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source: palm/trunk/SCRIPTS/mrun @ 410

Last change on this file since 410 was 405, checked in by raasch, 15 years ago
some initial data assignments changed due to problems with gfortran compiler; bugfix in docu chapter 3.5.4; mrun test modification for hybrid mpi-openmp
Property svn:keywords set to `Id Rev`
File size: 167.3 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 405 2009-11-16 12:20:59Z letzel $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[397]	192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
	193	# switches on archiving, archiving on SGI-ICE enabled
[399]	194	# 16/10/09 - Carolin - adjustments for archiving on SGI-ICE of binary files;
	195	# adjustment for special1q
[211]	196
[1]	197
	198	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	199
	200	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	201	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	202	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	203
	204	AddFilenames=""
	205	additional_conditions=""
	206	add_source_path=""
	207	afname=""
	208	archive_save=true
	209	archive_system=none
	210	compiler_name=""
	211	cond1=""
	212	cond2=""
	213	config_file=.mrun.config
[206]	214	coupled_dist=""
	215	coupled_mode="mpi1"
[1]	216	cpp_opts=""
[82]	217	cpp_options=""
[1]	218	cpumax=0
	219	cpurest=0
	220	delete_temporary_catalog=true
	221	do_batch=false
	222	do_compile=true
	223	do_remote=false
	224	do_stagein=true
	225	do_stageout=true
	226	do_trace=false
[352]	227	email_notification="none"
[1]	228	exclude=""
	229	executable=""
	230	execution_error=false
[67]	231	fimm=false
[1]	232	fname=test
	233	fromhost=""
[78]	234	global_revision=""
[122]	235	group_number=none
[1]	236	host=""
	237	host_file=""
	238	hp=""
	239	ignore_archive_error=false
	240	input_list=""
	241	interpreted_config_file=""
[164]	242	job_catalog="~/job_queue"
[1]	243	job_on_file=""
	244	keep_data_from_previous_run=false
[183]	245	link_local_input=false
[149]	246	link_local_output=false
[1]	247	localhost_realname=$(hostname)
	248	local_compile=false
[260]	249	local_dvrserver_running=.FALSE.
[1]	250	locat=normal
	251	mainprog=""
	252	makefile=""
	253	mc=$0
	254	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	255	do
	256	mc=`echo $mc \| cut -f2- -d"/"`
	257	done
	258	module_files=""
	259	mrun_script_name=$mc
[82]	260	netcdf_inc=""
	261	netcdf_lib=""
[1]	262	netcdf_support=false
	263	node_usage=default
	264	numprocs=""
[206]	265	numprocs_atmos=0
	266	numprocs_ocean=0
[1]	267	OOPT=""
	268	openmp=false
	269	output_list=""
	270	package_list=""
	271	punkte="..........................................................."
	272	queue=none
	273	read_from_config=""
[5]	274	restart_run=false
[146]	275	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	276	if [[ $return_addres = 130.75.105.158 ]]
	277	then
	278	return_addres=172.20.25.41
	279	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	280	fi
	281	return_password=""
	282	return_username=$LOGNAME
	283	remotecall=false
	284	remote_username=""
[102]	285	run_coupled_model=false
[1]	286	run_mode=""
	287	scirocco=false
[397]	288	store_on_archive_system=false
[1]	289	striche=" ----------------------------------------------------------------------------"
	290	silent=false
	291	source_list=""
	292	source_path=SOURCE
	293	tasks_per_node=""
	294	threads_per_task=1
	295	tmpcreate=false
	296	tmp_data_catalog=""
	297	transfer_problems=false
	298	usern=$LOGNAME
[377]	299	use_openmp=false
[1]	300	working_directory=`pwd`
	301	TOPT=""
	302	XOPT=""
	303	zeit=$( date \| cut -c 12-19 )
	304
	305	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	306	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	307
[66]	308	typeset -R30 calltime
[1]	309	typeset -L20 spalte1
	310	typeset -L40 spalte2
	311	typeset -L60 spalte3
	312	typeset -L35 string1=`date`
	313	typeset -L12 string2=$usern
	314	typeset -L12 string3=$localhost_realname
	315	typeset -L12 string4
	316	typeset -L12 string5
[201]	317	typeset -L30 version="MRUN 2.0 Rev$Rev: 405 $"
[1]	318
	319
	320
	321	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	322	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	323
	324	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	325	# EXPORTIERT WERDEN
	326	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	327	export group_number input_list memory numprocs output_list queue run_mode
[1]	328
	329
	330
	331	# FEHLERBEHANDLUNG
	332	# BEI EXIT:
[83]	333	trap 'rm -rf $working_directory/tmp_mrun
[69]	334	if [[ $locat != localhost ]]
[1]	335	then
[22]	336	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	337	# then
	338	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	339	#MRUN-calls on $localhost
	340	#
	341	#date and time user localhost remotehost termination mrun-command
	342	#--------------------------------------------------------------------------------------------------------------------
	343	#%STATEND%
	344	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	345	# fi
	346	#
	347	# # EINTRAG IN DIE STATISTIK-DATEI
	348	# string4=$host
	349	# string5=$locat
	350	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	351	# then
	352	# if [[ $do_batch = true ]]
	353	# then
	354	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	355	# else
	356	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	357	# fi
	358	# fi
[69]	359	echo " " > /dev/null
[1]	360	fi
	361
	362	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	363	then
	364
	365	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	366	(( i = 0 ))
	367	while (( i < iec ))
	368	do
	369	(( i = i + 1 ))
	370	printf "\n *** Execution of ERROR-command:\n"
	371	printf " >>> ${err_command[$i]}\n"
	372	eval ${err_command[$i]}
	373	done
	374	if [[ -n $interpreted_config_file ]] then
	375	rm -rf $interpreted_config_file
	376	fi
[71]	377	if [[ -n .mrun_environment ]] then
	378	rm -rf .mrun_environment
	379	fi
[1]	380	if [[ $tmpcreate = true ]]
	381	then
	382	printf "\n *** Contents of \"$TEMPDIR\":\n"
	383	ls -al; cd
	384	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	385	fi
[260]	386	if [[ "$dvrserver_id" != "" ]]
	387	then
	388	echo "+++ killing dvrserver_id=$dvrserver_id"
	389	kill $dvrserver_id
	390	fi
[1]	391	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	392	then
	393	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	394	fi
	395	printf "\n\n+++ MRUN killed \n\n"
	396	elif [[ $locat != control_c ]]
	397	then
	398	printf "\n\n --> all actions finished\n\n"
	399	printf " Bye, bye $usern !!\n\n"
	400	fi' exit
	401
	402
	403	# BEI TERMINAL-BREAK:
[83]	404	trap 'rm -rf $working_directory/tmp_mrun
[69]	405	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	406	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	407	then
	408	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	409	fi
[260]	410	if [[ "$dvrserver_id" != "" ]]
	411	then
	412	echo "+++ killing dvrserver_id=$dvrserver_id"
	413	kill $dvrserver_id
	414	fi
[1]	415	printf "\n+++ MRUN killed by \"^C\" \n\n"
	416	locat=control_c
	417	exit
	418	' 2
	419
	420
[22]	421	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	422	# BEEN SET
	423	if [[ "$PALM_BIN" = "" ]]
	424	then
	425	printf "\n +++ environment variable PALM_BIN has not been set"
	426	printf "\n please set it to the directory where the PALM scripts are located"
	427	locat=palm_bin; exit
	428	fi
[180]	429	export PATH=$PALM_BIN:$PATH
[22]	430
	431
[1]	432
	433	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	434	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	435	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	436	do
	437	case $option in
	438	(a) afname=$OPTARG;;
[397]	439	(A) store_on_archive_system=true; mc="$mc -A";;
[1]	440	(b) do_batch=true; mc="$mc -b";;
	441	(B) delete_temporary_catalog=false; mc="$mc -B";;
	442	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	443	(C) restart_run=true; mc="$mc -C";;
[1]	444	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	445	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	446	(F) job_on_file="-D"; mc="$mc -F";;
[122]	447	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	448	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	449	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	450	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	451	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	452	(I) ignore_archive_error=true; mc="$mc -I";;
	453	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	454	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	455	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	456	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	457	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	458	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	459	(O) use_openmp=true; mc="$mc -O";;
	460	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	461	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	462	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	463	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	464	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	465	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	466	(S) read_from_config=false; mc="$mc -S";;
	467	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	468	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	469	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	470	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	471	(v) silent=true; mc="$mc -v";;
	472	(x) do_trace=true;set -x; mc="$mc -x";;
	473	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	474	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	475	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	476	(\?) printf "\n +++ unknown option $OPTARG \n"
	477	printf "\n --> type \"$0 ?\" for available options \n"
	478	locat=parameter;exit;;
	479	esac
	480	done
	481
	482
	483	# EVTL. POSITIONSPARAMETER EINLESEN
	484	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	485	shift OPTIND-1
	486
	487
	488	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	489	if [[ "$1" = "?" ]]
	490	then
	491	(printf "\n *** mrun can be called as follows:\n"
[291]	492	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	493	printf "\n Description of available options:\n"
	494	printf "\n Option Description Default-Value"
	495	printf "\n -a base name of input files equiv. -d"
[400]	496	printf "\n -A archiving when using file-attribute fl"
[1]	497	printf "\n -b batch-job on local machine ---"
	498	printf "\n -B do not delete temporary directory at end ---"
	499	printf "\n -c configuration file .mrun.config"
	500	printf "\n -d base name of files attached to program test"
	501	printf "\n -D preprocessor(cpp)-directives \"\" "
	502	printf "\n -F create remote job file only ---"
	503	printf "\n -h execution host $localhost_realname"
	504	printf "\n -i INPUT control list \"\" "
	505	printf "\n -I archiving errors of previous batch-jobs"
	506	printf "\n will be ignored"
	507	printf "\n -k keep data from previous run"
	508	printf "\n -K additional conditions for controling"
	509	printf "\n usage of conditional code and"
	510	printf "\n env-variables in configuration file \"\" "
	511	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	512	printf "\n -M Makefile name Makefile"
	513	printf "\n -n node usage (shared/not_shared) depending on -h"
	514	printf "\n -o OUTPUT control list \"\" "
	515	printf "\n -O use OpenMP ---"
	516	printf "\n -p software package list \"\" "
	517	printf "\n -q queue \"$queue\" "
	518	printf "\n -r run control list (combines -i -o) \"\" "
	519	printf "\n -s filenames of routines to be compiled \"\" "
	520	printf "\n must end with .f, .f90, .F, or .c !"
	521	printf "\n use \"..\" for more than one file and wildcards"
	522	printf "\n -s TEST compiles all files with w-permit"
	523	printf "\n -S config file interpreted by shellscript ---"
	524	printf "\n -t allowed cpu-time in seconds (batch) 0"
	525	printf "\n -T tasks per node depending on -h"
	526	printf "\n -u username on remote machine \"\" "
	527	printf "\n -v no prompt for confirmation ---"
	528	printf "\n -x tracing of mrun for debug purposes ---"
	529	printf "\n -X # of processors (on parallel machines) 1"
[291]	530	printf "\n -y add appendix \"_O\" to all local output"
	531	printf "\n files (ocean precursor runs followed by"
	532	printf "\n coupled atmosphere-ocean runs) ---"
[206]	533	printf "\n -Y run coupled model, \"#1 #2\" with"
	534	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	535	printf "\n "
	536	printf "\n Possible values of positional parameter <modus>:"
	537	printf "\n \"?\" - this outline \n\n") \| more
	538	exit
	539	elif [[ "$1" != "" ]]
	540	then
	541	printf "\n +++ positional parameter $1 unknown \n"
	542	locat=parameter; exit
	543	fi
	544
	545
	546
	547	# KURZE STARTMELDUNG
	548	printf "\n*** $version "
	549	printf "\n will be executed. Please wait ..."
	550
	551
[82]	552
	553	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	554	if [[ ! -f $config_file ]]
	555	then
	556	printf "\n\n +++ configuration file: "
	557	printf "\n $config_file"
	558	printf "\n does not exist"
	559	locat=connect; exit
	560	fi
	561
	562
	563	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	564	line=""
	565	grep "%host_identifier" $config_file > tmp_mrun
	566	while read line
	567	do
[206]	568	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	569	then
	570	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	571	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	572	if [[ $localhost_realname = $HOSTNAME ]]
[82]	573	then
	574	localhost=$host_identifier
	575	break
	576	fi
	577	fi
	578	done < tmp_mrun
	579
	580	if [[ "$localhost" = "" ]]
	581	then
	582	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	583	printf "\n for local host \"$localhost_realname\"."
	584	printf "\n Please add line"
	585	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	586	printf "\n to the configuration file."
	587	locat=localhost; exit
	588	fi
	589
	590
	591	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	592	case $localhost_realname in
[397]	593	(r1\|r2\|h01\|b01) archive_system=tivoli;;
[82]	594	(cs*) archive_system=ut;;
	595	(fimm.bccs.uib.no) fimm=true;;
	596	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	597	(scirocco) scirocco=true;;
	598	esac
	599
	600
	601
[1]	602	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	603	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	604	[[ "$afname" = "" ]] && afname=$fname
	605
	606
	607	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	608	if [[ "$run_mode" != "" ]]
	609	then
	610	input_list="$input_list $run_mode"
	611	output_list="$output_list $run_mode"
	612	fi
	613
	614
	615	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	616	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	617	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	618	# STARTET)
	619	if [[ "$fromhost" = "" ]]
	620	then
	621	fromhost=$localhost
	622	fi
	623
	624
	625	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	626	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	627	then
	628	source_list=TEST
	629	local_compile=true
	630	host=$localhost
	631	fi
	632
	633
	634	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	635	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	636	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	637	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	638	if [[ -n $host && "$host" != $localhost ]]
	639	then
	640	do_batch=true
	641	do_remote=true
	642	case $host in
[367]	643	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	644	(*) printf "\n"
[83]	645	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	646	printf "\n is not available"
[1]	647	locat=nqs; (( iec = 0 )); exit;;
	648	esac
	649	else
	650	host=$localhost
	651	fi
	652
	653
	654	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	655	if [[ -n $additional_conditions ]]
	656	then
[69]	657	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	658	cond1=`echo $additional_conditions \| cut -d" " -f1`
	659	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	660	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	661	if [[ -n $dummy ]]
	662	then
	663	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	664	locat=options; exit
	665	fi
	666	fi
	667
	668
[206]	669	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	670	if [[ $run_coupled_model = true ]]
	671	then
	672
	673	if [[ -n $coupled_dist ]]
	674	then
	675
	676	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	677	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	678
	679	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	680	then
	681
	682	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	683	printf "\n PEs (total) : $numprocs"
	684	printf "\n PEs (atmosphere): $numprocs_atmos"
	685	printf "\n PEs (ocean) : $numprocs_ocean"
	686	locat=coupling; exit
	687
	688	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	689	# THIS SHOULD BE REMOVED IN FUTURE
	690	elif (( $numprocs_ocean != $numprocs_atmos ))
	691	then
	692
	693	printf "\n +++ currently only 1:1 topologies are supported"
	694	printf "\n PEs (total) : $numprocs"
	695	printf "\n PEs (atmosphere): $numprocs_atmos"
	696	printf "\n PEs (ocean) : $numprocs_ocean"
	697	(( numprocs_atmos = $numprocs / 2 ))
	698	(( numprocs_ocean = $numprocs / 2 ))
	699	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	700
	701	fi
	702
	703	else
	704
	705	(( numprocs_ocean = $numprocs / 2 ))
	706	(( numprocs_atmos = $numprocs / 2 ))
	707
	708	fi
	709	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	710
	711	# GET coupled_mode FROM THE CONFIG FILE
	712	line=""
	713	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	714	while read line
	715	do
	716	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	717	then
	718	coupled_mode="mpi2"
	719	fi
	720	done < tmp_mrun
	721
	722	fi
	723
	724
[1]	725	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	726	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	727	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	728	then
	729	if [[ $ignore_archive_error = false ]]
	730	then
	731	printf "\n +++ data archiving of previous run failed"
	732	printf "\n see directory \~/job_queue on remote machine"
	733	locat=archive; exit
	734	else
	735	printf "\n +++ warning: data archiving in a previous run failed"
	736	printf "\n MRUN continues, trying to get backup copy"
	737	fi
	738	fi
	739
	740
	741
	742	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	743	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	744	if [[ "$read_from_config" = false ]]
	745	then
	746
	747	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	748	while read zeile
	749	do
	750	[[ $silent = false ]] && printf "."
	751
	752
	753	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	754	# ERSETZEN
	755	eval zeile=\"$zeile\"
	756
	757
	758	# INTERPRETATION DER ZEILE
[21]	759	if [[ "$(echo $zeile)" = "" ]]
[1]	760	then
[21]	761	# LEERZEILE, KEINE AKTION
	762	continue
[1]	763
[21]	764	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	765	then
	766
[1]	767	# ZEILE IST KOMMENTARZEILE
	768	true
	769
	770	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	771	then
	772
	773	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	774	zeile=$(echo $zeile \| cut -c2-)
[69]	775	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	776	var=`echo $zeile \| cut -d" " -f1`
	777	value=`echo $zeile \| cut -d" " -s -f2`
	778	for_host=`echo $zeile \| cut -d" " -s -f3`
	779	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	780	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	781
	782	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	783	then
	784
	785	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	786	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	787	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	788
	789
	790	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	791	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	792	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	793	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	794	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	795	# KONFIGURATIONSDATEI
	796	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	797	then
	798	eval $var=\$value
	799
	800	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	801	if [[ $do_trace = true ]]
	802	then
	803	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	804	fi
	805	fi
	806
	807	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	808	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	809	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	810	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	811	if [[ $var = host ]]
	812	then
	813	if [[ -n $host && "$host" != $localhost ]]
	814	then
	815	do_batch=true
	816	do_remote=true
	817	case $host in
[367]	818	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	819	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	820	printf "\n is not available"
[1]	821	locat=nqs; exit;;
	822	esac
	823	else
	824	host=$localhost
	825	fi
	826	fi
	827
	828	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	829	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	830	# DEN PROGRAMMEN BENOETIGT WERDEN
	831	export $var
	832	fi
	833
	834
	835
	836
	837	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	838	then
	839
	840	# ZEILE DEFINIERT ERROR-KOMMANDO
	841	(( iec = iec + 1 ))
	842	zeile=$(echo $zeile \| cut -c4-)
	843	err_command[$iec]="$zeile"
	844
	845	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	846	then
	847
	848	# ZEILE DEFINIERT INPUT-KOMMANDO
	849	(( iic = iic + 1 ))
	850	zeile=$(echo $zeile \| cut -c4-)
	851	in_command[$iic]="$zeile"
	852
	853	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	854	then
	855
	856	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	857	(( ioc = ioc + 1 ))
	858	zeile=$(echo $zeile \| cut -c4-)
	859	out_command[$ioc]="$zeile"
	860
	861	else
	862
	863	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	864	# s2a: in/out - Feld
	865	# s2b: loc - Feld (optional)
	866	# s2c: tr/ar - Feld (optional)
[69]	867	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	868	s1=`echo $zeile \| cut -d" " -f1`
	869	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	870	s2a=$(echo $s2 \| cut -d":" -f1)
	871	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	872	then
	873	s2b=""
	874	s2c=""
	875	else
[69]	876	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	877	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	878	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	879	fi
[69]	880	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	881	s3=`echo $zeile \| cut -d" " -f3`
	882	s4=`echo $zeile \| cut -d" " -s -f4`
	883	s5=`echo $zeile \| cut -d" " -s -f5`
	884	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	885
	886
	887	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	888	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	889	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	890	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	891	# HANDEN SEIN MUSS (D.H. s2b = loc)
	892	IFSALT="$IFS"; IFS="$IFS:"
	893	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	894	then
	895	found=false
	896	for actual in $input_list
	897	do
	898	for formal in $s3
	899	do
	900	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	901	done
	902	done
	903	if [[ $found = true ]]
	904	then
	905	(( iin = iin + 1 ))
	906	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	907	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	908	extin[$iin]=$s6
	909	fi
	910	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	911	then
	912	found=false
	913	for actual in $output_list
	914	do
	915	for formal in $s3
	916	do
	917	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	918	done
	919	done
	920	if [[ $found = true ]]
	921	then
	922	(( iout = iout + 1 ))
	923	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	924	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	925	fi
	926	elif [[ "$s2a" != in && "$s2a" != out ]]
	927	then
	928	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	929	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	930	locat=connect; exit
	931	fi
	932	IFS="$IFSALT"
	933	fi
	934	done < $config_file
	935
	936	else
	937
	938
	939	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	940	[[ $silent = false ]] && printf "..."
	941	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	942	export interpreted_config_file=.icf.$RANDOM
	943
	944
[69]	945
	946	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	947	# VERFUEGUNG STELLEN
	948	cat > .mrun_environment << %%END%%
	949	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	950	config_file = '$config_file', do_remote = '$do_remote',
	951	do_trace = '$do_trace', host = '$host',
	952	input_list = '$input_list', icf = '$interpreted_config_file',
	953	localhost = '$localhost', output_list = '$output_list' /
	954
	955	%%END%%
	956
	957	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	958	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	959	mrun_memory=$memory
[127]	960	mrun_group_number=$group_number
[69]	961	mrun_cpumax=$cpumax
	962	mrun_numprocs=$numprocs
	963
[251]	964	if [[ $localhost_realname = "sx-fep" ]]
[66]	965	then
[251]	966	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	967	else
	968	interpret_config.x
	969	fi
[71]	970	rm .mrun_environment
[1]	971
[71]	972
[1]	973	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	974	chmod u+x $interpreted_config_file
	975	export PATH=$PATH:.
	976	. $interpreted_config_file
[71]	977	rm $interpreted_config_file
[1]	978
[71]	979
[69]	980	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	981	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	982	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	983	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	984	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	985
[1]	986	fi
	987
	988
	989	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	990	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	991	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	992	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	993	if [[ "$SOURCES_COMPLETE" = "" ]]
	994	then
	995
	996	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	997	# VEREINBART WURDE
	998	source_path=""
	999	line=""
	1000	grep "%source_path" $config_file > tmp_mrun
	1001	while read line
	1002	do
	1003	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1004	then
	1005	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1006	then
	1007	global_source_path=`echo $line \| cut -d" " -f2`
	1008	fi
	1009	fi
	1010	done < tmp_mrun
	1011
	1012	line=""
	1013	found=false
	1014	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1015	while read line
	1016	do
	1017	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1018	then
	1019	if [[ $found = true ]]
	1020	then
	1021	printf "\n\n +++ more than one source path found in configuration file"
	1022	printf "\n for local host \"$localhost\" "
	1023	locat=source_path; exit
	1024	fi
	1025	source_path=`echo $line \| cut -d" " -f2`
	1026	found=true
	1027	fi
	1028	done < tmp_mrun
	1029	rm tmp_mrun
	1030
	1031	if [[ "$source_path" = "" ]]
	1032	then
	1033	if [[ "$global_source_path" != "" ]]
	1034	then
	1035	source_path=$global_source_path
	1036	else
	1037	printf "\n\n +++ no source path found in configuration file"
	1038	printf "\n for local host \"$localhost\" "
	1039	locat=source_path; exit
	1040	fi
	1041	fi
	1042	eval source_path=$source_path
	1043
	1044	if [[ ! -d $source_path ]]
	1045	then
	1046	printf "\n\n +++ source path \"$source_path\" on local host"
	1047	printf "\n \"$localhost\" does not exist"
	1048	locat=source_path; exit
	1049	fi
	1050
	1051	fi
	1052
	1053
[78]	1054	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1055	# DURCH OPTION -G MITGETEILT)
	1056	if [[ "$global_revision" = "" ]]
	1057	then
	1058	global_revision=`svnversion $source_path 2>/dev/null`
	1059	global_revision="Rev: $global_revision"
	1060	fi
[1]	1061
[78]	1062
[1]	1063	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1064	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1065	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1066	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1067	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1068	if [[ -n $host && "$host" != $localhost ]]
	1069	then
	1070	do_batch=true
	1071	do_remote=true
	1072	case $host in
[367]	1073	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1074	(*) printf "\n"
[83]	1075	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1076	printf "\n is not available"
[1]	1077	locat=nqs; (( iec = 0 )); exit;;
	1078	esac
	1079	else
	1080	host=$localhost
	1081	fi
	1082
	1083
	1084	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1085	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1086	then
	1087
	1088	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1089	if [[ ! -n $numprocs ]]
	1090	then
	1091	printf "\n"
	1092	printf "\n +++ option \"-K parallel\" requires additional specification"
	1093	printf "\n of the number of processors to be used by"
	1094	printf "\n mrun-option \"-X\" or by environment-variable"
	1095	printf "\n \"numprocs\" in the configuration file"
	1096	locat=numprocs; (( iec = 0 )); exit
	1097	fi
	1098
	1099	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1100	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1101	# GESAMTPROZESSORANZAHL IST
[251]	1102	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1103	then
	1104	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1105	(( ival = $tasks_per_node ))
	1106	(( pes = numprocs ))
	1107	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1108	# then
	1109	# (( pes = pes - 1 ))
	1110	# fi
	1111	(( ii = pes / ival ))
	1112	if (( pes - ii * ival > 0 ))
	1113	then
	1114	printf "\n"
	1115	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1116	printf "\n divisor of the total number of processors (option \"-X\")"
	1117	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1118	locat=tasks_per_node; (( iec = 0 )); exit
	1119	fi
	1120	fi
	1121
	1122	# IBMY HAT NUR EINEN KNOTEN
	1123	if [[ $host = ibmy ]]
	1124	then
	1125	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1126	then
	1127	printf "\n"
	1128	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1129	printf "\n total number of processors (option \"-X\")"
	1130	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1131	locat=tasks_per_node; (( iec = 0 )); exit
	1132	fi
	1133	fi
	1134
	1135	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1136	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1137	if [[ $use_openmp = true ]]
	1138	then
	1139	threads_per_task=$tasks_per_node
	1140	tasks_per_node=1
	1141	fi
[377]	1142
	1143	# SETTINGS FOR SUBJOB-COMMAND
	1144	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1145	then
	1146	(( tp1 = tasks_per_node * threads_per_task ))
	1147	TOPT="-T $tp1"
	1148	else
	1149	TOPT="-T $tasks_per_node"
	1150	fi
[1]	1151	OOPT="-O $threads_per_task"
	1152
	1153	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1154	if [[ "$tasks_per_node" != "" ]]
	1155	then
	1156	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1157	fi
	1158
	1159	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1160	# SETZEN
	1161	if [[ $node_usage = default ]]
	1162	then
	1163	if [[ $host = ibms ]]
	1164	then
	1165	node_usage=shared
[118]	1166	elif [[ $host = lctit ]]
	1167	then
[265]	1168	node_usage=RAM64GB
[181]	1169	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1170	then
	1171	node_usage=singlejob
[1]	1172	else
	1173	node_usage=not_shared
	1174	fi
	1175	fi
[181]	1176
[265]	1177	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1178	then
	1179	printf "\n"
	1180	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1181	printf "\n \"shared\" or \"not_shared\""
	1182	locat=tasks_per_node; (( iec = 0 )); exit
	1183	fi
	1184
	1185	fi
	1186
	1187	# PRUEFEN, OB HOSTFILE EXISTIERT
	1188	if [[ -n $hostfile ]]
	1189	then
	1190	if [[ ! -f $hostfile ]]
	1191	then
	1192	printf "\n"
	1193	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1194	locat=hostfile; exit
	1195	fi
	1196	fi
	1197
	1198	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1199	if [[ $host = ibmy && $do_remote = false ]]
	1200	then
	1201	if [[ ! -f $HOME/.rhosts ]]
	1202	then
	1203	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1204	printf "\n\n *** file:"
	1205	printf "\n $HOME/.rhosts"
	1206	printf "\n was created\n"
	1207	fi
	1208	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1209	then
	1210	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1211	printf "\n\n *** file:"
	1212	printf "\n $HOME/.rhosts"
	1213	printf "\n was extended by the name of the current host\n"
	1214	fi
	1215	fi
	1216
	1217
	1218
	1219	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1220	if [[ $queue = none ]]
	1221	then
	1222	case $host in
	1223	(ibmb) if [[ $node_usage = shared ]]
	1224	then
	1225	queue=cshare
	1226	else
	1227	queue=csolo
	1228	fi;;
[312]	1229	(ibmh) queue=no_class;;
[1]	1230	(ibmy) queue=parallel;;
[191]	1231	(lcsgib) queue=bigq;;
	1232	(lcsgih) queue=bigq;;
[265]	1233	(lctit) queue=RAM64GB;;
[1]	1234	(nech) queue=none;;
[253]	1235	(necriam) queue=SP;;
[1]	1236	(unics) queue=unics;;
	1237	esac
	1238	fi
	1239
	1240
	1241	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1242	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1243	# ERMITTELN
	1244	(( i = 0 ))
	1245	while (( i < iin ))
	1246	do
	1247	(( i = i + 1 ))
	1248	(( maxcycle = 0 ))
	1249
	1250	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1251	if [[ "${actionin[$i]}" = di ]]
	1252	then
	1253	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1254	# REM-MASCHINE AUSWERTEN
	1255	eval filename=${pathin[$i]}/${endin[$i]}
	1256	else
	1257	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1258	# REM-MASCHINE AUSWERTEN
	1259	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1260	fi
	1261
	1262	# PRUEFEN AUF VORHANDENSEIN
	1263	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1264	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1265	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1266	then
	1267	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1268	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1269	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1270	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1271	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1272	if [[ "${transin[$i]}" != "locopt" ]]
	1273	then
	1274	printf "\n\n +++ INPUT-file: "
	1275	if [[ "${extin[$i]}" = "" ]]
	1276	then
	1277	printf "\n $filename"
	1278	else
	1279	printf "\n $filename.${extin[$i]}"
	1280	fi
	1281	printf "\n does not exist\n"
	1282	locat=input; exit
	1283	else
	1284	transin[$i]="unavailable"
	1285	fi
	1286	else
	1287
	1288	# ZYKLUSNUMMER FESTSTELLEN
	1289	ls -1 -d $filename > filelist 2>/dev/null
	1290	ls -1 -d $filename.* >> filelist 2>/dev/null
	1291	while read zeile
	1292	do
	1293	cycle=$(print $zeile \| cut -f2 -d".")
	1294	if [[ "$cycle" = "$zeile" ]]
	1295	then
	1296	(( icycle = 0 ))
	1297	elif [[ "$cycle" = "${extin[$i]}" ]]
	1298	then
	1299	(( icycle = 0 ))
	1300	else
	1301	(( icycle = $cycle ))
	1302	fi
	1303	if (( icycle > maxcycle ))
	1304	then
	1305	(( maxcycle = icycle ))
	1306	file_to_be_used=$zeile
	1307	fi
	1308	done <filelist
	1309	rm filelist
	1310
	1311	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1312	if (( maxcycle > 0 ))
	1313	then
	1314	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1315	then
	1316	filename=${filename}.$maxcycle.${extin[$i]}
	1317	else
	1318	filename=${filename}.$maxcycle
	1319	fi
	1320	else
	1321	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1322	then
	1323	filename=${filename}.${extin[$i]}
	1324	fi
	1325	fi
	1326
	1327	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1328	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1329	absnamein[$i]=$filename
	1330	if (( maxcycle > 0 ))
	1331	then
	1332	if [[ "${actionin[$i]}" = di ]]
	1333	then
	1334	frelin[$i]=${endin[$i]}.$maxcycle
	1335	else
	1336	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1337	fi
	1338	else
	1339	if [[ "${actionin[$i]}" = di ]]
	1340	then
	1341	frelin[$i]=${endin[$i]}
	1342	else
	1343	frelin[$i]=${afname}${endin[$i]}
	1344	fi
	1345	fi
	1346
	1347	fi
	1348	done
	1349
	1350
	1351	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1352	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1353	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1354	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1355	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1356	(( i = 0 ))
	1357	while (( i < iout ))
	1358	do
	1359	(( i = i + 1 ))
	1360	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1361	then
[260]	1362	if [[ "${actionout[$i]}" = tr ]]
[1]	1363	then
	1364	actionout[$i]=""
[260]	1365	elif [[ "${actionout[$i]}" = trpe ]]
	1366	then
	1367	actionout[$i]=pe
[1]	1368	elif [[ "${actionout[$i]}" = tra ]]
	1369	then
	1370	actionout[$i]=a
	1371	fi
	1372	(( maxcycle = 0 ))
	1373	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1374	eval catalogname=${pathout[$i]}
	1375	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1376	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1377	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1378	then
	1379
	1380	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1381	if cat /dev/null > $filename
	1382	then
	1383	rm $filename
	1384	else
	1385
	1386	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1387	if [[ ! -d $catalogname ]]
	1388	then
	1389	if mkdir -p $catalogname
	1390	then
	1391	printf "\n\n *** directory:"
	1392	printf "\n $catalogname"
	1393	printf "\n was created\n"
	1394	else
	1395	printf "\n\n +++ OUTPUT-file:"
	1396	printf "\n $filename"
	1397	printf "\n cannot be created, because directory does not exist"
	1398	printf "\n and cannot be created either"
	1399	printf "\n"
	1400	locat=output ; exit
	1401	fi 2>/dev/null
	1402	else
	1403	printf "\n\n +++ OUTPUT-file:"
	1404	printf "\n $filename"
	1405	printf "\n cannot be created, although directory exists"
	1406	printf "\n"
	1407	locat=output ; exit
	1408	fi
	1409	fi 2>/dev/null
	1410	else
	1411
	1412	# ZYKLUSNUMMER FESTSTELLEN
	1413	ls -1 -d $filename > filelist 2>/dev/null
	1414	ls -1 -d $filename.* >> filelist 2>/dev/null
	1415	while read zeile
	1416	do
	1417	cycle=$(print $zeile \| cut -f2 -d".")
	1418	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1419	then
	1420	(( icycle = 1 ))
	1421	else
	1422	(( icycle = $cycle + 1 ))
	1423	fi
	1424	if (( icycle > maxcycle ))
	1425	then
	1426	(( maxcycle = icycle ))
	1427	fi
	1428	done <filelist
	1429	rm filelist
	1430	fi
	1431
	1432	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1433	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1434	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1435	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1436	if [[ "${actionout[$i]}" != a ]]
	1437	then
	1438	if (( maxcycle > 0 ))
	1439	then
	1440	filename=${filename}.$maxcycle
	1441	if cat /dev/null > $filename
	1442	then
	1443	rm $filename
	1444	else
	1445	printf "\n +++ OUTPUT-file:"
	1446	printf "\n $filename"
	1447	printf "\n cannot be created"
	1448	locat=output ; exit
	1449	fi
	1450	fi
	1451	else
	1452	(( maxcycle = maxcycle - 1 ))
	1453	if (( maxcycle > 0 ))
	1454	then
	1455	filename=${filename}.$maxcycle
	1456	fi
	1457	fi
	1458
	1459	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1460	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1461	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1462	pathout[$i]=$filename
	1463	if (( maxcycle > 0 ))
	1464	then
	1465	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1466	else
	1467	frelout[$i]=${fname}${endout[$i]}
	1468	fi
	1469
	1470	fi
	1471	done
	1472
	1473
[260]	1474	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1475	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1476	then
[260]	1477	if [[ "$dvr_inc" = "" ]]
[83]	1478	then
[260]	1479	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1480	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1481	locat=dvr; exit
[83]	1482	fi
[260]	1483	if [[ "$dvr_lib" = "" ]]
[83]	1484	then
[260]	1485	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1486	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1487	locat=dvr; exit
[83]	1488	fi
	1489	fi
	1490
	1491
[1]	1492	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1493	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1494	# UEBERSETZT ZU WERDEN)
	1495	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1496	then
	1497	printf "\n +++ neither main program nor executable defined"
	1498	locat=source; exit
	1499	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1500	then
	1501	printf "\n +++ main program as well as executable defined"
	1502	locat=source; exit
	1503	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1504	then
	1505	do_compile=false
	1506	fi
	1507
	1508
[191]	1509	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1510	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1511	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1512	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1513	then
	1514	rm -rf SOURCES_FOR_RUN_$fname
	1515	mkdir SOURCES_FOR_RUN_$fname
	1516	fi
	1517
	1518
[1]	1519	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1520	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1521	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1522	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1523	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1524	then
	1525
[5]	1526	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1527	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1528
	1529
	1530	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1531	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1532	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1533	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1534	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1535	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1536	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1537	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1538	# GESAMMELT
[5]	1539	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1540	then
	1541
	1542	source_list=""
	1543	cd $source_path
	1544
	1545
	1546	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1547	Names=$(ls -1 *.f90 2>&1)
	1548	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1549	Names=$(ls -1 *.F90 2>&1)
	1550	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1551	Names=$(ls -1 *.F 2>&1)
	1552	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1553	Names=$(ls -1 *.f 2>&1)
	1554	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1555	Names=$(ls -1 *.c 2>&1)
	1556	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1557
	1558
	1559	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1560	for dateiname in $Filenames
	1561	do
	1562	if [[ -w $dateiname ]]
	1563	then
	1564	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1565	then
	1566	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1567	source_list=$source_list"$dateiname "
	1568	fi
	1569	fi
	1570	done
	1571
	1572	cd - > /dev/null
	1573
	1574
[5]	1575	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1576	then
	1577
	1578	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1579	source_list=""
	1580	cd $source_path
	1581
	1582
	1583	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1584	if [[ ! -d .svn ]]
	1585	then
	1586	printf "\n\n +++ source directory"
	1587	printf "\n \"$source_path\" "
	1588	printf "\n is not under control of \"subversion\"."
[306]	1589	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1590	fi
	1591
	1592
	1593	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1594	Filenames=""
[69]	1595	svn status > tmp_mrun
	1596	while read line
[5]	1597	do
	1598	firstc=`echo $line \| cut -c1`
	1599	if [[ $firstc = M \|\| $firstc = "?" ]]
	1600	then
	1601	Name=`echo "$line" \| cut -c8-`
	1602	extension=`echo $Name \| cut -d. -f2`
	1603	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1604	then
	1605	Filenames="$Filenames "$Name
	1606	fi
	1607	fi
[69]	1608	done < tmp_mrun
[5]	1609
	1610
	1611	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1612	for dateiname in $Filenames
	1613	do
	1614	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1615	source_list=$source_list"$dateiname "
	1616	done
	1617
	1618	cd - > /dev/null
	1619
	1620
[1]	1621	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1622	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1623	# VORHANDEN
[5]	1624	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1625	then
	1626
	1627	cd $source_path
	1628
	1629	for filename in $source_list
	1630	do
	1631
	1632	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1633	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1634	then
	1635	printf "\n +++ source code file: $filename"
	1636	printf "\n must not contain (\"/\") "
	1637	locat=source; exit
	1638	fi
	1639
	1640	if [[ ! -f $filename ]]
	1641	then
	1642	printf "\n +++ source code file: $filename"
	1643	printf "\n does not exist"
	1644	locat=source; exit
	1645	else
	1646	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1647	fi
	1648
	1649	done
	1650
	1651	cd - > /dev/null
	1652
	1653	fi
	1654
	1655
	1656	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1657	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1658	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1659	if [[ $restart_run != true ]]
[1]	1660	then
	1661
	1662	if [[ ! -f "$source_path/$mainprog" ]]
	1663	then
	1664	printf "\n\n +++ main program: $mainprog"
	1665	printf "\n does not exist in source directory"
	1666	printf "\n \"$source_path\"\n"
	1667	locat=source; exit
	1668	else
	1669	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1670	then
	1671	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1672	source_list=${mainprog}" $source_list"
	1673	fi
	1674	fi
	1675	fi
	1676
	1677
[211]	1678	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1679	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1680	if [[ "$restart_run" != true ]]
	1681	then
	1682	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1683	if [[ ! -f $makefile ]]
	1684	then
	1685	printf "\n +++ file \"$makefile\" does not exist"
	1686	locat=make; exit
	1687	else
	1688	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1689	fi
	1690	fi
	1691
	1692
[1]	1693	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1694	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1695	then
	1696
	1697	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1698	if [[ ! -d $add_source_path ]]
	1699	then
	1700	printf "\n\n +++ WARNING: additional source code directory"
	1701	printf "\n \"$add_source_path\" "
	1702	printf "\n does not exist or is not a directory."
	1703	printf "\n No source code will be used from this directory!\n"
	1704	add_source_path=""
	1705	sleep 3
	1706	else
	1707
	1708	cd $add_source_path
[211]	1709	found=false
[1]	1710
	1711	Names=$(ls -1 *.f90 2>&1)
	1712	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1713	Names=$(ls -1 *.F90 2>&1)
	1714	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1715	Names=$(ls -1 *.F 2>&1)
	1716	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1717	Names=$(ls -1 *.f 2>&1)
	1718	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1719	Names=$(ls -1 *.c 2>&1)
	1720	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1721
	1722	cd - > /dev/null
	1723	cd SOURCES_FOR_RUN_$fname
	1724
[211]	1725	# COPY MAKEFILE IF EXISTING
	1726	if [[ -f $add_source_path/Makefile ]]
	1727	then
	1728	printf "\n\n *** user Makefile from directory"
	1729	printf "\n \"$add_source_path\" is used \n"
	1730	sleep 1
	1731	cp $add_source_path/Makefile .
	1732	fi
	1733
[1]	1734	for dateiname in $AddFilenames
	1735	do
	1736	if [[ -f $dateiname ]]
	1737	then
	1738	printf "\n +++ source code file \"$dateiname\" found in additional"
	1739	printf "\n source code directory \"$add_source_path\" "
[211]	1740	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1741	printf "\n from directory \"$source_path\"."
[1]	1742	locat=source; exit
	1743	fi
	1744
	1745	cp $add_source_path/$dateiname .
	1746	source_list="$source_list $dateiname"
	1747
[211]	1748	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1749	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1750	then
	1751	printf "\n\n +++ user file \"$dateiname\" "
	1752	printf "\n is not listed in Makefile \n"
	1753	locat=source; exit
	1754	else
	1755
[1]	1756	# Default User-Interface von der Liste entfernen, falls Datei
	1757	# ein User-Interface enthaelt
[211]	1758	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1759	# then
	1760	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1761	# then
	1762	# rm -rf user_interface.f90
	1763	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1764	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1765	# printf "\n since a user-interface is found in file"
	1766	# printf "\n \"$add_source_path/$dateiname\" \n"
	1767	# sleep 3
	1768	# else
	1769	if [[ $found = false ]]
[1]	1770	then
[211]	1771	found=true
	1772	printf "\n\n *** following user file(s) added to the"
	1773	printf " files to be translated:\n "
[1]	1774	fi
[211]	1775	printf "$dateiname "
	1776	sleep 0.5
[1]	1777	fi
	1778	done
[211]	1779	[[ $found = true ]] && printf "\n"
[1]	1780	cd - > /dev/null
	1781	fi
	1782	fi
	1783
	1784
	1785	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1786	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1787	if [[ $restart_run != true && -n $package_list ]]
[1]	1788	then
	1789
	1790	cd $source_path
	1791
	1792	for package in $package_list
	1793	do
	1794
	1795	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1796
	1797	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1798	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1799	# LIEFERT
	1800	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1801
	1802
	1803	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1804	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1805	for source_list_name in $package_source_list
	1806	do
	1807	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1808	then
	1809
	1810	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1811	ending=`echo $source_list_name \| cut -f2 -d.`
	1812	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1813	then
	1814	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1815	source_list="$source_list $source_list_name"
	1816	fi
	1817	fi
	1818	done
	1819	done
	1820
	1821	cd - > /dev/null
	1822	fi
	1823
	1824
	1825	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1826	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1827	# if [[ "$restart_run" != true ]]
	1828	# then
	1829	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1830	# if [[ ! -f $makefile ]]
	1831	# then
	1832	# printf "\n +++ file \"$makefile\" does not exist"
	1833	# locat=make; exit
	1834	# else
	1835	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1836	# fi
	1837	# fi
[1]	1838
	1839	fi # do_compile=true
	1840
	1841
	1842	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1843	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1844	if [[ $do_compile = true ]]
	1845	then
	1846
	1847	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1848	# ZUSAMMENSETZEN
[83]	1849	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1850	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1851	then
[82]	1852	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1853	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1854	then
[82]	1855	cpp_options="$cpp_options -D__nec"
	1856	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1857	then
	1858	cpp_options="$cpp_options -D__lc"
[1]	1859	else
[82]	1860	cpp_options="$cpp_options -D__$localhost"
[1]	1861	fi
[83]	1862
	1863	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1864	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1865	then
[82]	1866	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1867	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1868	else
[82]	1869	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1870	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1871	fi
[83]	1872
	1873	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1874	if [[ -n $package_list ]]
	1875	then
	1876	for package in $package_list
	1877	do
	1878	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1879	then
	1880	if [[ $package != "dvrp_graphics+1PE" ]]
	1881	then
[82]	1882	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1883	else
[82]	1884	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1885	export use_seperate_pe_for_dvrp_output=true
	1886	fi
	1887	else
	1888	if [[ $package != "dvrp_graphics+1PE" ]]
	1889	then
[82]	1890	cpp_options="$cpp_options -D__$package"
[1]	1891	else
[82]	1892	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1893	export use_seperate_pe_for_dvrp_output=true
	1894	fi
	1895	fi
	1896	done
	1897	fi
[83]	1898
	1899	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1900	if [[ -n $cpp_opts ]]
	1901	then
	1902	for popts in $cpp_opts
	1903	do
[82]	1904	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1905	then
	1906	cpp_options="${cpp_options},-D__$popts=__$popts"
	1907	else
	1908	cpp_options="$cpp_options -D__$popts"
	1909	fi
[1]	1910	done
	1911	fi
	1912
	1913	else
	1914
	1915
	1916	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1917	if [[ $do_remote = false ]]
	1918	then
	1919	if [[ ! -f $executable ]]
	1920	then
	1921	printf "\n +++ executable file: $executable"
	1922	printf "\n does not exist"
	1923	locat=executable; exit
	1924	fi
	1925	fi
	1926	fi
	1927
	1928
	1929	# JOBMODUS FESTSTELLEN
	1930	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1931	then
	1932	jobmo=BATCH
	1933	else
	1934	jobmo=INTERACTIVE
	1935	fi
	1936
	1937
	1938	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1939	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1940	if [[ "$compiler_name" = "" ]]
	1941	then
[82]	1942
[220]	1943	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1944	locat=compiler_name; exit
	1945
[1]	1946	fi
	1947
	1948
[251]	1949	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1950	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1951
	1952
	1953
	1954	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1955	kennung=$RANDOM
	1956	if [[ "$tmp_user_catalog" = "" ]]
	1957	then
[312]	1958	if [[ $localhost = ibmh ]]
[1]	1959	then
[312]	1960	tmp_user_catalog=$SCRATCH
[1]	1961	elif [[ $localhost = nech ]]
	1962	then
	1963	tmp_user_catalog=$WRKSHR
	1964	else
	1965	tmp_user_catalog=/tmp
	1966	fi
	1967	fi
	1968	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1969
	1970
	1971	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1972	# BESTIMMEN
	1973	if [[ "$tmp_data_catalog" = "" ]]
	1974	then
[312]	1975	if [[ $localhost = ibmb ]]
[1]	1976	then
	1977	tmp_data_catalog=$WORK/mrun_restart_data
	1978	elif [[ $localhost = nech ]]
	1979	then
	1980	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1981	else
	1982	tmp_data_catalog=/tmp/mrun_restart_data
	1983	fi
	1984	fi
	1985
	1986
	1987	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1988	# ERSETZEN
	1989	if [[ $do_remote = false && $do_compile = true ]]
	1990	then
	1991	eval fopts=\"$fopts\"
	1992	eval lopts=\"$lopts\"
	1993	fi
	1994
	1995
	1996
	1997	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1998	fopts="$fopts $netcdf_inc $dvr_inc"
	1999	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	2000	ROPTS="$ropts"
[367]	2001	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	2002	then
	2003	XOPT="-X $numprocs"
	2004	fi
	2005
	2006
	2007
	2008	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2009	# GRAMM BENOETIGT
	2010	done=false
	2011	while [[ $done = false ]]
	2012	do
	2013	cputime=$cpumax
	2014	if (( $cputime == 0 ))
	2015	then
[246]	2016	if [[ $do_batch = true ]]
	2017	then
	2018	printf "\n +++ cpu-time is undefined"
	2019	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2020	printf "\n >>> "
	2021	read cputime 1>/dev/null 2>&1
	2022	else
	2023	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2024	fi
[1]	2025	else
	2026	done=true
	2027	fi
	2028	cpumax=$cputime
	2029	done
	2030
	2031	(( minuten = cputime / 60 ))
	2032	(( sekunden = cputime - minuten * 60 ))
	2033
	2034
	2035	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2036	if [[ $do_batch = true ]]
	2037	then
	2038	done=false
	2039	while [[ $done = false ]]
	2040	do
	2041	if (( memory == 0 ))
	2042	then
	2043	printf "\n +++ memory demand is undefined"
	2044	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2045	printf "\n >>> "
	2046	read memory 1>/dev/null 2>&1
	2047	else
	2048	done=true
	2049	fi
	2050	done
	2051	fi
	2052
	2053
	2054	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2055	if [[ $do_remote = true && -z $remote_username ]]
	2056	then
	2057	while [[ -z $remote_username ]]
	2058	do
	2059	printf "\n +++ username on remote host \"$host\" is undefined"
	2060	printf "\n >>> Please type username:"
	2061	printf "\n >>> "
	2062	read remote_username
	2063	done
	2064	mc="$mc -u$remote_username"
	2065	fi
	2066
[221]	2067
	2068	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2069	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2070	then
	2071	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2072	fi
	2073
	2074
	2075
[1]	2076	###########################################################################
	2077	# HEADER-AUSGABE
	2078	###########################################################################
	2079
	2080
	2081	calltime=$(date)
	2082	printf "\n"
	2083	# [[ $silent = false ]] && clear
	2084	printf "#--------------------------------------------------------------# \n"
	2085	printf "\| $version$calltime \| \n"
	2086	printf "\| \| \n"
	2087	spalte1="called on:"; spalte2=$localhost_realname
	2088	printf "\| $spalte1$spalte2 \| \n"
	2089	if [[ $local_compile = false ]]
	2090	then
	2091	if [[ $do_remote = true ]]
	2092	then
	2093	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2094	else
	2095	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2096	fi
	2097	else
	2098	spalte1="compiling test only!"; spalte2=""
	2099	fi
	2100	printf "\| $spalte1$spalte2 \| \n"
	2101	if [[ -n $numprocs ]]
	2102	then
	2103	spalte1="number of PEs:"; spalte2=$numprocs
	2104	printf "\| $spalte1$spalte2 \| \n"
	2105	fi
	2106	if [[ -n $tasks_per_node ]]
	2107	then
	2108	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2109	printf "\| $spalte1$spalte2 \| \n"
	2110	fi
	2111	if [[ $threads_per_task != 1 ]]
	2112	then
	2113	spalte1="threads per task:"; spalte2="$threads_per_task"
	2114	printf "\| $spalte1$spalte2 \| \n"
	2115	fi
	2116	printf "\| \| \n"
	2117	if [[ $do_compile = true ]]
	2118	then
[82]	2119	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2120	printf "\| $spalte1$spalte2 \| \n"
[82]	2121	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2122	while [[ "$zeile" != "" ]]
	2123	do
	2124	spalte1=""
	2125	spalte2=$zeile
	2126	printf "\| $spalte1$spalte2 \| \n"
	2127	zeile=$(echo "$zeile" \| cut -c41-)
	2128	done
	2129
[82]	2130	spalte1=compiler-options:; spalte2="$fopts"
[1]	2131	printf "\| $spalte1$spalte2 \| \n"
[82]	2132	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2133	while [[ "$zeile" != "" ]]
	2134	do
	2135	spalte1=""
	2136	spalte2=$zeile
	2137	printf "\| $spalte1$spalte2 \| \n"
	2138	zeile=$(echo "$zeile" \| cut -c41-)
	2139	done
	2140
[82]	2141	spalte1=linker-options:; spalte2=$lopts
[1]	2142	printf "\| $spalte1$spalte2 \| \n"
[82]	2143	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2144	while [[ "$zeile" != "" ]]
	2145	do
	2146	spalte1=""
	2147	spalte2=$zeile
	2148	printf "\| $spalte1$spalte2 \| \n"
	2149	zeile=$(echo "$zeile" \| cut -c41-)
	2150	done
	2151
	2152	spalte1="main program":; spalte2=$mainprog
	2153	printf "\| $spalte1$spalte2 \| \n"
	2154	else
	2155	spalte1=executable:; spalte2=$executable
	2156	printf "\| $spalte1$spalte2 \| \n"
	2157	fi
	2158	printf "\| \| \n"
	2159	spalte1="base name of files":; spalte2=$fname
	2160	printf "\| $spalte1$spalte2 \| \n"
	2161	if [[ $fname != $afname ]]
	2162	then
	2163	spalte1="base name of input files":; spalte2=$afname
	2164	printf "\| $spalte1$spalte2 \| \n"
	2165	fi
	2166	spalte1="INPUT control list":; spalte2=$input_list
	2167	printf "\| $spalte1$spalte2 \| \n"
	2168	spalte1="OUTPUT control list":; spalte2=$output_list
	2169	printf "\| $spalte1$spalte2 \| \n"
	2170
	2171	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2172	then
	2173	spalte1="memory demand / PE":; spalte2="$memory MB"
	2174	printf "\| $spalte1$spalte2 \| \n"
	2175	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2176	printf "\| $spalte1$spalte2 \| \n"
	2177	fi
	2178
	2179	if [[ $do_compile = true ]]
	2180	then
	2181	printf "\| \| \n"
	2182	printf "\| Files to be compiled: \| \n"
	2183	zeile=$source_list
	2184	while [[ "$zeile" != "" ]]
	2185	do
	2186	spalte3=$zeile
	2187	printf "\| $spalte3 \| \n"
	2188	zeile=$(echo "$zeile" \| cut -c61-)
	2189	done
	2190	fi
	2191	printf "#--------------------------------------------------------------#"
	2192
	2193
	2194
	2195	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2196	if [[ $do_trace = true ]]
	2197	then
	2198	(( i = 0 ))
	2199	while (( i < iin ))
	2200	do
	2201	(( i = i + 1 ))
	2202	if (( i == 1 ))
	2203	then
	2204	printf "\n\n >>> INPUT-file assignments:\n"
	2205	fi
	2206	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2207	done
	2208	(( i = 0 ))
	2209	while (( i < iout ))
	2210	do
	2211	(( i = i + 1 ))
	2212	if (( i == 1 ))
	2213	then
	2214	printf "\n\n >>> OUTPUT-file assignments:\n"
	2215	fi
	2216	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2217	done
	2218	(( i = 0 ))
	2219	while (( i < iic ))
	2220	do
	2221	(( i = i + 1 ))
	2222	if (( i == 1 ))
	2223	then
	2224	printf "\n\n >>> INPUT-commands:\n"
	2225	fi
	2226	printf "\n ${in_command[$i]}"
	2227	done
	2228	(( i = 0 ))
	2229	while (( i < ioc ))
	2230	do
	2231	(( i = i + 1 ))
	2232	if (( i == 1 ))
	2233	then
	2234	printf "\n\n >>> OUTPUT-commands:\n"
	2235	fi
	2236	printf "\n ${out_command[$i]}"
	2237	done
	2238	fi
	2239
	2240
	2241	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2242	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2243	then
	2244	antwort=dummy
	2245	printf "\n\n"
	2246	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2247	do
	2248	printf " >>> everything o.k. (y/n) ? "
	2249	read antwort
	2250	done
	2251	if [[ $antwort = n \|\| $antwort = N ]]
	2252	then
	2253	locat=user_abort; (( iec = 0 )); exit
	2254	fi
	2255	if [[ $do_batch = true ]]
	2256	then
	2257	printf " >>> batch-job will be created and submitted"
	2258	else
	2259	if [[ $local_compile = false ]]
	2260	then
	2261	printf " >>> MRUN will now continue to execute on this machine"
	2262	else
	2263	printf " >>> a test compilation will now be carried out on this machine"
	2264	fi
	2265	fi
	2266	fi
	2267
	2268
	2269
	2270
	2271	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2272	# CHENDE AKTIONEN DURCHGEFUEHRT
	2273	if [[ $do_batch = false ]]
	2274	then
	2275
	2276
	2277	# TEMPORAEREN KATALOG ERZEUGEN
	2278	mkdir -p $TEMPDIR
	2279	chmod go+rx $TEMPDIR
	2280	tmpcreate=true
	2281
	2282
	2283	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2284	# TEMPORAERES VERZEICHNIS KOPIEREN
	2285	if [[ $do_compile = true ]]
	2286	then
	2287
	2288	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2289	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2290	if [[ $localhost = nech ]]
	2291	then
	2292	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2293	if mkdir -p $TEMPDIR_COMPILE
	2294	then
	2295	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2296	printf "\n is generated as temporary directory for cross compiling\n"
	2297	else
	2298	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2299	printf "\n needed for cross compilation failed"
	2300	locat=compile
	2301	exit
	2302	fi
	2303	else
	2304	TEMPDIR_COMPILE=$TEMPDIR
	2305	fi
	2306
	2307
[82]	2308	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2309	line=""
	2310	grep "%depository_path" $config_file > tmp_mrun
	2311	while read line
	2312	do
	2313	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2314	then
	2315	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2316	then
[82]	2317	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2318	fi
[82]	2319	fi
	2320	done < tmp_mrun
[1]	2321
[82]	2322	line=""
	2323	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2324	while read line
	2325	do
	2326	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2327	then
[211]	2328	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2329	then
	2330	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2331	fi
[1]	2332	fi
[82]	2333	done < tmp_mrun
[1]	2334
[82]	2335	if [[ "$local_depository_path" = "" ]]
	2336	then
	2337	if [[ "$global_depository_path" != "" ]]
[1]	2338	then
[82]	2339	local_depository_path=$global_depository_path
[1]	2340	else
[82]	2341	printf "\n\n +++ no depository path found in configuration file"
	2342	printf "\n for local host \"$localhost\" "
	2343	printf "\n please set \"\%depository_path\" in configuration file\n"
	2344	locat=config_file; exit
[1]	2345	fi
[82]	2346	fi
	2347	eval local_depository_path=$local_depository_path
[215]	2348	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2349	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2350
[215]	2351
[82]	2352	basename=`print $mainprog \| cut -f1 -d"."`
	2353	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2354	if [[ ! -f $make_depository ]]
	2355	then
	2356	printf "\n"
	2357	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2358	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2359	else
	2360	cp $make_depository $TEMPDIR_COMPILE
[1]	2361	cd $TEMPDIR_COMPILE
[82]	2362	tar -xf $make_depository > /dev/null 2>&1
[1]	2363	cd - > /dev/null
	2364	fi
[82]	2365
	2366	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2367
	2368	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2369	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2370	# MAKEFILE EINTRAGEN
[211]	2371	# cd $TEMPDIR_COMPILE
	2372	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2373	# if [[ "$interface_file" != "" ]]
	2374	# then
	2375	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2376	# mv Makefile Makefile_old
	2377	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2378	# fi
	2379	# cd - > /dev/null
[1]	2380	else
	2381	cp $executable ${TEMPDIR}/a.out
	2382	fi
	2383
	2384
	2385	# WECHSEL IN TEMPORAEREN KATALOG
	2386	cd $TEMPDIR
	2387	printf "\n *** changed to temporary directory: $TEMPDIR"
	2388
	2389
	2390	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2391	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2392	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2393	# ERMITTELN
	2394	(( i = 0 ))
	2395	while (( i < iout ))
	2396	do
	2397	(( i = i + 1 ))
	2398	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2399	then
	2400	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2401	else
	2402	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2403	fi
	2404	done
	2405
	2406
	2407	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2408	if [[ $do_compile = true ]]
	2409	then
	2410
	2411
	2412	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2413	printf "\n\n\n *** compilation starts \n$striche\n"
	2414	printf " *** compilation with make using following options:\n"
[211]	2415	printf " make depository: $make_depository"
[82]	2416	printf " compilername: $compiler_name\n"
	2417	printf " options: $fopts\n"
	2418	printf " preprocessor-directives: $cpp_options \n"
	2419	printf " linker-options: $lopts \n"
	2420	printf " source code files: $source_list \n"
	2421
	2422	if [[ $localhost = nech ]]
[1]	2423	then
[82]	2424	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2425	cp $TEMPDIR_COMPILE/a.out .
	2426	[[ $? != 0 ]] && compile_error=true
	2427	rm -rf $TEMPDIR_COMPILE
[312]	2428	elif [[ $localhost = ibmh ]]
	2429	then
[325]	2430	printf " compiler is called via ssh on \"plogin1\" \n"
	2431	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2432	[[ ! -f a.out ]] && compile_error=true
	2433	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2434	elif [[ $localhost = lcsgib ]]
	2435	then
[221]	2436	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[372]	2437	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2438	[[ ! -f a.out ]] && compile_error=true
	2439	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2440	elif [[ $localhost = lcsgih ]]
	2441	then
[221]	2442	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2443	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2444	[[ ! -f a.out ]] && compile_error=true
	2445	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2446	else
[118]	2447	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2448	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2449	fi
[1]	2450
	2451	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2452	then
	2453	printf "\n +++ error occured while compiling or linking"
	2454	locat=compile
[181]	2455
[182]	2456	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2457	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2458	# then
[181]	2459	exit
[197]	2460	# else
	2461	# locat=normal
	2462	# fi
[1]	2463	else
	2464	printf "$striche\n *** compilation finished \n"
	2465	fi
	2466	fi
	2467
	2468
	2469	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2470	if [[ $local_compile = true ]]
	2471	then
	2472	cd $HOME
	2473	rm -rf $TEMPDIR
	2474	locat=local_compile; exit
	2475	fi
	2476
	2477
	2478	# BEREITSTELLEN DER INPUT-DATEIEN
	2479	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2480	(( i = 0 ))
	2481	while (( i < iin ))
	2482	do
	2483	(( i = i + 1 ))
	2484	if (( i == 1 ))
	2485	then
	2486	printf "\n\n *** providing INPUT-files:\n$striche"
	2487	fi
	2488
	2489
	2490	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2491	if [[ "${transin[$i]}" = unavailable ]]
	2492	then
	2493	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2494	then
	2495	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2496	printf "\n is not available!"
	2497	else
	2498	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2499	printf "\n is not available!"
	2500	fi
	2501	continue
	2502	fi
	2503
	2504	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2505	files_for_pes=false; datentyp=file
	2506	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2507	then
	2508	files_for_pes=true; datentyp=directory
	2509	actionin[$i]=""
	2510	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2511	then
	2512	actionin[$i]=""
	2513	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2514	then
	2515	files_for_pes=true; datentyp=directory
	2516	actionin[$i]="ar"
	2517	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2518	then
	2519	actionin[$i]="ar"
	2520	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2521	then
	2522	files_for_pes=true; datentyp=directory
	2523	actionin[$i]="fl"
	2524	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2525	then
	2526	actionin[$i]="fl"
	2527	fi
	2528
	2529	if [[ $files_for_pes = true ]]
	2530	then
	2531	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2532	else
	2533	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2534	fi
	2535
	2536	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2537	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2538	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2539	# SERVER ZU HOLEN
	2540	if [[ "${actionin[$i]}" = fl ]]
	2541	then
	2542	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2543	if [[ $files_for_pes = false ]]
	2544	then
	2545	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2546	then
	2547	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2548	got_tmp[$i]=true
	2549	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2550	then
	2551	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2552	printf "\n *** trying to use backup copy in \"$WORK\" "
	2553	cp $WORK/${frelin[$i]} ${localin[$i]}
	2554	else
	2555	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2556	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2557	printf "\n *** trying to get copy from archive"
	2558	actionin[$i]=ar
	2559	fi
	2560	else
	2561	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2562	then
	2563	mkdir ${localin[$i]}
[149]	2564	cd $tmp_data_catalog/${frelin[$i]}
	2565	for file in $(ls *)
	2566	do
	2567	ln $file $TEMPDIR/${localin[$i]}
	2568	done
	2569	cd $TEMPDIR
[1]	2570	got_tmp[$i]=true
	2571	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2572	then
	2573	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2574	printf "\n *** trying to use backup copy in \"$WORK\" "
	2575	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2576	else
	2577	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2578	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2579	printf "\n *** trying to get copy from archive"
	2580	actionin[$i]=ar
	2581	fi
	2582	fi
	2583	fi
	2584
	2585
	2586	# DATEI LIEGT AUF ARCHIV-SERVER
	2587	if [[ "${actionin[$i]}" = ar ]]
	2588	then
	2589
	2590	if [[ $files_for_pes = false ]]
	2591	then
	2592	printf "\n file will be restored from archive-system ($archive_system)!"
	2593	else
	2594	printf "\n directory will be restored from archive-system ($archive_system)!"
	2595	fi
	2596
	2597	file_restored=false
	2598
	2599	if [[ $archive_system = asterix ]]
	2600	then
	2601	do_stagein=true
	2602	(( stagein_anz = 0 ))
	2603	while [[ $do_stagein = true ]]
	2604	do
	2605	if [[ $files_for_pes = false ]]
	2606	then
	2607	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2608	else
	2609	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2610	fi
	2611	cat STAGEIN_OUTPUT
	2612	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2613	then
	2614	file_restored=true
	2615	do_stagein=false
	2616	else
	2617	(( stagein_anz = stagein_anz + 1 ))
	2618	if (( stagein_anz == 10 ))
	2619	then
	2620	printf "\n +++ stagein stoped after 10 tries"
	2621	locat=stage
	2622	exit
	2623	fi
	2624	printf "\n +++ restoring from archive failed, trying again:"
	2625	sleep 900
	2626	fi
	2627	done
	2628	elif [[ $archive_system = DMF ]]
	2629	then
	2630	if [[ $files_for_pes = false ]]
	2631	then
	2632	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2633	locat=DMF
	2634	exit
	2635	else
	2636	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2637	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2638	file_restored=true
	2639	fi
	2640	elif [[ $archive_system = tivoli ]]
	2641	then
	2642	if [[ $files_for_pes = false ]]
	2643	then
[399]	2644	if [[ $localhost = lcsgih ]]
[1]	2645	then
[399]	2646	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2647	else
[399]	2648	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
[1]	2649	fi
	2650	else
	2651	(( inode = 0 ))
	2652	while (( inode < nodes ))
	2653	do
[399]	2654	if [[ $localhost = lcsgih ]]
[1]	2655	then
[399]	2656	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2657	else
[399]	2658	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
[1]	2659	fi
	2660	(( inode = inode + 1 ))
	2661	done
	2662	fi
	2663	file_restored=true
	2664	elif [[ $archive_system = ut ]]
	2665	then
	2666	if [[ $files_for_pes = false ]]
	2667	then
	2668	cp $UT/${frelin[$i]} .
	2669	else
	2670	(( inode = 0 ))
	2671	while (( inode < nodes ))
	2672	do
	2673	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2674	(( inode = inode + 1 ))
	2675	done
	2676	fi
	2677	file_restored=true
	2678	else
	2679	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2680	locat=rearchive
	2681	exit
	2682	fi
	2683
	2684	if [[ $file_restored = true ]]
	2685	then
	2686
	2687	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2688	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2689	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2690	if [[ $files_for_pes = false ]]
	2691	then
	2692	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2693	else
	2694	mkdir $tmp_data_catalog/${frelin[$i]}
	2695	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2696	fi
	2697	got_tmp[$i]=true
	2698
	2699	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2700	mv ${frelin[$i]} ${localin[$i]}
	2701
	2702	fi
	2703	fi
	2704
	2705
	2706	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2707	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2708	then
	2709
	2710	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2711	then
	2712
	2713	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2714	printf "\n file will be provided for $numprocs processors"
	2715	mkdir ${localin[$i]}
	2716	ival=$numprocs
	2717	(( ii = 0 ))
	2718	while (( ii <= ival-1 ))
	2719	do
	2720	if (( ii < 10 ))
	2721	then
	2722	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2723	elif (( ii < 100 ))
	2724	then
	2725	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2726	elif (( ii < 1000 ))
	2727	then
	2728	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2729	else
	2730	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2731	fi
	2732	(( ii = ii + 1 ))
	2733	done
	2734
	2735	else
	2736
	2737	if [[ $files_for_pes = true ]]
	2738	then
	2739
	2740	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2741	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2742	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2743	# PER MOVE UMBENANNT WERDEN
	2744	printf "\n providing $numprocs files for the respective processors"
	2745	mkdir ${localin[$i]}
[183]	2746	if [[ $link_local_input = true ]]
	2747	then
	2748	printf " using ln -f\n"
	2749	cd ${absnamein[$i]}
	2750	for file in $(ls *)
	2751	do
	2752	ln -f $file ${localin[$i]}
	2753	done
	2754	cd $TEMPDIR
	2755	fi
	2756	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2757	if [[ ! -f "${localin[$i]}/_0000" ]]
	2758	then
	2759	if [[ $link_local_input = true ]]
	2760	then
	2761	printf " ln failed for .../_0000, using cp...\n"
	2762	fi
	2763	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2764	fi
[1]	2765
	2766	else
	2767	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2768	if [[ $link_local_input = true ]]
	2769	then
	2770	printf " using ln -f\n"
	2771	ln -f ${absnamein[$i]} ${localin[$i]}
	2772	fi
	2773	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2774	if [[ ! -f "${localin[$i]}" ]]
	2775	then
	2776	if [[ $link_local_input = true ]]
	2777	then
	2778	printf " ln failed, using cp...\n"
	2779	fi
	2780	cp ${absnamein[$i]} ${localin[$i]}
	2781	fi
[1]	2782	fi
	2783	fi
	2784	fi
	2785
	2786	done
	2787	if (( i != 0 ))
	2788	then
	2789	printf "\n$striche\n *** all INPUT-files provided \n"
	2790	fi
	2791
	2792
	2793	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2794	(( i = 0 ))
	2795	while (( i < iic ))
	2796	do
	2797	(( i = i + 1 ))
	2798	if (( i == 1 ))
	2799	then
	2800	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2801	fi
	2802	printf "\n >>> ${in_command[$i]}"
	2803	eval ${in_command[$i]}
	2804	if (( i == iic ))
	2805	then
	2806	printf "\n$striche\n"
	2807	fi
	2808	done
	2809
	2810
	2811	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2812	cpurest=${cpumax}.
	2813
	2814
[260]	2815	# START DVR STREAMING SERVER
	2816	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2817	then
	2818	if [[ "$dvr_server" != "" ]]
	2819	then
	2820
	2821	printf "\n\n *** preparing the dvr streaming server configuration file"
	2822
	2823	# Check, if a dvr server is already running
	2824	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2825	if [[ "$running_dvrserver_id" != "" ]]
	2826	then
	2827
[261]	2828	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2829	printf "\n This server is used instead starting a new one!"
[261]	2830	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2831
	2832	else
	2833
	2834	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2835	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2836	then
	2837	cp ${PALM_BIN}/.dvrserver.config .
	2838
	2839	# Entering the BASEDIR, UID and GID into this file
	2840	user_id=`id -u`
	2841	group_id=`id -g`
	2842	# & is needed as seperator, because TEMPDIR contains /
	2843	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2844	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2845	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2846	mv .dvrserver.3 .dvrserver.config
	2847	rm .dvrserver.1 .dvrserver.2
	2848
	2849	# Start dvr server in background, get his id and print on terminal
	2850	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2851	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2852	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2853	local_dvrserver_running=.TRUE.
	2854	else
	2855	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2856	printf "\n \"$PALM_BIN\" "
	2857	locat=dvr
	2858	exit
	2859	fi
	2860
	2861	fi
	2862
	2863	else
	2864	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2865	fi
	2866	fi
	2867
	2868
	2869	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2870	# LESEN VON PALM)
	2871	cat > ENVPAR << %%END%%
	2872	&envpar run_identifier = '$fname', host = '$localhost',
	2873	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2874	maximum_cpu_time_allowed = ${cpumax}.,
	2875	revision = '$global_revision',
	2876	local_dvrserver_running = $local_dvrserver_running /
	2877
	2878	%%END%%
	2879
	2880
[1]	2881	# PROGRAMMSTART
	2882	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2883	PATH=$PATH:$TEMPDIR
	2884
[359]	2885	# MPI debug option (argument checking, slows down execution due to increased latency)
	2886	if [[ "$mpi_debug" = true ]]
	2887	then
	2888	export MPI_CHECK_ARGS=1
	2889	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2890	fi
	2891
[1]	2892	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2893	then
	2894	if [[ "$ENVIRONMENT" = BATCH ]]
	2895	then
[211]	2896	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2897	then
	2898	printf "\n +++ debug is allowed in interactive mode only"
	2899	locat=debug
	2900	exit
	2901	fi
[1]	2902	fi
[5]	2903	if [[ $localhost = decalpha ]]
[1]	2904	then
	2905	dxladebug a.out
	2906	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2907	then
	2908
	2909	# SETUP THE IBM MPI ENVIRONMENT
	2910	export MP_SHARED_MEMORY=yes
	2911	export AIXTHREADS_SCOPE=S
	2912	export OMP_NUM_THREADS=$threads_per_task
	2913	export AUTHSTATE=files
	2914	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2915
	2916	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2917	export MP_ADAPTER_USE=shared
	2918	export MP_CPU_USE=multiple
	2919	export MP_TIMEOUT=1200
	2920
	2921	unset MP_TASK_AFFINITY
	2922
	2923	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2924	#(( ii = 1 ))
	2925	#while (( ii <= $numprocs ))
	2926	#do
	2927	# echo $localhost_realname >> hostfile
	2928	# (( ii = ii + 1 ))
	2929	#done
	2930	#export MP_HOSTFILE=hostfile
	2931
	2932	if [[ "$LOADLBATCH" = yes ]]
	2933	then
	2934	totalview poe a.out $ROPTS
	2935	else
	2936	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2937	export TVDSVRLAUNCHCMD=ssh
	2938	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2939	fi
[211]	2940	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2941	then
	2942	# CURRENTLY NO DEBUGGER ON LCSGI
	2943	if [[ $run_coupled_model = true ]]
	2944	then
	2945	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2946	locat=debug
	2947	exit
[223]	2948	else
	2949	echo "no_coupling" > runfile_atmos
[211]	2950	fi
	2951	(( ii = $numprocs / $threads_per_task ))
	2952	export OMP_NUM_THREADS=$threads_per_task
	2953	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2954	if [[ $threads_per_task != 1 ]]
	2955	then
	2956	printf "\n threads per task: $threads_per_task"
	2957	fi
	2958	printf "\n\n"
[223]	2959	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2960	then
	2961	# export MPI_LAUNCH_TIMEOUT=360
	2962	if [[ "$totalview" = true ]]
	2963	then
	2964	printf "\n running totalview debugger"
	2965	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2966	else
	2967	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2968	fi
	2969	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2970	then
	2971	# ulimit -s 300000 # A too large stack size causes problems
	2972	# export MV2_NUM_PORTS=2
	2973	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2974	if [[ "$totalview" = true ]]
	2975	then
	2976	printf "\n running totalview debugger"
	2977	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2978	else
	2979	mpiexec ./a.out $ROPTS < runfile_atmos
	2980	fi
[223]	2981	fi
[1]	2982	else
	2983	printf "\n +++ no debug available on \"$localhost\" "
	2984	printf "\n or not implemented in mrun so far"
	2985	locat=debug
	2986	exit
	2987	fi
	2988	else
	2989	if [[ -n $numprocs ]]
	2990	then
	2991	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2992	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2993	then
	2994	# SETUP THE IBM MPI ENVIRONMENT
[312]	2995	if [[ $host != ibmh ]]
	2996	then
	2997	export MP_SHARED_MEMORY=yes
	2998	export AIXTHREAD_SCOPE=S
	2999	export OMP_NUM_THREADS=$threads_per_task
	3000	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	3001	export AUTHSTATE=files
	3002	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3003	# export MP_PRINTENV=yes
[1]	3004
[312]	3005	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3006	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3007	export MP_WAIT_MODE=poll
	3008	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3009	fi
[1]	3010	if [[ "$LOADLBATCH" = yes ]]
	3011	then
	3012	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3013	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3014	then
[102]	3015	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3016	else
[343]	3017	if [[ $run_coupled_model = false ]]
	3018	then
	3019	if [[ "$ocean_file_appendix" = true ]]
	3020	then
	3021	echo "precursor_ocean" > runfile_atmos
	3022	else
	3023	echo "precursor_atmos" > runfile_atmos
	3024	fi
	3025	else
	3026	(( iia = $numprocs_atmos / $threads_per_task ))
	3027	(( iio = $numprocs_ocean / $threads_per_task ))
	3028	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3029	printf "\n using $coupled_mode coupling"
	3030	printf "\n\n"
	3031	echo "coupled_run $iia $iio" > runfile_atmos
	3032	fi
	3033	poe ./a.out $ROPTS < runfile_atmos
[1]	3034	fi
	3035	else
	3036	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3037	then
[102]	3038	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3039	elif [[ $localhost = ibmy ]]
	3040	then
	3041	if [[ -f $hostfile ]]
	3042	then
	3043	cp $hostfile hostfile
	3044	else
	3045	(( ii = 1 ))
	3046	while (( ii <= $numprocs ))
	3047	do
	3048	echo $localhost_realname >> hostfile
	3049	(( ii = ii + 1 ))
	3050	done
	3051	fi
	3052	export MP_HOSTFILE=hostfile
[331]	3053	if [[ $run_coupled_model = false ]]
	3054	then
	3055	if [[ "$ocean_file_appendix" = true ]]
	3056	then
	3057	echo "precursor_ocean" > runfile_atmos
	3058	else
	3059	echo "precursor_atmos" > runfile_atmos
	3060	fi
	3061	else
	3062	(( iia = $numprocs_atmos / $threads_per_task ))
	3063	(( iio = $numprocs_ocean / $threads_per_task ))
	3064	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3065	printf "\n using $coupled_mode coupling"
	3066	printf "\n\n"
	3067	echo "coupled_run $iia $iio" > runfile_atmos
	3068	fi
	3069	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3070
[1]	3071	else
	3072	if [[ "$host_file" = "" ]]
	3073	then
	3074	printf "\n +++ no hostfile given in configuration file"
	3075	locat=config_file
	3076	exit
	3077	else
	3078	eval host_file=$host_file
	3079	fi
	3080	export MP_HOSTFILE=$host_file
[102]	3081	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3082	fi
	3083	fi
[251]	3084	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3085	then
	3086	(( ii = nodes ))
	3087	if [[ $ii = 1 ]]
	3088	then
	3089	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3090	export MPIPROGINF=YES
[61]	3091	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3092	echo "*** execution on single node with mpirun"
[102]	3093	mpirun -np $numprocs ./a.out $ROPTS
[1]	3094	else
	3095	(( i = 0 ))
	3096	while (( i < ii ))
	3097	do
	3098	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3099	(( i = i + 1 ))
	3100	done
	3101
	3102	echo "#!/bin/sh" > mpi_exec_shell
	3103	echo " " >> mpi_exec_shell
	3104	echo "set -u" >> mpi_exec_shell
	3105	echo "F_ERRCNT=0" >> mpi_exec_shell
	3106	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3107	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3108	echo "cpurest=$cpurest" >> mpi_exec_shell
	3109	echo "fname=$fname" >> mpi_exec_shell
	3110	echo "localhost=$localhost" >> mpi_exec_shell
	3111	echo "return_addres=$return_addres" >> mpi_exec_shell
	3112	echo "return_username=$return_username" >> mpi_exec_shell
	3113	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3114	echo "write_binary=$write_binary" >> mpi_exec_shell
	3115	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3116	echo " " >> mpi_exec_shell
	3117	echo "export F_ERRCNT" >> mpi_exec_shell
	3118	echo "export MPIPROGINV" >> mpi_exec_shell
	3119	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3120	echo "export cpurest" >> mpi_exec_shell
	3121	echo "export fname" >> mpi_exec_shell
	3122	echo "export localhost" >> mpi_exec_shell
	3123	echo "export return_addres" >> mpi_exec_shell
	3124	echo "export return_username" >> mpi_exec_shell
	3125	echo "export tasks_per_node" >> mpi_exec_shell
	3126	echo "export write_binary" >> mpi_exec_shell
	3127	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3128	echo " " >> mpi_exec_shell
[102]	3129	echo "exec ./a.out" >> mpi_exec_shell
[1]	3130
	3131	chmod u+x mpi_exec_shell
	3132	export MPIPROGINF=YES
	3133	mpirun -f multinode_config &
	3134	wait
	3135
	3136	fi
[82]	3137	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3138	then
	3139
	3140	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3141	# DOES NOT EXIST
[179]	3142	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3143	then
[179]	3144	if [[ -f $hostfile ]]
	3145	then
	3146	cp $hostfile hostfile
	3147	else
	3148	(( ii = 1 ))
	3149	while (( ii <= $numprocs / $threads_per_task ))
	3150	do
	3151	echo $localhost_realname >> hostfile
	3152	(( ii = ii + 1 ))
	3153	done
	3154	fi
	3155	eval zeile=\"`head -n $ii hostfile`\"
	3156	printf "\n *** running on: $zeile"
[1]	3157	fi
[179]	3158
[1]	3159	(( ii = $numprocs / $threads_per_task ))
	3160	export OMP_NUM_THREADS=$threads_per_task
[246]	3161	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3162	if [[ $threads_per_task != 1 ]]
	3163	then
[405]	3164	# increase stack size to unlimited, because large runs
	3165	# may abort otherwise
	3166	ulimit -Ss unlimited
	3167	printf "\n threads per task: $threads_per_task stacksize: unlimited"
[1]	3168	fi
[102]	3169	if [[ $run_coupled_model = false ]]
[1]	3170	then
[291]	3171	if [[ "$ocean_file_appendix" = true ]]
	3172	then
	3173	echo "precursor_ocean" > runfile_atmos
	3174	else
	3175	echo "precursor_atmos" > runfile_atmos
	3176	fi
[102]	3177	printf "\n\n"
[179]	3178	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3179	then
[221]	3180	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3181	then
[366]	3182	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3183	# export MPI_DSM_DISTRIBUTE=1
	3184	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3185	if [[ $use_openmp = false ]]
	3186	then
	3187	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3188	fi
[366]	3189	# MPI_IB_RAILS: use both IB rails on ICE2
	3190	export MPI_BUFS_PER_HOST=512
	3191	export MPI_IB_RAILS=2
[369]	3192	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3193	export MPI_CONNECTIONS_THRESHOLD=8192
[223]	3194	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3195
	3196	# next is test for openmp usage
	3197	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3198	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3199	then
[374]	3200	export MV2_NUM_PORTS=2
[376]	3201	# The default setting of MV2_CPU_MAPPING gives best results
[405]	3202	# export MV2_ENABLE_AFFINITY=1
[376]	3203	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[405]	3204	if [[ $threads_per_task != 1 ]]
	3205	then
	3206	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
	3207	else
	3208	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
	3209	fi
[221]	3210	fi
[179]	3211	elif [[ $host = lcxt4 ]]
	3212	then
[223]	3213	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3214	else
[223]	3215	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3216	fi
[1]	3217	else
[164]	3218
[206]	3219	# currently there is no full MPI-2 support on ICE and XT4
	3220	(( iia = $numprocs_atmos / $threads_per_task ))
	3221	(( iio = $numprocs_ocean / $threads_per_task ))
	3222	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3223	printf "\n using $coupled_mode coupling"
[102]	3224	printf "\n\n"
[164]	3225
[206]	3226	if [[ $coupled_mode = "mpi2" ]]
[164]	3227	then
[206]	3228	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3229	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3230	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3231	then
[197]	3232
[221]	3233	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3234	then
	3235	# export MPI_LAUNCH_TIMEOUT=360
	3236	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3237	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3238	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3239	then
	3240	# ulimit -s 300000 # A too large stack size causes problems
	3241	# export MV2_NUM_PORTS=2
	3242	# export MV2_CPU_MAPPING=0:1:2:3
	3243	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3244	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3245	fi
[197]	3246
[206]	3247	elif [[ $host = lcxt4 ]]
	3248	then
[197]	3249
[206]	3250	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3251	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3252
	3253	else
	3254	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3255	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3256	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3257	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3258	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3259	fi
	3260	wait
	3261
[164]	3262	else
	3263
[206]	3264	echo "coupled_run $iia $iio" > runfile_atmos
	3265	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3266	then
	3267
[221]	3268	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3269	then
	3270	# export MPI_LAUNCH_TIMEOUT=360
	3271	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3272	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3273	then
	3274	# ulimit -s 300000 # A too large stack size causes problems
	3275	# export MV2_NUM_PORTS=2
	3276	# export MV2_CPU_MAPPING=0:1:2:3
	3277	mpiexec ./a.out $ROPTS < runfile_atmos
	3278	fi
[206]	3279
	3280	elif [[ $host = lcxt4 ]]
	3281	then
	3282
	3283	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3284
[367]	3285	elif [[ $host = lck ]]
	3286	then
	3287	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3288	fi
	3289	wait
[164]	3290	fi
[102]	3291
	3292	# if [[ $scirocco = true ]]
	3293	# then
	3294	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3295	# else
	3296	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3297	# fi
[206]	3298	fi
[1]	3299	elif [[ $host = decalpha ]]
	3300	then
[102]	3301	dmpirun -np $numprocs a.out $ROPTS
[1]	3302	elif [[ $host = lctit ]]
	3303	then
	3304	export runfile=runfile.$kennung
	3305
	3306	echo "cd $PWD" > $runfile
	3307	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3308	echo "export cpurest=$cpurest" >> $runfile
	3309	echo "export fname=$fname" >> $runfile
	3310	echo "export localhost=$localhost" >> $runfile
	3311	echo "export return_addres=$return_addres" >> $runfile
	3312	echo "export return_username=$return_username" >> $runfile
	3313	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3314	echo "export write_binary=$write_binary" >> $runfile
	3315	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3316	echo "./a.out" >> $runfile
	3317	chmod u+x $runfile
	3318
	3319	if [[ "$QUEUE" = interactive ]]
	3320	then
[102]	3321	mpirun -np $numprocs a.out $ROPTS
[1]	3322	else
[127]	3323	(( mem_tsubame = $memory / 1024.0 ))
	3324	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3325	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3326	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3327	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3328	fi
	3329
	3330	rm $runfile
	3331	else
[102]	3332	mpprun -n $numprocs a.out $ROPTS
[1]	3333	fi
	3334	[[ $? != 0 ]] && execution_error=true
	3335
	3336
	3337	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3338	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3339	then
	3340	apprentice
	3341	fi
	3342	else
[102]	3343	a.out $ROPTS
[1]	3344	fi
	3345	fi
	3346	if [[ $? != 0 \|\| $execution_error = true ]]
	3347	then
	3348
	3349	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3350	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3351	printf "\n +++ runtime error occured"
	3352	locat=execution
	3353	exit
	3354	else
[102]	3355	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3356	printf "\n$striche\n *** execution finished \n"
[260]	3357
[261]	3358	# Stop the dvr streaming server and process the dvr output in order
	3359	# to create dvrs- and html-files containing all streams
[260]	3360	if [[ "$dvrserver_id" != "" ]]
	3361	then
	3362	kill $dvrserver_id
	3363	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3364
[262]	3365	# If there is a directory, data have been output by the
	3366	# streaming server. Otherwise, user has chosen dvrp_output=local
	3367	if [[ -d DATA_DVR ]]
	3368	then
[261]	3369
[262]	3370	# Add the current dvr configuration file to the dvr output
	3371	# directory
	3372	cp .dvrserver.config DATA_DVR
	3373
	3374	# Process the dvr output (option -s for also generating
	3375	# sequence mode data)
	3376	process_dvr_output -d DATA_DVR -f $fname -s
	3377
	3378	else
	3379
	3380	# Process the local output
	3381	process_dvr_output -l -d DATA_DVR -f $fname
	3382
	3383	fi
	3384
	3385	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3386	then
	3387
	3388	# Process dvr output generated in local mode (dvrp_output=local)
	3389	process_dvr_output -l -d DATA_DVR -f $fname
	3390
[260]	3391	fi
[1]	3392	fi
	3393
	3394
	3395
	3396	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3397	(( i = 0 ))
	3398	while (( i < ioc ))
	3399	do
	3400	(( i = i + 1 ))
	3401	if (( i == 1 ))
	3402	then
	3403	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3404	fi
	3405	printf "\n >>> ${out_command[$i]}"
	3406	eval ${out_command[$i]}
	3407	if (( i == ioc ))
	3408	then
	3409	printf "\n$striche\n"
	3410	fi
	3411	done
	3412
	3413
	3414	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3415	if [[ $do_trace = true ]]
	3416	then
	3417	printf "\n\n"
	3418	ls -al
	3419	fi
	3420
	3421
	3422
	3423	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3424	(( i = 0 ))
	3425	while (( i < iout ))
	3426	do
	3427	(( i = i + 1 ))
	3428	if (( i == 1 ))
	3429	then
	3430	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3431	fi
	3432
	3433	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3434	files_for_pes=false; filetyp=file
	3435	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3436	then
	3437	files_for_pes=true; filetyp=directory
	3438	actionout[$i]=""
	3439	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3440	then
	3441	actionout[$i]=""
	3442	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3443	then
	3444	files_for_pes=true; filetyp=directory
	3445	actionout[$i]="ar"
	3446	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3447	then
	3448	actionout[$i]="ar"
	3449	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3450	then
	3451	files_for_pes=true; filetyp=directory
	3452	actionout[$i]="fl"
	3453	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3454	then
	3455	actionout[$i]="fl"
	3456	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3457	then
	3458	files_for_pes=true; filetyp=directory
	3459	actionout[$i]="tr"
	3460	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3461	then
	3462	actionout[$i]="tr"
	3463	fi
	3464
	3465	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3466	then
	3467	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3468	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3469	then
	3470	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3471	else
	3472
	3473
	3474	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3475	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3476	# REMOTE-RECHNUNGEN
	3477	if [[ "${actionout[$i]}" = tr ]]
	3478	then
	3479	if [[ $localhost != $fromhost ]]
	3480	then
	3481	if [[ $files_for_pes = false ]]
	3482	then
	3483	cps=""
	3484	cst=""
	3485	else
	3486	cps=-c
	3487	cst="/"
	3488	fi
[325]	3489	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3490	then
	3491
	3492	# TRANSFER IN EIGENSTAENDIGEM JOB
	3493	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3494	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3495	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3496	if [[ $files_for_pes = false ]]
	3497	then
	3498	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3499	else
	3500	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3501	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3502	fi
	3503
	3504	echo "set -x" > transfer_${localout[$i]}
	3505	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3506
	3507	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3508	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3509	printf "\n or higher cycle\n"
	3510	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3511
[1]	3512	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3513
	3514	if [[ $localhost = nech ]]
	3515	then
[82]	3516	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3517	else
	3518	if [[ "$LOGNAME" = b323013 ]]
	3519	then
[164]	3520	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3521	else
[164]	3522	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3523	fi
	3524	fi
	3525
	3526	else
	3527
	3528	# TRANSFER INNERHALB DIESES JOBS
	3529	transfer_failed=false
[82]	3530	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3531	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3532	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3533	[[ $? != 0 ]] && transfer_failed=true
[1]	3534
	3535	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3536	# LOKALER MASCHINE ANLEGEN
	3537	if [[ $transfer_failed = true ]]
	3538	then
	3539	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3540	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3541
	3542	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3543	# ANLEGEN.
	3544	eval local_catalog=${pathout[$i]}
	3545	if [[ ! -d $local_catalog ]]
	3546	then
	3547	printf " *** local directory does not exist. Trying to create:\n"
	3548	printf " $local_catalog \n"
	3549	mkdir -p $local_catalog
	3550	fi
	3551	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3552	transfer_problems=true
	3553	fi
	3554	fi
	3555	else
	3556
	3557	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3558	actionout[$i]=""
	3559	fi
	3560	fi
	3561
	3562
	3563	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3564	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3565	# REMOTE-RECHNUNGEN
	3566	if [[ "${actionout[$i]}" = tra ]]
	3567	then
	3568	if [[ $localhost != $fromhost ]]
	3569	then
	3570	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3571	then
	3572
	3573	# TRANSFER IN EIGENSTAENDIGEM JOB
	3574	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3575	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3576	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3577	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3578
	3579	echo "set -x" > transfer_${localout[$i]}
	3580	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3581
	3582	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3583	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3584	printf "\n or higher cycle\n"
	3585	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3586
[1]	3587	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3588
	3589	if [[ $localhost = nech ]]
	3590	then
[82]	3591	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3592	else
	3593	if [[ $LOGNAME = b323013 ]]
	3594	then
[164]	3595	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3596	else
[164]	3597	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3598	fi
	3599	fi
	3600
	3601	else
	3602
	3603	# TRANSFER INNERHALB DIESES JOBS
	3604	transfer_failed=false
[82]	3605	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3606	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3607	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3608	[[ $? != 0 ]] && transfer_failed=true
[1]	3609
	3610	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3611	# LOKALER MASCHINE ANLEGEN
	3612	if [[ $transfer_failed = true ]]
	3613	then
	3614	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3615	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3616
	3617	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3618	# ANLEGEN
	3619	eval local_catalog=${pathout[$i]}
	3620	if [[ ! -d $local_catalog ]]
	3621	then
	3622	printf " *** local directory does not exist. Trying to create:\n"
	3623	printf " $local_catalog \n"
	3624	mkdir -p $local_catalog
	3625	fi
	3626
	3627	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3628	transfer_problems=true
	3629	fi
	3630	fi
	3631	else
	3632
	3633	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3634	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3635	actionout[$i]=a
	3636	fi
	3637	fi
	3638
	3639
	3640	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3641	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3642	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3643	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3644	if [[ "${actionout[$i]}" = fl ]]
	3645	then
	3646	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3647	chmod g+rx $tmp_data_catalog
	3648	if [[ $files_for_pes = false ]]
	3649	then
	3650	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3651	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3652	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3653	else
	3654	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3655	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3656	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3657	cd ${localout[$i]}
	3658	for file in $(ls *)
	3659	do
	3660	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3661	done
	3662	cd $TEMPDIR
[1]	3663	fi
	3664
	3665
	3666	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3667	if [[ $store_on_archive_system = true ]]
	3668	then
	3669
	3670	if [[ $archive_system = asterix ]]
	3671	then
	3672	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3673	if [[ $files_for_pes = false ]]
	3674	then
	3675	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3676	else
	3677	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3678	fi
	3679	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3680	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3681	echo "then" >> archive_${frelout[$i]}
	3682	echo " do_stageout=false" >> archive_${frelout[$i]}
	3683	echo "else" >> archive_${frelout[$i]}
	3684	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3685	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3686	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3687	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3688	if [[ $files_for_pes = false ]]
	3689	then
	3690	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3691	else
	3692	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3693	fi
	3694	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3695	echo "fi" >> archive_${frelout[$i]}
	3696	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3697	elif [[ $archive_system = DMF ]]
	3698	then
	3699	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3700	if [[ $files_for_pes = false ]]
	3701	then
	3702	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3703	locat=DMF
	3704	exit
	3705	else
	3706	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3707	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3708	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3709	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3710	fi
	3711	elif [[ $archive_system = tivoli ]]
	3712	then
	3713	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3714	if [[ $files_for_pes = false ]]
	3715	then
	3716	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3717	echo "set -x" >> archive_${frelout[$i]}
	3718	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3719	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3720	else
	3721
	3722	echo "set -x" >> archive_${frelout[$i]}
	3723	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3724	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3725	cd $tmp_data_catalog
	3726	all_files=`ls -1 ${frelout[$i]}/*`
	3727	cd - > /dev/null
	3728	(( inode = 0 ))
	3729	(( tp1 = tasks_per_node + 1 ))
	3730	while (( inode < nodes ))
	3731	do
	3732	# echo "*** all_files = \"$all_files\" "
	3733	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3734	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3735	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3736	# echo "*** files = \"$files\" "
	3737	# echo "*** all_files = \"$all_files\" "
	3738	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
[397]	3739	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3740	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
[1]	3741	(( inode = inode + 1 ))
	3742	done
	3743	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3744	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3745	fi
	3746	elif [[ $archive_system = ut ]]
	3747	then
	3748	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3749	if [[ $files_for_pes = false ]]
	3750	then
	3751	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3752	echo "set -x" >> archive_${frelout[$i]}
	3753	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3754	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3755	else
	3756
	3757	echo "set -x" >> archive_${frelout[$i]}
	3758	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3759	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3760	cd $tmp_data_catalog
	3761	all_files=`ls -1 ${frelout[$i]}/*`
	3762	cd - > /dev/null
	3763	(( inode = 0 ))
	3764	(( tp1 = tasks_per_node + 1 ))
	3765	while (( inode < nodes ))
	3766	do
	3767	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3768	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3769	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3770	(( inode = inode + 1 ))
	3771	done
	3772	fi
	3773	elif [[ $archive_system = none ]]
	3774	then
	3775	printf " +++ archiving on $localhost not available!\n"
	3776	fi
	3777
	3778	if [[ $archive_system != none ]]
	3779	then
[399]	3780	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
[1]	3781	then
[164]	3782	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[399]	3783	subjob -v -q dataq -X 1 -T 1 -m 1000 -t 10800 -c $job_catalog archive_${frelout[$i]}
[1]	3784	elif [[ $localhost = nech ]]
	3785	then
[82]	3786	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3787	fi
	3788	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3789	fi
	3790	else
[399]	3791	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
[1]	3792	fi
	3793
	3794
	3795	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3796	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3797	if [[ $files_for_pes = false ]]
	3798	then
	3799	cat /dev/null > ${pathout[$i]}
	3800	else
	3801	mkdir -p ${pathout[$i]}
	3802	fi
	3803
	3804	fi
	3805
	3806
	3807	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3808	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3809	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3810	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3811	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3812	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3813	if [[ "${actionout[$i]}" = ar ]]
	3814	then
	3815	if [[ $files_for_pes = false ]]
	3816	then
	3817	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3818	printf "\n ${pathout[$i]}"
	3819	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3820	else
	3821	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3822	printf "\n ${pathout[$i]}"
	3823	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3824	fi
	3825	mv ${localout[$i]} ${frelout[$i]}
	3826
	3827	file_saved=false
	3828
	3829	if [[ $archive_system = asterix ]]
	3830	then
	3831	do_stageout=true
	3832	(( stageout_anz = 0 ))
	3833	while [[ $do_stageout = true ]]
	3834	do
	3835	if [[ $files_for_pes = false ]]
	3836	then
	3837	stageout ${frelout[$i]} > STAGE_OUTPUT
	3838	else
	3839	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3840	fi
	3841	cat STAGE_OUTPUT
	3842	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3843	then
	3844	file_saved=true
	3845	do_stageout=false
	3846	else
	3847	if [[ $files_for_pes = false ]]
	3848	then
	3849	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3850	else
	3851	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3852	fi
	3853	(( stageout_anz = stageout_anz + 1 ))
	3854	if (( stageout_anz == 10 ))
	3855	then
	3856	printf "\n +++ stoped after 10 unsuccessful tries!"
	3857	archive_save=false
	3858	do_stageout=false
	3859	else
	3860	printf "\n *** new try to store on archive after 15 min:"
	3861	sleep 900
	3862	fi
	3863	fi
	3864	done
	3865	elif [[ $archive_system = DMF ]]
	3866	then
	3867	if [[ $files_for_pes = false ]]
	3868	then
	3869	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3870	locat=DMF
	3871	exit
	3872	else
	3873	rm -rf $ARCHIVE/${frelout[$i]}
	3874	cp -r ${frelout[$i]} $ARCHIVE
	3875	fi
	3876	file_saved=true
	3877	elif [[ $archive_system = tivoli ]]
	3878	then
	3879	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3880	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3881	# GELEGT WERDEN
	3882	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3883	chmod g+rx $tmp_data_catalog
	3884	if [[ $files_for_pes = false ]]
	3885	then
	3886	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3887	else
	3888	mkdir $tmp_data_catalog/${frelout[$i]}
	3889	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3890	fi
	3891
	3892	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3893	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3894	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3895	if [[ $files_for_pes = false ]]
	3896	then
	3897	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3898	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3899	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3900	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3901	else
	3902	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3903	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3904	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3905	fi
	3906
[164]	3907	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3908	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3909	file_saved=true
	3910
	3911	elif [[ $archive_system = ut ]]
	3912	then
	3913	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3914	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3915	# GELEGT WERDEN
	3916	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3917	chmod g+rx $tmp_data_catalog
	3918	if [[ $files_for_pes = false ]]
	3919	then
	3920	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3921	else
	3922	mkdir $tmp_data_catalog/${frelout[$i]}
	3923	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3924	fi
	3925
	3926	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3927	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3928	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3929	if [[ $files_for_pes = false ]]
	3930	then
	3931	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3932	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3933	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3934	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3935	else
	3936	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3937	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3938	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3939	fi
	3940
[82]	3941	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3942	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3943	file_saved=true
	3944
	3945	else
	3946	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3947	archive_save=false
	3948	fi
	3949	if [[ $file_saved = true ]]
	3950	then
	3951	if [[ $files_for_pes = false ]]
	3952	then
	3953	cat /dev/null > ${pathout[$i]}
	3954	else
	3955	mkdir -p ${pathout[$i]}
	3956	fi
	3957	fi
	3958	fi
	3959
	3960	# APPEND AUF LOKALER MASCHINE
	3961	if [[ "${actionout[$i]}" = "a" ]]
	3962	then
	3963	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3964	cat ${localout[$i]} >> ${pathout[$i]}
	3965	fi
	3966
	3967	# KOPIEREN AUF LOKALER MASCHINE
	3968	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3969	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3970	then
	3971
	3972	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3973	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3974	then
	3975	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3976	if [[ $link_local_output = true ]]
	3977	then
	3978	printf " using ln -f\n"
	3979	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3980	fi
	3981	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3982	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3983	then
	3984	if [[ $link_local_output = true ]]
	3985	then
	3986	printf " ln failed, using cp...\n"
	3987	fi
	3988	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3989	fi
[1]	3990	else
	3991	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3992	if [[ $link_local_output = true ]]
	3993	then
	3994	printf " using ln -f\n"
	3995	ln -f ${localout[$i]} ${pathout[$i]}
	3996	fi
	3997	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3998	if [[ ! -f "${pathout[$i]}" ]]
	3999	then
	4000	if [[ $link_local_output = true ]]
	4001	then
	4002	printf " ln failed, using cp...\n"
	4003	fi
	4004	cp ${localout[$i]} ${pathout[$i]}
	4005	fi
[1]	4006	fi
	4007
	4008	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	4009	then
	4010
	4011	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4012	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4013	# WIRD DANN KOPIERT
	4014	# PER MOVE UMBENANNT WERDEN
	4015	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4016	if [[ $link_local_output = true ]]
	4017	then
	4018	printf " using ln -f\n"
	4019	mkdir ${pathout[$i]}
	4020	cd ${localout[$i]}
	4021	for file in $(ls *)
	4022	do
	4023	ln -f $file ${pathout[$i]}
	4024	done
	4025	cd $TEMPDIR
	4026	fi
	4027	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4028	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4029	then
	4030	if [[ $link_local_output = true ]]
	4031	then
	4032	printf " ln failed for .../_0000, using cp...\n"
	4033	fi
	4034	cp -r ${localout[$i]} ${pathout[$i]}
	4035	fi
[1]	4036
	4037	fi
	4038	fi
	4039	done
	4040	if (( i != 0 ))
	4041	then
	4042	if [[ $transfer_problems = true ]]
	4043	then
	4044	printf "\n$striche\n *** OUTPUT-files saved"
	4045	printf "\n +++ WARNING: some data transfers failed! \n"
	4046	else
	4047	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4048	fi
	4049	fi
	4050
	4051
	4052	# EVENTUELL FOLGEJOB STARTEN
	4053	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4054	if [[ -f CONTINUE_RUN ]]
	4055	then
	4056
	4057	if [[ $archive_save = true ]]
	4058	then
	4059
	4060	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4061	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4062	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4063	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4064	# HANDEN
	4065	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4066	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4067	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4068	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4069	then
	4070	mc=`echo $mc \| sed 's/#/f/g'`
	4071	fi
	4072
	4073
	4074	# JOB STARTEN
	4075	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4076	echo " $mc"
	4077	printf "\n$striche\n"
	4078	if [[ $localhost != $fromhost ]]
	4079	then
	4080
[204]	4081	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4082	then
	4083	echo "*** ssh will be used to initiate restart-runs!"
	4084	echo " return_addres=\"$return_addres\" "
	4085	echo " return_username=\"$return_username\" "
	4086	if [[ $return_addres = 172.20.25.41 ]]
	4087	then
	4088	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4089	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4090	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4091	then
	4092	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4093	else
[33]	4094	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4095	fi
	4096	else
	4097	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4098	locat=restart; exit
	4099	fi
	4100
	4101	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4102	# DER AKTUELLE JOB ENDET
[399]	4103	if [[ $queue = special1q ]]
	4104	then
	4105	sleep 120
	4106	else
	4107	sleep 30
	4108	fi
[1]	4109
	4110	else
	4111
	4112	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4113	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4114	cd $LOCAL_PWD
[108]	4115	if [[ $localhost = lcfimm ]]
	4116	then
	4117	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4118	else
	4119	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4120	fi
[1]	4121	cd - > /dev/null
	4122	fi
	4123	printf "\n$striche\n *** restart-run initiated \n"
	4124
	4125
	4126	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4127	# GEHOLT WORDEN SIND, LOESCHEN
	4128	(( i = 0 ))
	4129	while (( i < iin ))
	4130	do
	4131	(( i = i + 1 ))
	4132	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4133	then
	4134	rm -r $tmp_data_catalog/${frelin[$i]}
	4135	fi
	4136	done
	4137
	4138	else
	4139
	4140	printf "\n +++ no restart-run possible, since errors occured"
	4141	printf "\n during the archive process"
	4142	fi
	4143
	4144	fi
	4145
	4146
	4147
	4148	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4149	if [[ "$email_notification" != "none" ]]
[1]	4150	then
	4151
	4152	if [[ $localhost != $fromhost ]]
	4153	then
	4154	if [[ -f CONTINUE_RUN ]]
	4155	then
	4156	echo "PALM restart run necessary" > email_text
	4157	echo "description header of actual run:" >> email_text
	4158	cat CONTINUE_RUN >> email_text
	4159	echo "mrun-command to restart:" >> email_text
	4160	echo "$mc" >> email_text
	4161	else
	4162	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4163	fi
	4164	mail $email_notification < email_text
	4165	printf "\n *** email notification sent to \"$email_notification\" "
	4166	fi
	4167	fi
	4168
	4169
	4170
	4171	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4172	cd $HOME
	4173	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4174
	4175	else
	4176
	4177
	4178	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4179	# CHENDE AKTIONEN DURCHGEFUEHRT
	4180
	4181	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4182	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4183	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4184	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4185	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4186	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4187	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4188	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4189	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4190	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4191	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4192	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4193	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4194	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4195	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4196	if [[ $use_openmp = true ]]
	4197	then
	4198	mrun_com=${mrun_com}" -O"
	4199	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4200	else
	4201	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4202	fi
[397]	4203	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
[1]	4204	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4205	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4206	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4207	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4208	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4209	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4210	if [[ $do_remote = true ]]
	4211	then
	4212	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4213	fi
	4214
	4215
	4216	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4217	jobfile=jobfile.$RANDOM
	4218
	4219
	4220	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4221	echo "mkdir $TEMPDIR" >> $jobfile
	4222	echo "cd $TEMPDIR" >> $jobfile
	4223
	4224
	4225	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4226	if [[ $do_trace = true ]]
	4227	then
	4228	echo "set -x" >> $jobfile
	4229	else
	4230	echo "set +vx" >> $jobfile
	4231	fi
	4232
	4233
[191]	4234	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4235	# DATEI FUER DEN JOB
	4236	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4237	then
	4238
[191]	4239	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4240	# KOPIEREN
	4241	if [[ $restart_run != true ]]
	4242	then
	4243	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4244	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4245	fi
[1]	4246
[191]	4247	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4248	echo "set -x" >> $jobfile
	4249	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4250	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4251
[193]	4252	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4253	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4254	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4255	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4256	echo "execute_mrun=true" >> $jobfile
	4257	echo " " >> $jobfile
	4258
[191]	4259	else
	4260
	4261	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4262	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4263	if [[ $do_compile = true ]]
	4264	then
	4265
	4266	source_catalog=SOURCES_FOR_RUN_$fname
	4267
	4268	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4269	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4270	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4271	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4272	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4273	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4274
	4275	for filename in $source_list
	4276	do
	4277	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4278	echo "cat > $filename << \"%END%\"" >> $jobfile
	4279	cat $source_catalog/$filename >> $jobfile
	4280	echo " " >> $jobfile
	4281	echo "%END%" >> $jobfile
	4282	echo " " >> $jobfile
	4283	done
	4284
[1]	4285	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4286	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4287	cat $source_catalog/Makefile >> $jobfile
[1]	4288	echo " " >> $jobfile
	4289	echo "%END%" >> $jobfile
	4290	echo " " >> $jobfile
	4291
[191]	4292	echo "cd - > /dev/null" >> $jobfile
[1]	4293
[191]	4294	fi
[1]	4295
	4296
[191]	4297	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4298	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4299	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4300	cat $config_file >> $jobfile
	4301	echo "%END%" >> $jobfile
	4302	echo " " >> $jobfile
[1]	4303
	4304
[191]	4305	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4306	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4307	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4308	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4309	echo "%END%" >> $jobfile
	4310	if [[ $host = lctit ]]
	4311	then
	4312	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4313	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4314	fi
	4315	echo "chmod u+x $mrun_script_name" >> $jobfile
	4316	echo "execute_mrun=true" >> $jobfile
	4317	echo " " >> $jobfile
[1]	4318
	4319	fi
	4320
[191]	4321
[1]	4322	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4323	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4324	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4325	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4326	if [[ $do_remote = true ]]
	4327	then
	4328	(( i = 0 ))
	4329	while (( i < iin ))
	4330	do
	4331	(( i = i + 1 ))
	4332	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4333	if [[ "${transin[$i]}" = job ]]
	4334	then
	4335	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4336	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4337	echo " " >> $jobfile
	4338	echo "%END%" >> $jobfile
	4339	else
[82]	4340	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4341	fi
	4342
	4343	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4344	echo "if [[ \$? = 1 ]]" >> $jobfile
	4345	echo "then" >> $jobfile
	4346	echo " echo \" \" " >> $jobfile
	4347	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4348	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4349	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4350	echo " execute_mrun=false" >> $jobfile
	4351	echo "fi" >> $jobfile
	4352	done
	4353	fi
	4354
	4355	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4356	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4357	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4358	echo "export LOCAL_PWD" >> $jobfile
	4359
	4360	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4361	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4362	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4363
[66]	4364	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4365	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4366	then
	4367	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4368	fi
[1]	4369
	4370	# MRUN AUF ZIELRECHNER AUFRUFEN
	4371	echo "set -x" >> $jobfile
	4372	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4373
	4374	echo 'ls -al; echo `pwd`' >> $jobfile
	4375	echo "cd \$HOME" >> $jobfile
	4376	echo "rm -rf $TEMPDIR" >> $jobfile
	4377
	4378
	4379
	4380
	4381	# JOB PER SUBJOB STARTEN
	4382	if [[ $silent = false ]]
	4383	then
	4384	printf "\n "
	4385	else
	4386	printf "\n\n"
	4387	fi
	4388
[352]	4389	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4390	rm -rf $jobfile
	4391
	4392
	4393	fi # ENDE REMOTE-TEIL
	4394
	4395
	4396
	4397	# ENDE DER PROZEDUR

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