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source: palm/trunk/SCRIPTS/mrun @ 481

Last change on this file since 481 was 475, checked in by raasch, 15 years ago
make options can be set in configuration file; bugfix for generating serial jobs; bugfix for masked output
Property svn:keywords set to `Id Rev`
File size: 169.3 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 475 2010-02-04 02:26:16Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	193	# switches on archiving, archiving on SGI-ICE enabled
[416]	194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
	195	# adjustment for special1q
	196	# 18/12/09 - Carolin- modification of archiving (permq)
[440]	197	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	198	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
	199	# implemented
[437]	200
	201
[1]	202
	203	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	204
	205	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	206	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	207	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	208
	209	AddFilenames=""
	210	additional_conditions=""
	211	add_source_path=""
	212	afname=""
	213	archive_save=true
	214	archive_system=none
	215	compiler_name=""
	216	cond1=""
	217	cond2=""
	218	config_file=.mrun.config
[206]	219	coupled_dist=""
	220	coupled_mode="mpi1"
[1]	221	cpp_opts=""
[82]	222	cpp_options=""
[1]	223	cpumax=0
	224	cpurest=0
	225	delete_temporary_catalog=true
	226	do_batch=false
	227	do_compile=true
	228	do_remote=false
	229	do_stagein=true
	230	do_stageout=true
	231	do_trace=false
[352]	232	email_notification="none"
[1]	233	exclude=""
	234	executable=""
	235	execution_error=false
[67]	236	fimm=false
[1]	237	fname=test
	238	fromhost=""
[78]	239	global_revision=""
[122]	240	group_number=none
[1]	241	host=""
	242	host_file=""
	243	hp=""
	244	ignore_archive_error=false
	245	input_list=""
	246	interpreted_config_file=""
[164]	247	job_catalog="~/job_queue"
[1]	248	job_on_file=""
	249	keep_data_from_previous_run=false
[183]	250	link_local_input=false
[149]	251	link_local_output=false
[1]	252	localhost_realname=$(hostname)
	253	local_compile=false
[260]	254	local_dvrserver_running=.FALSE.
[1]	255	locat=normal
	256	mainprog=""
	257	makefile=""
	258	mc=$0
	259	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	260	do
	261	mc=`echo $mc \| cut -f2- -d"/"`
	262	done
	263	module_files=""
	264	mrun_script_name=$mc
[82]	265	netcdf_inc=""
	266	netcdf_lib=""
[1]	267	netcdf_support=false
	268	node_usage=default
	269	numprocs=""
[206]	270	numprocs_atmos=0
	271	numprocs_ocean=0
[1]	272	OOPT=""
	273	openmp=false
	274	output_list=""
	275	package_list=""
	276	punkte="..........................................................."
	277	queue=none
	278	read_from_config=""
[5]	279	restart_run=false
[146]	280	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	281	if [[ $return_addres = 130.75.105.158 ]]
	282	then
	283	return_addres=172.20.25.41
	284	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	285	fi
	286	return_password=""
	287	return_username=$LOGNAME
	288	remotecall=false
	289	remote_username=""
[102]	290	run_coupled_model=false
[1]	291	run_mode=""
	292	scirocco=false
[397]	293	store_on_archive_system=false
[1]	294	striche=" ----------------------------------------------------------------------------"
	295	silent=false
	296	source_list=""
	297	source_path=SOURCE
	298	tasks_per_node=""
	299	threads_per_task=1
	300	tmpcreate=false
	301	tmp_data_catalog=""
	302	transfer_problems=false
	303	usern=$LOGNAME
[377]	304	use_openmp=false
[1]	305	working_directory=`pwd`
	306	TOPT=""
	307	XOPT=""
	308	zeit=$( date \| cut -c 12-19 )
	309
	310	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	311	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	312
[66]	313	typeset -R30 calltime
[1]	314	typeset -L20 spalte1
	315	typeset -L40 spalte2
	316	typeset -L60 spalte3
	317	typeset -L35 string1=`date`
	318	typeset -L12 string2=$usern
	319	typeset -L12 string3=$localhost_realname
	320	typeset -L12 string4
	321	typeset -L12 string5
[201]	322	typeset -L30 version="MRUN 2.0 Rev$Rev: 475 $"
[1]	323
	324
	325
	326	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	327	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	328
	329	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	330	# EXPORTIERT WERDEN
	331	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	332	export group_number input_list memory numprocs output_list queue run_mode
[1]	333
	334
	335
	336	# FEHLERBEHANDLUNG
	337	# BEI EXIT:
[83]	338	trap 'rm -rf $working_directory/tmp_mrun
[69]	339	if [[ $locat != localhost ]]
[1]	340	then
[22]	341	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	342	# then
	343	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	344	#MRUN-calls on $localhost
	345	#
	346	#date and time user localhost remotehost termination mrun-command
	347	#--------------------------------------------------------------------------------------------------------------------
	348	#%STATEND%
	349	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	350	# fi
	351	#
	352	# # EINTRAG IN DIE STATISTIK-DATEI
	353	# string4=$host
	354	# string5=$locat
	355	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	356	# then
	357	# if [[ $do_batch = true ]]
	358	# then
	359	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	360	# else
	361	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	362	# fi
	363	# fi
[69]	364	echo " " > /dev/null
[1]	365	fi
	366
	367	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	368	then
	369
	370	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	371	(( i = 0 ))
	372	while (( i < iec ))
	373	do
	374	(( i = i + 1 ))
	375	printf "\n *** Execution of ERROR-command:\n"
	376	printf " >>> ${err_command[$i]}\n"
	377	eval ${err_command[$i]}
	378	done
	379	if [[ -n $interpreted_config_file ]] then
	380	rm -rf $interpreted_config_file
	381	fi
[71]	382	if [[ -n .mrun_environment ]] then
	383	rm -rf .mrun_environment
	384	fi
[1]	385	if [[ $tmpcreate = true ]]
	386	then
	387	printf "\n *** Contents of \"$TEMPDIR\":\n"
	388	ls -al; cd
	389	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	390	fi
[260]	391	if [[ "$dvrserver_id" != "" ]]
	392	then
	393	echo "+++ killing dvrserver_id=$dvrserver_id"
	394	kill $dvrserver_id
	395	fi
[1]	396	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	397	then
	398	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	399	fi
	400	printf "\n\n+++ MRUN killed \n\n"
	401	elif [[ $locat != control_c ]]
	402	then
	403	printf "\n\n --> all actions finished\n\n"
	404	printf " Bye, bye $usern !!\n\n"
	405	fi' exit
	406
	407
	408	# BEI TERMINAL-BREAK:
[83]	409	trap 'rm -rf $working_directory/tmp_mrun
[69]	410	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	411	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	412	then
	413	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	414	fi
[260]	415	if [[ "$dvrserver_id" != "" ]]
	416	then
	417	echo "+++ killing dvrserver_id=$dvrserver_id"
	418	kill $dvrserver_id
	419	fi
[1]	420	printf "\n+++ MRUN killed by \"^C\" \n\n"
	421	locat=control_c
	422	exit
	423	' 2
	424
	425
[22]	426	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	427	# BEEN SET
	428	if [[ "$PALM_BIN" = "" ]]
	429	then
	430	printf "\n +++ environment variable PALM_BIN has not been set"
	431	printf "\n please set it to the directory where the PALM scripts are located"
	432	locat=palm_bin; exit
	433	fi
[180]	434	export PATH=$PALM_BIN:$PATH
[22]	435
	436
[1]	437
	438	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	439	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	440	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	441	do
	442	case $option in
	443	(a) afname=$OPTARG;;
[397]	444	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	445	(b) do_batch=true; mc="$mc -b";;
	446	(B) delete_temporary_catalog=false; mc="$mc -B";;
	447	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	448	(C) restart_run=true; mc="$mc -C";;
[1]	449	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	450	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	451	(F) job_on_file="-D"; mc="$mc -F";;
[122]	452	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	453	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	454	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	455	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	456	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	457	(I) ignore_archive_error=true; mc="$mc -I";;
	458	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	459	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	460	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	461	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	462	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	463	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	464	(O) use_openmp=true; mc="$mc -O";;
	465	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	466	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	467	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	468	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	469	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	470	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	471	(S) read_from_config=false; mc="$mc -S";;
	472	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	473	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	474	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	475	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	476	(v) silent=true; mc="$mc -v";;
	477	(x) do_trace=true;set -x; mc="$mc -x";;
	478	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	479	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	480	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	481	(\?) printf "\n +++ unknown option $OPTARG \n"
	482	printf "\n --> type \"$0 ?\" for available options \n"
	483	locat=parameter;exit;;
	484	esac
	485	done
	486
	487
	488	# EVTL. POSITIONSPARAMETER EINLESEN
	489	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	490	shift OPTIND-1
	491
	492
	493	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	494	if [[ "$1" = "?" ]]
	495	then
	496	(printf "\n *** mrun can be called as follows:\n"
[291]	497	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	498	printf "\n Description of available options:\n"
	499	printf "\n Option Description Default-Value"
	500	printf "\n -a base name of input files equiv. -d"
[400]	501	printf "\n -A archiving when using file-attribute fl"
[1]	502	printf "\n -b batch-job on local machine ---"
	503	printf "\n -B do not delete temporary directory at end ---"
	504	printf "\n -c configuration file .mrun.config"
	505	printf "\n -d base name of files attached to program test"
	506	printf "\n -D preprocessor(cpp)-directives \"\" "
	507	printf "\n -F create remote job file only ---"
	508	printf "\n -h execution host $localhost_realname"
	509	printf "\n -i INPUT control list \"\" "
	510	printf "\n -I archiving errors of previous batch-jobs"
	511	printf "\n will be ignored"
	512	printf "\n -k keep data from previous run"
	513	printf "\n -K additional conditions for controling"
	514	printf "\n usage of conditional code and"
	515	printf "\n env-variables in configuration file \"\" "
	516	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	517	printf "\n -M Makefile name Makefile"
	518	printf "\n -n node usage (shared/not_shared) depending on -h"
	519	printf "\n -o OUTPUT control list \"\" "
	520	printf "\n -O use OpenMP ---"
	521	printf "\n -p software package list \"\" "
	522	printf "\n -q queue \"$queue\" "
	523	printf "\n -r run control list (combines -i -o) \"\" "
	524	printf "\n -s filenames of routines to be compiled \"\" "
	525	printf "\n must end with .f, .f90, .F, or .c !"
	526	printf "\n use \"..\" for more than one file and wildcards"
	527	printf "\n -s TEST compiles all files with w-permit"
	528	printf "\n -S config file interpreted by shellscript ---"
	529	printf "\n -t allowed cpu-time in seconds (batch) 0"
	530	printf "\n -T tasks per node depending on -h"
	531	printf "\n -u username on remote machine \"\" "
	532	printf "\n -v no prompt for confirmation ---"
	533	printf "\n -x tracing of mrun for debug purposes ---"
	534	printf "\n -X # of processors (on parallel machines) 1"
[291]	535	printf "\n -y add appendix \"_O\" to all local output"
	536	printf "\n files (ocean precursor runs followed by"
	537	printf "\n coupled atmosphere-ocean runs) ---"
[206]	538	printf "\n -Y run coupled model, \"#1 #2\" with"
	539	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	540	printf "\n "
	541	printf "\n Possible values of positional parameter <modus>:"
	542	printf "\n \"?\" - this outline \n\n") \| more
	543	exit
	544	elif [[ "$1" != "" ]]
	545	then
	546	printf "\n +++ positional parameter $1 unknown \n"
	547	locat=parameter; exit
	548	fi
	549
	550
	551
	552	# KURZE STARTMELDUNG
	553	printf "\n*** $version "
	554	printf "\n will be executed. Please wait ..."
	555
	556
[82]	557
	558	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	559	if [[ ! -f $config_file ]]
	560	then
	561	printf "\n\n +++ configuration file: "
	562	printf "\n $config_file"
	563	printf "\n does not exist"
	564	locat=connect; exit
	565	fi
	566
	567
	568	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	569	line=""
	570	grep "%host_identifier" $config_file > tmp_mrun
	571	while read line
	572	do
[206]	573	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	574	then
	575	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	576	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	577	if [[ $localhost_realname = $HOSTNAME ]]
[82]	578	then
	579	localhost=$host_identifier
	580	break
	581	fi
	582	fi
	583	done < tmp_mrun
	584
	585	if [[ "$localhost" = "" ]]
	586	then
	587	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	588	printf "\n for local host \"$localhost_realname\"."
	589	printf "\n Please add line"
	590	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	591	printf "\n to the configuration file."
	592	locat=localhost; exit
	593	fi
	594
	595
	596	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	597	case $localhost_realname in
[397]	598	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	599	(cs*) archive_system=ut;;
	600	(fimm.bccs.uib.no) fimm=true;;
	601	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	602	(scirocco) scirocco=true;;
	603	esac
	604
	605
	606
[1]	607	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	608	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	609	[[ "$afname" = "" ]] && afname=$fname
	610
	611
	612	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	613	if [[ "$run_mode" != "" ]]
	614	then
	615	input_list="$input_list $run_mode"
	616	output_list="$output_list $run_mode"
	617	fi
	618
	619
	620	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	621	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	622	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	623	# STARTET)
	624	if [[ "$fromhost" = "" ]]
	625	then
	626	fromhost=$localhost
	627	fi
	628
	629
	630	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	631	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	632	then
	633	source_list=TEST
	634	local_compile=true
	635	host=$localhost
	636	fi
	637
	638
	639	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	640	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	641	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	642	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	643	if [[ -n $host && "$host" != $localhost ]]
	644	then
	645	do_batch=true
	646	do_remote=true
	647	case $host in
[440]	648	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	649	(*) printf "\n"
[83]	650	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	651	printf "\n is not available"
[1]	652	locat=nqs; (( iec = 0 )); exit;;
	653	esac
	654	else
	655	host=$localhost
	656	fi
	657
	658
	659	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	660	if [[ -n $additional_conditions ]]
	661	then
[69]	662	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	663	cond1=`echo $additional_conditions \| cut -d" " -f1`
	664	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	665	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	666	if [[ -n $dummy ]]
	667	then
	668	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	669	locat=options; exit
	670	fi
	671	fi
	672
	673
[206]	674	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	675	if [[ $run_coupled_model = true ]]
	676	then
	677
	678	if [[ -n $coupled_dist ]]
	679	then
	680
	681	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	682	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	683
	684	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	685	then
	686
	687	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	688	printf "\n PEs (total) : $numprocs"
	689	printf "\n PEs (atmosphere): $numprocs_atmos"
	690	printf "\n PEs (ocean) : $numprocs_ocean"
	691	locat=coupling; exit
	692
	693	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	694	# THIS SHOULD BE REMOVED IN FUTURE
	695	elif (( $numprocs_ocean != $numprocs_atmos ))
	696	then
	697
	698	printf "\n +++ currently only 1:1 topologies are supported"
	699	printf "\n PEs (total) : $numprocs"
	700	printf "\n PEs (atmosphere): $numprocs_atmos"
	701	printf "\n PEs (ocean) : $numprocs_ocean"
	702	(( numprocs_atmos = $numprocs / 2 ))
	703	(( numprocs_ocean = $numprocs / 2 ))
	704	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	705
	706	fi
	707
	708	else
	709
	710	(( numprocs_ocean = $numprocs / 2 ))
	711	(( numprocs_atmos = $numprocs / 2 ))
	712
	713	fi
	714	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	715
	716	# GET coupled_mode FROM THE CONFIG FILE
	717	line=""
	718	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	719	while read line
	720	do
	721	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	722	then
	723	coupled_mode="mpi2"
	724	fi
	725	done < tmp_mrun
	726
	727	fi
	728
	729
[1]	730	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	731	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	732	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	733	then
	734	if [[ $ignore_archive_error = false ]]
	735	then
	736	printf "\n +++ data archiving of previous run failed"
	737	printf "\n see directory \~/job_queue on remote machine"
	738	locat=archive; exit
	739	else
	740	printf "\n +++ warning: data archiving in a previous run failed"
	741	printf "\n MRUN continues, trying to get backup copy"
	742	fi
	743	fi
	744
	745
	746
	747	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	748	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	749	if [[ "$read_from_config" = false ]]
	750	then
	751
	752	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	753	while read zeile
	754	do
	755	[[ $silent = false ]] && printf "."
	756
	757
	758	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	759	# ERSETZEN
	760	eval zeile=\"$zeile\"
	761
	762
	763	# INTERPRETATION DER ZEILE
[21]	764	if [[ "$(echo $zeile)" = "" ]]
[1]	765	then
[21]	766	# LEERZEILE, KEINE AKTION
	767	continue
[1]	768
[21]	769	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	770	then
	771
[1]	772	# ZEILE IST KOMMENTARZEILE
	773	true
	774
	775	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	776	then
	777
	778	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	779	zeile=$(echo $zeile \| cut -c2-)
[69]	780	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	781	var=`echo $zeile \| cut -d" " -f1`
	782	value=`echo $zeile \| cut -d" " -s -f2`
	783	for_host=`echo $zeile \| cut -d" " -s -f3`
	784	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	785	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	786
	787	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	788	then
	789
	790	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	791	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	792	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	793
	794
	795	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	796	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	797	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	798	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	799	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	800	# KONFIGURATIONSDATEI
	801	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	802	then
	803	eval $var=\$value
	804
	805	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	806	if [[ $do_trace = true ]]
	807	then
	808	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	809	fi
	810	fi
	811
	812	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	813	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	814	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	815	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	816	if [[ $var = host ]]
	817	then
	818	if [[ -n $host && "$host" != $localhost ]]
	819	then
	820	do_batch=true
	821	do_remote=true
	822	case $host in
[440]	823	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[83]	824	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	825	printf "\n is not available"
[1]	826	locat=nqs; exit;;
	827	esac
	828	else
	829	host=$localhost
	830	fi
	831	fi
	832
	833	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	834	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	835	# DEN PROGRAMMEN BENOETIGT WERDEN
	836	export $var
	837	fi
	838
	839
	840
	841
	842	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	843	then
	844
	845	# ZEILE DEFINIERT ERROR-KOMMANDO
	846	(( iec = iec + 1 ))
	847	zeile=$(echo $zeile \| cut -c4-)
	848	err_command[$iec]="$zeile"
	849
	850	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	851	then
	852
	853	# ZEILE DEFINIERT INPUT-KOMMANDO
	854	(( iic = iic + 1 ))
	855	zeile=$(echo $zeile \| cut -c4-)
	856	in_command[$iic]="$zeile"
	857
	858	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	859	then
	860
	861	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	862	(( ioc = ioc + 1 ))
	863	zeile=$(echo $zeile \| cut -c4-)
	864	out_command[$ioc]="$zeile"
	865
	866	else
	867
	868	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	869	# s2a: in/out - Feld
	870	# s2b: loc - Feld (optional)
	871	# s2c: tr/ar - Feld (optional)
[69]	872	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	873	s1=`echo $zeile \| cut -d" " -f1`
	874	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	875	s2a=$(echo $s2 \| cut -d":" -f1)
	876	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	877	then
	878	s2b=""
	879	s2c=""
	880	else
[69]	881	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	882	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	883	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	884	fi
[69]	885	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	886	s3=`echo $zeile \| cut -d" " -f3`
	887	s4=`echo $zeile \| cut -d" " -s -f4`
	888	s5=`echo $zeile \| cut -d" " -s -f5`
	889	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	890
	891
	892	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	893	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	894	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	895	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	896	# HANDEN SEIN MUSS (D.H. s2b = loc)
	897	IFSALT="$IFS"; IFS="$IFS:"
	898	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	899	then
	900	found=false
	901	for actual in $input_list
	902	do
	903	for formal in $s3
	904	do
	905	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	906	done
	907	done
	908	if [[ $found = true ]]
	909	then
	910	(( iin = iin + 1 ))
	911	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	912	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	913	extin[$iin]=$s6
	914	fi
	915	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	916	then
	917	found=false
	918	for actual in $output_list
	919	do
	920	for formal in $s3
	921	do
	922	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	923	done
	924	done
	925	if [[ $found = true ]]
	926	then
	927	(( iout = iout + 1 ))
	928	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	929	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	930	fi
	931	elif [[ "$s2a" != in && "$s2a" != out ]]
	932	then
	933	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	934	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	935	locat=connect; exit
	936	fi
	937	IFS="$IFSALT"
	938	fi
	939	done < $config_file
	940
	941	else
	942
	943
	944	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	945	[[ $silent = false ]] && printf "..."
	946	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	947	export interpreted_config_file=.icf.$RANDOM
	948
	949
[69]	950
	951	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	952	# VERFUEGUNG STELLEN
	953	cat > .mrun_environment << %%END%%
	954	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	955	config_file = '$config_file', do_remote = '$do_remote',
	956	do_trace = '$do_trace', host = '$host',
	957	input_list = '$input_list', icf = '$interpreted_config_file',
	958	localhost = '$localhost', output_list = '$output_list' /
	959
	960	%%END%%
	961
	962	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	963	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	964	mrun_memory=$memory
[127]	965	mrun_group_number=$group_number
[69]	966	mrun_cpumax=$cpumax
	967	mrun_numprocs=$numprocs
	968
[251]	969	if [[ $localhost_realname = "sx-fep" ]]
[66]	970	then
[251]	971	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	972	else
	973	interpret_config.x
	974	fi
[71]	975	rm .mrun_environment
[1]	976
[71]	977
[1]	978	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	979	chmod u+x $interpreted_config_file
	980	export PATH=$PATH:.
	981	. $interpreted_config_file
[71]	982	rm $interpreted_config_file
[1]	983
[71]	984
[69]	985	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	986	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	987	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	988	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	989	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	990
[1]	991	fi
	992
	993
	994	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	995	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	996	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	997	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	998	if [[ "$SOURCES_COMPLETE" = "" ]]
	999	then
	1000
	1001	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	1002	# VEREINBART WURDE
	1003	source_path=""
	1004	line=""
	1005	grep "%source_path" $config_file > tmp_mrun
	1006	while read line
	1007	do
	1008	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1009	then
	1010	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1011	then
	1012	global_source_path=`echo $line \| cut -d" " -f2`
	1013	fi
	1014	fi
	1015	done < tmp_mrun
	1016
	1017	line=""
	1018	found=false
	1019	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1020	while read line
	1021	do
	1022	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1023	then
	1024	if [[ $found = true ]]
	1025	then
	1026	printf "\n\n +++ more than one source path found in configuration file"
	1027	printf "\n for local host \"$localhost\" "
	1028	locat=source_path; exit
	1029	fi
	1030	source_path=`echo $line \| cut -d" " -f2`
	1031	found=true
	1032	fi
	1033	done < tmp_mrun
	1034	rm tmp_mrun
	1035
	1036	if [[ "$source_path" = "" ]]
	1037	then
	1038	if [[ "$global_source_path" != "" ]]
	1039	then
	1040	source_path=$global_source_path
	1041	else
	1042	printf "\n\n +++ no source path found in configuration file"
	1043	printf "\n for local host \"$localhost\" "
	1044	locat=source_path; exit
	1045	fi
	1046	fi
	1047	eval source_path=$source_path
	1048
	1049	if [[ ! -d $source_path ]]
	1050	then
	1051	printf "\n\n +++ source path \"$source_path\" on local host"
	1052	printf "\n \"$localhost\" does not exist"
	1053	locat=source_path; exit
	1054	fi
	1055
	1056	fi
	1057
	1058
[78]	1059	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1060	# DURCH OPTION -G MITGETEILT)
	1061	if [[ "$global_revision" = "" ]]
	1062	then
	1063	global_revision=`svnversion $source_path 2>/dev/null`
	1064	global_revision="Rev: $global_revision"
	1065	fi
[1]	1066
[78]	1067
[1]	1068	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1069	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1070	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1071	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1072	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1073	if [[ -n $host && "$host" != $localhost ]]
	1074	then
	1075	do_batch=true
	1076	do_remote=true
	1077	case $host in
[440]	1078	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
[1]	1079	(*) printf "\n"
[83]	1080	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1081	printf "\n is not available"
[1]	1082	locat=nqs; (( iec = 0 )); exit;;
	1083	esac
	1084	else
	1085	host=$localhost
	1086	fi
	1087
	1088
	1089	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1090	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1091	then
	1092
	1093	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1094	if [[ ! -n $numprocs ]]
	1095	then
	1096	printf "\n"
	1097	printf "\n +++ option \"-K parallel\" requires additional specification"
	1098	printf "\n of the number of processors to be used by"
	1099	printf "\n mrun-option \"-X\" or by environment-variable"
	1100	printf "\n \"numprocs\" in the configuration file"
	1101	locat=numprocs; (( iec = 0 )); exit
	1102	fi
	1103
	1104	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1105	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1106	# GESAMTPROZESSORANZAHL IST
[251]	1107	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1108	then
	1109	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1110	(( ival = $tasks_per_node ))
	1111	(( pes = numprocs ))
	1112	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1113	# then
	1114	# (( pes = pes - 1 ))
	1115	# fi
	1116	(( ii = pes / ival ))
	1117	if (( pes - ii * ival > 0 ))
	1118	then
	1119	printf "\n"
	1120	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1121	printf "\n divisor of the total number of processors (option \"-X\")"
	1122	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1123	locat=tasks_per_node; (( iec = 0 )); exit
	1124	fi
	1125	fi
	1126
	1127	# IBMY HAT NUR EINEN KNOTEN
	1128	if [[ $host = ibmy ]]
	1129	then
	1130	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1131	then
	1132	printf "\n"
	1133	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1134	printf "\n total number of processors (option \"-X\")"
	1135	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1136	locat=tasks_per_node; (( iec = 0 )); exit
	1137	fi
	1138	fi
	1139
	1140	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1141	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1142	if [[ $use_openmp = true ]]
	1143	then
	1144	threads_per_task=$tasks_per_node
	1145	tasks_per_node=1
	1146	fi
[377]	1147
	1148	# SETTINGS FOR SUBJOB-COMMAND
	1149	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1150	then
	1151	(( tp1 = tasks_per_node * threads_per_task ))
	1152	TOPT="-T $tp1"
	1153	else
	1154	TOPT="-T $tasks_per_node"
	1155	fi
[1]	1156	OOPT="-O $threads_per_task"
	1157
	1158	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1159	if [[ "$tasks_per_node" != "" ]]
	1160	then
	1161	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1162	fi
	1163
	1164	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1165	# SETZEN
	1166	if [[ $node_usage = default ]]
	1167	then
	1168	if [[ $host = ibms ]]
	1169	then
	1170	node_usage=shared
[118]	1171	elif [[ $host = lctit ]]
	1172	then
[265]	1173	node_usage=RAM64GB
[181]	1174	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1175	then
	1176	node_usage=singlejob
[1]	1177	else
	1178	node_usage=not_shared
	1179	fi
	1180	fi
[181]	1181
[265]	1182	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1183	then
	1184	printf "\n"
	1185	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1186	printf "\n \"shared\" or \"not_shared\""
	1187	locat=tasks_per_node; (( iec = 0 )); exit
	1188	fi
	1189
	1190	fi
	1191
	1192	# PRUEFEN, OB HOSTFILE EXISTIERT
	1193	if [[ -n $hostfile ]]
	1194	then
	1195	if [[ ! -f $hostfile ]]
	1196	then
	1197	printf "\n"
	1198	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1199	locat=hostfile; exit
	1200	fi
	1201	fi
	1202
	1203	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1204	if [[ $host = ibmy && $do_remote = false ]]
	1205	then
	1206	if [[ ! -f $HOME/.rhosts ]]
	1207	then
	1208	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1209	printf "\n\n *** file:"
	1210	printf "\n $HOME/.rhosts"
	1211	printf "\n was created\n"
	1212	fi
	1213	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1214	then
	1215	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1216	printf "\n\n *** file:"
	1217	printf "\n $HOME/.rhosts"
	1218	printf "\n was extended by the name of the current host\n"
	1219	fi
	1220	fi
	1221
	1222
	1223
	1224	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1225	if [[ $queue = none ]]
	1226	then
	1227	case $host in
	1228	(ibmb) if [[ $node_usage = shared ]]
	1229	then
	1230	queue=cshare
	1231	else
	1232	queue=csolo
	1233	fi;;
[312]	1234	(ibmh) queue=no_class;;
[1]	1235	(ibmy) queue=parallel;;
[440]	1236	(lckyoto) queue=ph;;
[191]	1237	(lcsgib) queue=bigq;;
	1238	(lcsgih) queue=bigq;;
[265]	1239	(lctit) queue=RAM64GB;;
[1]	1240	(nech) queue=none;;
[253]	1241	(necriam) queue=SP;;
[1]	1242	(unics) queue=unics;;
	1243	esac
	1244	fi
	1245
	1246
	1247	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1248	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1249	# ERMITTELN
	1250	(( i = 0 ))
	1251	while (( i < iin ))
	1252	do
	1253	(( i = i + 1 ))
	1254	(( maxcycle = 0 ))
	1255
	1256	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1257	if [[ "${actionin[$i]}" = di ]]
	1258	then
	1259	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1260	# REM-MASCHINE AUSWERTEN
	1261	eval filename=${pathin[$i]}/${endin[$i]}
	1262	else
	1263	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1264	# REM-MASCHINE AUSWERTEN
	1265	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1266	fi
	1267
	1268	# PRUEFEN AUF VORHANDENSEIN
	1269	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1270	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1271	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1272	then
	1273	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1274	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1275	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1276	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1277	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1278	if [[ "${transin[$i]}" != "locopt" ]]
	1279	then
	1280	printf "\n\n +++ INPUT-file: "
	1281	if [[ "${extin[$i]}" = "" ]]
	1282	then
	1283	printf "\n $filename"
	1284	else
	1285	printf "\n $filename.${extin[$i]}"
	1286	fi
	1287	printf "\n does not exist\n"
	1288	locat=input; exit
	1289	else
	1290	transin[$i]="unavailable"
	1291	fi
	1292	else
	1293
	1294	# ZYKLUSNUMMER FESTSTELLEN
	1295	ls -1 -d $filename > filelist 2>/dev/null
	1296	ls -1 -d $filename.* >> filelist 2>/dev/null
	1297	while read zeile
	1298	do
	1299	cycle=$(print $zeile \| cut -f2 -d".")
	1300	if [[ "$cycle" = "$zeile" ]]
	1301	then
	1302	(( icycle = 0 ))
	1303	elif [[ "$cycle" = "${extin[$i]}" ]]
	1304	then
	1305	(( icycle = 0 ))
	1306	else
	1307	(( icycle = $cycle ))
	1308	fi
	1309	if (( icycle > maxcycle ))
	1310	then
	1311	(( maxcycle = icycle ))
	1312	file_to_be_used=$zeile
	1313	fi
	1314	done <filelist
	1315	rm filelist
	1316
	1317	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1318	if (( maxcycle > 0 ))
	1319	then
	1320	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1321	then
	1322	filename=${filename}.$maxcycle.${extin[$i]}
	1323	else
	1324	filename=${filename}.$maxcycle
	1325	fi
	1326	else
	1327	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1328	then
	1329	filename=${filename}.${extin[$i]}
	1330	fi
	1331	fi
	1332
	1333	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1334	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1335	absnamein[$i]=$filename
	1336	if (( maxcycle > 0 ))
	1337	then
	1338	if [[ "${actionin[$i]}" = di ]]
	1339	then
	1340	frelin[$i]=${endin[$i]}.$maxcycle
	1341	else
	1342	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1343	fi
	1344	else
	1345	if [[ "${actionin[$i]}" = di ]]
	1346	then
	1347	frelin[$i]=${endin[$i]}
	1348	else
	1349	frelin[$i]=${afname}${endin[$i]}
	1350	fi
	1351	fi
	1352
	1353	fi
	1354	done
	1355
	1356
	1357	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1358	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1359	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1360	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1361	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1362	(( i = 0 ))
	1363	while (( i < iout ))
	1364	do
	1365	(( i = i + 1 ))
	1366	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1367	then
[260]	1368	if [[ "${actionout[$i]}" = tr ]]
[1]	1369	then
	1370	actionout[$i]=""
[260]	1371	elif [[ "${actionout[$i]}" = trpe ]]
	1372	then
	1373	actionout[$i]=pe
[1]	1374	elif [[ "${actionout[$i]}" = tra ]]
	1375	then
	1376	actionout[$i]=a
	1377	fi
	1378	(( maxcycle = 0 ))
	1379	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1380	eval catalogname=${pathout[$i]}
	1381	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1382	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1383	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1384	then
	1385
	1386	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1387	if cat /dev/null > $filename
	1388	then
	1389	rm $filename
	1390	else
	1391
	1392	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1393	if [[ ! -d $catalogname ]]
	1394	then
	1395	if mkdir -p $catalogname
	1396	then
	1397	printf "\n\n *** directory:"
	1398	printf "\n $catalogname"
	1399	printf "\n was created\n"
	1400	else
	1401	printf "\n\n +++ OUTPUT-file:"
	1402	printf "\n $filename"
	1403	printf "\n cannot be created, because directory does not exist"
	1404	printf "\n and cannot be created either"
	1405	printf "\n"
	1406	locat=output ; exit
	1407	fi 2>/dev/null
	1408	else
	1409	printf "\n\n +++ OUTPUT-file:"
	1410	printf "\n $filename"
	1411	printf "\n cannot be created, although directory exists"
	1412	printf "\n"
	1413	locat=output ; exit
	1414	fi
	1415	fi 2>/dev/null
	1416	else
	1417
	1418	# ZYKLUSNUMMER FESTSTELLEN
	1419	ls -1 -d $filename > filelist 2>/dev/null
	1420	ls -1 -d $filename.* >> filelist 2>/dev/null
	1421	while read zeile
	1422	do
	1423	cycle=$(print $zeile \| cut -f2 -d".")
	1424	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1425	then
	1426	(( icycle = 1 ))
	1427	else
	1428	(( icycle = $cycle + 1 ))
	1429	fi
	1430	if (( icycle > maxcycle ))
	1431	then
	1432	(( maxcycle = icycle ))
	1433	fi
	1434	done <filelist
	1435	rm filelist
	1436	fi
	1437
	1438	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1439	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1440	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1441	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1442	if [[ "${actionout[$i]}" != a ]]
	1443	then
	1444	if (( maxcycle > 0 ))
	1445	then
	1446	filename=${filename}.$maxcycle
	1447	if cat /dev/null > $filename
	1448	then
	1449	rm $filename
	1450	else
	1451	printf "\n +++ OUTPUT-file:"
	1452	printf "\n $filename"
	1453	printf "\n cannot be created"
	1454	locat=output ; exit
	1455	fi
	1456	fi
	1457	else
	1458	(( maxcycle = maxcycle - 1 ))
	1459	if (( maxcycle > 0 ))
	1460	then
	1461	filename=${filename}.$maxcycle
	1462	fi
	1463	fi
	1464
	1465	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1466	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1467	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1468	pathout[$i]=$filename
	1469	if (( maxcycle > 0 ))
	1470	then
	1471	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1472	else
	1473	frelout[$i]=${fname}${endout[$i]}
	1474	fi
	1475
	1476	fi
	1477	done
	1478
	1479
[260]	1480	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1481	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1482	then
[260]	1483	if [[ "$dvr_inc" = "" ]]
[83]	1484	then
[260]	1485	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1486	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1487	locat=dvr; exit
[83]	1488	fi
[260]	1489	if [[ "$dvr_lib" = "" ]]
[83]	1490	then
[260]	1491	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1492	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1493	locat=dvr; exit
[83]	1494	fi
	1495	fi
	1496
	1497
[1]	1498	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1499	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1500	# UEBERSETZT ZU WERDEN)
	1501	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1502	then
	1503	printf "\n +++ neither main program nor executable defined"
	1504	locat=source; exit
	1505	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1506	then
	1507	printf "\n +++ main program as well as executable defined"
	1508	locat=source; exit
	1509	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1510	then
	1511	do_compile=false
	1512	fi
	1513
	1514
[191]	1515	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1516	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1517	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1518	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1519	then
	1520	rm -rf SOURCES_FOR_RUN_$fname
	1521	mkdir SOURCES_FOR_RUN_$fname
	1522	fi
	1523
	1524
[1]	1525	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1526	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1527	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1528	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1529	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1530	then
	1531
[5]	1532	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1533	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1534
	1535
	1536	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1537	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1538	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1539	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1540	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1541	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1542	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1543	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1544	# GESAMMELT
[5]	1545	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1546	then
	1547
	1548	source_list=""
	1549	cd $source_path
	1550
	1551
	1552	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1553	Names=$(ls -1 *.f90 2>&1)
	1554	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1555	Names=$(ls -1 *.F90 2>&1)
	1556	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1557	Names=$(ls -1 *.F 2>&1)
	1558	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1559	Names=$(ls -1 *.f 2>&1)
	1560	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1561	Names=$(ls -1 *.c 2>&1)
	1562	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1563
	1564
	1565	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1566	for dateiname in $Filenames
	1567	do
	1568	if [[ -w $dateiname ]]
	1569	then
	1570	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1571	then
	1572	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1573	source_list=$source_list"$dateiname "
	1574	fi
	1575	fi
	1576	done
	1577
	1578	cd - > /dev/null
	1579
	1580
[5]	1581	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1582	then
	1583
	1584	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1585	source_list=""
	1586	cd $source_path
	1587
	1588
	1589	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1590	if [[ ! -d .svn ]]
	1591	then
	1592	printf "\n\n +++ source directory"
	1593	printf "\n \"$source_path\" "
	1594	printf "\n is not under control of \"subversion\"."
[306]	1595	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1596	fi
	1597
	1598
	1599	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1600	Filenames=""
[69]	1601	svn status > tmp_mrun
	1602	while read line
[5]	1603	do
	1604	firstc=`echo $line \| cut -c1`
	1605	if [[ $firstc = M \|\| $firstc = "?" ]]
	1606	then
	1607	Name=`echo "$line" \| cut -c8-`
	1608	extension=`echo $Name \| cut -d. -f2`
	1609	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1610	then
	1611	Filenames="$Filenames "$Name
	1612	fi
	1613	fi
[69]	1614	done < tmp_mrun
[5]	1615
	1616
	1617	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1618	for dateiname in $Filenames
	1619	do
	1620	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1621	source_list=$source_list"$dateiname "
	1622	done
	1623
	1624	cd - > /dev/null
	1625
	1626
[1]	1627	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1628	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1629	# VORHANDEN
[5]	1630	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1631	then
	1632
	1633	cd $source_path
	1634
	1635	for filename in $source_list
	1636	do
	1637
	1638	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1639	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1640	then
	1641	printf "\n +++ source code file: $filename"
	1642	printf "\n must not contain (\"/\") "
	1643	locat=source; exit
	1644	fi
	1645
	1646	if [[ ! -f $filename ]]
	1647	then
	1648	printf "\n +++ source code file: $filename"
	1649	printf "\n does not exist"
	1650	locat=source; exit
	1651	else
	1652	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1653	fi
	1654
	1655	done
	1656
	1657	cd - > /dev/null
	1658
	1659	fi
	1660
	1661
	1662	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1663	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1664	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1665	if [[ $restart_run != true ]]
[1]	1666	then
	1667
	1668	if [[ ! -f "$source_path/$mainprog" ]]
	1669	then
	1670	printf "\n\n +++ main program: $mainprog"
	1671	printf "\n does not exist in source directory"
	1672	printf "\n \"$source_path\"\n"
	1673	locat=source; exit
	1674	else
	1675	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1676	then
	1677	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1678	source_list=${mainprog}" $source_list"
	1679	fi
	1680	fi
	1681	fi
	1682
	1683
[211]	1684	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1685	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1686	if [[ "$restart_run" != true ]]
	1687	then
	1688	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1689	if [[ ! -f $makefile ]]
	1690	then
	1691	printf "\n +++ file \"$makefile\" does not exist"
	1692	locat=make; exit
	1693	else
	1694	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1695	fi
	1696	fi
	1697
	1698
[1]	1699	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1700	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1701	then
	1702
	1703	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1704	if [[ ! -d $add_source_path ]]
	1705	then
	1706	printf "\n\n +++ WARNING: additional source code directory"
	1707	printf "\n \"$add_source_path\" "
	1708	printf "\n does not exist or is not a directory."
	1709	printf "\n No source code will be used from this directory!\n"
	1710	add_source_path=""
	1711	sleep 3
	1712	else
	1713
	1714	cd $add_source_path
[211]	1715	found=false
[1]	1716
	1717	Names=$(ls -1 *.f90 2>&1)
	1718	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1719	Names=$(ls -1 *.F90 2>&1)
	1720	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1721	Names=$(ls -1 *.F 2>&1)
	1722	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1723	Names=$(ls -1 *.f 2>&1)
	1724	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1725	Names=$(ls -1 *.c 2>&1)
	1726	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1727
	1728	cd - > /dev/null
	1729	cd SOURCES_FOR_RUN_$fname
	1730
[211]	1731	# COPY MAKEFILE IF EXISTING
	1732	if [[ -f $add_source_path/Makefile ]]
	1733	then
	1734	printf "\n\n *** user Makefile from directory"
	1735	printf "\n \"$add_source_path\" is used \n"
	1736	sleep 1
	1737	cp $add_source_path/Makefile .
	1738	fi
	1739
[1]	1740	for dateiname in $AddFilenames
	1741	do
	1742	if [[ -f $dateiname ]]
	1743	then
	1744	printf "\n +++ source code file \"$dateiname\" found in additional"
	1745	printf "\n source code directory \"$add_source_path\" "
[211]	1746	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1747	printf "\n from directory \"$source_path\"."
[1]	1748	locat=source; exit
	1749	fi
	1750
	1751	cp $add_source_path/$dateiname .
	1752	source_list="$source_list $dateiname"
	1753
[211]	1754	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1755	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1756	then
	1757	printf "\n\n +++ user file \"$dateiname\" "
	1758	printf "\n is not listed in Makefile \n"
	1759	locat=source; exit
	1760	else
	1761
[1]	1762	# Default User-Interface von der Liste entfernen, falls Datei
	1763	# ein User-Interface enthaelt
[211]	1764	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1765	# then
	1766	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1767	# then
	1768	# rm -rf user_interface.f90
	1769	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1770	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1771	# printf "\n since a user-interface is found in file"
	1772	# printf "\n \"$add_source_path/$dateiname\" \n"
	1773	# sleep 3
	1774	# else
	1775	if [[ $found = false ]]
[1]	1776	then
[211]	1777	found=true
	1778	printf "\n\n *** following user file(s) added to the"
	1779	printf " files to be translated:\n "
[1]	1780	fi
[211]	1781	printf "$dateiname "
	1782	sleep 0.5
[1]	1783	fi
	1784	done
[211]	1785	[[ $found = true ]] && printf "\n"
[1]	1786	cd - > /dev/null
	1787	fi
	1788	fi
	1789
	1790
	1791	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1792	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1793	if [[ $restart_run != true && -n $package_list ]]
[1]	1794	then
	1795
	1796	cd $source_path
	1797
	1798	for package in $package_list
	1799	do
	1800
	1801	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1802
	1803	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1804	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1805	# LIEFERT
	1806	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1807
	1808
	1809	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1810	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1811	for source_list_name in $package_source_list
	1812	do
	1813	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1814	then
	1815
	1816	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1817	ending=`echo $source_list_name \| cut -f2 -d.`
	1818	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1819	then
	1820	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1821	source_list="$source_list $source_list_name"
	1822	fi
	1823	fi
	1824	done
	1825	done
	1826
	1827	cd - > /dev/null
	1828	fi
	1829
	1830
	1831	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1832	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1833	# if [[ "$restart_run" != true ]]
	1834	# then
	1835	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1836	# if [[ ! -f $makefile ]]
	1837	# then
	1838	# printf "\n +++ file \"$makefile\" does not exist"
	1839	# locat=make; exit
	1840	# else
	1841	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1842	# fi
	1843	# fi
[1]	1844
	1845	fi # do_compile=true
	1846
	1847
	1848	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1849	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1850	if [[ $do_compile = true ]]
	1851	then
	1852
	1853	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1854	# ZUSAMMENSETZEN
[83]	1855	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1856	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1857	then
[82]	1858	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1859	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1860	then
[82]	1861	cpp_options="$cpp_options -D__nec"
	1862	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1863	then
	1864	cpp_options="$cpp_options -D__lc"
[1]	1865	else
[82]	1866	cpp_options="$cpp_options -D__$localhost"
[1]	1867	fi
[83]	1868
	1869	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1870	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1871	then
[82]	1872	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1873	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1874	else
[82]	1875	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1876	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1877	fi
[83]	1878
	1879	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1880	if [[ -n $package_list ]]
	1881	then
	1882	for package in $package_list
	1883	do
	1884	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1885	then
	1886	if [[ $package != "dvrp_graphics+1PE" ]]
	1887	then
[82]	1888	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1889	else
[82]	1890	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1891	export use_seperate_pe_for_dvrp_output=true
	1892	fi
	1893	else
	1894	if [[ $package != "dvrp_graphics+1PE" ]]
	1895	then
[82]	1896	cpp_options="$cpp_options -D__$package"
[1]	1897	else
[82]	1898	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1899	export use_seperate_pe_for_dvrp_output=true
	1900	fi
	1901	fi
	1902	done
	1903	fi
[83]	1904
	1905	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1906	if [[ -n $cpp_opts ]]
	1907	then
	1908	for popts in $cpp_opts
	1909	do
[82]	1910	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1911	then
	1912	cpp_options="${cpp_options},-D__$popts=__$popts"
	1913	else
	1914	cpp_options="$cpp_options -D__$popts"
	1915	fi
[1]	1916	done
	1917	fi
	1918
	1919	else
	1920
	1921
	1922	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1923	if [[ $do_remote = false ]]
	1924	then
	1925	if [[ ! -f $executable ]]
	1926	then
	1927	printf "\n +++ executable file: $executable"
	1928	printf "\n does not exist"
	1929	locat=executable; exit
	1930	fi
	1931	fi
	1932	fi
	1933
	1934
	1935	# JOBMODUS FESTSTELLEN
	1936	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1937	then
	1938	jobmo=BATCH
	1939	else
	1940	jobmo=INTERACTIVE
	1941	fi
	1942
	1943
	1944	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1945	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1946	if [[ "$compiler_name" = "" ]]
	1947	then
[82]	1948
[220]	1949	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1950	locat=compiler_name; exit
	1951
[1]	1952	fi
	1953
	1954
[251]	1955	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1956	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1957
	1958
	1959
	1960	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1961	kennung=$RANDOM
	1962	if [[ "$tmp_user_catalog" = "" ]]
	1963	then
[312]	1964	if [[ $localhost = ibmh ]]
[1]	1965	then
[312]	1966	tmp_user_catalog=$SCRATCH
[1]	1967	elif [[ $localhost = nech ]]
	1968	then
	1969	tmp_user_catalog=$WRKSHR
	1970	else
	1971	tmp_user_catalog=/tmp
	1972	fi
	1973	fi
	1974	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1975
	1976
	1977	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1978	# BESTIMMEN
	1979	if [[ "$tmp_data_catalog" = "" ]]
	1980	then
[312]	1981	if [[ $localhost = ibmb ]]
[1]	1982	then
	1983	tmp_data_catalog=$WORK/mrun_restart_data
	1984	elif [[ $localhost = nech ]]
	1985	then
	1986	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1987	else
	1988	tmp_data_catalog=/tmp/mrun_restart_data
	1989	fi
	1990	fi
	1991
	1992
	1993	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1994	# ERSETZEN
	1995	if [[ $do_remote = false && $do_compile = true ]]
	1996	then
	1997	eval fopts=\"$fopts\"
	1998	eval lopts=\"$lopts\"
	1999	fi
	2000
	2001
	2002
	2003	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	2004	fopts="$fopts $netcdf_inc $dvr_inc"
	2005	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2006	ROPTS="$ropts"
[440]	2007	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
[1]	2008	then
	2009	XOPT="-X $numprocs"
	2010	fi
	2011
	2012
	2013
	2014	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2015	# GRAMM BENOETIGT
	2016	done=false
	2017	while [[ $done = false ]]
	2018	do
	2019	cputime=$cpumax
	2020	if (( $cputime == 0 ))
	2021	then
[246]	2022	if [[ $do_batch = true ]]
	2023	then
	2024	printf "\n +++ cpu-time is undefined"
	2025	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2026	printf "\n >>> "
	2027	read cputime 1>/dev/null 2>&1
	2028	else
	2029	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2030	fi
[1]	2031	else
	2032	done=true
	2033	fi
	2034	cpumax=$cputime
	2035	done
	2036
	2037	(( minuten = cputime / 60 ))
	2038	(( sekunden = cputime - minuten * 60 ))
	2039
	2040
	2041	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2042	if [[ $do_batch = true ]]
	2043	then
	2044	done=false
	2045	while [[ $done = false ]]
	2046	do
	2047	if (( memory == 0 ))
	2048	then
	2049	printf "\n +++ memory demand is undefined"
	2050	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2051	printf "\n >>> "
	2052	read memory 1>/dev/null 2>&1
	2053	else
	2054	done=true
	2055	fi
	2056	done
	2057	fi
	2058
	2059
	2060	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2061	if [[ $do_remote = true && -z $remote_username ]]
	2062	then
	2063	while [[ -z $remote_username ]]
	2064	do
	2065	printf "\n +++ username on remote host \"$host\" is undefined"
	2066	printf "\n >>> Please type username:"
	2067	printf "\n >>> "
	2068	read remote_username
	2069	done
	2070	mc="$mc -u$remote_username"
	2071	fi
	2072
[221]	2073
	2074	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2075	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2076	then
	2077	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2078	fi
	2079
	2080
	2081
[1]	2082	###########################################################################
	2083	# HEADER-AUSGABE
	2084	###########################################################################
	2085
	2086
	2087	calltime=$(date)
	2088	printf "\n"
	2089	# [[ $silent = false ]] && clear
	2090	printf "#--------------------------------------------------------------# \n"
	2091	printf "\| $version$calltime \| \n"
	2092	printf "\| \| \n"
	2093	spalte1="called on:"; spalte2=$localhost_realname
	2094	printf "\| $spalte1$spalte2 \| \n"
	2095	if [[ $local_compile = false ]]
	2096	then
	2097	if [[ $do_remote = true ]]
	2098	then
	2099	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2100	else
	2101	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2102	fi
	2103	else
	2104	spalte1="compiling test only!"; spalte2=""
	2105	fi
	2106	printf "\| $spalte1$spalte2 \| \n"
	2107	if [[ -n $numprocs ]]
	2108	then
	2109	spalte1="number of PEs:"; spalte2=$numprocs
	2110	printf "\| $spalte1$spalte2 \| \n"
	2111	fi
	2112	if [[ -n $tasks_per_node ]]
	2113	then
	2114	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2115	printf "\| $spalte1$spalte2 \| \n"
	2116	fi
	2117	if [[ $threads_per_task != 1 ]]
	2118	then
	2119	spalte1="threads per task:"; spalte2="$threads_per_task"
	2120	printf "\| $spalte1$spalte2 \| \n"
	2121	fi
	2122	printf "\| \| \n"
	2123	if [[ $do_compile = true ]]
	2124	then
[475]	2125	if [[ "$mopts" != "" ]]
	2126	then
	2127	spalte1=make-options:; spalte2=$mopts
	2128	printf "\| $spalte1$spalte2 \| \n"
	2129	zeile=$(echo "$mopts" \| cut -c41-)
	2130	while [[ "$zeile" != "" ]]
	2131	do
	2132	spalte1=""
	2133	spalte2=$zeile
	2134	printf "\| $spalte1$spalte2 \| \n"
	2135	zeile=$(echo "$zeile" \| cut -c41-)
	2136	done
	2137	fi
	2138
[82]	2139	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2140	printf "\| $spalte1$spalte2 \| \n"
[82]	2141	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2142	while [[ "$zeile" != "" ]]
	2143	do
	2144	spalte1=""
	2145	spalte2=$zeile
	2146	printf "\| $spalte1$spalte2 \| \n"
	2147	zeile=$(echo "$zeile" \| cut -c41-)
	2148	done
	2149
[82]	2150	spalte1=compiler-options:; spalte2="$fopts"
[1]	2151	printf "\| $spalte1$spalte2 \| \n"
[82]	2152	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2153	while [[ "$zeile" != "" ]]
	2154	do
	2155	spalte1=""
	2156	spalte2=$zeile
	2157	printf "\| $spalte1$spalte2 \| \n"
	2158	zeile=$(echo "$zeile" \| cut -c41-)
	2159	done
	2160
[82]	2161	spalte1=linker-options:; spalte2=$lopts
[1]	2162	printf "\| $spalte1$spalte2 \| \n"
[82]	2163	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2164	while [[ "$zeile" != "" ]]
	2165	do
	2166	spalte1=""
	2167	spalte2=$zeile
	2168	printf "\| $spalte1$spalte2 \| \n"
	2169	zeile=$(echo "$zeile" \| cut -c41-)
	2170	done
	2171
	2172	spalte1="main program":; spalte2=$mainprog
	2173	printf "\| $spalte1$spalte2 \| \n"
	2174	else
	2175	spalte1=executable:; spalte2=$executable
	2176	printf "\| $spalte1$spalte2 \| \n"
	2177	fi
	2178	printf "\| \| \n"
	2179	spalte1="base name of files":; spalte2=$fname
	2180	printf "\| $spalte1$spalte2 \| \n"
	2181	if [[ $fname != $afname ]]
	2182	then
	2183	spalte1="base name of input files":; spalte2=$afname
	2184	printf "\| $spalte1$spalte2 \| \n"
	2185	fi
	2186	spalte1="INPUT control list":; spalte2=$input_list
	2187	printf "\| $spalte1$spalte2 \| \n"
	2188	spalte1="OUTPUT control list":; spalte2=$output_list
	2189	printf "\| $spalte1$spalte2 \| \n"
	2190
	2191	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2192	then
	2193	spalte1="memory demand / PE":; spalte2="$memory MB"
	2194	printf "\| $spalte1$spalte2 \| \n"
	2195	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2196	printf "\| $spalte1$spalte2 \| \n"
	2197	fi
	2198
	2199	if [[ $do_compile = true ]]
	2200	then
	2201	printf "\| \| \n"
	2202	printf "\| Files to be compiled: \| \n"
	2203	zeile=$source_list
	2204	while [[ "$zeile" != "" ]]
	2205	do
	2206	spalte3=$zeile
	2207	printf "\| $spalte3 \| \n"
	2208	zeile=$(echo "$zeile" \| cut -c61-)
	2209	done
	2210	fi
	2211	printf "#--------------------------------------------------------------#"
	2212
	2213
	2214
	2215	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2216	if [[ $do_trace = true ]]
	2217	then
	2218	(( i = 0 ))
	2219	while (( i < iin ))
	2220	do
	2221	(( i = i + 1 ))
	2222	if (( i == 1 ))
	2223	then
	2224	printf "\n\n >>> INPUT-file assignments:\n"
	2225	fi
	2226	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2227	done
	2228	(( i = 0 ))
	2229	while (( i < iout ))
	2230	do
	2231	(( i = i + 1 ))
	2232	if (( i == 1 ))
	2233	then
	2234	printf "\n\n >>> OUTPUT-file assignments:\n"
	2235	fi
	2236	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2237	done
	2238	(( i = 0 ))
	2239	while (( i < iic ))
	2240	do
	2241	(( i = i + 1 ))
	2242	if (( i == 1 ))
	2243	then
	2244	printf "\n\n >>> INPUT-commands:\n"
	2245	fi
	2246	printf "\n ${in_command[$i]}"
	2247	done
	2248	(( i = 0 ))
	2249	while (( i < ioc ))
	2250	do
	2251	(( i = i + 1 ))
	2252	if (( i == 1 ))
	2253	then
	2254	printf "\n\n >>> OUTPUT-commands:\n"
	2255	fi
	2256	printf "\n ${out_command[$i]}"
	2257	done
	2258	fi
	2259
	2260
	2261	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2262	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2263	then
	2264	antwort=dummy
	2265	printf "\n\n"
	2266	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2267	do
	2268	printf " >>> everything o.k. (y/n) ? "
	2269	read antwort
	2270	done
	2271	if [[ $antwort = n \|\| $antwort = N ]]
	2272	then
	2273	locat=user_abort; (( iec = 0 )); exit
	2274	fi
	2275	if [[ $do_batch = true ]]
	2276	then
	2277	printf " >>> batch-job will be created and submitted"
	2278	else
	2279	if [[ $local_compile = false ]]
	2280	then
	2281	printf " >>> MRUN will now continue to execute on this machine"
	2282	else
	2283	printf " >>> a test compilation will now be carried out on this machine"
	2284	fi
	2285	fi
	2286	fi
	2287
	2288
	2289
	2290
	2291	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2292	# CHENDE AKTIONEN DURCHGEFUEHRT
	2293	if [[ $do_batch = false ]]
	2294	then
	2295
	2296
	2297	# TEMPORAEREN KATALOG ERZEUGEN
	2298	mkdir -p $TEMPDIR
	2299	chmod go+rx $TEMPDIR
	2300	tmpcreate=true
	2301
	2302
	2303	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2304	# TEMPORAERES VERZEICHNIS KOPIEREN
	2305	if [[ $do_compile = true ]]
	2306	then
	2307
	2308	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2309	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2310	if [[ $localhost = nech ]]
	2311	then
	2312	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2313	if mkdir -p $TEMPDIR_COMPILE
	2314	then
	2315	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2316	printf "\n is generated as temporary directory for cross compiling\n"
	2317	else
	2318	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2319	printf "\n needed for cross compilation failed"
	2320	locat=compile
	2321	exit
	2322	fi
	2323	else
	2324	TEMPDIR_COMPILE=$TEMPDIR
	2325	fi
	2326
	2327
[82]	2328	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2329	line=""
	2330	grep "%depository_path" $config_file > tmp_mrun
	2331	while read line
	2332	do
	2333	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2334	then
	2335	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2336	then
[82]	2337	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2338	fi
[82]	2339	fi
	2340	done < tmp_mrun
[1]	2341
[82]	2342	line=""
	2343	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2344	while read line
	2345	do
	2346	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2347	then
[211]	2348	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2349	then
	2350	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2351	fi
[1]	2352	fi
[82]	2353	done < tmp_mrun
[1]	2354
[82]	2355	if [[ "$local_depository_path" = "" ]]
	2356	then
	2357	if [[ "$global_depository_path" != "" ]]
[1]	2358	then
[82]	2359	local_depository_path=$global_depository_path
[1]	2360	else
[82]	2361	printf "\n\n +++ no depository path found in configuration file"
	2362	printf "\n for local host \"$localhost\" "
	2363	printf "\n please set \"\%depository_path\" in configuration file\n"
	2364	locat=config_file; exit
[1]	2365	fi
[82]	2366	fi
	2367	eval local_depository_path=$local_depository_path
[215]	2368	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2369	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2370
[215]	2371
[82]	2372	basename=`print $mainprog \| cut -f1 -d"."`
	2373	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2374	if [[ ! -f $make_depository ]]
	2375	then
	2376	printf "\n"
	2377	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2378	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2379	else
	2380	cp $make_depository $TEMPDIR_COMPILE
[1]	2381	cd $TEMPDIR_COMPILE
[82]	2382	tar -xf $make_depository > /dev/null 2>&1
[1]	2383	cd - > /dev/null
	2384	fi
[82]	2385
	2386	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2387
[1]	2388	else
[475]	2389
[1]	2390	cp $executable ${TEMPDIR}/a.out
[475]	2391
[1]	2392	fi
	2393
	2394
	2395	# WECHSEL IN TEMPORAEREN KATALOG
[475]	2396	cd $TEMPDIR
[1]	2397	printf "\n *** changed to temporary directory: $TEMPDIR"
	2398
	2399
	2400	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2401	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2402	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2403	# ERMITTELN
	2404	(( i = 0 ))
	2405	while (( i < iout ))
	2406	do
	2407	(( i = i + 1 ))
	2408	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2409	then
	2410	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2411	else
	2412	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2413	fi
	2414	done
	2415
	2416
	2417	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2418	if [[ $do_compile = true ]]
	2419	then
	2420
	2421
	2422	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2423	printf "\n\n\n *** compilation starts \n$striche\n"
	2424	printf " *** compilation with make using following options:\n"
[211]	2425	printf " make depository: $make_depository"
[475]	2426	if [[ "$mopts" != "" ]]
	2427	then
	2428	printf " make options: $mopts\n"
	2429	fi
[82]	2430	printf " compilername: $compiler_name\n"
[475]	2431	printf " compiler options: $fopts\n"
[82]	2432	printf " preprocessor-directives: $cpp_options \n"
	2433	printf " linker-options: $lopts \n"
	2434	printf " source code files: $source_list \n"
	2435
	2436	if [[ $localhost = nech ]]
[1]	2437	then
[475]	2438	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[82]	2439	cp $TEMPDIR_COMPILE/a.out .
	2440	[[ $? != 0 ]] && compile_error=true
	2441	rm -rf $TEMPDIR_COMPILE
[312]	2442	elif [[ $localhost = ibmh ]]
	2443	then
[325]	2444	printf " compiler is called via ssh on \"plogin1\" \n"
[475]	2445	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2446	[[ ! -f a.out ]] && compile_error=true
	2447	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2448	elif [[ $localhost = lcsgib ]]
	2449	then
[221]	2450	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[475]	2451	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2452	[[ ! -f a.out ]] && compile_error=true
	2453	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2454	elif [[ $localhost = lcsgih ]]
	2455	then
[221]	2456	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[475]	2457	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2458	[[ ! -f a.out ]] && compile_error=true
	2459	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2460	else
[118]	2461	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[475]	2462	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
[82]	2463	fi
[1]	2464
	2465	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2466	then
	2467	printf "\n +++ error occured while compiling or linking"
	2468	locat=compile
[181]	2469
[182]	2470	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2471	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2472	# then
[181]	2473	exit
[197]	2474	# else
	2475	# locat=normal
	2476	# fi
[1]	2477	else
	2478	printf "$striche\n *** compilation finished \n"
	2479	fi
	2480	fi
	2481
	2482
	2483	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2484	if [[ $local_compile = true ]]
	2485	then
	2486	cd $HOME
	2487	rm -rf $TEMPDIR
	2488	locat=local_compile; exit
	2489	fi
	2490
	2491
	2492	# BEREITSTELLEN DER INPUT-DATEIEN
	2493	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2494	(( i = 0 ))
	2495	while (( i < iin ))
	2496	do
	2497	(( i = i + 1 ))
	2498	if (( i == 1 ))
	2499	then
	2500	printf "\n\n *** providing INPUT-files:\n$striche"
	2501	fi
	2502
	2503
	2504	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2505	if [[ "${transin[$i]}" = unavailable ]]
	2506	then
	2507	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2508	then
	2509	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2510	printf "\n is not available!"
	2511	else
	2512	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2513	printf "\n is not available!"
	2514	fi
	2515	continue
	2516	fi
	2517
	2518	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2519	files_for_pes=false; datentyp=file
	2520	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2521	then
	2522	files_for_pes=true; datentyp=directory
	2523	actionin[$i]=""
	2524	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2525	then
	2526	actionin[$i]=""
	2527	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2528	then
	2529	files_for_pes=true; datentyp=directory
	2530	actionin[$i]="ar"
	2531	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2532	then
	2533	actionin[$i]="ar"
	2534	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2535	then
	2536	files_for_pes=true; datentyp=directory
	2537	actionin[$i]="fl"
	2538	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2539	then
	2540	actionin[$i]="fl"
	2541	fi
	2542
	2543	if [[ $files_for_pes = true ]]
	2544	then
	2545	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2546	else
	2547	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2548	fi
	2549
	2550	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2551	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2552	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2553	# SERVER ZU HOLEN
	2554	if [[ "${actionin[$i]}" = fl ]]
	2555	then
	2556	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2557	if [[ $files_for_pes = false ]]
	2558	then
	2559	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2560	then
	2561	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2562	got_tmp[$i]=true
	2563	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2564	then
	2565	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2566	printf "\n *** trying to use backup copy in \"$WORK\" "
	2567	cp $WORK/${frelin[$i]} ${localin[$i]}
	2568	else
	2569	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2570	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2571	printf "\n *** trying to get copy from archive"
	2572	actionin[$i]=ar
	2573	fi
	2574	else
	2575	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2576	then
	2577	mkdir ${localin[$i]}
[149]	2578	cd $tmp_data_catalog/${frelin[$i]}
	2579	for file in $(ls *)
	2580	do
	2581	ln $file $TEMPDIR/${localin[$i]}
	2582	done
	2583	cd $TEMPDIR
[1]	2584	got_tmp[$i]=true
	2585	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2586	then
	2587	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2588	printf "\n *** trying to use backup copy in \"$WORK\" "
	2589	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2590	else
	2591	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2592	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2593	printf "\n *** trying to get copy from archive"
	2594	actionin[$i]=ar
	2595	fi
	2596	fi
	2597	fi
	2598
	2599
	2600	# DATEI LIEGT AUF ARCHIV-SERVER
	2601	if [[ "${actionin[$i]}" = ar ]]
	2602	then
	2603
	2604	if [[ $files_for_pes = false ]]
	2605	then
	2606	printf "\n file will be restored from archive-system ($archive_system)!"
	2607	else
	2608	printf "\n directory will be restored from archive-system ($archive_system)!"
	2609	fi
	2610
	2611	file_restored=false
	2612
	2613	if [[ $archive_system = asterix ]]
	2614	then
	2615	do_stagein=true
	2616	(( stagein_anz = 0 ))
	2617	while [[ $do_stagein = true ]]
	2618	do
	2619	if [[ $files_for_pes = false ]]
	2620	then
	2621	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2622	else
	2623	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2624	fi
	2625	cat STAGEIN_OUTPUT
	2626	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2627	then
	2628	file_restored=true
	2629	do_stagein=false
	2630	else
	2631	(( stagein_anz = stagein_anz + 1 ))
	2632	if (( stagein_anz == 10 ))
	2633	then
	2634	printf "\n +++ stagein stoped after 10 tries"
	2635	locat=stage
	2636	exit
	2637	fi
	2638	printf "\n +++ restoring from archive failed, trying again:"
	2639	sleep 900
	2640	fi
	2641	done
	2642	elif [[ $archive_system = DMF ]]
	2643	then
	2644	if [[ $files_for_pes = false ]]
	2645	then
	2646	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2647	locat=DMF
	2648	exit
	2649	else
	2650	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2651	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2652	file_restored=true
	2653	fi
	2654	elif [[ $archive_system = tivoli ]]
	2655	then
	2656	if [[ $files_for_pes = false ]]
	2657	then
[399]	2658	if [[ $localhost = lcsgih ]]
[1]	2659	then
[399]	2660	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2661	else
[399]	2662	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2663	fi
	2664	else
	2665	(( inode = 0 ))
	2666	while (( inode < nodes ))
	2667	do
[399]	2668	if [[ $localhost = lcsgih ]]
[1]	2669	then
[399]	2670	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2671	else
[399]	2672	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2673	fi
	2674	(( inode = inode + 1 ))
	2675	done
	2676	fi
	2677	file_restored=true
	2678	elif [[ $archive_system = ut ]]
	2679	then
	2680	if [[ $files_for_pes = false ]]
	2681	then
	2682	cp $UT/${frelin[$i]} .
	2683	else
	2684	(( inode = 0 ))
	2685	while (( inode < nodes ))
	2686	do
	2687	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2688	(( inode = inode + 1 ))
	2689	done
	2690	fi
	2691	file_restored=true
	2692	else
	2693	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2694	locat=rearchive
	2695	exit
	2696	fi
	2697
	2698	if [[ $file_restored = true ]]
	2699	then
	2700
	2701	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2702	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2703	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2704	if [[ $files_for_pes = false ]]
	2705	then
	2706	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2707	else
	2708	mkdir $tmp_data_catalog/${frelin[$i]}
	2709	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2710	fi
	2711	got_tmp[$i]=true
	2712
	2713	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2714	mv ${frelin[$i]} ${localin[$i]}
	2715
	2716	fi
	2717	fi
	2718
	2719
	2720	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2721	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2722	then
	2723
	2724	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2725	then
	2726
	2727	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2728	printf "\n file will be provided for $numprocs processors"
	2729	mkdir ${localin[$i]}
	2730	ival=$numprocs
	2731	(( ii = 0 ))
	2732	while (( ii <= ival-1 ))
	2733	do
	2734	if (( ii < 10 ))
	2735	then
	2736	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2737	elif (( ii < 100 ))
	2738	then
	2739	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2740	elif (( ii < 1000 ))
	2741	then
	2742	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2743	else
	2744	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2745	fi
	2746	(( ii = ii + 1 ))
	2747	done
	2748
	2749	else
	2750
	2751	if [[ $files_for_pes = true ]]
	2752	then
	2753
	2754	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2755	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2756	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2757	# PER MOVE UMBENANNT WERDEN
	2758	printf "\n providing $numprocs files for the respective processors"
	2759	mkdir ${localin[$i]}
[183]	2760	if [[ $link_local_input = true ]]
	2761	then
	2762	printf " using ln -f\n"
	2763	cd ${absnamein[$i]}
	2764	for file in $(ls *)
	2765	do
	2766	ln -f $file ${localin[$i]}
	2767	done
	2768	cd $TEMPDIR
	2769	fi
	2770	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2771	if [[ ! -f "${localin[$i]}/_0000" ]]
	2772	then
	2773	if [[ $link_local_input = true ]]
	2774	then
	2775	printf " ln failed for .../_0000, using cp...\n"
	2776	fi
	2777	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2778	fi
[1]	2779
	2780	else
	2781	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2782	if [[ $link_local_input = true ]]
	2783	then
	2784	printf " using ln -f\n"
	2785	ln -f ${absnamein[$i]} ${localin[$i]}
	2786	fi
	2787	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2788	if [[ ! -f "${localin[$i]}" ]]
	2789	then
	2790	if [[ $link_local_input = true ]]
	2791	then
	2792	printf " ln failed, using cp...\n"
	2793	fi
	2794	cp ${absnamein[$i]} ${localin[$i]}
	2795	fi
[1]	2796	fi
	2797	fi
	2798	fi
	2799
	2800	done
	2801	if (( i != 0 ))
	2802	then
	2803	printf "\n$striche\n *** all INPUT-files provided \n"
	2804	fi
	2805
	2806
	2807	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2808	(( i = 0 ))
	2809	while (( i < iic ))
	2810	do
	2811	(( i = i + 1 ))
	2812	if (( i == 1 ))
	2813	then
	2814	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2815	fi
	2816	printf "\n >>> ${in_command[$i]}"
	2817	eval ${in_command[$i]}
	2818	if (( i == iic ))
	2819	then
	2820	printf "\n$striche\n"
	2821	fi
	2822	done
	2823
	2824
	2825	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2826	cpurest=${cpumax}.
	2827
	2828
[260]	2829	# START DVR STREAMING SERVER
	2830	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2831	then
	2832	if [[ "$dvr_server" != "" ]]
	2833	then
	2834
	2835	printf "\n\n *** preparing the dvr streaming server configuration file"
	2836
	2837	# Check, if a dvr server is already running
	2838	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2839	if [[ "$running_dvrserver_id" != "" ]]
	2840	then
	2841
[261]	2842	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2843	printf "\n This server is used instead starting a new one!"
[261]	2844	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2845
	2846	else
	2847
	2848	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2849	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2850	then
	2851	cp ${PALM_BIN}/.dvrserver.config .
	2852
	2853	# Entering the BASEDIR, UID and GID into this file
	2854	user_id=`id -u`
	2855	group_id=`id -g`
	2856	# & is needed as seperator, because TEMPDIR contains /
	2857	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2858	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2859	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2860	mv .dvrserver.3 .dvrserver.config
	2861	rm .dvrserver.1 .dvrserver.2
	2862
	2863	# Start dvr server in background, get his id and print on terminal
	2864	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2865	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2866	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2867	local_dvrserver_running=.TRUE.
	2868	else
	2869	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2870	printf "\n \"$PALM_BIN\" "
	2871	locat=dvr
	2872	exit
	2873	fi
	2874
	2875	fi
	2876
	2877	else
	2878	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2879	fi
	2880	fi
	2881
	2882
	2883	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2884	# LESEN VON PALM)
	2885	cat > ENVPAR << %%END%%
	2886	&envpar run_identifier = '$fname', host = '$localhost',
	2887	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2888	maximum_cpu_time_allowed = ${cpumax}.,
	2889	revision = '$global_revision',
	2890	local_dvrserver_running = $local_dvrserver_running /
	2891
	2892	%%END%%
	2893
	2894
[1]	2895	# PROGRAMMSTART
	2896	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2897	PATH=$PATH:$TEMPDIR
	2898
[359]	2899	# MPI debug option (argument checking, slows down execution due to increased latency)
	2900	if [[ "$mpi_debug" = true ]]
	2901	then
	2902	export MPI_CHECK_ARGS=1
	2903	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2904	fi
	2905
[1]	2906	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2907	then
	2908	if [[ "$ENVIRONMENT" = BATCH ]]
	2909	then
[211]	2910	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2911	then
	2912	printf "\n +++ debug is allowed in interactive mode only"
	2913	locat=debug
	2914	exit
	2915	fi
[1]	2916	fi
[5]	2917	if [[ $localhost = decalpha ]]
[1]	2918	then
	2919	dxladebug a.out
	2920	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2921	then
	2922
	2923	# SETUP THE IBM MPI ENVIRONMENT
	2924	export MP_SHARED_MEMORY=yes
	2925	export AIXTHREADS_SCOPE=S
	2926	export OMP_NUM_THREADS=$threads_per_task
	2927	export AUTHSTATE=files
	2928	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2929
	2930	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2931	export MP_ADAPTER_USE=shared
	2932	export MP_CPU_USE=multiple
	2933	export MP_TIMEOUT=1200
	2934
	2935	unset MP_TASK_AFFINITY
	2936
	2937	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2938	#(( ii = 1 ))
	2939	#while (( ii <= $numprocs ))
	2940	#do
	2941	# echo $localhost_realname >> hostfile
	2942	# (( ii = ii + 1 ))
	2943	#done
	2944	#export MP_HOSTFILE=hostfile
	2945
	2946	if [[ "$LOADLBATCH" = yes ]]
	2947	then
	2948	totalview poe a.out $ROPTS
	2949	else
	2950	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2951	export TVDSVRLAUNCHCMD=ssh
	2952	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2953	fi
[211]	2954	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2955	then
	2956	# CURRENTLY NO DEBUGGER ON LCSGI
	2957	if [[ $run_coupled_model = true ]]
	2958	then
	2959	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2960	locat=debug
	2961	exit
[223]	2962	else
	2963	echo "no_coupling" > runfile_atmos
[211]	2964	fi
	2965	(( ii = $numprocs / $threads_per_task ))
	2966	export OMP_NUM_THREADS=$threads_per_task
	2967	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2968	if [[ $threads_per_task != 1 ]]
	2969	then
	2970	printf "\n threads per task: $threads_per_task"
	2971	fi
	2972	printf "\n\n"
[223]	2973	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2974	then
	2975	# export MPI_LAUNCH_TIMEOUT=360
	2976	if [[ "$totalview" = true ]]
	2977	then
	2978	printf "\n running totalview debugger"
	2979	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2980	else
	2981	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2982	fi
	2983	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2984	then
	2985	# ulimit -s 300000 # A too large stack size causes problems
	2986	# export MV2_NUM_PORTS=2
	2987	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2988	if [[ "$totalview" = true ]]
	2989	then
	2990	printf "\n running totalview debugger"
	2991	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2992	else
	2993	mpiexec ./a.out $ROPTS < runfile_atmos
	2994	fi
[223]	2995	fi
[1]	2996	else
	2997	printf "\n +++ no debug available on \"$localhost\" "
	2998	printf "\n or not implemented in mrun so far"
	2999	locat=debug
	3000	exit
	3001	fi
	3002	else
	3003	if [[ -n $numprocs ]]
	3004	then
	3005	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	3006	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	3007	then
	3008	# SETUP THE IBM MPI ENVIRONMENT
[312]	3009	if [[ $host != ibmh ]]
	3010	then
	3011	export MP_SHARED_MEMORY=yes
	3012	export AIXTHREAD_SCOPE=S
	3013	export OMP_NUM_THREADS=$threads_per_task
	3014	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3015	export AUTHSTATE=files
	3016	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3017	# export MP_PRINTENV=yes
[1]	3018
[312]	3019	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3020	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3021	export MP_WAIT_MODE=poll
	3022	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3023	fi
[1]	3024	if [[ "$LOADLBATCH" = yes ]]
	3025	then
	3026	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3027	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3028	then
[102]	3029	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3030	else
[343]	3031	if [[ $run_coupled_model = false ]]
	3032	then
	3033	if [[ "$ocean_file_appendix" = true ]]
	3034	then
	3035	echo "precursor_ocean" > runfile_atmos
	3036	else
	3037	echo "precursor_atmos" > runfile_atmos
	3038	fi
	3039	else
	3040	(( iia = $numprocs_atmos / $threads_per_task ))
	3041	(( iio = $numprocs_ocean / $threads_per_task ))
	3042	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3043	printf "\n using $coupled_mode coupling"
	3044	printf "\n\n"
	3045	echo "coupled_run $iia $iio" > runfile_atmos
	3046	fi
	3047	poe ./a.out $ROPTS < runfile_atmos
[1]	3048	fi
	3049	else
	3050	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3051	then
[102]	3052	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3053	elif [[ $localhost = ibmy ]]
	3054	then
	3055	if [[ -f $hostfile ]]
	3056	then
	3057	cp $hostfile hostfile
	3058	else
	3059	(( ii = 1 ))
	3060	while (( ii <= $numprocs ))
	3061	do
	3062	echo $localhost_realname >> hostfile
	3063	(( ii = ii + 1 ))
	3064	done
	3065	fi
	3066	export MP_HOSTFILE=hostfile
[331]	3067	if [[ $run_coupled_model = false ]]
	3068	then
	3069	if [[ "$ocean_file_appendix" = true ]]
	3070	then
	3071	echo "precursor_ocean" > runfile_atmos
	3072	else
	3073	echo "precursor_atmos" > runfile_atmos
	3074	fi
	3075	else
	3076	(( iia = $numprocs_atmos / $threads_per_task ))
	3077	(( iio = $numprocs_ocean / $threads_per_task ))
	3078	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3079	printf "\n using $coupled_mode coupling"
	3080	printf "\n\n"
	3081	echo "coupled_run $iia $iio" > runfile_atmos
	3082	fi
	3083	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3084
[1]	3085	else
	3086	if [[ "$host_file" = "" ]]
	3087	then
	3088	printf "\n +++ no hostfile given in configuration file"
	3089	locat=config_file
	3090	exit
	3091	else
	3092	eval host_file=$host_file
	3093	fi
	3094	export MP_HOSTFILE=$host_file
[102]	3095	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3096	fi
	3097	fi
[251]	3098	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3099	then
	3100	(( ii = nodes ))
	3101	if [[ $ii = 1 ]]
	3102	then
	3103	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3104	export MPIPROGINF=YES
[61]	3105	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3106	echo "*** execution on single node with mpirun"
[102]	3107	mpirun -np $numprocs ./a.out $ROPTS
[1]	3108	else
	3109	(( i = 0 ))
	3110	while (( i < ii ))
	3111	do
	3112	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3113	(( i = i + 1 ))
	3114	done
	3115
	3116	echo "#!/bin/sh" > mpi_exec_shell
	3117	echo " " >> mpi_exec_shell
	3118	echo "set -u" >> mpi_exec_shell
	3119	echo "F_ERRCNT=0" >> mpi_exec_shell
	3120	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3121	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3122	echo "cpurest=$cpurest" >> mpi_exec_shell
	3123	echo "fname=$fname" >> mpi_exec_shell
	3124	echo "localhost=$localhost" >> mpi_exec_shell
	3125	echo "return_addres=$return_addres" >> mpi_exec_shell
	3126	echo "return_username=$return_username" >> mpi_exec_shell
	3127	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3128	echo "write_binary=$write_binary" >> mpi_exec_shell
	3129	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3130	echo " " >> mpi_exec_shell
	3131	echo "export F_ERRCNT" >> mpi_exec_shell
	3132	echo "export MPIPROGINV" >> mpi_exec_shell
	3133	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3134	echo "export cpurest" >> mpi_exec_shell
	3135	echo "export fname" >> mpi_exec_shell
	3136	echo "export localhost" >> mpi_exec_shell
	3137	echo "export return_addres" >> mpi_exec_shell
	3138	echo "export return_username" >> mpi_exec_shell
	3139	echo "export tasks_per_node" >> mpi_exec_shell
	3140	echo "export write_binary" >> mpi_exec_shell
	3141	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3142	echo " " >> mpi_exec_shell
[102]	3143	echo "exec ./a.out" >> mpi_exec_shell
[1]	3144
	3145	chmod u+x mpi_exec_shell
	3146	export MPIPROGINF=YES
	3147	mpirun -f multinode_config &
	3148	wait
	3149
	3150	fi
[440]	3151	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
[1]	3152	then
	3153
	3154	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3155	# DOES NOT EXIST
[179]	3156	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3157	then
[179]	3158	if [[ -f $hostfile ]]
	3159	then
	3160	cp $hostfile hostfile
	3161	else
	3162	(( ii = 1 ))
	3163	while (( ii <= $numprocs / $threads_per_task ))
	3164	do
	3165	echo $localhost_realname >> hostfile
	3166	(( ii = ii + 1 ))
	3167	done
	3168	fi
	3169	eval zeile=\"`head -n $ii hostfile`\"
	3170	printf "\n *** running on: $zeile"
[1]	3171	fi
[179]	3172
[1]	3173	(( ii = $numprocs / $threads_per_task ))
	3174	export OMP_NUM_THREADS=$threads_per_task
[246]	3175	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3176	if [[ $threads_per_task != 1 ]]
	3177	then
[405]	3178	# increase stack size to unlimited, because large runs
	3179	# may abort otherwise
	3180	ulimit -Ss unlimited
	3181	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3182	fi
[102]	3183	if [[ $run_coupled_model = false ]]
[1]	3184	then
[291]	3185	if [[ "$ocean_file_appendix" = true ]]
	3186	then
	3187	echo "precursor_ocean" > runfile_atmos
	3188	else
	3189	echo "precursor_atmos" > runfile_atmos
	3190	fi
[102]	3191	printf "\n\n"
[179]	3192	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3193	then
[221]	3194	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3195	then
[366]	3196	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3197	# export MPI_DSM_DISTRIBUTE=1
	3198	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3199	if [[ $use_openmp = false ]]
	3200	then
[412]	3201	if [[ "$sgi_feature" = ice2 ]]
	3202	then
	3203	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
	3204	else
	3205	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3206	fi
[377]	3207	fi
[366]	3208	# MPI_IB_RAILS: use both IB rails on ICE2
	3209	export MPI_BUFS_PER_HOST=512
	3210	export MPI_IB_RAILS=2
[369]	3211	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3212	export MPI_CONNECTIONS_THRESHOLD=8192
[412]	3213	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
[223]	3214	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3215
	3216	# next is test for openmp usage
	3217	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3218	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3219	then
[374]	3220	export MV2_NUM_PORTS=2
[376]	3221	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3222	# export MV2_ENABLE_AFFINITY=1
[376]	3223	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[412]	3224	# if [[ "$sgi_feature" = ice2 ]]
	3225	# then
	3226	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
	3227	# else
	3228	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
	3229	# fi
	3230	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
[405]	3231	if [[ $threads_per_task != 1 ]]
	3232	then
	3233	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
	3234	else
	3235	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3236	fi
[221]	3237	fi
[437]	3238	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[179]	3239	then
[223]	3240	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3241	else
[223]	3242	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3243	fi
[1]	3244	else
[164]	3245
[206]	3246	# currently there is no full MPI-2 support on ICE and XT4
	3247	(( iia = $numprocs_atmos / $threads_per_task ))
	3248	(( iio = $numprocs_ocean / $threads_per_task ))
	3249	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3250	printf "\n using $coupled_mode coupling"
[102]	3251	printf "\n\n"
[164]	3252
[206]	3253	if [[ $coupled_mode = "mpi2" ]]
[164]	3254	then
[206]	3255	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3256	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3257	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3258	then
[197]	3259
[221]	3260	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3261	then
	3262	# export MPI_LAUNCH_TIMEOUT=360
	3263	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3264	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3265	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3266	then
	3267	# ulimit -s 300000 # A too large stack size causes problems
	3268	# export MV2_NUM_PORTS=2
	3269	# export MV2_CPU_MAPPING=0:1:2:3
	3270	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3271	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3272	fi
[197]	3273
[437]	3274	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3275	then
[197]	3276
[206]	3277	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3278	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3279
	3280	else
	3281	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3282	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3283	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3284	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3285	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3286	fi
	3287	wait
	3288
[164]	3289	else
	3290
[206]	3291	echo "coupled_run $iia $iio" > runfile_atmos
	3292	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3293	then
	3294
[221]	3295	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3296	then
	3297	# export MPI_LAUNCH_TIMEOUT=360
	3298	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3299	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3300	then
	3301	# ulimit -s 300000 # A too large stack size causes problems
	3302	# export MV2_NUM_PORTS=2
	3303	# export MV2_CPU_MAPPING=0:1:2:3
	3304	mpiexec ./a.out $ROPTS < runfile_atmos
	3305	fi
[206]	3306
[437]	3307	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
[206]	3308	then
	3309
	3310	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3311
[367]	3312	elif [[ $host = lck ]]
	3313	then
	3314	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3315	fi
	3316	wait
[164]	3317	fi
[102]	3318
	3319	# if [[ $scirocco = true ]]
	3320	# then
	3321	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3322	# else
	3323	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3324	# fi
[206]	3325	fi
[1]	3326	elif [[ $host = decalpha ]]
	3327	then
[102]	3328	dmpirun -np $numprocs a.out $ROPTS
[440]	3329	elif [[ $host = lckyoto ]]
	3330	then
	3331	set -xv
	3332	export P4_RSHCOMMAND=plesh
	3333	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
	3334	if [[ "$ENVIRONMENT" = BATCH ]]
	3335	then
	3336	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
	3337	# for pgi mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
	3338	# for intel mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
	3339	else
	3340	mpirun -np $numprocs ./a.out $ROPTS
	3341	# for intel mpiruni_rsh -np $numprocs ./a.out $ROPTS
	3342	fi
	3343	set +xv
[1]	3344	elif [[ $host = lctit ]]
	3345	then
	3346	export runfile=runfile.$kennung
	3347
	3348	echo "cd $PWD" > $runfile
	3349	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3350	echo "export cpurest=$cpurest" >> $runfile
	3351	echo "export fname=$fname" >> $runfile
	3352	echo "export localhost=$localhost" >> $runfile
	3353	echo "export return_addres=$return_addres" >> $runfile
	3354	echo "export return_username=$return_username" >> $runfile
	3355	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3356	echo "export write_binary=$write_binary" >> $runfile
	3357	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3358	echo "./a.out" >> $runfile
	3359	chmod u+x $runfile
	3360
	3361	if [[ "$QUEUE" = interactive ]]
	3362	then
[102]	3363	mpirun -np $numprocs a.out $ROPTS
[1]	3364	else
[127]	3365	(( mem_tsubame = $memory / 1024.0 ))
	3366	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3367	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3368	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3369	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3370	fi
	3371
	3372	rm $runfile
	3373	else
[102]	3374	mpprun -n $numprocs a.out $ROPTS
[1]	3375	fi
	3376	[[ $? != 0 ]] && execution_error=true
	3377
	3378
	3379	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3380	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3381	then
	3382	apprentice
	3383	fi
	3384	else
[102]	3385	a.out $ROPTS
[1]	3386	fi
	3387	fi
	3388	if [[ $? != 0 \|\| $execution_error = true ]]
	3389	then
	3390
	3391	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3392	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3393	printf "\n +++ runtime error occured"
	3394	locat=execution
	3395	exit
	3396	else
[102]	3397	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3398	printf "\n$striche\n *** execution finished \n"
[260]	3399
[261]	3400	# Stop the dvr streaming server and process the dvr output in order
	3401	# to create dvrs- and html-files containing all streams
[260]	3402	if [[ "$dvrserver_id" != "" ]]
	3403	then
	3404	kill $dvrserver_id
	3405	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3406
[262]	3407	# If there is a directory, data have been output by the
	3408	# streaming server. Otherwise, user has chosen dvrp_output=local
	3409	if [[ -d DATA_DVR ]]
	3410	then
[261]	3411
[262]	3412	# Add the current dvr configuration file to the dvr output
	3413	# directory
	3414	cp .dvrserver.config DATA_DVR
	3415
	3416	# Process the dvr output (option -s for also generating
	3417	# sequence mode data)
	3418	process_dvr_output -d DATA_DVR -f $fname -s
	3419
	3420	else
	3421
	3422	# Process the local output
	3423	process_dvr_output -l -d DATA_DVR -f $fname
	3424
	3425	fi
	3426
	3427	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3428	then
	3429
	3430	# Process dvr output generated in local mode (dvrp_output=local)
	3431	process_dvr_output -l -d DATA_DVR -f $fname
	3432
[260]	3433	fi
[1]	3434	fi
	3435
	3436
	3437
	3438	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3439	(( i = 0 ))
	3440	while (( i < ioc ))
	3441	do
	3442	(( i = i + 1 ))
	3443	if (( i == 1 ))
	3444	then
	3445	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3446	fi
	3447	printf "\n >>> ${out_command[$i]}"
	3448	eval ${out_command[$i]}
	3449	if (( i == ioc ))
	3450	then
	3451	printf "\n$striche\n"
	3452	fi
	3453	done
	3454
	3455
	3456	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3457	if [[ $do_trace = true ]]
	3458	then
	3459	printf "\n\n"
	3460	ls -al
	3461	fi
	3462
	3463
	3464
	3465	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3466	(( i = 0 ))
	3467	while (( i < iout ))
	3468	do
	3469	(( i = i + 1 ))
	3470	if (( i == 1 ))
	3471	then
	3472	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3473	fi
	3474
	3475	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3476	files_for_pes=false; filetyp=file
	3477	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3478	then
	3479	files_for_pes=true; filetyp=directory
	3480	actionout[$i]=""
	3481	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3482	then
	3483	actionout[$i]=""
	3484	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3485	then
	3486	files_for_pes=true; filetyp=directory
	3487	actionout[$i]="ar"
	3488	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3489	then
	3490	actionout[$i]="ar"
	3491	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3492	then
	3493	files_for_pes=true; filetyp=directory
	3494	actionout[$i]="fl"
	3495	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3496	then
	3497	actionout[$i]="fl"
	3498	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3499	then
	3500	files_for_pes=true; filetyp=directory
	3501	actionout[$i]="tr"
	3502	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3503	then
	3504	actionout[$i]="tr"
	3505	fi
	3506
	3507	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3508	then
	3509	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3510	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3511	then
	3512	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3513	else
	3514
	3515
	3516	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3517	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3518	# REMOTE-RECHNUNGEN
	3519	if [[ "${actionout[$i]}" = tr ]]
	3520	then
	3521	if [[ $localhost != $fromhost ]]
	3522	then
	3523	if [[ $files_for_pes = false ]]
	3524	then
	3525	cps=""
	3526	cst=""
	3527	else
	3528	cps=-c
	3529	cst="/"
	3530	fi
[325]	3531	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3532	then
	3533
	3534	# TRANSFER IN EIGENSTAENDIGEM JOB
	3535	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3536	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3537	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3538	if [[ $files_for_pes = false ]]
	3539	then
	3540	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3541	else
	3542	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3543	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3544	fi
	3545
	3546	echo "set -x" > transfer_${localout[$i]}
	3547	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3548
	3549	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3550	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3551	printf "\n or higher cycle\n"
	3552	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3553
[1]	3554	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3555
	3556	if [[ $localhost = nech ]]
	3557	then
[82]	3558	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3559	else
	3560	if [[ "$LOGNAME" = b323013 ]]
	3561	then
[164]	3562	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3563	else
[164]	3564	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3565	fi
	3566	fi
	3567
	3568	else
	3569
	3570	# TRANSFER INNERHALB DIESES JOBS
	3571	transfer_failed=false
[82]	3572	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3573	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3574	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3575	[[ $? != 0 ]] && transfer_failed=true
[1]	3576
	3577	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3578	# LOKALER MASCHINE ANLEGEN
	3579	if [[ $transfer_failed = true ]]
	3580	then
	3581	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3582	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3583
	3584	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3585	# ANLEGEN.
	3586	eval local_catalog=${pathout[$i]}
	3587	if [[ ! -d $local_catalog ]]
	3588	then
	3589	printf " *** local directory does not exist. Trying to create:\n"
	3590	printf " $local_catalog \n"
	3591	mkdir -p $local_catalog
	3592	fi
	3593	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3594	transfer_problems=true
	3595	fi
	3596	fi
	3597	else
	3598
	3599	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3600	actionout[$i]=""
	3601	fi
	3602	fi
	3603
	3604
	3605	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3606	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3607	# REMOTE-RECHNUNGEN
	3608	if [[ "${actionout[$i]}" = tra ]]
	3609	then
	3610	if [[ $localhost != $fromhost ]]
	3611	then
	3612	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3613	then
	3614
	3615	# TRANSFER IN EIGENSTAENDIGEM JOB
	3616	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3617	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3618	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3619	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3620
	3621	echo "set -x" > transfer_${localout[$i]}
	3622	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3623
	3624	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3625	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3626	printf "\n or higher cycle\n"
	3627	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3628
[1]	3629	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3630
	3631	if [[ $localhost = nech ]]
	3632	then
[82]	3633	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3634	else
	3635	if [[ $LOGNAME = b323013 ]]
	3636	then
[164]	3637	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3638	else
[164]	3639	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3640	fi
	3641	fi
	3642
	3643	else
	3644
	3645	# TRANSFER INNERHALB DIESES JOBS
	3646	transfer_failed=false
[82]	3647	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3648	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3649	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3650	[[ $? != 0 ]] && transfer_failed=true
[1]	3651
	3652	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3653	# LOKALER MASCHINE ANLEGEN
	3654	if [[ $transfer_failed = true ]]
	3655	then
	3656	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3657	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3658
	3659	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3660	# ANLEGEN
	3661	eval local_catalog=${pathout[$i]}
	3662	if [[ ! -d $local_catalog ]]
	3663	then
	3664	printf " *** local directory does not exist. Trying to create:\n"
	3665	printf " $local_catalog \n"
	3666	mkdir -p $local_catalog
	3667	fi
	3668
	3669	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3670	transfer_problems=true
	3671	fi
	3672	fi
	3673	else
	3674
	3675	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3676	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3677	actionout[$i]=a
	3678	fi
	3679	fi
	3680
	3681
	3682	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3683	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3684	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3685	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3686	if [[ "${actionout[$i]}" = fl ]]
	3687	then
	3688	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3689	chmod g+rx $tmp_data_catalog
	3690	if [[ $files_for_pes = false ]]
	3691	then
	3692	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3693	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3694	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3695	else
	3696	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3697	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3698	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3699	cd ${localout[$i]}
	3700	for file in $(ls *)
	3701	do
	3702	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3703	done
	3704	cd $TEMPDIR
[1]	3705	fi
	3706
	3707
	3708	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3709	if [[ $store_on_archive_system = true ]]
	3710	then
	3711
	3712	if [[ $archive_system = asterix ]]
	3713	then
	3714	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3715	if [[ $files_for_pes = false ]]
	3716	then
	3717	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3718	else
	3719	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3720	fi
	3721	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3722	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3723	echo "then" >> archive_${frelout[$i]}
	3724	echo " do_stageout=false" >> archive_${frelout[$i]}
	3725	echo "else" >> archive_${frelout[$i]}
	3726	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3727	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3728	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3729	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3730	if [[ $files_for_pes = false ]]
	3731	then
	3732	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3733	else
	3734	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3735	fi
	3736	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3737	echo "fi" >> archive_${frelout[$i]}
	3738	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3739	elif [[ $archive_system = DMF ]]
	3740	then
	3741	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3742	if [[ $files_for_pes = false ]]
	3743	then
	3744	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3745	locat=DMF
	3746	exit
	3747	else
	3748	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3749	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3750	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3751	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3752	fi
	3753	elif [[ $archive_system = tivoli ]]
	3754	then
	3755	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3756	if [[ $files_for_pes = false ]]
	3757	then
	3758	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3759	echo "set -x" >> archive_${frelout[$i]}
	3760	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3761	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3762	else
	3763
	3764	echo "set -x" >> archive_${frelout[$i]}
	3765	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3766	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3767	cd $tmp_data_catalog
	3768	all_files=`ls -1 ${frelout[$i]}/*`
	3769	cd - > /dev/null
	3770	(( inode = 0 ))
	3771	(( tp1 = tasks_per_node + 1 ))
	3772	while (( inode < nodes ))
	3773	do
	3774	# echo "*** all_files = \"$all_files\" "
	3775	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3776	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3777	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3778	# echo "*** files = \"$files\" "
	3779	# echo "*** all_files = \"$all_files\" "
[416]	3780	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3781	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3782	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
	3783	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[397]	3784	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3785	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3786	(( inode = inode + 1 ))
	3787	done
	3788	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3789	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3790	fi
	3791	elif [[ $archive_system = ut ]]
	3792	then
	3793	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3794	if [[ $files_for_pes = false ]]
	3795	then
	3796	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3797	echo "set -x" >> archive_${frelout[$i]}
	3798	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3799	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3800	else
	3801
	3802	echo "set -x" >> archive_${frelout[$i]}
	3803	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3804	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3805	cd $tmp_data_catalog
	3806	all_files=`ls -1 ${frelout[$i]}/*`
	3807	cd - > /dev/null
	3808	(( inode = 0 ))
	3809	(( tp1 = tasks_per_node + 1 ))
	3810	while (( inode < nodes ))
	3811	do
	3812	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3813	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3814	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3815	(( inode = inode + 1 ))
	3816	done
	3817	fi
	3818	elif [[ $archive_system = none ]]
	3819	then
	3820	printf " +++ archiving on $localhost not available!\n"
	3821	fi
	3822
	3823	if [[ $archive_system != none ]]
	3824	then
[399]	3825	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3826	then
[164]	3827	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[416]	3828	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
[1]	3829	elif [[ $localhost = nech ]]
	3830	then
[82]	3831	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3832	fi
	3833	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3834	fi
	3835	else
[399]	3836	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3837	fi
	3838
	3839
	3840	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3841	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3842	if [[ $files_for_pes = false ]]
	3843	then
	3844	cat /dev/null > ${pathout[$i]}
	3845	else
	3846	mkdir -p ${pathout[$i]}
	3847	fi
	3848
	3849	fi
	3850
	3851
	3852	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3853	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3854	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3855	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3856	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3857	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3858	if [[ "${actionout[$i]}" = ar ]]
	3859	then
	3860	if [[ $files_for_pes = false ]]
	3861	then
	3862	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3863	printf "\n ${pathout[$i]}"
	3864	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3865	else
	3866	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3867	printf "\n ${pathout[$i]}"
	3868	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3869	fi
	3870	mv ${localout[$i]} ${frelout[$i]}
	3871
	3872	file_saved=false
	3873
	3874	if [[ $archive_system = asterix ]]
	3875	then
	3876	do_stageout=true
	3877	(( stageout_anz = 0 ))
	3878	while [[ $do_stageout = true ]]
	3879	do
	3880	if [[ $files_for_pes = false ]]
	3881	then
	3882	stageout ${frelout[$i]} > STAGE_OUTPUT
	3883	else
	3884	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3885	fi
	3886	cat STAGE_OUTPUT
	3887	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3888	then
	3889	file_saved=true
	3890	do_stageout=false
	3891	else
	3892	if [[ $files_for_pes = false ]]
	3893	then
	3894	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3895	else
	3896	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3897	fi
	3898	(( stageout_anz = stageout_anz + 1 ))
	3899	if (( stageout_anz == 10 ))
	3900	then
	3901	printf "\n +++ stoped after 10 unsuccessful tries!"
	3902	archive_save=false
	3903	do_stageout=false
	3904	else
	3905	printf "\n *** new try to store on archive after 15 min:"
	3906	sleep 900
	3907	fi
	3908	fi
	3909	done
	3910	elif [[ $archive_system = DMF ]]
	3911	then
	3912	if [[ $files_for_pes = false ]]
	3913	then
	3914	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3915	locat=DMF
	3916	exit
	3917	else
	3918	rm -rf $ARCHIVE/${frelout[$i]}
	3919	cp -r ${frelout[$i]} $ARCHIVE
	3920	fi
	3921	file_saved=true
	3922	elif [[ $archive_system = tivoli ]]
	3923	then
	3924	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3925	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3926	# GELEGT WERDEN
	3927	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3928	chmod g+rx $tmp_data_catalog
	3929	if [[ $files_for_pes = false ]]
	3930	then
	3931	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3932	else
	3933	mkdir $tmp_data_catalog/${frelout[$i]}
	3934	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3935	fi
	3936
	3937	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3938	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3939	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3940	if [[ $files_for_pes = false ]]
	3941	then
	3942	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3943	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3944	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3945	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3946	else
	3947	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3948	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3949	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3950	fi
	3951
[164]	3952	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3953	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3954	file_saved=true
	3955
	3956	elif [[ $archive_system = ut ]]
	3957	then
	3958	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3959	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3960	# GELEGT WERDEN
	3961	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3962	chmod g+rx $tmp_data_catalog
	3963	if [[ $files_for_pes = false ]]
	3964	then
	3965	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3966	else
	3967	mkdir $tmp_data_catalog/${frelout[$i]}
	3968	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3969	fi
	3970
	3971	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3972	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3973	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3974	if [[ $files_for_pes = false ]]
	3975	then
	3976	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3977	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3978	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3979	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3980	else
	3981	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3982	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3983	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3984	fi
	3985
[82]	3986	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3987	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3988	file_saved=true
	3989
	3990	else
	3991	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3992	archive_save=false
	3993	fi
	3994	if [[ $file_saved = true ]]
	3995	then
	3996	if [[ $files_for_pes = false ]]
	3997	then
	3998	cat /dev/null > ${pathout[$i]}
	3999	else
	4000	mkdir -p ${pathout[$i]}
	4001	fi
	4002	fi
	4003	fi
	4004
	4005	# APPEND AUF LOKALER MASCHINE
	4006	if [[ "${actionout[$i]}" = "a" ]]
	4007	then
	4008	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	4009	cat ${localout[$i]} >> ${pathout[$i]}
	4010	fi
	4011
	4012	# KOPIEREN AUF LOKALER MASCHINE
	4013	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	4014	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	4015	then
	4016
	4017	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	4018	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	4019	then
	4020	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	4021	if [[ $link_local_output = true ]]
	4022	then
	4023	printf " using ln -f\n"
	4024	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4025	fi
	4026	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4027	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	4028	then
	4029	if [[ $link_local_output = true ]]
	4030	then
	4031	printf " ln failed, using cp...\n"
	4032	fi
	4033	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	4034	fi
[1]	4035	else
	4036	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	4037	if [[ $link_local_output = true ]]
	4038	then
	4039	printf " using ln -f\n"
	4040	ln -f ${localout[$i]} ${pathout[$i]}
	4041	fi
	4042	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	4043	if [[ ! -f "${pathout[$i]}" ]]
	4044	then
	4045	if [[ $link_local_output = true ]]
	4046	then
	4047	printf " ln failed, using cp...\n"
	4048	fi
	4049	cp ${localout[$i]} ${pathout[$i]}
	4050	fi
[1]	4051	fi
	4052
	4053	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4054	then
	4055
	4056	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4057	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4058	# WIRD DANN KOPIERT
	4059	# PER MOVE UMBENANNT WERDEN
	4060	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4061	if [[ $link_local_output = true ]]
	4062	then
	4063	printf " using ln -f\n"
	4064	mkdir ${pathout[$i]}
	4065	cd ${localout[$i]}
	4066	for file in $(ls *)
	4067	do
	4068	ln -f $file ${pathout[$i]}
	4069	done
	4070	cd $TEMPDIR
	4071	fi
	4072	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4073	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4074	then
	4075	if [[ $link_local_output = true ]]
	4076	then
	4077	printf " ln failed for .../_0000, using cp...\n"
	4078	fi
	4079	cp -r ${localout[$i]} ${pathout[$i]}
	4080	fi
[1]	4081
	4082	fi
	4083	fi
	4084	done
	4085	if (( i != 0 ))
	4086	then
	4087	if [[ $transfer_problems = true ]]
	4088	then
	4089	printf "\n$striche\n *** OUTPUT-files saved"
	4090	printf "\n +++ WARNING: some data transfers failed! \n"
	4091	else
	4092	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4093	fi
	4094	fi
	4095
	4096
	4097	# EVENTUELL FOLGEJOB STARTEN
	4098	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4099	if [[ -f CONTINUE_RUN ]]
	4100	then
	4101
	4102	if [[ $archive_save = true ]]
	4103	then
	4104
	4105	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4106	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4107	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4108	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4109	# HANDEN
	4110	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4111	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4112	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4113	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4114	then
	4115	mc=`echo $mc \| sed 's/#/f/g'`
	4116	fi
	4117
	4118
	4119	# JOB STARTEN
	4120	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4121	echo " $mc"
	4122	printf "\n$striche\n"
	4123	if [[ $localhost != $fromhost ]]
	4124	then
	4125
[204]	4126	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4127	then
	4128	echo "*** ssh will be used to initiate restart-runs!"
	4129	echo " return_addres=\"$return_addres\" "
	4130	echo " return_username=\"$return_username\" "
	4131	if [[ $return_addres = 172.20.25.41 ]]
	4132	then
	4133	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4134	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4135	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4136	then
	4137	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4138	else
[33]	4139	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4140	fi
	4141	else
	4142	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4143	locat=restart; exit
	4144	fi
	4145
	4146	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4147	# DER AKTUELLE JOB ENDET
[399]	4148	if [[ $queue = special1q ]]
	4149	then
	4150	sleep 120
	4151	else
	4152	sleep 30
	4153	fi
[1]	4154
	4155	else
	4156
	4157	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4158	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4159	cd $LOCAL_PWD
[108]	4160	if [[ $localhost = lcfimm ]]
	4161	then
	4162	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4163	else
	4164	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4165	fi
[1]	4166	cd - > /dev/null
	4167	fi
	4168	printf "\n$striche\n *** restart-run initiated \n"
	4169
	4170
	4171	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4172	# GEHOLT WORDEN SIND, LOESCHEN
	4173	(( i = 0 ))
	4174	while (( i < iin ))
	4175	do
	4176	(( i = i + 1 ))
	4177	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4178	then
	4179	rm -r $tmp_data_catalog/${frelin[$i]}
	4180	fi
	4181	done
	4182
	4183	else
	4184
	4185	printf "\n +++ no restart-run possible, since errors occured"
	4186	printf "\n during the archive process"
	4187	fi
	4188
	4189	fi
	4190
	4191
	4192
	4193	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4194	if [[ "$email_notification" != "none" ]]
[1]	4195	then
	4196
	4197	if [[ $localhost != $fromhost ]]
	4198	then
	4199	if [[ -f CONTINUE_RUN ]]
	4200	then
	4201	echo "PALM restart run necessary" > email_text
	4202	echo "description header of actual run:" >> email_text
	4203	cat CONTINUE_RUN >> email_text
	4204	echo "mrun-command to restart:" >> email_text
	4205	echo "$mc" >> email_text
	4206	else
	4207	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4208	fi
	4209	mail $email_notification < email_text
	4210	printf "\n *** email notification sent to \"$email_notification\" "
	4211	fi
	4212	fi
	4213
	4214
	4215
	4216	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4217	cd $HOME
	4218	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4219
	4220	else
	4221
	4222
	4223	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4224	# CHENDE AKTIONEN DURCHGEFUEHRT
	4225
	4226	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4227	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4228	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4229	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4230	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4231	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4232	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4233	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4234	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4235	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4236	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4237	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4238	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4239	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4240	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4241	if [[ $use_openmp = true ]]
	4242	then
	4243	mrun_com=${mrun_com}" -O"
	4244	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4245	else
	4246	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4247	fi
[397]	4248	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4249	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4250	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4251	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4252	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4253	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4254	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4255	if [[ $do_remote = true ]]
	4256	then
	4257	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4258	fi
	4259
	4260
	4261	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4262	jobfile=jobfile.$RANDOM
	4263
	4264
	4265	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4266	echo "mkdir $TEMPDIR" >> $jobfile
	4267	echo "cd $TEMPDIR" >> $jobfile
	4268
	4269
	4270	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4271	if [[ $do_trace = true ]]
	4272	then
	4273	echo "set -x" >> $jobfile
	4274	else
	4275	echo "set +vx" >> $jobfile
	4276	fi
	4277
	4278
[191]	4279	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4280	# DATEI FUER DEN JOB
	4281	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4282	then
	4283
[191]	4284	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4285	# KOPIEREN
	4286	if [[ $restart_run != true ]]
	4287	then
	4288	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4289	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4290	fi
[1]	4291
[191]	4292	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4293	echo "set -x" >> $jobfile
	4294	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4295	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4296
[193]	4297	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4298	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4299	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4300	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4301	echo "execute_mrun=true" >> $jobfile
	4302	echo " " >> $jobfile
	4303
[191]	4304	else
	4305
	4306	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4307	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4308	if [[ $do_compile = true ]]
	4309	then
	4310
	4311	source_catalog=SOURCES_FOR_RUN_$fname
	4312
	4313	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4314	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4315	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4316	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4317	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4318	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4319
	4320	for filename in $source_list
	4321	do
	4322	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4323	echo "cat > $filename << \"%END%\"" >> $jobfile
	4324	cat $source_catalog/$filename >> $jobfile
	4325	echo " " >> $jobfile
	4326	echo "%END%" >> $jobfile
	4327	echo " " >> $jobfile
	4328	done
	4329
[1]	4330	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4331	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4332	cat $source_catalog/Makefile >> $jobfile
[1]	4333	echo " " >> $jobfile
	4334	echo "%END%" >> $jobfile
	4335	echo " " >> $jobfile
	4336
[191]	4337	echo "cd - > /dev/null" >> $jobfile
[1]	4338
[191]	4339	fi
[1]	4340
	4341
[191]	4342	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4343	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4344	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4345	cat $config_file >> $jobfile
	4346	echo "%END%" >> $jobfile
	4347	echo " " >> $jobfile
[1]	4348
	4349
[191]	4350	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4351	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4352	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4353	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4354	echo "%END%" >> $jobfile
	4355	if [[ $host = lctit ]]
	4356	then
	4357	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4358	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4359	fi
	4360	echo "chmod u+x $mrun_script_name" >> $jobfile
	4361	echo "execute_mrun=true" >> $jobfile
	4362	echo " " >> $jobfile
[1]	4363
	4364	fi
	4365
[191]	4366
[1]	4367	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4368	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4369	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4370	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4371	if [[ $do_remote = true ]]
	4372	then
	4373	(( i = 0 ))
	4374	while (( i < iin ))
	4375	do
	4376	(( i = i + 1 ))
	4377	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4378	if [[ "${transin[$i]}" = job ]]
	4379	then
	4380	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4381	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4382	echo " " >> $jobfile
	4383	echo "%END%" >> $jobfile
	4384	else
[82]	4385	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4386	fi
	4387
	4388	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4389	echo "if [[ \$? = 1 ]]" >> $jobfile
	4390	echo "then" >> $jobfile
	4391	echo " echo \" \" " >> $jobfile
	4392	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4393	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4394	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4395	echo " execute_mrun=false" >> $jobfile
	4396	echo "fi" >> $jobfile
	4397	done
	4398	fi
	4399
	4400	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4401	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4402	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4403	echo "export LOCAL_PWD" >> $jobfile
	4404
	4405	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4406	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4407	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4408
[66]	4409	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4410	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4411	then
	4412	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4413	fi
[1]	4414
	4415	# MRUN AUF ZIELRECHNER AUFRUFEN
	4416	echo "set -x" >> $jobfile
	4417	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4418
	4419	echo 'ls -al; echo `pwd`' >> $jobfile
	4420	echo "cd \$HOME" >> $jobfile
	4421	echo "rm -rf $TEMPDIR" >> $jobfile
	4422
	4423
	4424
	4425
	4426	# JOB PER SUBJOB STARTEN
	4427	if [[ $silent = false ]]
	4428	then
	4429	printf "\n "
	4430	else
	4431	printf "\n\n"
	4432	fi
	4433
[352]	4434	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4435	rm -rf $jobfile
	4436
	4437
	4438	fi # ENDE REMOTE-TEIL
	4439
	4440
	4441
	4442	# ENDE DER PROZEDUR

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