$spalte2 \| \n"
	2251	spalte1="OUTPUT control list":; spalte2=$output_list
	2252	printf "\| $spalte1$spalte2 \| \n"
	2253
	2254	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2255	then
	2256	spalte1="memory demand / PE":; spalte2="$memory MB"
	2257	printf "\| $spalte1$spalte2 \| \n"
	2258	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2259	printf "\| $spalte1$spalte2 \| \n"
	2260	fi
	2261
	2262	if [[ $do_compile = true ]]
	2263	then
	2264	printf "\| \| \n"
	2265	printf "\| Files to be compiled: \| \n"
	2266	zeile=$source_list
	2267	while [[ "$zeile" != "" ]]
	2268	do
	2269	spalte3=$zeile
	2270	printf "\| $spalte3 \| \n"
	2271	zeile=$(echo "$zeile" \| cut -c61-)
	2272	done
	2273	fi
	2274	printf "#--------------------------------------------------------------#"
	2275
	2276
	2277
	2278	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2279	if [[ $do_trace = true ]]
	2280	then
	2281	(( i = 0 ))
	2282	while (( i < iin ))
	2283	do
	2284	(( i = i + 1 ))
	2285	if (( i == 1 ))
	2286	then
	2287	printf "\n\n >>> INPUT-file assignments:\n"
	2288	fi
	2289	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2290	done
	2291	(( i = 0 ))
	2292	while (( i < iout ))
	2293	do
	2294	(( i = i + 1 ))
	2295	if (( i == 1 ))
	2296	then
	2297	printf "\n\n >>> OUTPUT-file assignments:\n"
	2298	fi
	2299	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2300	done
	2301	(( i = 0 ))
	2302	while (( i < iic ))
	2303	do
	2304	(( i = i + 1 ))
	2305	if (( i == 1 ))
	2306	then
	2307	printf "\n\n >>> INPUT-commands:\n"
	2308	fi
	2309	printf "\n ${in_command[$i]}"
	2310	done
	2311	(( i = 0 ))
	2312	while (( i < ioc ))
	2313	do
	2314	(( i = i + 1 ))
	2315	if (( i == 1 ))
	2316	then
	2317	printf "\n\n >>> OUTPUT-commands:\n"
	2318	fi
	2319	printf "\n ${out_command[$i]}"
	2320	done
	2321	fi
	2322
	2323
	2324	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2325	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2326	then
	2327	antwort=dummy
	2328	printf "\n\n"
	2329	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2330	do
	2331	printf " >>> everything o.k. (y/n) ? "
	2332	read antwort
	2333	done
	2334	if [[ $antwort = n \|\| $antwort = N ]]
	2335	then
	2336	locat=user_abort; (( iec = 0 )); exit
	2337	fi
	2338	if [[ $do_batch = true ]]
	2339	then
	2340	printf " >>> batch-job will be created and submitted"
	2341	else
	2342	if [[ $local_compile = false ]]
	2343	then
	2344	printf " >>> MRUN will now continue to execute on this machine"
	2345	else
	2346	printf " >>> a test compilation will now be carried out on this machine"
	2347	fi
	2348	fi
	2349	fi
	2350
	2351
	2352
	2353
	2354	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2355	# CHENDE AKTIONEN DURCHGEFUEHRT
	2356	if [[ $do_batch = false ]]
	2357	then
	2358
	2359
	2360	# TEMPORAEREN KATALOG ERZEUGEN
	2361	mkdir -p $TEMPDIR
	2362	chmod go+rx $TEMPDIR
	2363	tmpcreate=true
	2364
[493]	2365	# set striping on lustre file system
	2366	# if [[ $localhost = lcsgih ]]
	2367	# then
	2368	# lfs setstripe -s 8192k -c 16 $TEMPDIR
	2369	# lfs getstripe $TEMPDIR
	2370	# fi
[1]	2371
[493]	2372
[1]	2373	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2374	# TEMPORAERES VERZEICHNIS KOPIEREN
	2375	if [[ $do_compile = true ]]
	2376	then
	2377
	2378	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2379	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2380	if [[ $localhost = nech ]]
	2381	then
	2382	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2383	if mkdir -p $TEMPDIR_COMPILE
	2384	then
	2385	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2386	printf "\n is generated as temporary directory for cross compiling\n"
	2387	else
	2388	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2389	printf "\n needed for cross compilation failed"
	2390	locat=compile
	2391	exit
	2392	fi
	2393	else
	2394	TEMPDIR_COMPILE=$TEMPDIR
	2395	fi
	2396
	2397
[82]	2398	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2399	line=""
	2400	grep "%depository_path" $config_file > tmp_mrun
	2401	while read line
	2402	do
	2403	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2404	then
	2405	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2406	then
[82]	2407	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2408	fi
[82]	2409	fi
	2410	done < tmp_mrun
[1]	2411
[82]	2412	line=""
	2413	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2414	while read line
	2415	do
	2416	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2417	then
[211]	2418	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2419	then
	2420	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2421	fi
[1]	2422	fi
[82]	2423	done < tmp_mrun
[1]	2424
[82]	2425	if [[ "$local_depository_path" = "" ]]
	2426	then
	2427	if [[ "$global_depository_path" != "" ]]
[1]	2428	then
[82]	2429	local_depository_path=$global_depository_path
[1]	2430	else
[82]	2431	printf "\n\n +++ no depository path found in configuration file"
	2432	printf "\n for local host \"$localhost\" "
	2433	printf "\n please set \"\%depository_path\" in configuration file\n"
	2434	locat=config_file; exit
[1]	2435	fi
[82]	2436	fi
	2437	eval local_depository_path=$local_depository_path
[215]	2438	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2439	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2440
[215]	2441
[82]	2442	basename=`print $mainprog \| cut -f1 -d"."`
	2443	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2444	if [[ ! -f $make_depository ]]
	2445	then
	2446	printf "\n"
	2447	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2448	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2449	else
	2450	cp $make_depository $TEMPDIR_COMPILE
[1]	2451	cd $TEMPDIR_COMPILE
[82]	2452	tar -xf $make_depository > /dev/null 2>&1
[1]	2453	cd - > /dev/null
	2454	fi
[82]	2455
	2456	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2457
[1]	2458	else
[475]	2459
[1]	2460	cp $executable ${TEMPDIR}/a.out
[475]	2461
[1]	2462	fi
	2463
	2464
	2465	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2466	cd $TEMPDIR
[1]	2467	printf "\n *** changed to temporary directory: $TEMPDIR"
	2468
	2469
	2470	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2471	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2472	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2473	# ERMITTELN
	2474	(( i = 0 ))
	2475	while (( i < iout ))
	2476	do
	2477	(( i = i + 1 ))
	2478	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2479	then
	2480	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2481	else
	2482	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2483	fi
	2484	done
	2485
	2486
	2487	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2488	if [[ $do_compile = true ]]
	2489	then
	2490
	2491
	2492	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2493	printf "\n\n\n *** compilation starts \n$striche\n"
	2494	printf " *** compilation with make using following options:\n"
[211]	2495	printf " make depository: $make_depository"
[475]	2496	if [[ "$mopts" != "" ]]
	2497	then
	2498	printf " make options: $mopts\n"
	2499	fi
[82]	2500	printf " compilername: $compiler_name\n"
[475]	2501	printf " compiler options: $fopts\n"
[493]	2502	printf " preprocessor directives: $cpp_options \n"
	2503	printf " linker options: $lopts \n"
	2504	if [[ "$modules" != "" ]]
	2505	then
	2506	printf " modules to be load: $modules \n"
	2507	fi
[82]	2508	printf " source code files: $source_list \n"
	2509
	2510	if [[ $localhost = nech ]]
[1]	2511	then
[493]	2512	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2513	cp $TEMPDIR_COMPILE/a.out .
	2514	[[ $? != 0 ]] && compile_error=true
	2515	rm -rf $TEMPDIR_COMPILE
[312]	2516	elif [[ $localhost = ibmh ]]
	2517	then
[325]	2518	printf " compiler is called via ssh on \"plogin1\" \n"
[493]	2519	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2520	[[ ! -f a.out ]] && compile_error=true
	2521	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2522	elif [[ $localhost = lcsgib ]]
	2523	then
[540]	2524	printf " compiler is called via ssh on \"bicegate0\" \n"
	2525	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2526	[[ ! -f a.out ]] && compile_error=true
	2527	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2528	elif [[ $localhost = lcsgih ]]
	2529	then
[540]	2530	printf " compiler is called via ssh on \"hicegate0\" \n"
	2531	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2532	[[ ! -f a.out ]] && compile_error=true
	2533	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2534	else
[118]	2535	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[493]	2536	[[ "$module_calls" != "" ]] && eval $module_calls
[475]	2537	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[82]	2538	fi
[1]	2539
	2540	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2541	then
	2542	printf "\n +++ error occured while compiling or linking"
	2543	locat=compile
[181]	2544
[182]	2545	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2546	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2547	# then
[181]	2548	exit
[197]	2549	# else
	2550	# locat=normal
	2551	# fi
[1]	2552	else
	2553	printf "$striche\n *** compilation finished \n"
	2554	fi
	2555	fi
	2556
	2557
	2558	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2559	if [[ $local_compile = true ]]
	2560	then
	2561	cd $HOME
	2562	rm -rf $TEMPDIR
	2563	locat=local_compile; exit
	2564	fi
	2565
	2566
	2567	# BEREITSTELLEN DER INPUT-DATEIEN
	2568	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2569	(( i = 0 ))
	2570	while (( i < iin ))
	2571	do
	2572	(( i = i + 1 ))
	2573	if (( i == 1 ))
	2574	then
	2575	printf "\n\n *** providing INPUT-files:\n$striche"
	2576	fi
	2577
	2578
	2579	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2580	if [[ "${transin[$i]}" = unavailable ]]
	2581	then
	2582	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2583	then
	2584	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2585	printf "\n is not available!"
	2586	else
	2587	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2588	printf "\n is not available!"
	2589	fi
	2590	continue
	2591	fi
	2592
	2593	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2594	files_for_pes=false; datentyp=file
	2595	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2596	then
	2597	files_for_pes=true; datentyp=directory
	2598	actionin[$i]=""
	2599	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2600	then
	2601	actionin[$i]=""
	2602	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2603	then
	2604	files_for_pes=true; datentyp=directory
	2605	actionin[$i]="ar"
	2606	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2607	then
	2608	actionin[$i]="ar"
	2609	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2610	then
	2611	files_for_pes=true; datentyp=directory
	2612	actionin[$i]="fl"
	2613	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2614	then
	2615	actionin[$i]="fl"
	2616	fi
	2617
	2618	if [[ $files_for_pes = true ]]
	2619	then
	2620	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2621	else
	2622	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2623	fi
	2624
	2625	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2626	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2627	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2628	# SERVER ZU HOLEN
	2629	if [[ "${actionin[$i]}" = fl ]]
	2630	then
	2631	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2632	if [[ $files_for_pes = false ]]
	2633	then
	2634	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2635	then
	2636	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2637	got_tmp[$i]=true
	2638	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2639	then
	2640	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2641	printf "\n *** trying to use backup copy in \"$WORK\" "
	2642	cp $WORK/${frelin[$i]} ${localin[$i]}
	2643	else
	2644	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2645	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2646	printf "\n *** trying to get copy from archive"
	2647	actionin[$i]=ar
	2648	fi
	2649	else
	2650	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2651	then
	2652	mkdir ${localin[$i]}
[149]	2653	cd $tmp_data_catalog/${frelin[$i]}
	2654	for file in $(ls *)
	2655	do
	2656	ln $file $TEMPDIR/${localin[$i]}
	2657	done
	2658	cd $TEMPDIR
[1]	2659	got_tmp[$i]=true
	2660	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2661	then
	2662	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2663	printf "\n *** trying to use backup copy in \"$WORK\" "
	2664	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2665	else
	2666	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2667	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2668	printf "\n *** trying to get copy from archive"
	2669	actionin[$i]=ar
	2670	fi
	2671	fi
	2672	fi
	2673
	2674
	2675	# DATEI LIEGT AUF ARCHIV-SERVER
	2676	if [[ "${actionin[$i]}" = ar ]]
	2677	then
	2678
	2679	if [[ $files_for_pes = false ]]
	2680	then
	2681	printf "\n file will be restored from archive-system ($archive_system)!"
	2682	else
	2683	printf "\n directory will be restored from archive-system ($archive_system)!"
	2684	fi
	2685
	2686	file_restored=false
	2687
	2688	if [[ $archive_system = asterix ]]
	2689	then
	2690	do_stagein=true
	2691	(( stagein_anz = 0 ))
	2692	while [[ $do_stagein = true ]]
	2693	do
	2694	if [[ $files_for_pes = false ]]
	2695	then
	2696	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2697	else
	2698	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2699	fi
	2700	cat STAGEIN_OUTPUT
	2701	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2702	then
	2703	file_restored=true
	2704	do_stagein=false
	2705	else
	2706	(( stagein_anz = stagein_anz + 1 ))
	2707	if (( stagein_anz == 10 ))
	2708	then
	2709	printf "\n +++ stagein stoped after 10 tries"
	2710	locat=stage
	2711	exit
	2712	fi
	2713	printf "\n +++ restoring from archive failed, trying again:"
	2714	sleep 900
	2715	fi
	2716	done
	2717	elif [[ $archive_system = DMF ]]
	2718	then
	2719	if [[ $files_for_pes = false ]]
	2720	then
	2721	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2722	locat=DMF
	2723	exit
	2724	else
	2725	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2726	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2727	file_restored=true
	2728	fi
	2729	elif [[ $archive_system = tivoli ]]
	2730	then
	2731	if [[ $files_for_pes = false ]]
	2732	then
[399]	2733	if [[ $localhost = lcsgih ]]
[1]	2734	then
[399]	2735	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2736	else
[399]	2737	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2738	fi
	2739	else
	2740	(( inode = 0 ))
	2741	while (( inode < nodes ))
	2742	do
[399]	2743	if [[ $localhost = lcsgih ]]
[1]	2744	then
[399]	2745	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2746	else
[399]	2747	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2748	fi
	2749	(( inode = inode + 1 ))
	2750	done
	2751	fi
	2752	file_restored=true
	2753	elif [[ $archive_system = ut ]]
	2754	then
	2755	if [[ $files_for_pes = false ]]
	2756	then
	2757	cp $UT/${frelin[$i]} .
	2758	else
	2759	(( inode = 0 ))
	2760	while (( inode < nodes ))
	2761	do
	2762	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2763	(( inode = inode + 1 ))
	2764	done
	2765	fi
	2766	file_restored=true
	2767	else
	2768	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2769	locat=rearchive
	2770	exit
	2771	fi
	2772
	2773	if [[ $file_restored = true ]]
	2774	then
	2775
	2776	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2777	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2778	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2779	if [[ $files_for_pes = false ]]
	2780	then
	2781	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2782	else
	2783	mkdir $tmp_data_catalog/${frelin[$i]}
	2784	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2785	fi
	2786	got_tmp[$i]=true
	2787
	2788	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2789	mv ${frelin[$i]} ${localin[$i]}
	2790
	2791	fi
	2792	fi
	2793
	2794
	2795	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2796	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2797	then
	2798
	2799	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2800	then
	2801
	2802	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2803	printf "\n file will be provided for $numprocs processors"
	2804	mkdir ${localin[$i]}
	2805	ival=$numprocs
	2806	(( ii = 0 ))
	2807	while (( ii <= ival-1 ))
	2808	do
	2809	if (( ii < 10 ))
	2810	then
	2811	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2812	elif (( ii < 100 ))
	2813	then
	2814	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2815	elif (( ii < 1000 ))
	2816	then
	2817	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2818	else
	2819	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2820	fi
	2821	(( ii = ii + 1 ))
	2822	done
	2823
	2824	else
	2825
	2826	if [[ $files_for_pes = true ]]
	2827	then
	2828
	2829	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2830	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2831	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2832	# PER MOVE UMBENANNT WERDEN
	2833	printf "\n providing $numprocs files for the respective processors"
	2834	mkdir ${localin[$i]}
[183]	2835	if [[ $link_local_input = true ]]
	2836	then
	2837	printf " using ln -f\n"
	2838	cd ${absnamein[$i]}
	2839	for file in $(ls *)
	2840	do
	2841	ln -f $file ${localin[$i]}
	2842	done
	2843	cd $TEMPDIR
	2844	fi
	2845	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2846	if [[ ! -f "${localin[$i]}/_0000" ]]
	2847	then
	2848	if [[ $link_local_input = true ]]
	2849	then
	2850	printf " ln failed for .../_0000, using cp...\n"
	2851	fi
	2852	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2853	fi
[1]	2854
	2855	else
	2856	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2857	if [[ $link_local_input = true ]]
	2858	then
	2859	printf " using ln -f\n"
	2860	ln -f ${absnamein[$i]} ${localin[$i]}
	2861	fi
	2862	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2863	if [[ ! -f "${localin[$i]}" ]]
	2864	then
	2865	if [[ $link_local_input = true ]]
	2866	then
	2867	printf " ln failed, using cp...\n"
	2868	fi
	2869	cp ${absnamein[$i]} ${localin[$i]}
	2870	fi
[1]	2871	fi
	2872	fi
	2873	fi
	2874
	2875	done
	2876	if (( i != 0 ))
	2877	then
	2878	printf "\n$striche\n *** all INPUT-files provided \n"
	2879	fi
	2880
	2881
	2882	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2883	(( i = 0 ))
	2884	while (( i < iic ))
	2885	do
	2886	(( i = i + 1 ))
	2887	if (( i == 1 ))
	2888	then
	2889	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2890	fi
	2891	printf "\n >>> ${in_command[$i]}"
	2892	eval ${in_command[$i]}
	2893	if (( i == iic ))
	2894	then
	2895	printf "\n$striche\n"
	2896	fi
	2897	done
	2898
	2899
	2900	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2901	cpurest=${cpumax}.
	2902
	2903
[260]	2904	# START DVR STREAMING SERVER
	2905	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2906	then
	2907	if [[ "$dvr_server" != "" ]]
	2908	then
	2909
	2910	printf "\n\n *** preparing the dvr streaming server configuration file"
	2911
	2912	# Check, if a dvr server is already running
	2913	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2914	if [[ "$running_dvrserver_id" != "" ]]
	2915	then
	2916
[261]	2917	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2918	printf "\n This server is used instead starting a new one!"
[261]	2919	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2920
	2921	else
	2922
	2923	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2924	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2925	then
	2926	cp ${PALM_BIN}/.dvrserver.config .
	2927
	2928	# Entering the BASEDIR, UID and GID into this file
	2929	user_id=`id -u`
	2930	group_id=`id -g`
	2931	# & is needed as seperator, because TEMPDIR contains /
	2932	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2933	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2934	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2935	mv .dvrserver.3 .dvrserver.config
	2936	rm .dvrserver.1 .dvrserver.2
	2937
	2938	# Start dvr server in background, get his id and print on terminal
	2939	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2940	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2941	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2942	local_dvrserver_running=.TRUE.
	2943	else
	2944	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2945	printf "\n \"$PALM_BIN\" "
	2946	locat=dvr
	2947	exit
	2948	fi
	2949
	2950	fi
	2951
	2952	else
	2953	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2954	fi
	2955	fi
	2956
	2957
	2958	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2959	# LESEN VON PALM)
	2960	cat > ENVPAR << %%END%%
	2961	&envpar run_identifier = '$fname', host = '$localhost',
	2962	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2963	maximum_cpu_time_allowed = ${cpumax}.,
	2964	revision = '$global_revision',
	2965	local_dvrserver_running = $local_dvrserver_running /
	2966
	2967	%%END%%
	2968
	2969
[1]	2970	# PROGRAMMSTART
	2971	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2972	PATH=$PATH:$TEMPDIR
	2973
[359]	2974	# MPI debug option (argument checking, slows down execution due to increased latency)
	2975	if [[ "$mpi_debug" = true ]]
	2976	then
	2977	export MPI_CHECK_ARGS=1
	2978	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2979	fi
	2980
[1]	2981	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2982	then
	2983	if [[ "$ENVIRONMENT" = BATCH ]]
	2984	then
[211]	2985	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2986	then
	2987	printf "\n +++ debug is allowed in interactive mode only"
	2988	locat=debug
	2989	exit
	2990	fi
[1]	2991	fi
[5]	2992	if [[ $localhost = decalpha ]]
[1]	2993	then
	2994	dxladebug a.out
	2995	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2996	then
	2997
	2998	# SETUP THE IBM MPI ENVIRONMENT
	2999	export MP_SHARED_MEMORY=yes
	3000	export AIXTHREADS_SCOPE=S
	3001	export OMP_NUM_THREADS=$threads_per_task
	3002	export AUTHSTATE=files
	3003	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3004
	3005	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	3006	export MP_ADAPTER_USE=shared
	3007	export MP_CPU_USE=multiple
	3008	export MP_TIMEOUT=1200
	3009
	3010	unset MP_TASK_AFFINITY
	3011
	3012	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	3013	#(( ii = 1 ))
	3014	#while (( ii <= $numprocs ))
	3015	#do
	3016	# echo $localhost_realname >> hostfile
	3017	# (( ii = ii + 1 ))
	3018	#done
	3019	#export MP_HOSTFILE=hostfile
	3020
	3021	if [[ "$LOADLBATCH" = yes ]]
	3022	then
	3023	totalview poe a.out $ROPTS
	3024	else
	3025	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3026	export TVDSVRLAUNCHCMD=ssh
	3027	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	3028	fi
[211]	3029	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	3030	then
	3031	# CURRENTLY NO DEBUGGER ON LCSGI
	3032	if [[ $run_coupled_model = true ]]
	3033	then
	3034	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	3035	locat=debug
	3036	exit
[223]	3037	else
	3038	echo "no_coupling" > runfile_atmos
[211]	3039	fi
	3040	(( ii = $numprocs / $threads_per_task ))
	3041	export OMP_NUM_THREADS=$threads_per_task
	3042	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	3043	if [[ $threads_per_task != 1 ]]
	3044	then
	3045	printf "\n threads per task: $threads_per_task"
	3046	fi
	3047	printf "\n\n"
[223]	3048	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3049	then
	3050	# export MPI_LAUNCH_TIMEOUT=360
	3051	if [[ "$totalview" = true ]]
	3052	then
	3053	printf "\n running totalview debugger"
	3054	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	3055	else
	3056	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3057	fi
	3058	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3059	then
	3060	# ulimit -s 300000 # A too large stack size causes problems
	3061	# export MV2_NUM_PORTS=2
	3062	# export MV2_CPU_MAPPING=0:1:2:3
[362]	3063	if [[ "$totalview" = true ]]
	3064	then
	3065	printf "\n running totalview debugger"
	3066	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	3067	else
	3068	mpiexec ./a.out $ROPTS < runfile_atmos
	3069	fi
[223]	3070	fi
[1]	3071	else
	3072	printf "\n +++ no debug available on \"$localhost\" "
	3073	printf "\n or not implemented in mrun so far"
	3074	locat=debug
	3075	exit
	3076	fi
	3077	else
	3078	if [[ -n $numprocs ]]
	3079	then
	3080	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3081	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3082	then
	3083	# SETUP THE IBM MPI ENVIRONMENT
[312]	3084	if [[ $host != ibmh ]]
	3085	then
	3086	export MP_SHARED_MEMORY=yes
	3087	export AIXTHREAD_SCOPE=S
	3088	export OMP_NUM_THREADS=$threads_per_task
	3089	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3090	export AUTHSTATE=files
	3091	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3092	# export MP_PRINTENV=yes
[1]	3093
[312]	3094	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3095	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3096	export MP_WAIT_MODE=poll
	3097	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3098	fi
[1]	3099	if [[ "$LOADLBATCH" = yes ]]
	3100	then
	3101	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3102	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3103	then
[102]	3104	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3105	else
[343]	3106	if [[ $run_coupled_model = false ]]
	3107	then
	3108	if [[ "$ocean_file_appendix" = true ]]
	3109	then
	3110	echo "precursor_ocean" > runfile_atmos
	3111	else
	3112	echo "precursor_atmos" > runfile_atmos
	3113	fi
	3114	else
	3115	(( iia = $numprocs_atmos / $threads_per_task ))
	3116	(( iio = $numprocs_ocean / $threads_per_task ))
	3117	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3118	printf "\n using $coupled_mode coupling"
	3119	printf "\n\n"
	3120	echo "coupled_run $iia $iio" > runfile_atmos
	3121	fi
	3122	poe ./a.out $ROPTS < runfile_atmos
[1]	3123	fi
	3124	else
	3125	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3126	then
[102]	3127	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3128	elif [[ $localhost = ibmy ]]
	3129	then
	3130	if [[ -f $hostfile ]]
	3131	then
	3132	cp $hostfile hostfile
	3133	else
	3134	(( ii = 1 ))
	3135	while (( ii <= $numprocs ))
	3136	do
	3137	echo $localhost_realname >> hostfile
	3138	(( ii = ii + 1 ))
	3139	done
	3140	fi
	3141	export MP_HOSTFILE=hostfile
[331]	3142	if [[ $run_coupled_model = false ]]
	3143	then
	3144	if [[ "$ocean_file_appendix" = true ]]
	3145	then
	3146	echo "precursor_ocean" > runfile_atmos
	3147	else
	3148	echo "precursor_atmos" > runfile_atmos
	3149	fi
	3150	else
	3151	(( iia = $numprocs_atmos / $threads_per_task ))
	3152	(( iio = $numprocs_ocean / $threads_per_task ))
	3153	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3154	printf "\n using $coupled_mode coupling"
	3155	printf "\n\n"
	3156	echo "coupled_run $iia $iio" > runfile_atmos
	3157	fi
	3158	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3159
[1]	3160	else
	3161	if [[ "$host_file" = "" ]]
	3162	then
	3163	printf "\n +++ no hostfile given in configuration file"
	3164	locat=config_file
	3165	exit
	3166	else
	3167	eval host_file=$host_file
	3168	fi
	3169	export MP_HOSTFILE=$host_file
[102]	3170	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3171	fi
	3172	fi
[251]	3173	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3174	then
	3175	(( ii = nodes ))
	3176	if [[ $ii = 1 ]]
	3177	then
	3178	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3179	export MPIPROGINF=YES
[61]	3180	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3181	echo "*** execution on single node with mpirun"
[102]	3182	mpirun -np $numprocs ./a.out $ROPTS
[1]	3183	else
	3184	(( i = 0 ))
	3185	while (( i < ii ))
	3186	do
	3187	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3188	(( i = i + 1 ))
	3189	done
	3190
	3191	echo "#!/bin/sh" > mpi_exec_shell
	3192	echo " " >> mpi_exec_shell
	3193	echo "set -u" >> mpi_exec_shell
	3194	echo "F_ERRCNT=0" >> mpi_exec_shell
	3195	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3196	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3197	echo "cpurest=$cpurest" >> mpi_exec_shell
	3198	echo "fname=$fname" >> mpi_exec_shell
	3199	echo "localhost=$localhost" >> mpi_exec_shell
	3200	echo "return_addres=$return_addres" >> mpi_exec_shell
	3201	echo "return_username=$return_username" >> mpi_exec_shell
	3202	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3203	echo "write_binary=$write_binary" >> mpi_exec_shell
	3204	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3205	echo " " >> mpi_exec_shell
	3206	echo "export F_ERRCNT" >> mpi_exec_shell
	3207	echo "export MPIPROGINV" >> mpi_exec_shell
	3208	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3209	echo "export cpurest" >> mpi_exec_shell
	3210	echo "export fname" >> mpi_exec_shell
	3211	echo "export localhost" >> mpi_exec_shell
	3212	echo "export return_addres" >> mpi_exec_shell
	3213	echo "export return_username" >> mpi_exec_shell
	3214	echo "export tasks_per_node" >> mpi_exec_shell
	3215	echo "export write_binary" >> mpi_exec_shell
	3216	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3217	echo " " >> mpi_exec_shell
[102]	3218	echo "exec ./a.out" >> mpi_exec_shell
[1]	3219
	3220	chmod u+x mpi_exec_shell
	3221	export MPIPROGINF=YES
	3222	mpirun -f multinode_config &
	3223	wait
	3224
	3225	fi
[440]	3226	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3227	then
	3228
	3229	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3230	# DOES NOT EXIST
[179]	3231	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3232	then
[179]	3233	if [[ -f $hostfile ]]
	3234	then
	3235	cp $hostfile hostfile
	3236	else
	3237	(( ii = 1 ))
	3238	while (( ii <= $numprocs / $threads_per_task ))
	3239	do
	3240	echo $localhost_realname >> hostfile
	3241	(( ii = ii + 1 ))
	3242	done
	3243	fi
	3244	eval zeile=\"`head -n $ii hostfile`\"
	3245	printf "\n *** running on: $zeile"
[1]	3246	fi
[179]	3247
[1]	3248	(( ii = $numprocs / $threads_per_task ))
	3249	export OMP_NUM_THREADS=$threads_per_task
[246]	3250	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3251	if [[ $threads_per_task != 1 ]]
	3252	then
[405]	3253	# increase stack size to unlimited, because large runs
	3254	# may abort otherwise
	3255	ulimit -Ss unlimited
	3256	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3257	fi
[102]	3258	if [[ $run_coupled_model = false ]]
[1]	3259	then
[291]	3260	if [[ "$ocean_file_appendix" = true ]]
	3261	then
	3262	echo "precursor_ocean" > runfile_atmos
	3263	else
	3264	echo "precursor_atmos" > runfile_atmos
	3265	fi
[102]	3266	printf "\n\n"
[179]	3267	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3268	then
[221]	3269	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3270	then
[366]	3271	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3272	# export MPI_DSM_DISTRIBUTE=1
	3273	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3274	if [[ $use_openmp = false ]]
	3275	then
[412]	3276	if [[ "$sgi_feature" = ice2 ]]
	3277	then
	3278	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3279	else
	3280	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3281	fi
[377]	3282	fi
[366]	3283	# MPI_IB_RAILS: use both IB rails on ICE2
	3284	export MPI_BUFS_PER_HOST=512
	3285	export MPI_IB_RAILS=2
[369]	3286	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3287	export MPI_CONNECTIONS_THRESHOLD=8192
[412]	3288	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[223]	3289	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3290
	3291	# next is test for openmp usage
	3292	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3293	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3294	then
[374]	3295	export MV2_NUM_PORTS=2
[376]	3296	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3297	# export MV2_ENABLE_AFFINITY=1
[376]	3298	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3299	# if [[ "$sgi_feature" = ice2 ]]
	3300	# then
	3301	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3302	# else
	3303	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3304	# fi
	3305	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[405]	3306	if [[ $threads_per_task != 1 ]]
	3307	then
	3308	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
	3309	else
	3310	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3311	fi
[221]	3312	fi
[437]	3313	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3314	then
[223]	3315	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3316	else
[223]	3317	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3318	fi
[1]	3319	else
[164]	3320
[206]	3321	# currently there is no full MPI-2 support on ICE and XT4
	3322	(( iia = $numprocs_atmos / $threads_per_task ))
	3323	(( iio = $numprocs_ocean / $threads_per_task ))
	3324	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3325	printf "\n using $coupled_mode coupling"
[102]	3326	printf "\n\n"
[164]	3327
[206]	3328	if [[ $coupled_mode = "mpi2" ]]
[164]	3329	then
[206]	3330	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3331	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3332	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3333	then
[197]	3334
[221]	3335	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3336	then
	3337	# export MPI_LAUNCH_TIMEOUT=360
	3338	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3339	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3340	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3341	then
	3342	# ulimit -s 300000 # A too large stack size causes problems
	3343	# export MV2_NUM_PORTS=2
	3344	# export MV2_CPU_MAPPING=0:1:2:3
	3345	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3346	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3347	fi
[197]	3348
[437]	3349	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3350	then
[197]	3351
[206]	3352	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3353	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3354
	3355	else
	3356	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3357	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3358	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3359	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3360	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3361	fi
	3362	wait
	3363
[164]	3364	else
	3365
[206]	3366	echo "coupled_run $iia $iio" > runfile_atmos
	3367	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3368	then
	3369
[221]	3370	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3371	then
	3372	# export MPI_LAUNCH_TIMEOUT=360
	3373	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3374	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3375	then
	3376	# ulimit -s 300000 # A too large stack size causes problems
	3377	# export MV2_NUM_PORTS=2
	3378	# export MV2_CPU_MAPPING=0:1:2:3
	3379	mpiexec ./a.out $ROPTS < runfile_atmos
	3380	fi
[206]	3381
[437]	3382	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3383	then
	3384
	3385	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3386
[367]	3387	elif [[ $host = lck ]]
	3388	then
	3389	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3390	fi
	3391	wait
[164]	3392	fi
[102]	3393
[206]	3394	fi
[1]	3395	elif [[ $host = decalpha ]]
	3396	then
[102]	3397	dmpirun -np $numprocs a.out $ROPTS
[440]	3398	elif [[ $host = lckyoto ]]
	3399	then
	3400	set -xv
	3401	export P4_RSHCOMMAND=plesh
	3402	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3403	if [[ "$ENVIRONMENT" = BATCH ]]
	3404	then
[505]	3405	if [[ "$cond2" = fujitsu ]]
	3406	then
	3407	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3408	elif [[ "cond2" = pgi ]]
	3409	then
	3410	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3411	else
	3412	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3413	fi
[440]	3414	else
[505]	3415	if [[ "$cond2" = "" ]]
	3416	then
	3417	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
	3418	else
	3419	mpirun -np $numprocs ./a.out $ROPTS
	3420	fi
[440]	3421	fi
	3422	set +xv
[1]	3423	elif [[ $host = lctit ]]
	3424	then
	3425	export runfile=runfile.$kennung
	3426
	3427	echo "cd $PWD" > $runfile
	3428	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3429	echo "export cpurest=$cpurest" >> $runfile
	3430	echo "export fname=$fname" >> $runfile
	3431	echo "export localhost=$localhost" >> $runfile
	3432	echo "export return_addres=$return_addres" >> $runfile
	3433	echo "export return_username=$return_username" >> $runfile
	3434	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3435	echo "export write_binary=$write_binary" >> $runfile
	3436	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3437	echo "./a.out" >> $runfile
	3438	chmod u+x $runfile
	3439
	3440	if [[ "$QUEUE" = interactive ]]
	3441	then
[102]	3442	mpirun -np $numprocs a.out $ROPTS
[1]	3443	else
[127]	3444	(( mem_tsubame = $memory / 1024.0 ))
	3445	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3446	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3447	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3448	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3449	fi
	3450
	3451	rm $runfile
	3452	else
[102]	3453	mpprun -n $numprocs a.out $ROPTS
[1]	3454	fi
	3455	[[ $? != 0 ]] && execution_error=true
	3456
	3457
	3458	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3459	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3460	then
	3461	apprentice
	3462	fi
	3463	else
[102]	3464	a.out $ROPTS
[1]	3465	fi
	3466	fi
	3467	if [[ $? != 0 \|\| $execution_error = true ]]
	3468	then
	3469
	3470	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3471	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3472	printf "\n +++ runtime error occured"
	3473	locat=execution
	3474	exit
	3475	else
[102]	3476	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3477	printf "\n$striche\n *** execution finished \n"
[260]	3478
[261]	3479	# Stop the dvr streaming server and process the dvr output in order
	3480	# to create dvrs- and html-files containing all streams
[260]	3481	if [[ "$dvrserver_id" != "" ]]
	3482	then
	3483	kill $dvrserver_id
	3484	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3485
[262]	3486	# If there is a directory, data have been output by the
	3487	# streaming server. Otherwise, user has chosen dvrp_output=local
	3488	if [[ -d DATA_DVR ]]
	3489	then
[261]	3490
[262]	3491	# Add the current dvr configuration file to the dvr output
	3492	# directory
	3493	cp .dvrserver.config DATA_DVR
	3494
	3495	# Process the dvr output (option -s for also generating
	3496	# sequence mode data)
	3497	process_dvr_output -d DATA_DVR -f $fname -s
	3498
	3499	else
	3500
	3501	# Process the local output
	3502	process_dvr_output -l -d DATA_DVR -f $fname
	3503
	3504	fi
	3505
	3506	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3507	then
	3508
	3509	# Process dvr output generated in local mode (dvrp_output=local)
	3510	process_dvr_output -l -d DATA_DVR -f $fname
	3511
[260]	3512	fi
[1]	3513	fi
	3514
	3515
	3516
[503]	3517	# Call of combine_plot_fields in order to merge single files written
	3518	# by each PE into one file.
	3519	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
	3520	then
	3521	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
	3522	printf "\n 2d- and/or 3d-data may be incomplete!"
	3523	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
	3524	else
	3525	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
	3526	combine_plot_fields${block}.x
	3527	fi
	3528
	3529
	3530
[1]	3531	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3532	(( i = 0 ))
	3533	while (( i < ioc ))
	3534	do
	3535	(( i = i + 1 ))
	3536	if (( i == 1 ))
	3537	then
	3538	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3539	fi
	3540	printf "\n >>> ${out_command[$i]}"
	3541	eval ${out_command[$i]}
	3542	if (( i == ioc ))
	3543	then
	3544	printf "\n$striche\n"
	3545	fi
	3546	done
	3547
	3548
	3549	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3550	if [[ $do_trace = true ]]
	3551	then
	3552	printf "\n\n"
	3553	ls -al
	3554	fi
	3555
	3556
	3557
	3558	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3559	(( i = 0 ))
	3560	while (( i < iout ))
	3561	do
	3562	(( i = i + 1 ))
	3563	if (( i == 1 ))
	3564	then
	3565	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3566	fi
	3567
	3568	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3569	files_for_pes=false; filetyp=file
	3570	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3571	then
	3572	files_for_pes=true; filetyp=directory
	3573	actionout[$i]=""
	3574	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3575	then
	3576	actionout[$i]=""
	3577	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3578	then
	3579	files_for_pes=true; filetyp=directory
	3580	actionout[$i]="ar"
	3581	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3582	then
	3583	actionout[$i]="ar"
	3584	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3585	then
	3586	files_for_pes=true; filetyp=directory
	3587	actionout[$i]="fl"
	3588	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3589	then
	3590	actionout[$i]="fl"
	3591	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3592	then
	3593	files_for_pes=true; filetyp=directory
	3594	actionout[$i]="tr"
	3595	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3596	then
	3597	actionout[$i]="tr"
	3598	fi
	3599
	3600	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3601	then
	3602	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3603	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3604	then
	3605	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3606	else
	3607
	3608
	3609	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3610	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3611	# REMOTE-RECHNUNGEN
	3612	if [[ "${actionout[$i]}" = tr ]]
	3613	then
	3614	if [[ $localhost != $fromhost ]]
	3615	then
	3616	if [[ $files_for_pes = false ]]
	3617	then
	3618	cps=""
	3619	cst=""
	3620	else
	3621	cps=-c
	3622	cst="/"
	3623	fi
[325]	3624	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3625	then
	3626
	3627	# TRANSFER IN EIGENSTAENDIGEM JOB
	3628	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3629	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3630	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3631	if [[ $files_for_pes = false ]]
	3632	then
	3633	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3634	else
	3635	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3636	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3637	fi
	3638
	3639	echo "set -x" > transfer_${localout[$i]}
	3640	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3641
	3642	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3643	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3644	printf "\n or higher cycle\n"
	3645	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3646
[1]	3647	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3648
	3649	if [[ $localhost = nech ]]
	3650	then
[82]	3651	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3652	else
	3653	if [[ "$LOGNAME" = b323013 ]]
	3654	then
[164]	3655	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3656	else
[164]	3657	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3658	fi
	3659	fi
	3660
	3661	else
	3662
	3663	# TRANSFER INNERHALB DIESES JOBS
	3664	transfer_failed=false
[82]	3665	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3666	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3667	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3668	[[ $? != 0 ]] && transfer_failed=true
[1]	3669
	3670	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3671	# LOKALER MASCHINE ANLEGEN
	3672	if [[ $transfer_failed = true ]]
	3673	then
	3674	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3675	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3676
	3677	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3678	# ANLEGEN.
	3679	eval local_catalog=${pathout[$i]}
	3680	if [[ ! -d $local_catalog ]]
	3681	then
	3682	printf " *** local directory does not exist. Trying to create:\n"
	3683	printf " $local_catalog \n"
	3684	mkdir -p $local_catalog
	3685	fi
	3686	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3687	transfer_problems=true
	3688	fi
	3689	fi
	3690	else
	3691
	3692	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3693	actionout[$i]=""
	3694	fi
	3695	fi
	3696
	3697
	3698	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3699	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3700	# REMOTE-RECHNUNGEN
	3701	if [[ "${actionout[$i]}" = tra ]]
	3702	then
	3703	if [[ $localhost != $fromhost ]]
	3704	then
	3705	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3706	then
	3707
	3708	# TRANSFER IN EIGENSTAENDIGEM JOB
	3709	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3710	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3711	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3712	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3713
	3714	echo "set -x" > transfer_${localout[$i]}
	3715	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3716
	3717	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3718	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3719	printf "\n or higher cycle\n"
	3720	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3721
[1]	3722	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3723
	3724	if [[ $localhost = nech ]]
	3725	then
[82]	3726	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3727	else
	3728	if [[ $LOGNAME = b323013 ]]
	3729	then
[164]	3730	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3731	else
[164]	3732	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3733	fi
	3734	fi
	3735
	3736	else
	3737
	3738	# TRANSFER INNERHALB DIESES JOBS
	3739	transfer_failed=false
[82]	3740	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3741	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3742	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3743	[[ $? != 0 ]] && transfer_failed=true
[1]	3744
	3745	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3746	# LOKALER MASCHINE ANLEGEN
	3747	if [[ $transfer_failed = true ]]
	3748	then
	3749	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3750	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3751
	3752	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3753	# ANLEGEN
	3754	eval local_catalog=${pathout[$i]}
	3755	if [[ ! -d $local_catalog ]]
	3756	then
	3757	printf " *** local directory does not exist. Trying to create:\n"
	3758	printf " $local_catalog \n"
	3759	mkdir -p $local_catalog
	3760	fi
	3761
	3762	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3763	transfer_problems=true
	3764	fi
	3765	fi
	3766	else
	3767
	3768	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3769	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3770	actionout[$i]=a
	3771	fi
	3772	fi
	3773
	3774
	3775	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3776	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3777	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3778	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3779	if [[ "${actionout[$i]}" = fl ]]
	3780	then
	3781	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3782	chmod g+rx $tmp_data_catalog
	3783	if [[ $files_for_pes = false ]]
	3784	then
	3785	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3786	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3787	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3788	else
	3789	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3790	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3791	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3792	cd ${localout[$i]}
	3793	for file in $(ls *)
	3794	do
	3795	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3796	done
	3797	cd $TEMPDIR
[1]	3798	fi
	3799
	3800
	3801	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3802	if [[ $store_on_archive_system = true ]]
	3803	then
	3804
	3805	if [[ $archive_system = asterix ]]
	3806	then
	3807	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3808	if [[ $files_for_pes = false ]]
	3809	then
	3810	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3811	else
	3812	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3813	fi
	3814	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3815	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3816	echo "then" >> archive_${frelout[$i]}
	3817	echo " do_stageout=false" >> archive_${frelout[$i]}
	3818	echo "else" >> archive_${frelout[$i]}
	3819	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3820	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3821	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3822	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3823	if [[ $files_for_pes = false ]]
	3824	then
	3825	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3826	else
	3827	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3828	fi
	3829	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3830	echo "fi" >> archive_${frelout[$i]}
	3831	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3832	elif [[ $archive_system = DMF ]]
	3833	then
	3834	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3835	if [[ $files_for_pes = false ]]
	3836	then
	3837	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3838	locat=DMF
	3839	exit
	3840	else
	3841	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3842	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3843	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3844	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3845	fi
	3846	elif [[ $archive_system = tivoli ]]
	3847	then
	3848	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3849	if [[ $files_for_pes = false ]]
	3850	then
	3851	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3852	echo "set -x" >> archive_${frelout[$i]}
	3853	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3854	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3855	else
	3856
	3857	echo "set -x" >> archive_${frelout[$i]}
	3858	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3859	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3860	cd $tmp_data_catalog
	3861	all_files=`ls -1 ${frelout[$i]}/*`
	3862	cd - > /dev/null
	3863	(( inode = 0 ))
	3864	(( tp1 = tasks_per_node + 1 ))
	3865	while (( inode < nodes ))
	3866	do
	3867	# echo "*** all_files = \"$all_files\" "
	3868	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3869	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3870	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3871	# echo "*** files = \"$files\" "
	3872	# echo "*** all_files = \"$all_files\" "
[416]	3873	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3874	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3875	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3876	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3877	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3878	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3879	(( inode = inode + 1 ))
	3880	done
	3881	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3882	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3883	fi
	3884	elif [[ $archive_system = ut ]]
	3885	then
	3886	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3887	if [[ $files_for_pes = false ]]
	3888	then
	3889	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3890	echo "set -x" >> archive_${frelout[$i]}
	3891	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3892	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3893	else
	3894
	3895	echo "set -x" >> archive_${frelout[$i]}
	3896	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3897	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3898	cd $tmp_data_catalog
	3899	all_files=`ls -1 ${frelout[$i]}/*`
	3900	cd - > /dev/null
	3901	(( inode = 0 ))
	3902	(( tp1 = tasks_per_node + 1 ))
	3903	while (( inode < nodes ))
	3904	do
	3905	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3906	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3907	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3908	(( inode = inode + 1 ))
	3909	done
	3910	fi
	3911	elif [[ $archive_system = none ]]
	3912	then
	3913	printf " +++ archiving on $localhost not available!\n"
	3914	fi
	3915
	3916	if [[ $archive_system != none ]]
	3917	then
[399]	3918	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3919	then
[164]	3920	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3921	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3922	elif [[ $localhost = nech ]]
	3923	then
[82]	3924	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3925	fi
	3926	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3927	fi
	3928	else
[399]	3929	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3930	fi
	3931
	3932
	3933	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3934	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3935	if [[ $files_for_pes = false ]]
	3936	then
	3937	cat /dev/null > ${pathout[$i]}
	3938	else
	3939	mkdir -p ${pathout[$i]}
	3940	fi
	3941
	3942	fi
	3943
	3944
	3945	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3946	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3947	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3948	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3949	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3950	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3951	if [[ "${actionout[$i]}" = ar ]]
	3952	then
	3953	if [[ $files_for_pes = false ]]
	3954	then
	3955	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3956	printf "\n ${pathout[$i]}"
	3957	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3958	else
	3959	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3960	printf "\n ${pathout[$i]}"
	3961	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3962	fi
	3963	mv ${localout[$i]} ${frelout[$i]}
	3964
	3965	file_saved=false
	3966
	3967	if [[ $archive_system = asterix ]]
	3968	then
	3969	do_stageout=true
	3970	(( stageout_anz = 0 ))
	3971	while [[ $do_stageout = true ]]
	3972	do
	3973	if [[ $files_for_pes = false ]]
	3974	then
	3975	stageout ${frelout[$i]} > STAGE_OUTPUT
	3976	else
	3977	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3978	fi
	3979	cat STAGE_OUTPUT
	3980	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3981	then
	3982	file_saved=true
	3983	do_stageout=false
	3984	else
	3985	if [[ $files_for_pes = false ]]
	3986	then
	3987	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3988	else
	3989	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3990	fi
	3991	(( stageout_anz = stageout_anz + 1 ))
	3992	if (( stageout_anz == 10 ))
	3993	then
	3994	printf "\n +++ stoped after 10 unsuccessful tries!"
	3995	archive_save=false
	3996	do_stageout=false
	3997	else
	3998	printf "\n *** new try to store on archive after 15 min:"
	3999	sleep 900
	4000	fi
	4001	fi
	4002	done
	4003	elif [[ $archive_system = DMF ]]
	4004	then
	4005	if [[ $files_for_pes = false ]]
	4006	then
	4007	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	4008	locat=DMF
	4009	exit
	4010	else
	4011	rm -rf $ARCHIVE/${frelout[$i]}
	4012	cp -r ${frelout[$i]} $ARCHIVE
	4013	fi
	4014	file_saved=true
	4015	elif [[ $archive_system = tivoli ]]
	4016	then
	4017	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4018	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4019	# GELEGT WERDEN
	4020	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4021	chmod g+rx $tmp_data_catalog
	4022	if [[ $files_for_pes = false ]]
	4023	then
	4024	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4025	else
	4026	mkdir $tmp_data_catalog/${frelout[$i]}
	4027	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4028	fi
	4029
	4030	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4031	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4032	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4033	if [[ $files_for_pes = false ]]
	4034	then
	4035	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4036	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4037	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	4038	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4039	else
	4040	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4041	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4042	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4043	fi
	4044
[164]	4045	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	4046	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4047	file_saved=true
	4048
	4049	elif [[ $archive_system = ut ]]
	4050	then
	4051	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	4052	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	4053	# GELEGT WERDEN
	4054	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	4055	chmod g+rx $tmp_data_catalog
	4056	if [[ $files_for_pes = false ]]
	4057	then
	4058	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	4059	else
	4060	mkdir $tmp_data_catalog/${frelout[$i]}
	4061	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	4062	fi
	4063
	4064	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	4065	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	4066	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	4067	if [[ $files_for_pes = false ]]
	4068	then
	4069	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	4070	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4071	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	4072	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4073	else
	4074	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	4075	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	4076	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	4077	fi
	4078
[82]	4079	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	4080	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	4081	file_saved=true
	4082
	4083	else
	4084	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	4085	archive_save=false
	4086	fi
	4087	if [[ $file_saved = true ]]
	4088	then
	4089	if [[ $files_for_pes = false ]]
	4090	then
	4091	cat /dev/null > ${pathout[$i]}
	4092	else
	4093	mkdir -p ${pathout[$i]}
	4094	fi
	4095	fi
	4096	fi
	4097
	4098	# APPEND AUF LOKALER MASCHINE
	4099	if [[ "${actionout[$i]}" = "a" ]]
	4100	then
	4101	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4102	cat ${localout[$i]} >> ${pathout[$i]}
	4103	fi
	4104
	4105	# KOPIEREN AUF LOKALER MASCHINE
	4106	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4107	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4108	then
	4109
	4110	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4111	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4112	then
	4113	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4114	if [[ $link_local_output = true ]]
	4115	then
	4116	printf " using ln -f\n"
	4117	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4118	fi
	4119	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4120	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4121	then
	4122	if [[ $link_local_output = true ]]
	4123	then
	4124	printf " ln failed, using cp...\n"
	4125	fi
	4126	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4127	fi
[1]	4128	else
	4129	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4130	if [[ $link_local_output = true ]]
	4131	then
	4132	printf " using ln -f\n"
	4133	ln -f ${localout[$i]} ${pathout[$i]}
	4134	fi
	4135	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4136	if [[ ! -f "${pathout[$i]}" ]]
	4137	then
	4138	if [[ $link_local_output = true ]]
	4139	then
	4140	printf " ln failed, using cp...\n"
	4141	fi
	4142	cp ${localout[$i]} ${pathout[$i]}
	4143	fi
[1]	4144	fi
	4145
	4146	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4147	then
	4148
	4149	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4150	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4151	# WIRD DANN KOPIERT
	4152	# PER MOVE UMBENANNT WERDEN
	4153	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4154	if [[ $link_local_output = true ]]
	4155	then
	4156	printf " using ln -f\n"
	4157	mkdir ${pathout[$i]}
	4158	cd ${localout[$i]}
	4159	for file in $(ls *)
	4160	do
	4161	ln -f $file ${pathout[$i]}
	4162	done
	4163	cd $TEMPDIR
	4164	fi
	4165	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4166	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4167	then
	4168	if [[ $link_local_output = true ]]
	4169	then
	4170	printf " ln failed for .../_0000, using cp...\n"
	4171	fi
	4172	cp -r ${localout[$i]} ${pathout[$i]}
	4173	fi
[1]	4174
	4175	fi
	4176	fi
	4177	done
	4178	if (( i != 0 ))
	4179	then
	4180	if [[ $transfer_problems = true ]]
	4181	then
	4182	printf "\n$striche\n *** OUTPUT-files saved"
	4183	printf "\n +++ WARNING: some data transfers failed! \n"
	4184	else
	4185	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4186	fi
	4187	fi
	4188
	4189
	4190	# EVENTUELL FOLGEJOB STARTEN
	4191	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4192	if [[ -f CONTINUE_RUN ]]
	4193	then
	4194
	4195	if [[ $archive_save = true ]]
	4196	then
	4197
	4198	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4199	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4200	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4201	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4202	# HANDEN
	4203	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4204	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4205	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4206	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4207	then
	4208	mc=`echo $mc \| sed 's/#/f/g'`
	4209	fi
	4210
	4211
	4212	# JOB STARTEN
	4213	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4214	echo " $mc"
	4215	printf "\n$striche\n"
	4216	if [[ $localhost != $fromhost ]]
	4217	then
	4218
[204]	4219	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4220	then
	4221	echo "*** ssh will be used to initiate restart-runs!"
	4222	echo " return_addres=\"$return_addres\" "
	4223	echo " return_username=\"$return_username\" "
	4224	if [[ $return_addres = 172.20.25.41 ]]
	4225	then
	4226	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4227	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4228	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4229	then
	4230	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4231	else
[33]	4232	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4233	fi
	4234	else
	4235	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4236	locat=restart; exit
	4237	fi
	4238
	4239	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4240	# DER AKTUELLE JOB ENDET
[399]	4241	if [[ $queue = special1q ]]
	4242	then
	4243	sleep 120
	4244	else
	4245	sleep 30
	4246	fi
[1]	4247
	4248	else
	4249
	4250	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4251	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4252	cd $LOCAL_PWD
[108]	4253	if [[ $localhost = lcfimm ]]
	4254	then
	4255	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4256	else
	4257	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4258	fi
[1]	4259	cd - > /dev/null
	4260	fi
	4261	printf "\n$striche\n *** restart-run initiated \n"
	4262
	4263
	4264	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4265	# GEHOLT WORDEN SIND, LOESCHEN
	4266	(( i = 0 ))
	4267	while (( i < iin ))
	4268	do
	4269	(( i = i + 1 ))
	4270	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4271	then
	4272	rm -r $tmp_data_catalog/${frelin[$i]}
	4273	fi
	4274	done
	4275
	4276	else
	4277
	4278	printf "\n +++ no restart-run possible, since errors occured"
	4279	printf "\n during the archive process"
	4280	fi
	4281
	4282	fi
	4283
	4284
	4285
	4286	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4287	if [[ "$email_notification" != "none" ]]
[1]	4288	then
	4289
	4290	if [[ $localhost != $fromhost ]]
	4291	then
	4292	if [[ -f CONTINUE_RUN ]]
	4293	then
	4294	echo "PALM restart run necessary" > email_text
	4295	echo "description header of actual run:" >> email_text
	4296	cat CONTINUE_RUN >> email_text
	4297	echo "mrun-command to restart:" >> email_text
	4298	echo "$mc" >> email_text
	4299	else
	4300	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4301	fi
	4302	mail $email_notification < email_text
	4303	printf "\n *** email notification sent to \"$email_notification\" "
	4304	fi
	4305	fi
	4306
	4307
	4308
	4309	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4310	cd $HOME
	4311	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4312
	4313	else
	4314
	4315
	4316	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4317	# CHENDE AKTIONEN DURCHGEFUEHRT
	4318
	4319	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4320	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4321	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4322	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4323	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4324	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4325	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4326	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4327	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4328	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4329	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4330	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4331	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4332	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4333	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4334	if [[ $use_openmp = true ]]
	4335	then
	4336	mrun_com=${mrun_com}" -O"
	4337	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4338	else
	4339	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4340	fi
[397]	4341	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4342	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4343	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4344	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4345	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4346	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4347	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4348	if [[ $do_remote = true ]]
	4349	then
	4350	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4351	fi
	4352
	4353
	4354	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4355	jobfile=jobfile.$RANDOM
	4356
	4357
	4358	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4359	echo "mkdir $TEMPDIR" >> $jobfile
	4360	echo "cd $TEMPDIR" >> $jobfile
	4361
	4362
	4363	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4364	if [[ $do_trace = true ]]
	4365	then
	4366	echo "set -x" >> $jobfile
	4367	else
	4368	echo "set +vx" >> $jobfile
	4369	fi
	4370
	4371
[191]	4372	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4373	# DATEI FUER DEN JOB
	4374	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4375	then
	4376
[191]	4377	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4378	# KOPIEREN
	4379	if [[ $restart_run != true ]]
	4380	then
	4381	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4382	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4383	fi
[1]	4384
[191]	4385	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4386	echo "set -x" >> $jobfile
	4387	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4388	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4389
[193]	4390	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4391	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4392	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4393	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4394	echo "execute_mrun=true" >> $jobfile
	4395	echo " " >> $jobfile
	4396
[191]	4397	else
	4398
	4399	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4400	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4401	if [[ $do_compile = true ]]
	4402	then
	4403
	4404	source_catalog=SOURCES_FOR_RUN_$fname
	4405
	4406	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4407	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4408	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4409	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4410	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4411	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4412
	4413	for filename in $source_list
	4414	do
	4415	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4416	echo "cat > $filename << \"%END%\"" >> $jobfile
	4417	cat $source_catalog/$filename >> $jobfile
	4418	echo " " >> $jobfile
	4419	echo "%END%" >> $jobfile
	4420	echo " " >> $jobfile
	4421	done
	4422
[1]	4423	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4424	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4425	cat $source_catalog/Makefile >> $jobfile
[1]	4426	echo " " >> $jobfile
	4427	echo "%END%" >> $jobfile
	4428	echo " " >> $jobfile
	4429
[191]	4430	echo "cd - > /dev/null" >> $jobfile
[1]	4431
[191]	4432	fi
[1]	4433
	4434
[191]	4435	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4436	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4437	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4438	cat $config_file >> $jobfile
	4439	echo "%END%" >> $jobfile
	4440	echo " " >> $jobfile
[1]	4441
	4442
[191]	4443	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4444	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4445	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4446	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4447	echo "%END%" >> $jobfile
	4448	if [[ $host = lctit ]]
	4449	then
	4450	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4451	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4452	fi
	4453	echo "chmod u+x $mrun_script_name" >> $jobfile
	4454	echo "execute_mrun=true" >> $jobfile
	4455	echo " " >> $jobfile
[1]	4456
	4457	fi
	4458
[191]	4459
[1]	4460	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4461	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4462	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4463	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4464	if [[ $do_remote = true ]]
	4465	then
	4466	(( i = 0 ))
	4467	while (( i < iin ))
	4468	do
	4469	(( i = i + 1 ))
	4470	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4471	if [[ "${transin[$i]}" = job ]]
	4472	then
	4473	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4474	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4475	echo " " >> $jobfile
	4476	echo "%END%" >> $jobfile
	4477	else
[82]	4478	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4479	fi
	4480
	4481	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4482	echo "if [[ \$? = 1 ]]" >> $jobfile
	4483	echo "then" >> $jobfile
	4484	echo " echo \" \" " >> $jobfile
	4485	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4486	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4487	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4488	echo " execute_mrun=false" >> $jobfile
	4489	echo "fi" >> $jobfile
	4490	done
	4491	fi
	4492
	4493	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4494	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4495	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4496	echo "export LOCAL_PWD" >> $jobfile
	4497
	4498	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4499	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4500	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4501
[66]	4502	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4503	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4504	then
	4505	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4506	fi
[1]	4507
	4508	# MRUN AUF ZIELRECHNER AUFRUFEN
	4509	echo "set -x" >> $jobfile
	4510	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4511
	4512	echo 'ls -al; echo `pwd`' >> $jobfile
	4513	echo "cd \$HOME" >> $jobfile
	4514	echo "rm -rf $TEMPDIR" >> $jobfile
	4515
	4516
	4517
	4518
	4519	# JOB PER SUBJOB STARTEN
	4520	if [[ $silent = false ]]
	4521	then
	4522	printf "\n "
	4523	else
	4524	printf "\n\n"
	4525	fi
	4526
[352]	4527	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4528	rm -rf $jobfile
	4529
	4530
	4531	fi # ENDE REMOTE-TEIL
	4532
	4533
	4534
	4535	# ENDE DER PROZEDUR

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