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source: palm/trunk/SCRIPTS/mrun @ 393

Last change on this file since 393 was 388, checked in by raasch, 15 years ago
in-situ AND potential density are calculated and used in the ocean version
Property svn:keywords set to `Id Rev`
File size: 166.6 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 388 2009-09-23 09:40:33Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[211]	192
[1]	193
	194	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	195
	196	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	197	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	198	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	199
	200	AddFilenames=""
	201	additional_conditions=""
	202	add_source_path=""
	203	afname=""
	204	archive_save=true
	205	archive_system=none
	206	compiler_name=""
	207	cond1=""
	208	cond2=""
	209	config_file=.mrun.config
[206]	210	coupled_dist=""
	211	coupled_mode="mpi1"
[1]	212	cpp_opts=""
[82]	213	cpp_options=""
[1]	214	cpumax=0
	215	cpurest=0
	216	delete_temporary_catalog=true
	217	do_batch=false
	218	do_compile=true
	219	do_remote=false
	220	do_stagein=true
	221	do_stageout=true
	222	do_trace=false
[352]	223	email_notification="none"
[1]	224	exclude=""
	225	executable=""
	226	execution_error=false
[67]	227	fimm=false
[1]	228	fname=test
	229	fromhost=""
[78]	230	global_revision=""
[122]	231	group_number=none
[1]	232	host=""
	233	host_file=""
	234	hp=""
	235	ignore_archive_error=false
	236	input_list=""
	237	interpreted_config_file=""
[164]	238	job_catalog="~/job_queue"
[1]	239	job_on_file=""
	240	keep_data_from_previous_run=false
[183]	241	link_local_input=false
[149]	242	link_local_output=false
[1]	243	localhost_realname=$(hostname)
	244	local_compile=false
[260]	245	local_dvrserver_running=.FALSE.
[1]	246	locat=normal
	247	mainprog=""
	248	makefile=""
	249	mc=$0
	250	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	251	do
	252	mc=`echo $mc \| cut -f2- -d"/"`
	253	done
	254	module_files=""
	255	mrun_script_name=$mc
[82]	256	netcdf_inc=""
	257	netcdf_lib=""
[1]	258	netcdf_support=false
	259	node_usage=default
	260	numprocs=""
[206]	261	numprocs_atmos=0
	262	numprocs_ocean=0
[1]	263	OOPT=""
	264	openmp=false
	265	output_list=""
	266	package_list=""
	267	punkte="..........................................................."
	268	queue=none
	269	read_from_config=""
[5]	270	restart_run=false
[146]	271	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	272	if [[ $return_addres = 130.75.105.158 ]]
	273	then
	274	return_addres=172.20.25.41
	275	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	276	fi
	277	return_password=""
	278	return_username=$LOGNAME
	279	remotecall=false
	280	remote_username=""
[102]	281	run_coupled_model=false
[1]	282	run_mode=""
	283	scirocco=false
	284	store_on_archive_system=true
	285	striche=" ----------------------------------------------------------------------------"
	286	silent=false
	287	source_list=""
	288	source_path=SOURCE
	289	tasks_per_node=""
	290	threads_per_task=1
	291	tmpcreate=false
	292	tmp_data_catalog=""
	293	transfer_problems=false
	294	usern=$LOGNAME
[377]	295	use_openmp=false
[1]	296	working_directory=`pwd`
	297	TOPT=""
	298	XOPT=""
	299	zeit=$( date \| cut -c 12-19 )
	300
	301	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	302	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	303
[66]	304	typeset -R30 calltime
[1]	305	typeset -L20 spalte1
	306	typeset -L40 spalte2
	307	typeset -L60 spalte3
	308	typeset -L35 string1=`date`
	309	typeset -L12 string2=$usern
	310	typeset -L12 string3=$localhost_realname
	311	typeset -L12 string4
	312	typeset -L12 string5
[201]	313	typeset -L30 version="MRUN 2.0 Rev$Rev: 388 $"
[1]	314
	315
	316
	317	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	318	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	319
	320	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	321	# EXPORTIERT WERDEN
	322	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	323	export group_number input_list memory numprocs output_list queue run_mode
[1]	324
	325
	326
	327	# FEHLERBEHANDLUNG
	328	# BEI EXIT:
[83]	329	trap 'rm -rf $working_directory/tmp_mrun
[69]	330	if [[ $locat != localhost ]]
[1]	331	then
[22]	332	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	333	# then
	334	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	335	#MRUN-calls on $localhost
	336	#
	337	#date and time user localhost remotehost termination mrun-command
	338	#--------------------------------------------------------------------------------------------------------------------
	339	#%STATEND%
	340	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	341	# fi
	342	#
	343	# # EINTRAG IN DIE STATISTIK-DATEI
	344	# string4=$host
	345	# string5=$locat
	346	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	347	# then
	348	# if [[ $do_batch = true ]]
	349	# then
	350	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	351	# else
	352	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	353	# fi
	354	# fi
[69]	355	echo " " > /dev/null
[1]	356	fi
	357
	358	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	359	then
	360
	361	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	362	(( i = 0 ))
	363	while (( i < iec ))
	364	do
	365	(( i = i + 1 ))
	366	printf "\n *** Execution of ERROR-command:\n"
	367	printf " >>> ${err_command[$i]}\n"
	368	eval ${err_command[$i]}
	369	done
	370	if [[ -n $interpreted_config_file ]] then
	371	rm -rf $interpreted_config_file
	372	fi
[71]	373	if [[ -n .mrun_environment ]] then
	374	rm -rf .mrun_environment
	375	fi
[1]	376	if [[ $tmpcreate = true ]]
	377	then
	378	printf "\n *** Contents of \"$TEMPDIR\":\n"
	379	ls -al; cd
	380	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	381	fi
[260]	382	if [[ "$dvrserver_id" != "" ]]
	383	then
	384	echo "+++ killing dvrserver_id=$dvrserver_id"
	385	kill $dvrserver_id
	386	fi
[1]	387	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	388	then
	389	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	390	fi
	391	printf "\n\n+++ MRUN killed \n\n"
	392	elif [[ $locat != control_c ]]
	393	then
	394	printf "\n\n --> all actions finished\n\n"
	395	printf " Bye, bye $usern !!\n\n"
	396	fi' exit
	397
	398
	399	# BEI TERMINAL-BREAK:
[83]	400	trap 'rm -rf $working_directory/tmp_mrun
[69]	401	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	402	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	403	then
	404	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	405	fi
[260]	406	if [[ "$dvrserver_id" != "" ]]
	407	then
	408	echo "+++ killing dvrserver_id=$dvrserver_id"
	409	kill $dvrserver_id
	410	fi
[1]	411	printf "\n+++ MRUN killed by \"^C\" \n\n"
	412	locat=control_c
	413	exit
	414	' 2
	415
	416
[22]	417	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	418	# BEEN SET
	419	if [[ "$PALM_BIN" = "" ]]
	420	then
	421	printf "\n +++ environment variable PALM_BIN has not been set"
	422	printf "\n please set it to the directory where the PALM scripts are located"
	423	locat=palm_bin; exit
	424	fi
[180]	425	export PATH=$PALM_BIN:$PATH
[22]	426
	427
[1]	428
	429	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	430	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	431	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	432	do
	433	case $option in
	434	(a) afname=$OPTARG;;
	435	(A) store_on_archive_system=false; mc="$mc -A";;
	436	(b) do_batch=true; mc="$mc -b";;
	437	(B) delete_temporary_catalog=false; mc="$mc -B";;
	438	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	439	(C) restart_run=true; mc="$mc -C";;
[1]	440	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	441	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	442	(F) job_on_file="-D"; mc="$mc -F";;
[122]	443	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	444	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	445	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	446	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	447	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	448	(I) ignore_archive_error=true; mc="$mc -I";;
	449	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	450	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	451	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	452	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	453	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	454	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	455	(O) use_openmp=true; mc="$mc -O";;
	456	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	457	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	458	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	459	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	460	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	461	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	462	(S) read_from_config=false; mc="$mc -S";;
	463	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	464	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	465	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	466	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	467	(v) silent=true; mc="$mc -v";;
	468	(x) do_trace=true;set -x; mc="$mc -x";;
	469	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	470	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	471	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	472	(\?) printf "\n +++ unknown option $OPTARG \n"
	473	printf "\n --> type \"$0 ?\" for available options \n"
	474	locat=parameter;exit;;
	475	esac
	476	done
	477
	478
	479	# EVTL. POSITIONSPARAMETER EINLESEN
	480	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	481	shift OPTIND-1
	482
	483
	484	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	485	if [[ "$1" = "?" ]]
	486	then
	487	(printf "\n *** mrun can be called as follows:\n"
[291]	488	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	489	printf "\n Description of available options:\n"
	490	printf "\n Option Description Default-Value"
	491	printf "\n -a base name of input files equiv. -d"
	492	printf "\n -A no archiving when using file-attribute fl"
	493	printf "\n -b batch-job on local machine ---"
	494	printf "\n -B do not delete temporary directory at end ---"
	495	printf "\n -c configuration file .mrun.config"
	496	printf "\n -d base name of files attached to program test"
	497	printf "\n -D preprocessor(cpp)-directives \"\" "
	498	printf "\n -F create remote job file only ---"
	499	printf "\n -h execution host $localhost_realname"
	500	printf "\n -i INPUT control list \"\" "
	501	printf "\n -I archiving errors of previous batch-jobs"
	502	printf "\n will be ignored"
	503	printf "\n -k keep data from previous run"
	504	printf "\n -K additional conditions for controling"
	505	printf "\n usage of conditional code and"
	506	printf "\n env-variables in configuration file \"\" "
	507	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	508	printf "\n -M Makefile name Makefile"
	509	printf "\n -n node usage (shared/not_shared) depending on -h"
	510	printf "\n -o OUTPUT control list \"\" "
	511	printf "\n -O use OpenMP ---"
	512	printf "\n -p software package list \"\" "
	513	printf "\n -q queue \"$queue\" "
	514	printf "\n -r run control list (combines -i -o) \"\" "
	515	printf "\n -s filenames of routines to be compiled \"\" "
	516	printf "\n must end with .f, .f90, .F, or .c !"
	517	printf "\n use \"..\" for more than one file and wildcards"
	518	printf "\n -s TEST compiles all files with w-permit"
	519	printf "\n -S config file interpreted by shellscript ---"
	520	printf "\n -t allowed cpu-time in seconds (batch) 0"
	521	printf "\n -T tasks per node depending on -h"
	522	printf "\n -u username on remote machine \"\" "
	523	printf "\n -v no prompt for confirmation ---"
	524	printf "\n -x tracing of mrun for debug purposes ---"
	525	printf "\n -X # of processors (on parallel machines) 1"
[291]	526	printf "\n -y add appendix \"_O\" to all local output"
	527	printf "\n files (ocean precursor runs followed by"
	528	printf "\n coupled atmosphere-ocean runs) ---"
[206]	529	printf "\n -Y run coupled model, \"#1 #2\" with"
	530	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	531	printf "\n "
	532	printf "\n Possible values of positional parameter <modus>:"
	533	printf "\n \"?\" - this outline \n\n") \| more
	534	exit
	535	elif [[ "$1" != "" ]]
	536	then
	537	printf "\n +++ positional parameter $1 unknown \n"
	538	locat=parameter; exit
	539	fi
	540
	541
	542
	543	# KURZE STARTMELDUNG
	544	printf "\n*** $version "
	545	printf "\n will be executed. Please wait ..."
	546
	547
[82]	548
	549	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	550	if [[ ! -f $config_file ]]
	551	then
	552	printf "\n\n +++ configuration file: "
	553	printf "\n $config_file"
	554	printf "\n does not exist"
	555	locat=connect; exit
	556	fi
	557
	558
	559	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	560	line=""
	561	grep "%host_identifier" $config_file > tmp_mrun
	562	while read line
	563	do
[206]	564	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	565	then
	566	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	567	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	568	if [[ $localhost_realname = $HOSTNAME ]]
[82]	569	then
	570	localhost=$host_identifier
	571	break
	572	fi
	573	fi
	574	done < tmp_mrun
	575
	576	if [[ "$localhost" = "" ]]
	577	then
	578	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	579	printf "\n for local host \"$localhost_realname\"."
	580	printf "\n Please add line"
	581	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	582	printf "\n to the configuration file."
	583	locat=localhost; exit
	584	fi
	585
	586
	587	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	588	case $localhost_realname in
	589	(breg-en0\|berni-en0) archive_system=tivoli;;
	590	(cs*) archive_system=ut;;
	591	(fimm.bccs.uib.no) fimm=true;;
	592	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	593	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	594	(scirocco) scirocco=true;;
	595	esac
	596
	597
	598
[1]	599	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	600	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	601	[[ "$afname" = "" ]] && afname=$fname
	602
	603
	604	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	605	if [[ "$run_mode" != "" ]]
	606	then
	607	input_list="$input_list $run_mode"
	608	output_list="$output_list $run_mode"
	609	fi
	610
	611
	612	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	613	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	614	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	615	# STARTET)
	616	if [[ "$fromhost" = "" ]]
	617	then
	618	fromhost=$localhost
	619	fi
	620
	621
	622	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	623	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	624	then
	625	source_list=TEST
	626	local_compile=true
	627	host=$localhost
	628	fi
	629
	630
	631	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	632	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	633	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	634	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	635	if [[ -n $host && "$host" != $localhost ]]
	636	then
	637	do_batch=true
	638	do_remote=true
	639	case $host in
[367]	640	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	641	(*) printf "\n"
[83]	642	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	643	printf "\n is not available"
[1]	644	locat=nqs; (( iec = 0 )); exit;;
	645	esac
	646	else
	647	host=$localhost
	648	fi
	649
	650
	651	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	652	if [[ -n $additional_conditions ]]
	653	then
[69]	654	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	655	cond1=`echo $additional_conditions \| cut -d" " -f1`
	656	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	657	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	658	if [[ -n $dummy ]]
	659	then
	660	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	661	locat=options; exit
	662	fi
	663	fi
	664
	665
[206]	666	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	667	if [[ $run_coupled_model = true ]]
	668	then
	669
	670	if [[ -n $coupled_dist ]]
	671	then
	672
	673	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	674	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	675
	676	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	677	then
	678
	679	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	680	printf "\n PEs (total) : $numprocs"
	681	printf "\n PEs (atmosphere): $numprocs_atmos"
	682	printf "\n PEs (ocean) : $numprocs_ocean"
	683	locat=coupling; exit
	684
	685	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	686	# THIS SHOULD BE REMOVED IN FUTURE
	687	elif (( $numprocs_ocean != $numprocs_atmos ))
	688	then
	689
	690	printf "\n +++ currently only 1:1 topologies are supported"
	691	printf "\n PEs (total) : $numprocs"
	692	printf "\n PEs (atmosphere): $numprocs_atmos"
	693	printf "\n PEs (ocean) : $numprocs_ocean"
	694	(( numprocs_atmos = $numprocs / 2 ))
	695	(( numprocs_ocean = $numprocs / 2 ))
	696	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	697
	698	fi
	699
	700	else
	701
	702	(( numprocs_ocean = $numprocs / 2 ))
	703	(( numprocs_atmos = $numprocs / 2 ))
	704
	705	fi
	706	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	707
	708	# GET coupled_mode FROM THE CONFIG FILE
	709	line=""
	710	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	711	while read line
	712	do
	713	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	714	then
	715	coupled_mode="mpi2"
	716	fi
	717	done < tmp_mrun
	718
	719	fi
	720
	721
[1]	722	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	723	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	724	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	725	then
	726	if [[ $ignore_archive_error = false ]]
	727	then
	728	printf "\n +++ data archiving of previous run failed"
	729	printf "\n see directory \~/job_queue on remote machine"
	730	locat=archive; exit
	731	else
	732	printf "\n +++ warning: data archiving in a previous run failed"
	733	printf "\n MRUN continues, trying to get backup copy"
	734	fi
	735	fi
	736
	737
	738
	739	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	740	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	741	if [[ "$read_from_config" = false ]]
	742	then
	743
	744	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	745	while read zeile
	746	do
	747	[[ $silent = false ]] && printf "."
	748
	749
	750	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	751	# ERSETZEN
	752	eval zeile=\"$zeile\"
	753
	754
	755	# INTERPRETATION DER ZEILE
[21]	756	if [[ "$(echo $zeile)" = "" ]]
[1]	757	then
[21]	758	# LEERZEILE, KEINE AKTION
	759	continue
[1]	760
[21]	761	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	762	then
	763
[1]	764	# ZEILE IST KOMMENTARZEILE
	765	true
	766
	767	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	768	then
	769
	770	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	771	zeile=$(echo $zeile \| cut -c2-)
[69]	772	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	773	var=`echo $zeile \| cut -d" " -f1`
	774	value=`echo $zeile \| cut -d" " -s -f2`
	775	for_host=`echo $zeile \| cut -d" " -s -f3`
	776	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	777	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	778
	779	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	780	then
	781
	782	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	783	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	784	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	785
	786
	787	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	788	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	789	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	790	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	791	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	792	# KONFIGURATIONSDATEI
	793	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	794	then
	795	eval $var=\$value
	796
	797	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	798	if [[ $do_trace = true ]]
	799	then
	800	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	801	fi
	802	fi
	803
	804	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	805	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	806	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	807	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	808	if [[ $var = host ]]
	809	then
	810	if [[ -n $host && "$host" != $localhost ]]
	811	then
	812	do_batch=true
	813	do_remote=true
	814	case $host in
[367]	815	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	816	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	817	printf "\n is not available"
[1]	818	locat=nqs; exit;;
	819	esac
	820	else
	821	host=$localhost
	822	fi
	823	fi
	824
	825	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	826	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	827	# DEN PROGRAMMEN BENOETIGT WERDEN
	828	export $var
	829	fi
	830
	831
	832
	833
	834	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	835	then
	836
	837	# ZEILE DEFINIERT ERROR-KOMMANDO
	838	(( iec = iec + 1 ))
	839	zeile=$(echo $zeile \| cut -c4-)
	840	err_command[$iec]="$zeile"
	841
	842	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	843	then
	844
	845	# ZEILE DEFINIERT INPUT-KOMMANDO
	846	(( iic = iic + 1 ))
	847	zeile=$(echo $zeile \| cut -c4-)
	848	in_command[$iic]="$zeile"
	849
	850	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	851	then
	852
	853	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	854	(( ioc = ioc + 1 ))
	855	zeile=$(echo $zeile \| cut -c4-)
	856	out_command[$ioc]="$zeile"
	857
	858	else
	859
	860	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	861	# s2a: in/out - Feld
	862	# s2b: loc - Feld (optional)
	863	# s2c: tr/ar - Feld (optional)
[69]	864	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	865	s1=`echo $zeile \| cut -d" " -f1`
	866	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	867	s2a=$(echo $s2 \| cut -d":" -f1)
	868	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	869	then
	870	s2b=""
	871	s2c=""
	872	else
[69]	873	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	874	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	875	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	876	fi
[69]	877	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	878	s3=`echo $zeile \| cut -d" " -f3`
	879	s4=`echo $zeile \| cut -d" " -s -f4`
	880	s5=`echo $zeile \| cut -d" " -s -f5`
	881	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	882
	883
	884	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	885	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	886	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	887	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	888	# HANDEN SEIN MUSS (D.H. s2b = loc)
	889	IFSALT="$IFS"; IFS="$IFS:"
	890	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	891	then
	892	found=false
	893	for actual in $input_list
	894	do
	895	for formal in $s3
	896	do
	897	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	898	done
	899	done
	900	if [[ $found = true ]]
	901	then
	902	(( iin = iin + 1 ))
	903	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	904	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	905	extin[$iin]=$s6
	906	fi
	907	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	908	then
	909	found=false
	910	for actual in $output_list
	911	do
	912	for formal in $s3
	913	do
	914	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	915	done
	916	done
	917	if [[ $found = true ]]
	918	then
	919	(( iout = iout + 1 ))
	920	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	921	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	922	fi
	923	elif [[ "$s2a" != in && "$s2a" != out ]]
	924	then
	925	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	926	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	927	locat=connect; exit
	928	fi
	929	IFS="$IFSALT"
	930	fi
	931	done < $config_file
	932
	933	else
	934
	935
	936	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	937	[[ $silent = false ]] && printf "..."
	938	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	939	export interpreted_config_file=.icf.$RANDOM
	940
	941
[69]	942
	943	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	944	# VERFUEGUNG STELLEN
	945	cat > .mrun_environment << %%END%%
	946	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	947	config_file = '$config_file', do_remote = '$do_remote',
	948	do_trace = '$do_trace', host = '$host',
	949	input_list = '$input_list', icf = '$interpreted_config_file',
	950	localhost = '$localhost', output_list = '$output_list' /
	951
	952	%%END%%
	953
	954	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	955	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	956	mrun_memory=$memory
[127]	957	mrun_group_number=$group_number
[69]	958	mrun_cpumax=$cpumax
	959	mrun_numprocs=$numprocs
	960
[251]	961	if [[ $localhost_realname = "sx-fep" ]]
[66]	962	then
[251]	963	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	964	else
	965	interpret_config.x
	966	fi
[71]	967	rm .mrun_environment
[1]	968
[71]	969
[1]	970	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	971	chmod u+x $interpreted_config_file
	972	export PATH=$PATH:.
	973	. $interpreted_config_file
[71]	974	rm $interpreted_config_file
[1]	975
[71]	976
[69]	977	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	978	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	979	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	980	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	981	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	982
[1]	983	fi
	984
	985
	986	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	987	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	988	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	989	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	990	if [[ "$SOURCES_COMPLETE" = "" ]]
	991	then
	992
	993	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	994	# VEREINBART WURDE
	995	source_path=""
	996	line=""
	997	grep "%source_path" $config_file > tmp_mrun
	998	while read line
	999	do
	1000	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1001	then
	1002	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1003	then
	1004	global_source_path=`echo $line \| cut -d" " -f2`
	1005	fi
	1006	fi
	1007	done < tmp_mrun
	1008
	1009	line=""
	1010	found=false
	1011	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1012	while read line
	1013	do
	1014	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1015	then
	1016	if [[ $found = true ]]
	1017	then
	1018	printf "\n\n +++ more than one source path found in configuration file"
	1019	printf "\n for local host \"$localhost\" "
	1020	locat=source_path; exit
	1021	fi
	1022	source_path=`echo $line \| cut -d" " -f2`
	1023	found=true
	1024	fi
	1025	done < tmp_mrun
	1026	rm tmp_mrun
	1027
	1028	if [[ "$source_path" = "" ]]
	1029	then
	1030	if [[ "$global_source_path" != "" ]]
	1031	then
	1032	source_path=$global_source_path
	1033	else
	1034	printf "\n\n +++ no source path found in configuration file"
	1035	printf "\n for local host \"$localhost\" "
	1036	locat=source_path; exit
	1037	fi
	1038	fi
	1039	eval source_path=$source_path
	1040
	1041	if [[ ! -d $source_path ]]
	1042	then
	1043	printf "\n\n +++ source path \"$source_path\" on local host"
	1044	printf "\n \"$localhost\" does not exist"
	1045	locat=source_path; exit
	1046	fi
	1047
	1048	fi
	1049
	1050
[78]	1051	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1052	# DURCH OPTION -G MITGETEILT)
	1053	if [[ "$global_revision" = "" ]]
	1054	then
	1055	global_revision=`svnversion $source_path 2>/dev/null`
	1056	global_revision="Rev: $global_revision"
	1057	fi
[1]	1058
[78]	1059
[1]	1060	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1061	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1062	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1063	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1064	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1065	if [[ -n $host && "$host" != $localhost ]]
	1066	then
	1067	do_batch=true
	1068	do_remote=true
	1069	case $host in
[367]	1070	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1071	(*) printf "\n"
[83]	1072	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1073	printf "\n is not available"
[1]	1074	locat=nqs; (( iec = 0 )); exit;;
	1075	esac
	1076	else
	1077	host=$localhost
	1078	fi
	1079
	1080
	1081	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1082	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1083	then
	1084
	1085	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1086	if [[ ! -n $numprocs ]]
	1087	then
	1088	printf "\n"
	1089	printf "\n +++ option \"-K parallel\" requires additional specification"
	1090	printf "\n of the number of processors to be used by"
	1091	printf "\n mrun-option \"-X\" or by environment-variable"
	1092	printf "\n \"numprocs\" in the configuration file"
	1093	locat=numprocs; (( iec = 0 )); exit
	1094	fi
	1095
	1096	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1097	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1098	# GESAMTPROZESSORANZAHL IST
[251]	1099	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1100	then
	1101	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1102	(( ival = $tasks_per_node ))
	1103	(( pes = numprocs ))
	1104	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1105	# then
	1106	# (( pes = pes - 1 ))
	1107	# fi
	1108	(( ii = pes / ival ))
	1109	if (( pes - ii * ival > 0 ))
	1110	then
	1111	printf "\n"
	1112	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1113	printf "\n divisor of the total number of processors (option \"-X\")"
	1114	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1115	locat=tasks_per_node; (( iec = 0 )); exit
	1116	fi
	1117	fi
	1118
	1119	# IBMY HAT NUR EINEN KNOTEN
	1120	if [[ $host = ibmy ]]
	1121	then
	1122	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1123	then
	1124	printf "\n"
	1125	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1126	printf "\n total number of processors (option \"-X\")"
	1127	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1128	locat=tasks_per_node; (( iec = 0 )); exit
	1129	fi
	1130	fi
	1131
	1132	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1133	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1134	if [[ $use_openmp = true ]]
	1135	then
	1136	threads_per_task=$tasks_per_node
	1137	tasks_per_node=1
	1138	fi
[377]	1139
	1140	# SETTINGS FOR SUBJOB-COMMAND
	1141	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1142	then
	1143	(( tp1 = tasks_per_node * threads_per_task ))
	1144	TOPT="-T $tp1"
	1145	else
	1146	TOPT="-T $tasks_per_node"
	1147	fi
[1]	1148	OOPT="-O $threads_per_task"
	1149
	1150	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1151	if [[ "$tasks_per_node" != "" ]]
	1152	then
	1153	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1154	fi
	1155
	1156	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1157	# SETZEN
	1158	if [[ $node_usage = default ]]
	1159	then
	1160	if [[ $host = ibms ]]
	1161	then
	1162	node_usage=shared
[118]	1163	elif [[ $host = lctit ]]
	1164	then
[265]	1165	node_usage=RAM64GB
[181]	1166	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1167	then
	1168	node_usage=singlejob
[1]	1169	else
	1170	node_usage=not_shared
	1171	fi
	1172	fi
[181]	1173
[265]	1174	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1175	then
	1176	printf "\n"
	1177	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1178	printf "\n \"shared\" or \"not_shared\""
	1179	locat=tasks_per_node; (( iec = 0 )); exit
	1180	fi
	1181
	1182	fi
	1183
	1184	# PRUEFEN, OB HOSTFILE EXISTIERT
	1185	if [[ -n $hostfile ]]
	1186	then
	1187	if [[ ! -f $hostfile ]]
	1188	then
	1189	printf "\n"
	1190	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1191	locat=hostfile; exit
	1192	fi
	1193	fi
	1194
	1195	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1196	if [[ $host = ibmy && $do_remote = false ]]
	1197	then
	1198	if [[ ! -f $HOME/.rhosts ]]
	1199	then
	1200	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1201	printf "\n\n *** file:"
	1202	printf "\n $HOME/.rhosts"
	1203	printf "\n was created\n"
	1204	fi
	1205	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1206	then
	1207	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1208	printf "\n\n *** file:"
	1209	printf "\n $HOME/.rhosts"
	1210	printf "\n was extended by the name of the current host\n"
	1211	fi
	1212	fi
	1213
	1214
	1215
	1216	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1217	if [[ $queue = none ]]
	1218	then
	1219	case $host in
	1220	(ibmb) if [[ $node_usage = shared ]]
	1221	then
	1222	queue=cshare
	1223	else
	1224	queue=csolo
	1225	fi;;
[312]	1226	(ibmh) queue=no_class;;
[1]	1227	(ibmy) queue=parallel;;
[191]	1228	(lcsgib) queue=bigq;;
	1229	(lcsgih) queue=bigq;;
[265]	1230	(lctit) queue=RAM64GB;;
[1]	1231	(nech) queue=none;;
[253]	1232	(necriam) queue=SP;;
[1]	1233	(unics) queue=unics;;
	1234	esac
	1235	fi
	1236
	1237
	1238	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1239	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1240	# ERMITTELN
	1241	(( i = 0 ))
	1242	while (( i < iin ))
	1243	do
	1244	(( i = i + 1 ))
	1245	(( maxcycle = 0 ))
	1246
	1247	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1248	if [[ "${actionin[$i]}" = di ]]
	1249	then
	1250	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1251	# REM-MASCHINE AUSWERTEN
	1252	eval filename=${pathin[$i]}/${endin[$i]}
	1253	else
	1254	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1255	# REM-MASCHINE AUSWERTEN
	1256	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1257	fi
	1258
	1259	# PRUEFEN AUF VORHANDENSEIN
	1260	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1261	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1262	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1263	then
	1264	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1265	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1266	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1267	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1268	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1269	if [[ "${transin[$i]}" != "locopt" ]]
	1270	then
	1271	printf "\n\n +++ INPUT-file: "
	1272	if [[ "${extin[$i]}" = "" ]]
	1273	then
	1274	printf "\n $filename"
	1275	else
	1276	printf "\n $filename.${extin[$i]}"
	1277	fi
	1278	printf "\n does not exist\n"
	1279	locat=input; exit
	1280	else
	1281	transin[$i]="unavailable"
	1282	fi
	1283	else
	1284
	1285	# ZYKLUSNUMMER FESTSTELLEN
	1286	ls -1 -d $filename > filelist 2>/dev/null
	1287	ls -1 -d $filename.* >> filelist 2>/dev/null
	1288	while read zeile
	1289	do
	1290	cycle=$(print $zeile \| cut -f2 -d".")
	1291	if [[ "$cycle" = "$zeile" ]]
	1292	then
	1293	(( icycle = 0 ))
	1294	elif [[ "$cycle" = "${extin[$i]}" ]]
	1295	then
	1296	(( icycle = 0 ))
	1297	else
	1298	(( icycle = $cycle ))
	1299	fi
	1300	if (( icycle > maxcycle ))
	1301	then
	1302	(( maxcycle = icycle ))
	1303	file_to_be_used=$zeile
	1304	fi
	1305	done <filelist
	1306	rm filelist
	1307
	1308	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1309	if (( maxcycle > 0 ))
	1310	then
	1311	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1312	then
	1313	filename=${filename}.$maxcycle.${extin[$i]}
	1314	else
	1315	filename=${filename}.$maxcycle
	1316	fi
	1317	else
	1318	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1319	then
	1320	filename=${filename}.${extin[$i]}
	1321	fi
	1322	fi
	1323
	1324	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1325	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1326	absnamein[$i]=$filename
	1327	if (( maxcycle > 0 ))
	1328	then
	1329	if [[ "${actionin[$i]}" = di ]]
	1330	then
	1331	frelin[$i]=${endin[$i]}.$maxcycle
	1332	else
	1333	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1334	fi
	1335	else
	1336	if [[ "${actionin[$i]}" = di ]]
	1337	then
	1338	frelin[$i]=${endin[$i]}
	1339	else
	1340	frelin[$i]=${afname}${endin[$i]}
	1341	fi
	1342	fi
	1343
	1344	fi
	1345	done
	1346
	1347
	1348	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1349	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1350	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1351	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1352	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1353	(( i = 0 ))
	1354	while (( i < iout ))
	1355	do
	1356	(( i = i + 1 ))
	1357	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1358	then
[260]	1359	if [[ "${actionout[$i]}" = tr ]]
[1]	1360	then
	1361	actionout[$i]=""
[260]	1362	elif [[ "${actionout[$i]}" = trpe ]]
	1363	then
	1364	actionout[$i]=pe
[1]	1365	elif [[ "${actionout[$i]}" = tra ]]
	1366	then
	1367	actionout[$i]=a
	1368	fi
	1369	(( maxcycle = 0 ))
	1370	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1371	eval catalogname=${pathout[$i]}
	1372	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1373	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1374	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1375	then
	1376
	1377	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1378	if cat /dev/null > $filename
	1379	then
	1380	rm $filename
	1381	else
	1382
	1383	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1384	if [[ ! -d $catalogname ]]
	1385	then
	1386	if mkdir -p $catalogname
	1387	then
	1388	printf "\n\n *** directory:"
	1389	printf "\n $catalogname"
	1390	printf "\n was created\n"
	1391	else
	1392	printf "\n\n +++ OUTPUT-file:"
	1393	printf "\n $filename"
	1394	printf "\n cannot be created, because directory does not exist"
	1395	printf "\n and cannot be created either"
	1396	printf "\n"
	1397	locat=output ; exit
	1398	fi 2>/dev/null
	1399	else
	1400	printf "\n\n +++ OUTPUT-file:"
	1401	printf "\n $filename"
	1402	printf "\n cannot be created, although directory exists"
	1403	printf "\n"
	1404	locat=output ; exit
	1405	fi
	1406	fi 2>/dev/null
	1407	else
	1408
	1409	# ZYKLUSNUMMER FESTSTELLEN
	1410	ls -1 -d $filename > filelist 2>/dev/null
	1411	ls -1 -d $filename.* >> filelist 2>/dev/null
	1412	while read zeile
	1413	do
	1414	cycle=$(print $zeile \| cut -f2 -d".")
	1415	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1416	then
	1417	(( icycle = 1 ))
	1418	else
	1419	(( icycle = $cycle + 1 ))
	1420	fi
	1421	if (( icycle > maxcycle ))
	1422	then
	1423	(( maxcycle = icycle ))
	1424	fi
	1425	done <filelist
	1426	rm filelist
	1427	fi
	1428
	1429	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1430	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1431	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1432	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1433	if [[ "${actionout[$i]}" != a ]]
	1434	then
	1435	if (( maxcycle > 0 ))
	1436	then
	1437	filename=${filename}.$maxcycle
	1438	if cat /dev/null > $filename
	1439	then
	1440	rm $filename
	1441	else
	1442	printf "\n +++ OUTPUT-file:"
	1443	printf "\n $filename"
	1444	printf "\n cannot be created"
	1445	locat=output ; exit
	1446	fi
	1447	fi
	1448	else
	1449	(( maxcycle = maxcycle - 1 ))
	1450	if (( maxcycle > 0 ))
	1451	then
	1452	filename=${filename}.$maxcycle
	1453	fi
	1454	fi
	1455
	1456	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1457	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1458	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1459	pathout[$i]=$filename
	1460	if (( maxcycle > 0 ))
	1461	then
	1462	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1463	else
	1464	frelout[$i]=${fname}${endout[$i]}
	1465	fi
	1466
	1467	fi
	1468	done
	1469
	1470
[260]	1471	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1472	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1473	then
[260]	1474	if [[ "$dvr_inc" = "" ]]
[83]	1475	then
[260]	1476	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1477	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1478	locat=dvr; exit
[83]	1479	fi
[260]	1480	if [[ "$dvr_lib" = "" ]]
[83]	1481	then
[260]	1482	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1483	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1484	locat=dvr; exit
[83]	1485	fi
	1486	fi
	1487
	1488
[1]	1489	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1490	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1491	# UEBERSETZT ZU WERDEN)
	1492	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1493	then
	1494	printf "\n +++ neither main program nor executable defined"
	1495	locat=source; exit
	1496	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1497	then
	1498	printf "\n +++ main program as well as executable defined"
	1499	locat=source; exit
	1500	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1501	then
	1502	do_compile=false
	1503	fi
	1504
	1505
[191]	1506	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1507	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1508	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1509	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1510	then
	1511	rm -rf SOURCES_FOR_RUN_$fname
	1512	mkdir SOURCES_FOR_RUN_$fname
	1513	fi
	1514
	1515
[1]	1516	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1517	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1518	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1519	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1520	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1521	then
	1522
[5]	1523	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1524	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1525
	1526
	1527	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1528	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1529	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1530	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1531	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1532	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1533	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1534	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1535	# GESAMMELT
[5]	1536	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1537	then
	1538
	1539	source_list=""
	1540	cd $source_path
	1541
	1542
	1543	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1544	Names=$(ls -1 *.f90 2>&1)
	1545	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1546	Names=$(ls -1 *.F90 2>&1)
	1547	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1548	Names=$(ls -1 *.F 2>&1)
	1549	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1550	Names=$(ls -1 *.f 2>&1)
	1551	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1552	Names=$(ls -1 *.c 2>&1)
	1553	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1554
	1555
	1556	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1557	for dateiname in $Filenames
	1558	do
	1559	if [[ -w $dateiname ]]
	1560	then
	1561	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1562	then
	1563	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1564	source_list=$source_list"$dateiname "
	1565	fi
	1566	fi
	1567	done
	1568
	1569	cd - > /dev/null
	1570
	1571
[5]	1572	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1573	then
	1574
	1575	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1576	source_list=""
	1577	cd $source_path
	1578
	1579
	1580	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1581	if [[ ! -d .svn ]]
	1582	then
	1583	printf "\n\n +++ source directory"
	1584	printf "\n \"$source_path\" "
	1585	printf "\n is not under control of \"subversion\"."
[306]	1586	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1587	fi
	1588
	1589
	1590	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1591	Filenames=""
[69]	1592	svn status > tmp_mrun
	1593	while read line
[5]	1594	do
	1595	firstc=`echo $line \| cut -c1`
	1596	if [[ $firstc = M \|\| $firstc = "?" ]]
	1597	then
	1598	Name=`echo "$line" \| cut -c8-`
	1599	extension=`echo $Name \| cut -d. -f2`
	1600	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1601	then
	1602	Filenames="$Filenames "$Name
	1603	fi
	1604	fi
[69]	1605	done < tmp_mrun
[5]	1606
	1607
	1608	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1609	for dateiname in $Filenames
	1610	do
	1611	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1612	source_list=$source_list"$dateiname "
	1613	done
	1614
	1615	cd - > /dev/null
	1616
	1617
[1]	1618	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1619	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1620	# VORHANDEN
[5]	1621	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1622	then
	1623
	1624	cd $source_path
	1625
	1626	for filename in $source_list
	1627	do
	1628
	1629	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1630	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1631	then
	1632	printf "\n +++ source code file: $filename"
	1633	printf "\n must not contain (\"/\") "
	1634	locat=source; exit
	1635	fi
	1636
	1637	if [[ ! -f $filename ]]
	1638	then
	1639	printf "\n +++ source code file: $filename"
	1640	printf "\n does not exist"
	1641	locat=source; exit
	1642	else
	1643	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1644	fi
	1645
	1646	done
	1647
	1648	cd - > /dev/null
	1649
	1650	fi
	1651
	1652
	1653	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1654	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1655	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1656	if [[ $restart_run != true ]]
[1]	1657	then
	1658
	1659	if [[ ! -f "$source_path/$mainprog" ]]
	1660	then
	1661	printf "\n\n +++ main program: $mainprog"
	1662	printf "\n does not exist in source directory"
	1663	printf "\n \"$source_path\"\n"
	1664	locat=source; exit
	1665	else
	1666	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1667	then
	1668	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1669	source_list=${mainprog}" $source_list"
	1670	fi
	1671	fi
	1672	fi
	1673
	1674
[211]	1675	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1676	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1677	if [[ "$restart_run" != true ]]
	1678	then
	1679	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1680	if [[ ! -f $makefile ]]
	1681	then
	1682	printf "\n +++ file \"$makefile\" does not exist"
	1683	locat=make; exit
	1684	else
	1685	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1686	fi
	1687	fi
	1688
	1689
[1]	1690	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1691	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1692	then
	1693
	1694	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1695	if [[ ! -d $add_source_path ]]
	1696	then
	1697	printf "\n\n +++ WARNING: additional source code directory"
	1698	printf "\n \"$add_source_path\" "
	1699	printf "\n does not exist or is not a directory."
	1700	printf "\n No source code will be used from this directory!\n"
	1701	add_source_path=""
	1702	sleep 3
	1703	else
	1704
	1705	cd $add_source_path
[211]	1706	found=false
[1]	1707
	1708	Names=$(ls -1 *.f90 2>&1)
	1709	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1710	Names=$(ls -1 *.F90 2>&1)
	1711	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1712	Names=$(ls -1 *.F 2>&1)
	1713	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1714	Names=$(ls -1 *.f 2>&1)
	1715	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1716	Names=$(ls -1 *.c 2>&1)
	1717	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1718
	1719	cd - > /dev/null
	1720	cd SOURCES_FOR_RUN_$fname
	1721
[211]	1722	# COPY MAKEFILE IF EXISTING
	1723	if [[ -f $add_source_path/Makefile ]]
	1724	then
	1725	printf "\n\n *** user Makefile from directory"
	1726	printf "\n \"$add_source_path\" is used \n"
	1727	sleep 1
	1728	cp $add_source_path/Makefile .
	1729	fi
	1730
[1]	1731	for dateiname in $AddFilenames
	1732	do
	1733	if [[ -f $dateiname ]]
	1734	then
	1735	printf "\n +++ source code file \"$dateiname\" found in additional"
	1736	printf "\n source code directory \"$add_source_path\" "
[211]	1737	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1738	printf "\n from directory \"$source_path\"."
[1]	1739	locat=source; exit
	1740	fi
	1741
	1742	cp $add_source_path/$dateiname .
	1743	source_list="$source_list $dateiname"
	1744
[211]	1745	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1746	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1747	then
	1748	printf "\n\n +++ user file \"$dateiname\" "
	1749	printf "\n is not listed in Makefile \n"
	1750	locat=source; exit
	1751	else
	1752
[1]	1753	# Default User-Interface von der Liste entfernen, falls Datei
	1754	# ein User-Interface enthaelt
[211]	1755	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1756	# then
	1757	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1758	# then
	1759	# rm -rf user_interface.f90
	1760	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1761	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1762	# printf "\n since a user-interface is found in file"
	1763	# printf "\n \"$add_source_path/$dateiname\" \n"
	1764	# sleep 3
	1765	# else
	1766	if [[ $found = false ]]
[1]	1767	then
[211]	1768	found=true
	1769	printf "\n\n *** following user file(s) added to the"
	1770	printf " files to be translated:\n "
[1]	1771	fi
[211]	1772	printf "$dateiname "
	1773	sleep 0.5
[1]	1774	fi
	1775	done
[211]	1776	[[ $found = true ]] && printf "\n"
[1]	1777	cd - > /dev/null
	1778	fi
	1779	fi
	1780
	1781
	1782	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1783	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1784	if [[ $restart_run != true && -n $package_list ]]
[1]	1785	then
	1786
	1787	cd $source_path
	1788
	1789	for package in $package_list
	1790	do
	1791
	1792	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1793
	1794	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1795	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1796	# LIEFERT
	1797	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1798
	1799
	1800	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1801	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1802	for source_list_name in $package_source_list
	1803	do
	1804	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1805	then
	1806
	1807	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1808	ending=`echo $source_list_name \| cut -f2 -d.`
	1809	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1810	then
	1811	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1812	source_list="$source_list $source_list_name"
	1813	fi
	1814	fi
	1815	done
	1816	done
	1817
	1818	cd - > /dev/null
	1819	fi
	1820
	1821
	1822	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1823	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1824	# if [[ "$restart_run" != true ]]
	1825	# then
	1826	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1827	# if [[ ! -f $makefile ]]
	1828	# then
	1829	# printf "\n +++ file \"$makefile\" does not exist"
	1830	# locat=make; exit
	1831	# else
	1832	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1833	# fi
	1834	# fi
[1]	1835
	1836	fi # do_compile=true
	1837
	1838
	1839	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1840	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1841	if [[ $do_compile = true ]]
	1842	then
	1843
	1844	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1845	# ZUSAMMENSETZEN
[83]	1846	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1847	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1848	then
[82]	1849	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1850	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1851	then
[82]	1852	cpp_options="$cpp_options -D__nec"
	1853	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1854	then
	1855	cpp_options="$cpp_options -D__lc"
[1]	1856	else
[82]	1857	cpp_options="$cpp_options -D__$localhost"
[1]	1858	fi
[83]	1859
	1860	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1861	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1862	then
[82]	1863	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1864	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1865	else
[82]	1866	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1867	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1868	fi
[83]	1869
	1870	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1871	if [[ -n $package_list ]]
	1872	then
	1873	for package in $package_list
	1874	do
	1875	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1876	then
	1877	if [[ $package != "dvrp_graphics+1PE" ]]
	1878	then
[82]	1879	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1880	else
[82]	1881	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1882	export use_seperate_pe_for_dvrp_output=true
	1883	fi
	1884	else
	1885	if [[ $package != "dvrp_graphics+1PE" ]]
	1886	then
[82]	1887	cpp_options="$cpp_options -D__$package"
[1]	1888	else
[82]	1889	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1890	export use_seperate_pe_for_dvrp_output=true
	1891	fi
	1892	fi
	1893	done
	1894	fi
[83]	1895
	1896	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1897	if [[ -n $cpp_opts ]]
	1898	then
	1899	for popts in $cpp_opts
	1900	do
[82]	1901	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1902	then
	1903	cpp_options="${cpp_options},-D__$popts=__$popts"
	1904	else
	1905	cpp_options="$cpp_options -D__$popts"
	1906	fi
[1]	1907	done
	1908	fi
	1909
	1910	else
	1911
	1912
	1913	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1914	if [[ $do_remote = false ]]
	1915	then
	1916	if [[ ! -f $executable ]]
	1917	then
	1918	printf "\n +++ executable file: $executable"
	1919	printf "\n does not exist"
	1920	locat=executable; exit
	1921	fi
	1922	fi
	1923	fi
	1924
	1925
	1926	# JOBMODUS FESTSTELLEN
	1927	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1928	then
	1929	jobmo=BATCH
	1930	else
	1931	jobmo=INTERACTIVE
	1932	fi
	1933
	1934
	1935	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1936	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1937	if [[ "$compiler_name" = "" ]]
	1938	then
[82]	1939
[220]	1940	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1941	locat=compiler_name; exit
	1942
[1]	1943	fi
	1944
	1945
[251]	1946	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1947	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1948
	1949
	1950
	1951	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1952	kennung=$RANDOM
	1953	if [[ "$tmp_user_catalog" = "" ]]
	1954	then
[312]	1955	if [[ $localhost = ibmh ]]
[1]	1956	then
[312]	1957	tmp_user_catalog=$SCRATCH
[1]	1958	elif [[ $localhost = nech ]]
	1959	then
	1960	tmp_user_catalog=$WRKSHR
	1961	else
	1962	tmp_user_catalog=/tmp
	1963	fi
	1964	fi
	1965	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1966
	1967
	1968	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1969	# BESTIMMEN
	1970	if [[ "$tmp_data_catalog" = "" ]]
	1971	then
[312]	1972	if [[ $localhost = ibmb ]]
[1]	1973	then
	1974	tmp_data_catalog=$WORK/mrun_restart_data
	1975	elif [[ $localhost = nech ]]
	1976	then
	1977	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1978	else
	1979	tmp_data_catalog=/tmp/mrun_restart_data
	1980	fi
	1981	fi
	1982
	1983
	1984	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1985	# ERSETZEN
	1986	if [[ $do_remote = false && $do_compile = true ]]
	1987	then
	1988	eval fopts=\"$fopts\"
	1989	eval lopts=\"$lopts\"
	1990	fi
	1991
	1992
	1993
	1994	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1995	fopts="$fopts $netcdf_inc $dvr_inc"
	1996	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1997	ROPTS="$ropts"
[367]	1998	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	1999	then
	2000	XOPT="-X $numprocs"
	2001	fi
	2002
	2003
	2004
	2005	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	2006	# GRAMM BENOETIGT
	2007	done=false
	2008	while [[ $done = false ]]
	2009	do
	2010	cputime=$cpumax
	2011	if (( $cputime == 0 ))
	2012	then
[246]	2013	if [[ $do_batch = true ]]
	2014	then
	2015	printf "\n +++ cpu-time is undefined"
	2016	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2017	printf "\n >>> "
	2018	read cputime 1>/dev/null 2>&1
	2019	else
	2020	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2021	fi
[1]	2022	else
	2023	done=true
	2024	fi
	2025	cpumax=$cputime
	2026	done
	2027
	2028	(( minuten = cputime / 60 ))
	2029	(( sekunden = cputime - minuten * 60 ))
	2030
	2031
	2032	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2033	if [[ $do_batch = true ]]
	2034	then
	2035	done=false
	2036	while [[ $done = false ]]
	2037	do
	2038	if (( memory == 0 ))
	2039	then
	2040	printf "\n +++ memory demand is undefined"
	2041	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2042	printf "\n >>> "
	2043	read memory 1>/dev/null 2>&1
	2044	else
	2045	done=true
	2046	fi
	2047	done
	2048	fi
	2049
	2050
	2051	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2052	if [[ $do_remote = true && -z $remote_username ]]
	2053	then
	2054	while [[ -z $remote_username ]]
	2055	do
	2056	printf "\n +++ username on remote host \"$host\" is undefined"
	2057	printf "\n >>> Please type username:"
	2058	printf "\n >>> "
	2059	read remote_username
	2060	done
	2061	mc="$mc -u$remote_username"
	2062	fi
	2063
[221]	2064
	2065	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2066	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2067	then
	2068	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2069	fi
	2070
	2071
	2072
[1]	2073	###########################################################################
	2074	# HEADER-AUSGABE
	2075	###########################################################################
	2076
	2077
	2078	calltime=$(date)
	2079	printf "\n"
	2080	# [[ $silent = false ]] && clear
	2081	printf "#--------------------------------------------------------------# \n"
	2082	printf "\| $version$calltime \| \n"
	2083	printf "\| \| \n"
	2084	spalte1="called on:"; spalte2=$localhost_realname
	2085	printf "\| $spalte1$spalte2 \| \n"
	2086	if [[ $local_compile = false ]]
	2087	then
	2088	if [[ $do_remote = true ]]
	2089	then
	2090	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2091	else
	2092	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2093	fi
	2094	else
	2095	spalte1="compiling test only!"; spalte2=""
	2096	fi
	2097	printf "\| $spalte1$spalte2 \| \n"
	2098	if [[ -n $numprocs ]]
	2099	then
	2100	spalte1="number of PEs:"; spalte2=$numprocs
	2101	printf "\| $spalte1$spalte2 \| \n"
	2102	fi
	2103	if [[ -n $tasks_per_node ]]
	2104	then
	2105	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2106	printf "\| $spalte1$spalte2 \| \n"
	2107	fi
	2108	if [[ $threads_per_task != 1 ]]
	2109	then
	2110	spalte1="threads per task:"; spalte2="$threads_per_task"
	2111	printf "\| $spalte1$spalte2 \| \n"
	2112	fi
	2113	printf "\| \| \n"
	2114	if [[ $do_compile = true ]]
	2115	then
[82]	2116	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2117	printf "\| $spalte1$spalte2 \| \n"
[82]	2118	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2119	while [[ "$zeile" != "" ]]
	2120	do
	2121	spalte1=""
	2122	spalte2=$zeile
	2123	printf "\| $spalte1$spalte2 \| \n"
	2124	zeile=$(echo "$zeile" \| cut -c41-)
	2125	done
	2126
[82]	2127	spalte1=compiler-options:; spalte2="$fopts"
[1]	2128	printf "\| $spalte1$spalte2 \| \n"
[82]	2129	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2130	while [[ "$zeile" != "" ]]
	2131	do
	2132	spalte1=""
	2133	spalte2=$zeile
	2134	printf "\| $spalte1$spalte2 \| \n"
	2135	zeile=$(echo "$zeile" \| cut -c41-)
	2136	done
	2137
[82]	2138	spalte1=linker-options:; spalte2=$lopts
[1]	2139	printf "\| $spalte1$spalte2 \| \n"
[82]	2140	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2141	while [[ "$zeile" != "" ]]
	2142	do
	2143	spalte1=""
	2144	spalte2=$zeile
	2145	printf "\| $spalte1$spalte2 \| \n"
	2146	zeile=$(echo "$zeile" \| cut -c41-)
	2147	done
	2148
	2149	spalte1="main program":; spalte2=$mainprog
	2150	printf "\| $spalte1$spalte2 \| \n"
	2151	else
	2152	spalte1=executable:; spalte2=$executable
	2153	printf "\| $spalte1$spalte2 \| \n"
	2154	fi
	2155	printf "\| \| \n"
	2156	spalte1="base name of files":; spalte2=$fname
	2157	printf "\| $spalte1$spalte2 \| \n"
	2158	if [[ $fname != $afname ]]
	2159	then
	2160	spalte1="base name of input files":; spalte2=$afname
	2161	printf "\| $spalte1$spalte2 \| \n"
	2162	fi
	2163	spalte1="INPUT control list":; spalte2=$input_list
	2164	printf "\| $spalte1$spalte2 \| \n"
	2165	spalte1="OUTPUT control list":; spalte2=$output_list
	2166	printf "\| $spalte1$spalte2 \| \n"
	2167
	2168	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2169	then
	2170	spalte1="memory demand / PE":; spalte2="$memory MB"
	2171	printf "\| $spalte1$spalte2 \| \n"
	2172	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2173	printf "\| $spalte1$spalte2 \| \n"
	2174	fi
	2175
	2176	if [[ $do_compile = true ]]
	2177	then
	2178	printf "\| \| \n"
	2179	printf "\| Files to be compiled: \| \n"
	2180	zeile=$source_list
	2181	while [[ "$zeile" != "" ]]
	2182	do
	2183	spalte3=$zeile
	2184	printf "\| $spalte3 \| \n"
	2185	zeile=$(echo "$zeile" \| cut -c61-)
	2186	done
	2187	fi
	2188	printf "#--------------------------------------------------------------#"
	2189
	2190
	2191
	2192	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2193	if [[ $do_trace = true ]]
	2194	then
	2195	(( i = 0 ))
	2196	while (( i < iin ))
	2197	do
	2198	(( i = i + 1 ))
	2199	if (( i == 1 ))
	2200	then
	2201	printf "\n\n >>> INPUT-file assignments:\n"
	2202	fi
	2203	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2204	done
	2205	(( i = 0 ))
	2206	while (( i < iout ))
	2207	do
	2208	(( i = i + 1 ))
	2209	if (( i == 1 ))
	2210	then
	2211	printf "\n\n >>> OUTPUT-file assignments:\n"
	2212	fi
	2213	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2214	done
	2215	(( i = 0 ))
	2216	while (( i < iic ))
	2217	do
	2218	(( i = i + 1 ))
	2219	if (( i == 1 ))
	2220	then
	2221	printf "\n\n >>> INPUT-commands:\n"
	2222	fi
	2223	printf "\n ${in_command[$i]}"
	2224	done
	2225	(( i = 0 ))
	2226	while (( i < ioc ))
	2227	do
	2228	(( i = i + 1 ))
	2229	if (( i == 1 ))
	2230	then
	2231	printf "\n\n >>> OUTPUT-commands:\n"
	2232	fi
	2233	printf "\n ${out_command[$i]}"
	2234	done
	2235	fi
	2236
	2237
	2238	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2239	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2240	then
	2241	antwort=dummy
	2242	printf "\n\n"
	2243	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2244	do
	2245	printf " >>> everything o.k. (y/n) ? "
	2246	read antwort
	2247	done
	2248	if [[ $antwort = n \|\| $antwort = N ]]
	2249	then
	2250	locat=user_abort; (( iec = 0 )); exit
	2251	fi
	2252	if [[ $do_batch = true ]]
	2253	then
	2254	printf " >>> batch-job will be created and submitted"
	2255	else
	2256	if [[ $local_compile = false ]]
	2257	then
	2258	printf " >>> MRUN will now continue to execute on this machine"
	2259	else
	2260	printf " >>> a test compilation will now be carried out on this machine"
	2261	fi
	2262	fi
	2263	fi
	2264
	2265
	2266
	2267
	2268	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2269	# CHENDE AKTIONEN DURCHGEFUEHRT
	2270	if [[ $do_batch = false ]]
	2271	then
	2272
	2273
	2274	# TEMPORAEREN KATALOG ERZEUGEN
	2275	mkdir -p $TEMPDIR
	2276	chmod go+rx $TEMPDIR
	2277	tmpcreate=true
	2278
	2279
	2280	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2281	# TEMPORAERES VERZEICHNIS KOPIEREN
	2282	if [[ $do_compile = true ]]
	2283	then
	2284
	2285	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2286	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2287	if [[ $localhost = nech ]]
	2288	then
	2289	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2290	if mkdir -p $TEMPDIR_COMPILE
	2291	then
	2292	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2293	printf "\n is generated as temporary directory for cross compiling\n"
	2294	else
	2295	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2296	printf "\n needed for cross compilation failed"
	2297	locat=compile
	2298	exit
	2299	fi
	2300	else
	2301	TEMPDIR_COMPILE=$TEMPDIR
	2302	fi
	2303
	2304
[82]	2305	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2306	line=""
	2307	grep "%depository_path" $config_file > tmp_mrun
	2308	while read line
	2309	do
	2310	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2311	then
	2312	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2313	then
[82]	2314	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2315	fi
[82]	2316	fi
	2317	done < tmp_mrun
[1]	2318
[82]	2319	line=""
	2320	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2321	while read line
	2322	do
	2323	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2324	then
[211]	2325	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2326	then
	2327	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2328	fi
[1]	2329	fi
[82]	2330	done < tmp_mrun
[1]	2331
[82]	2332	if [[ "$local_depository_path" = "" ]]
	2333	then
	2334	if [[ "$global_depository_path" != "" ]]
[1]	2335	then
[82]	2336	local_depository_path=$global_depository_path
[1]	2337	else
[82]	2338	printf "\n\n +++ no depository path found in configuration file"
	2339	printf "\n for local host \"$localhost\" "
	2340	printf "\n please set \"\%depository_path\" in configuration file\n"
	2341	locat=config_file; exit
[1]	2342	fi
[82]	2343	fi
	2344	eval local_depository_path=$local_depository_path
[215]	2345	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2346	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2347
[215]	2348
[82]	2349	basename=`print $mainprog \| cut -f1 -d"."`
	2350	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2351	if [[ ! -f $make_depository ]]
	2352	then
	2353	printf "\n"
	2354	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2355	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2356	else
	2357	cp $make_depository $TEMPDIR_COMPILE
[1]	2358	cd $TEMPDIR_COMPILE
[82]	2359	tar -xf $make_depository > /dev/null 2>&1
[1]	2360	cd - > /dev/null
	2361	fi
[82]	2362
	2363	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2364
	2365	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2366	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2367	# MAKEFILE EINTRAGEN
[211]	2368	# cd $TEMPDIR_COMPILE
	2369	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2370	# if [[ "$interface_file" != "" ]]
	2371	# then
	2372	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2373	# mv Makefile Makefile_old
	2374	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2375	# fi
	2376	# cd - > /dev/null
[1]	2377	else
	2378	cp $executable ${TEMPDIR}/a.out
	2379	fi
	2380
	2381
	2382	# WECHSEL IN TEMPORAEREN KATALOG
	2383	cd $TEMPDIR
	2384	printf "\n *** changed to temporary directory: $TEMPDIR"
	2385
	2386
	2387	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2388	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2389	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2390	# ERMITTELN
	2391	(( i = 0 ))
	2392	while (( i < iout ))
	2393	do
	2394	(( i = i + 1 ))
	2395	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2396	then
	2397	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2398	else
	2399	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2400	fi
	2401	done
	2402
	2403
	2404	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2405	if [[ $do_compile = true ]]
	2406	then
	2407
	2408
	2409	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2410	printf "\n\n\n *** compilation starts \n$striche\n"
	2411	printf " *** compilation with make using following options:\n"
[211]	2412	printf " make depository: $make_depository"
[82]	2413	printf " compilername: $compiler_name\n"
	2414	printf " options: $fopts\n"
	2415	printf " preprocessor-directives: $cpp_options \n"
	2416	printf " linker-options: $lopts \n"
	2417	printf " source code files: $source_list \n"
	2418
	2419	if [[ $localhost = nech ]]
[1]	2420	then
[82]	2421	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2422	cp $TEMPDIR_COMPILE/a.out .
	2423	[[ $? != 0 ]] && compile_error=true
	2424	rm -rf $TEMPDIR_COMPILE
[312]	2425	elif [[ $localhost = ibmh ]]
	2426	then
[325]	2427	printf " compiler is called via ssh on \"plogin1\" \n"
	2428	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2429	[[ ! -f a.out ]] && compile_error=true
	2430	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2431	elif [[ $localhost = lcsgib ]]
	2432	then
[221]	2433	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[372]	2434	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2435	[[ ! -f a.out ]] && compile_error=true
	2436	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2437	elif [[ $localhost = lcsgih ]]
	2438	then
[221]	2439	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2440	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2441	[[ ! -f a.out ]] && compile_error=true
	2442	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2443	else
[118]	2444	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2445	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2446	fi
[1]	2447
	2448	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2449	then
	2450	printf "\n +++ error occured while compiling or linking"
	2451	locat=compile
[181]	2452
[182]	2453	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2454	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2455	# then
[181]	2456	exit
[197]	2457	# else
	2458	# locat=normal
	2459	# fi
[1]	2460	else
	2461	printf "$striche\n *** compilation finished \n"
	2462	fi
	2463	fi
	2464
	2465
	2466	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2467	if [[ $local_compile = true ]]
	2468	then
	2469	cd $HOME
	2470	rm -rf $TEMPDIR
	2471	locat=local_compile; exit
	2472	fi
	2473
	2474
	2475	# BEREITSTELLEN DER INPUT-DATEIEN
	2476	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2477	(( i = 0 ))
	2478	while (( i < iin ))
	2479	do
	2480	(( i = i + 1 ))
	2481	if (( i == 1 ))
	2482	then
	2483	printf "\n\n *** providing INPUT-files:\n$striche"
	2484	fi
	2485
	2486
	2487	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2488	if [[ "${transin[$i]}" = unavailable ]]
	2489	then
	2490	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2491	then
	2492	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2493	printf "\n is not available!"
	2494	else
	2495	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2496	printf "\n is not available!"
	2497	fi
	2498	continue
	2499	fi
	2500
	2501	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2502	files_for_pes=false; datentyp=file
	2503	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2504	then
	2505	files_for_pes=true; datentyp=directory
	2506	actionin[$i]=""
	2507	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2508	then
	2509	actionin[$i]=""
	2510	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2511	then
	2512	files_for_pes=true; datentyp=directory
	2513	actionin[$i]="ar"
	2514	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2515	then
	2516	actionin[$i]="ar"
	2517	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2518	then
	2519	files_for_pes=true; datentyp=directory
	2520	actionin[$i]="fl"
	2521	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2522	then
	2523	actionin[$i]="fl"
	2524	fi
	2525
	2526	if [[ $files_for_pes = true ]]
	2527	then
	2528	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2529	else
	2530	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2531	fi
	2532
	2533	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2534	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2535	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2536	# SERVER ZU HOLEN
	2537	if [[ "${actionin[$i]}" = fl ]]
	2538	then
	2539	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2540	if [[ $files_for_pes = false ]]
	2541	then
	2542	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2543	then
	2544	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2545	got_tmp[$i]=true
	2546	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2547	then
	2548	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2549	printf "\n *** trying to use backup copy in \"$WORK\" "
	2550	cp $WORK/${frelin[$i]} ${localin[$i]}
	2551	else
	2552	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2553	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2554	printf "\n *** trying to get copy from archive"
	2555	actionin[$i]=ar
	2556	fi
	2557	else
	2558	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2559	then
	2560	mkdir ${localin[$i]}
[149]	2561	cd $tmp_data_catalog/${frelin[$i]}
	2562	for file in $(ls *)
	2563	do
	2564	ln $file $TEMPDIR/${localin[$i]}
	2565	done
	2566	cd $TEMPDIR
[1]	2567	got_tmp[$i]=true
	2568	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2569	then
	2570	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2571	printf "\n *** trying to use backup copy in \"$WORK\" "
	2572	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2573	else
	2574	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2575	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2576	printf "\n *** trying to get copy from archive"
	2577	actionin[$i]=ar
	2578	fi
	2579	fi
	2580	fi
	2581
	2582
	2583	# DATEI LIEGT AUF ARCHIV-SERVER
	2584	if [[ "${actionin[$i]}" = ar ]]
	2585	then
	2586
	2587	if [[ $files_for_pes = false ]]
	2588	then
	2589	printf "\n file will be restored from archive-system ($archive_system)!"
	2590	else
	2591	printf "\n directory will be restored from archive-system ($archive_system)!"
	2592	fi
	2593
	2594	file_restored=false
	2595
	2596	if [[ $archive_system = asterix ]]
	2597	then
	2598	do_stagein=true
	2599	(( stagein_anz = 0 ))
	2600	while [[ $do_stagein = true ]]
	2601	do
	2602	if [[ $files_for_pes = false ]]
	2603	then
	2604	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2605	else
	2606	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2607	fi
	2608	cat STAGEIN_OUTPUT
	2609	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2610	then
	2611	file_restored=true
	2612	do_stagein=false
	2613	else
	2614	(( stagein_anz = stagein_anz + 1 ))
	2615	if (( stagein_anz == 10 ))
	2616	then
	2617	printf "\n +++ stagein stoped after 10 tries"
	2618	locat=stage
	2619	exit
	2620	fi
	2621	printf "\n +++ restoring from archive failed, trying again:"
	2622	sleep 900
	2623	fi
	2624	done
	2625	elif [[ $archive_system = DMF ]]
	2626	then
	2627	if [[ $files_for_pes = false ]]
	2628	then
	2629	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2630	locat=DMF
	2631	exit
	2632	else
	2633	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2634	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2635	file_restored=true
	2636	fi
	2637	elif [[ $archive_system = tivoli ]]
	2638	then
	2639	if [[ $files_for_pes = false ]]
	2640	then
	2641	if [[ $localhost = ibmh ]]
	2642	then
	2643	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2644	else
	2645	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2646	fi
	2647	else
	2648	(( inode = 0 ))
	2649	while (( inode < nodes ))
	2650	do
	2651	if [[ $localhost = ibmh ]]
	2652	then
	2653	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2654	else
	2655	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2656	fi
	2657	(( inode = inode + 1 ))
	2658	done
	2659	fi
	2660	file_restored=true
	2661	elif [[ $archive_system = ut ]]
	2662	then
	2663	if [[ $files_for_pes = false ]]
	2664	then
	2665	cp $UT/${frelin[$i]} .
	2666	else
	2667	(( inode = 0 ))
	2668	while (( inode < nodes ))
	2669	do
	2670	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2671	(( inode = inode + 1 ))
	2672	done
	2673	fi
	2674	file_restored=true
	2675	else
	2676	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2677	locat=rearchive
	2678	exit
	2679	fi
	2680
	2681	if [[ $file_restored = true ]]
	2682	then
	2683
	2684	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2685	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2686	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2687	if [[ $files_for_pes = false ]]
	2688	then
	2689	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2690	else
	2691	mkdir $tmp_data_catalog/${frelin[$i]}
	2692	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2693	fi
	2694	got_tmp[$i]=true
	2695
	2696	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2697	mv ${frelin[$i]} ${localin[$i]}
	2698
	2699	fi
	2700	fi
	2701
	2702
	2703	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2704	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2705	then
	2706
	2707	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2708	then
	2709
	2710	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2711	printf "\n file will be provided for $numprocs processors"
	2712	mkdir ${localin[$i]}
	2713	ival=$numprocs
	2714	(( ii = 0 ))
	2715	while (( ii <= ival-1 ))
	2716	do
	2717	if (( ii < 10 ))
	2718	then
	2719	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2720	elif (( ii < 100 ))
	2721	then
	2722	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2723	elif (( ii < 1000 ))
	2724	then
	2725	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2726	else
	2727	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2728	fi
	2729	(( ii = ii + 1 ))
	2730	done
	2731
	2732	else
	2733
	2734	if [[ $files_for_pes = true ]]
	2735	then
	2736
	2737	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2738	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2739	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2740	# PER MOVE UMBENANNT WERDEN
	2741	printf "\n providing $numprocs files for the respective processors"
	2742	mkdir ${localin[$i]}
[183]	2743	if [[ $link_local_input = true ]]
	2744	then
	2745	printf " using ln -f\n"
	2746	cd ${absnamein[$i]}
	2747	for file in $(ls *)
	2748	do
	2749	ln -f $file ${localin[$i]}
	2750	done
	2751	cd $TEMPDIR
	2752	fi
	2753	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2754	if [[ ! -f "${localin[$i]}/_0000" ]]
	2755	then
	2756	if [[ $link_local_input = true ]]
	2757	then
	2758	printf " ln failed for .../_0000, using cp...\n"
	2759	fi
	2760	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2761	fi
[1]	2762
	2763	else
	2764	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2765	if [[ $link_local_input = true ]]
	2766	then
	2767	printf " using ln -f\n"
	2768	ln -f ${absnamein[$i]} ${localin[$i]}
	2769	fi
	2770	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2771	if [[ ! -f "${localin[$i]}" ]]
	2772	then
	2773	if [[ $link_local_input = true ]]
	2774	then
	2775	printf " ln failed, using cp...\n"
	2776	fi
	2777	cp ${absnamein[$i]} ${localin[$i]}
	2778	fi
[1]	2779	fi
	2780	fi
	2781	fi
	2782
	2783	done
	2784	if (( i != 0 ))
	2785	then
	2786	printf "\n$striche\n *** all INPUT-files provided \n"
	2787	fi
	2788
	2789
	2790	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2791	(( i = 0 ))
	2792	while (( i < iic ))
	2793	do
	2794	(( i = i + 1 ))
	2795	if (( i == 1 ))
	2796	then
	2797	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2798	fi
	2799	printf "\n >>> ${in_command[$i]}"
	2800	eval ${in_command[$i]}
	2801	if (( i == iic ))
	2802	then
	2803	printf "\n$striche\n"
	2804	fi
	2805	done
	2806
	2807
	2808	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2809	cpurest=${cpumax}.
	2810
	2811
[260]	2812	# START DVR STREAMING SERVER
	2813	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2814	then
	2815	if [[ "$dvr_server" != "" ]]
	2816	then
	2817
	2818	printf "\n\n *** preparing the dvr streaming server configuration file"
	2819
	2820	# Check, if a dvr server is already running
	2821	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2822	if [[ "$running_dvrserver_id" != "" ]]
	2823	then
	2824
[261]	2825	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2826	printf "\n This server is used instead starting a new one!"
[261]	2827	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2828
	2829	else
	2830
	2831	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2832	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2833	then
	2834	cp ${PALM_BIN}/.dvrserver.config .
	2835
	2836	# Entering the BASEDIR, UID and GID into this file
	2837	user_id=`id -u`
	2838	group_id=`id -g`
	2839	# & is needed as seperator, because TEMPDIR contains /
	2840	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2841	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2842	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2843	mv .dvrserver.3 .dvrserver.config
	2844	rm .dvrserver.1 .dvrserver.2
	2845
	2846	# Start dvr server in background, get his id and print on terminal
	2847	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2848	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2849	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2850	local_dvrserver_running=.TRUE.
	2851	else
	2852	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2853	printf "\n \"$PALM_BIN\" "
	2854	locat=dvr
	2855	exit
	2856	fi
	2857
	2858	fi
	2859
	2860	else
	2861	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2862	fi
	2863	fi
	2864
	2865
	2866	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2867	# LESEN VON PALM)
	2868	cat > ENVPAR << %%END%%
	2869	&envpar run_identifier = '$fname', host = '$localhost',
	2870	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2871	maximum_cpu_time_allowed = ${cpumax}.,
	2872	revision = '$global_revision',
	2873	local_dvrserver_running = $local_dvrserver_running /
	2874
	2875	%%END%%
	2876
	2877
[1]	2878	# PROGRAMMSTART
	2879	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2880	PATH=$PATH:$TEMPDIR
	2881
[359]	2882	# MPI debug option (argument checking, slows down execution due to increased latency)
	2883	if [[ "$mpi_debug" = true ]]
	2884	then
	2885	export MPI_CHECK_ARGS=1
	2886	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2887	fi
	2888
[1]	2889	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2890	then
	2891	if [[ "$ENVIRONMENT" = BATCH ]]
	2892	then
[211]	2893	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2894	then
	2895	printf "\n +++ debug is allowed in interactive mode only"
	2896	locat=debug
	2897	exit
	2898	fi
[1]	2899	fi
[5]	2900	if [[ $localhost = decalpha ]]
[1]	2901	then
	2902	dxladebug a.out
	2903	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2904	then
	2905
	2906	# SETUP THE IBM MPI ENVIRONMENT
	2907	export MP_SHARED_MEMORY=yes
	2908	export AIXTHREADS_SCOPE=S
	2909	export OMP_NUM_THREADS=$threads_per_task
	2910	export AUTHSTATE=files
	2911	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2912
	2913	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2914	export MP_ADAPTER_USE=shared
	2915	export MP_CPU_USE=multiple
	2916	export MP_TIMEOUT=1200
	2917
	2918	unset MP_TASK_AFFINITY
	2919
	2920	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2921	#(( ii = 1 ))
	2922	#while (( ii <= $numprocs ))
	2923	#do
	2924	# echo $localhost_realname >> hostfile
	2925	# (( ii = ii + 1 ))
	2926	#done
	2927	#export MP_HOSTFILE=hostfile
	2928
	2929	if [[ "$LOADLBATCH" = yes ]]
	2930	then
	2931	totalview poe a.out $ROPTS
	2932	else
	2933	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2934	export TVDSVRLAUNCHCMD=ssh
	2935	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2936	fi
[211]	2937	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2938	then
	2939	# CURRENTLY NO DEBUGGER ON LCSGI
	2940	if [[ $run_coupled_model = true ]]
	2941	then
	2942	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2943	locat=debug
	2944	exit
[223]	2945	else
	2946	echo "no_coupling" > runfile_atmos
[211]	2947	fi
	2948	(( ii = $numprocs / $threads_per_task ))
	2949	export OMP_NUM_THREADS=$threads_per_task
	2950	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2951	if [[ $threads_per_task != 1 ]]
	2952	then
	2953	printf "\n threads per task: $threads_per_task"
	2954	fi
	2955	printf "\n\n"
[223]	2956	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2957	then
	2958	# export MPI_LAUNCH_TIMEOUT=360
	2959	if [[ "$totalview" = true ]]
	2960	then
	2961	printf "\n running totalview debugger"
	2962	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2963	else
	2964	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2965	fi
	2966	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2967	then
	2968	# ulimit -s 300000 # A too large stack size causes problems
	2969	# export MV2_NUM_PORTS=2
	2970	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2971	if [[ "$totalview" = true ]]
	2972	then
	2973	printf "\n running totalview debugger"
	2974	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2975	else
	2976	mpiexec ./a.out $ROPTS < runfile_atmos
	2977	fi
[223]	2978	fi
[1]	2979	else
	2980	printf "\n +++ no debug available on \"$localhost\" "
	2981	printf "\n or not implemented in mrun so far"
	2982	locat=debug
	2983	exit
	2984	fi
	2985	else
	2986	if [[ -n $numprocs ]]
	2987	then
	2988	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2989	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2990	then
	2991	# SETUP THE IBM MPI ENVIRONMENT
[312]	2992	if [[ $host != ibmh ]]
	2993	then
	2994	export MP_SHARED_MEMORY=yes
	2995	export AIXTHREAD_SCOPE=S
	2996	export OMP_NUM_THREADS=$threads_per_task
	2997	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2998	export AUTHSTATE=files
	2999	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	3000	# export MP_PRINTENV=yes
[1]	3001
[312]	3002	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	3003	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	3004	export MP_WAIT_MODE=poll
	3005	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	3006	fi
[1]	3007	if [[ "$LOADLBATCH" = yes ]]
	3008	then
	3009	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3010	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3011	then
[102]	3012	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3013	else
[343]	3014	if [[ $run_coupled_model = false ]]
	3015	then
	3016	if [[ "$ocean_file_appendix" = true ]]
	3017	then
	3018	echo "precursor_ocean" > runfile_atmos
	3019	else
	3020	echo "precursor_atmos" > runfile_atmos
	3021	fi
	3022	else
	3023	(( iia = $numprocs_atmos / $threads_per_task ))
	3024	(( iio = $numprocs_ocean / $threads_per_task ))
	3025	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3026	printf "\n using $coupled_mode coupling"
	3027	printf "\n\n"
	3028	echo "coupled_run $iia $iio" > runfile_atmos
	3029	fi
	3030	poe ./a.out $ROPTS < runfile_atmos
[1]	3031	fi
	3032	else
	3033	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3034	then
[102]	3035	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3036	elif [[ $localhost = ibmy ]]
	3037	then
	3038	if [[ -f $hostfile ]]
	3039	then
	3040	cp $hostfile hostfile
	3041	else
	3042	(( ii = 1 ))
	3043	while (( ii <= $numprocs ))
	3044	do
	3045	echo $localhost_realname >> hostfile
	3046	(( ii = ii + 1 ))
	3047	done
	3048	fi
	3049	export MP_HOSTFILE=hostfile
[331]	3050	if [[ $run_coupled_model = false ]]
	3051	then
	3052	if [[ "$ocean_file_appendix" = true ]]
	3053	then
	3054	echo "precursor_ocean" > runfile_atmos
	3055	else
	3056	echo "precursor_atmos" > runfile_atmos
	3057	fi
	3058	else
	3059	(( iia = $numprocs_atmos / $threads_per_task ))
	3060	(( iio = $numprocs_ocean / $threads_per_task ))
	3061	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3062	printf "\n using $coupled_mode coupling"
	3063	printf "\n\n"
	3064	echo "coupled_run $iia $iio" > runfile_atmos
	3065	fi
	3066	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3067
[1]	3068	else
	3069	if [[ "$host_file" = "" ]]
	3070	then
	3071	printf "\n +++ no hostfile given in configuration file"
	3072	locat=config_file
	3073	exit
	3074	else
	3075	eval host_file=$host_file
	3076	fi
	3077	export MP_HOSTFILE=$host_file
[102]	3078	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3079	fi
	3080	fi
[251]	3081	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3082	then
	3083	(( ii = nodes ))
	3084	if [[ $ii = 1 ]]
	3085	then
	3086	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3087	export MPIPROGINF=YES
[61]	3088	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3089	echo "*** execution on single node with mpirun"
[102]	3090	mpirun -np $numprocs ./a.out $ROPTS
[1]	3091	else
	3092	(( i = 0 ))
	3093	while (( i < ii ))
	3094	do
	3095	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3096	(( i = i + 1 ))
	3097	done
	3098
	3099	echo "#!/bin/sh" > mpi_exec_shell
	3100	echo " " >> mpi_exec_shell
	3101	echo "set -u" >> mpi_exec_shell
	3102	echo "F_ERRCNT=0" >> mpi_exec_shell
	3103	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3104	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3105	echo "cpurest=$cpurest" >> mpi_exec_shell
	3106	echo "fname=$fname" >> mpi_exec_shell
	3107	echo "localhost=$localhost" >> mpi_exec_shell
	3108	echo "return_addres=$return_addres" >> mpi_exec_shell
	3109	echo "return_username=$return_username" >> mpi_exec_shell
	3110	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3111	echo "write_binary=$write_binary" >> mpi_exec_shell
	3112	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3113	echo " " >> mpi_exec_shell
	3114	echo "export F_ERRCNT" >> mpi_exec_shell
	3115	echo "export MPIPROGINV" >> mpi_exec_shell
	3116	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3117	echo "export cpurest" >> mpi_exec_shell
	3118	echo "export fname" >> mpi_exec_shell
	3119	echo "export localhost" >> mpi_exec_shell
	3120	echo "export return_addres" >> mpi_exec_shell
	3121	echo "export return_username" >> mpi_exec_shell
	3122	echo "export tasks_per_node" >> mpi_exec_shell
	3123	echo "export write_binary" >> mpi_exec_shell
	3124	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3125	echo " " >> mpi_exec_shell
[102]	3126	echo "exec ./a.out" >> mpi_exec_shell
[1]	3127
	3128	chmod u+x mpi_exec_shell
	3129	export MPIPROGINF=YES
	3130	mpirun -f multinode_config &
	3131	wait
	3132
	3133	fi
[82]	3134	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3135	then
	3136
	3137	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3138	# DOES NOT EXIST
[179]	3139	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3140	then
[179]	3141	if [[ -f $hostfile ]]
	3142	then
	3143	cp $hostfile hostfile
	3144	else
	3145	(( ii = 1 ))
	3146	while (( ii <= $numprocs / $threads_per_task ))
	3147	do
	3148	echo $localhost_realname >> hostfile
	3149	(( ii = ii + 1 ))
	3150	done
	3151	fi
	3152	eval zeile=\"`head -n $ii hostfile`\"
	3153	printf "\n *** running on: $zeile"
[1]	3154	fi
[179]	3155
[1]	3156	(( ii = $numprocs / $threads_per_task ))
	3157	export OMP_NUM_THREADS=$threads_per_task
[246]	3158	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3159	if [[ $threads_per_task != 1 ]]
	3160	then
	3161	printf "\n threads per task: $threads_per_task"
	3162	fi
[102]	3163	if [[ $run_coupled_model = false ]]
[1]	3164	then
[291]	3165	if [[ "$ocean_file_appendix" = true ]]
	3166	then
	3167	echo "precursor_ocean" > runfile_atmos
	3168	else
	3169	echo "precursor_atmos" > runfile_atmos
	3170	fi
[102]	3171	printf "\n\n"
[179]	3172	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3173	then
[221]	3174	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3175	then
[366]	3176	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3177	# export MPI_DSM_DISTRIBUTE=1
	3178	# MPI_DSM_CPULIST: pin MPI processes to cores
[377]	3179	if [[ $use_openmp = false ]]
	3180	then
	3181	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3182	fi
[366]	3183	# MPI_IB_RAILS: use both IB rails on ICE2
	3184	export MPI_BUFS_PER_HOST=512
	3185	export MPI_IB_RAILS=2
[369]	3186	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3187	export MPI_CONNECTIONS_THRESHOLD=8192
[223]	3188	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[388]	3189
	3190	# next is test for openmp usage
	3191	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
[221]	3192	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3193	then
[374]	3194	export MV2_NUM_PORTS=2
[376]	3195	# The default setting of MV2_CPU_MAPPING gives best results
	3196	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[325]	3197	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3198	fi
[179]	3199	elif [[ $host = lcxt4 ]]
	3200	then
[223]	3201	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3202	else
[223]	3203	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3204	fi
[1]	3205	else
[164]	3206
[206]	3207	# currently there is no full MPI-2 support on ICE and XT4
	3208	(( iia = $numprocs_atmos / $threads_per_task ))
	3209	(( iio = $numprocs_ocean / $threads_per_task ))
	3210	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3211	printf "\n using $coupled_mode coupling"
[102]	3212	printf "\n\n"
[164]	3213
[206]	3214	if [[ $coupled_mode = "mpi2" ]]
[164]	3215	then
[206]	3216	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3217	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3218	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3219	then
[197]	3220
[221]	3221	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3222	then
	3223	# export MPI_LAUNCH_TIMEOUT=360
	3224	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3225	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3226	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3227	then
	3228	# ulimit -s 300000 # A too large stack size causes problems
	3229	# export MV2_NUM_PORTS=2
	3230	# export MV2_CPU_MAPPING=0:1:2:3
	3231	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3232	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3233	fi
[197]	3234
[206]	3235	elif [[ $host = lcxt4 ]]
	3236	then
[197]	3237
[206]	3238	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3239	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3240
	3241	else
	3242	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3243	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3244	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3245	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3246	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3247	fi
	3248	wait
	3249
[164]	3250	else
	3251
[206]	3252	echo "coupled_run $iia $iio" > runfile_atmos
	3253	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3254	then
	3255
[221]	3256	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3257	then
	3258	# export MPI_LAUNCH_TIMEOUT=360
	3259	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3260	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3261	then
	3262	# ulimit -s 300000 # A too large stack size causes problems
	3263	# export MV2_NUM_PORTS=2
	3264	# export MV2_CPU_MAPPING=0:1:2:3
	3265	mpiexec ./a.out $ROPTS < runfile_atmos
	3266	fi
[206]	3267
	3268	elif [[ $host = lcxt4 ]]
	3269	then
	3270
	3271	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3272
[367]	3273	elif [[ $host = lck ]]
	3274	then
	3275	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3276	fi
	3277	wait
[164]	3278	fi
[102]	3279
	3280	# if [[ $scirocco = true ]]
	3281	# then
	3282	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3283	# else
	3284	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3285	# fi
[206]	3286	fi
[1]	3287	elif [[ $host = decalpha ]]
	3288	then
[102]	3289	dmpirun -np $numprocs a.out $ROPTS
[1]	3290	elif [[ $host = lctit ]]
	3291	then
	3292	export runfile=runfile.$kennung
	3293
	3294	echo "cd $PWD" > $runfile
	3295	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3296	echo "export cpurest=$cpurest" >> $runfile
	3297	echo "export fname=$fname" >> $runfile
	3298	echo "export localhost=$localhost" >> $runfile
	3299	echo "export return_addres=$return_addres" >> $runfile
	3300	echo "export return_username=$return_username" >> $runfile
	3301	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3302	echo "export write_binary=$write_binary" >> $runfile
	3303	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3304	echo "./a.out" >> $runfile
	3305	chmod u+x $runfile
	3306
	3307	if [[ "$QUEUE" = interactive ]]
	3308	then
[102]	3309	mpirun -np $numprocs a.out $ROPTS
[1]	3310	else
[127]	3311	(( mem_tsubame = $memory / 1024.0 ))
	3312	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3313	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3314	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3315	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3316	fi
	3317
	3318	rm $runfile
	3319	else
[102]	3320	mpprun -n $numprocs a.out $ROPTS
[1]	3321	fi
	3322	[[ $? != 0 ]] && execution_error=true
	3323
	3324
	3325	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3326	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3327	then
	3328	apprentice
	3329	fi
	3330	else
[102]	3331	a.out $ROPTS
[1]	3332	fi
	3333	fi
	3334	if [[ $? != 0 \|\| $execution_error = true ]]
	3335	then
	3336
	3337	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3338	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3339	printf "\n +++ runtime error occured"
	3340	locat=execution
	3341	exit
	3342	else
[102]	3343	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3344	printf "\n$striche\n *** execution finished \n"
[260]	3345
[261]	3346	# Stop the dvr streaming server and process the dvr output in order
	3347	# to create dvrs- and html-files containing all streams
[260]	3348	if [[ "$dvrserver_id" != "" ]]
	3349	then
	3350	kill $dvrserver_id
	3351	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3352
[262]	3353	# If there is a directory, data have been output by the
	3354	# streaming server. Otherwise, user has chosen dvrp_output=local
	3355	if [[ -d DATA_DVR ]]
	3356	then
[261]	3357
[262]	3358	# Add the current dvr configuration file to the dvr output
	3359	# directory
	3360	cp .dvrserver.config DATA_DVR
	3361
	3362	# Process the dvr output (option -s for also generating
	3363	# sequence mode data)
	3364	process_dvr_output -d DATA_DVR -f $fname -s
	3365
	3366	else
	3367
	3368	# Process the local output
	3369	process_dvr_output -l -d DATA_DVR -f $fname
	3370
	3371	fi
	3372
	3373	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3374	then
	3375
	3376	# Process dvr output generated in local mode (dvrp_output=local)
	3377	process_dvr_output -l -d DATA_DVR -f $fname
	3378
[260]	3379	fi
[1]	3380	fi
	3381
	3382
	3383
	3384	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3385	(( i = 0 ))
	3386	while (( i < ioc ))
	3387	do
	3388	(( i = i + 1 ))
	3389	if (( i == 1 ))
	3390	then
	3391	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3392	fi
	3393	printf "\n >>> ${out_command[$i]}"
	3394	eval ${out_command[$i]}
	3395	if (( i == ioc ))
	3396	then
	3397	printf "\n$striche\n"
	3398	fi
	3399	done
	3400
	3401
	3402	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3403	if [[ $do_trace = true ]]
	3404	then
	3405	printf "\n\n"
	3406	ls -al
	3407	fi
	3408
	3409
	3410
	3411	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3412	(( i = 0 ))
	3413	while (( i < iout ))
	3414	do
	3415	(( i = i + 1 ))
	3416	if (( i == 1 ))
	3417	then
	3418	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3419	fi
	3420
	3421	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3422	files_for_pes=false; filetyp=file
	3423	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3424	then
	3425	files_for_pes=true; filetyp=directory
	3426	actionout[$i]=""
	3427	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3428	then
	3429	actionout[$i]=""
	3430	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3431	then
	3432	files_for_pes=true; filetyp=directory
	3433	actionout[$i]="ar"
	3434	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3435	then
	3436	actionout[$i]="ar"
	3437	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3438	then
	3439	files_for_pes=true; filetyp=directory
	3440	actionout[$i]="fl"
	3441	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3442	then
	3443	actionout[$i]="fl"
	3444	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3445	then
	3446	files_for_pes=true; filetyp=directory
	3447	actionout[$i]="tr"
	3448	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3449	then
	3450	actionout[$i]="tr"
	3451	fi
	3452
	3453	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3454	then
	3455	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3456	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3457	then
	3458	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3459	else
	3460
	3461
	3462	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3463	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3464	# REMOTE-RECHNUNGEN
	3465	if [[ "${actionout[$i]}" = tr ]]
	3466	then
	3467	if [[ $localhost != $fromhost ]]
	3468	then
	3469	if [[ $files_for_pes = false ]]
	3470	then
	3471	cps=""
	3472	cst=""
	3473	else
	3474	cps=-c
	3475	cst="/"
	3476	fi
[325]	3477	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3478	then
	3479
	3480	# TRANSFER IN EIGENSTAENDIGEM JOB
	3481	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3482	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3483	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3484	if [[ $files_for_pes = false ]]
	3485	then
	3486	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3487	else
	3488	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3489	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3490	fi
	3491
	3492	echo "set -x" > transfer_${localout[$i]}
	3493	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3494
	3495	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3496	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3497	printf "\n or higher cycle\n"
	3498	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3499
[1]	3500	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3501
	3502	if [[ $localhost = nech ]]
	3503	then
[82]	3504	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3505	else
	3506	if [[ "$LOGNAME" = b323013 ]]
	3507	then
[164]	3508	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3509	else
[164]	3510	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3511	fi
	3512	fi
	3513
	3514	else
	3515
	3516	# TRANSFER INNERHALB DIESES JOBS
	3517	transfer_failed=false
[82]	3518	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3519	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3520	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3521	[[ $? != 0 ]] && transfer_failed=true
[1]	3522
	3523	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3524	# LOKALER MASCHINE ANLEGEN
	3525	if [[ $transfer_failed = true ]]
	3526	then
	3527	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3528	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3529
	3530	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3531	# ANLEGEN.
	3532	eval local_catalog=${pathout[$i]}
	3533	if [[ ! -d $local_catalog ]]
	3534	then
	3535	printf " *** local directory does not exist. Trying to create:\n"
	3536	printf " $local_catalog \n"
	3537	mkdir -p $local_catalog
	3538	fi
	3539	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3540	transfer_problems=true
	3541	fi
	3542	fi
	3543	else
	3544
	3545	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3546	actionout[$i]=""
	3547	fi
	3548	fi
	3549
	3550
	3551	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3552	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3553	# REMOTE-RECHNUNGEN
	3554	if [[ "${actionout[$i]}" = tra ]]
	3555	then
	3556	if [[ $localhost != $fromhost ]]
	3557	then
	3558	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3559	then
	3560
	3561	# TRANSFER IN EIGENSTAENDIGEM JOB
	3562	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3563	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3564	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3565	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3566
	3567	echo "set -x" > transfer_${localout[$i]}
	3568	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3569
	3570	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3571	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3572	printf "\n or higher cycle\n"
	3573	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3574
[1]	3575	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3576
	3577	if [[ $localhost = nech ]]
	3578	then
[82]	3579	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3580	else
	3581	if [[ $LOGNAME = b323013 ]]
	3582	then
[164]	3583	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3584	else
[164]	3585	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3586	fi
	3587	fi
	3588
	3589	else
	3590
	3591	# TRANSFER INNERHALB DIESES JOBS
	3592	transfer_failed=false
[82]	3593	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3594	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3595	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3596	[[ $? != 0 ]] && transfer_failed=true
[1]	3597
	3598	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3599	# LOKALER MASCHINE ANLEGEN
	3600	if [[ $transfer_failed = true ]]
	3601	then
	3602	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3603	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3604
	3605	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3606	# ANLEGEN
	3607	eval local_catalog=${pathout[$i]}
	3608	if [[ ! -d $local_catalog ]]
	3609	then
	3610	printf " *** local directory does not exist. Trying to create:\n"
	3611	printf " $local_catalog \n"
	3612	mkdir -p $local_catalog
	3613	fi
	3614
	3615	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3616	transfer_problems=true
	3617	fi
	3618	fi
	3619	else
	3620
	3621	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3622	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3623	actionout[$i]=a
	3624	fi
	3625	fi
	3626
	3627
	3628	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3629	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3630	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3631	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3632	if [[ "${actionout[$i]}" = fl ]]
	3633	then
	3634	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3635	chmod g+rx $tmp_data_catalog
	3636	if [[ $files_for_pes = false ]]
	3637	then
	3638	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3639	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3640	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3641	else
	3642	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3643	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3644	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3645	cd ${localout[$i]}
	3646	for file in $(ls *)
	3647	do
	3648	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3649	done
	3650	cd $TEMPDIR
[1]	3651	fi
	3652
	3653
	3654	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3655	if [[ $store_on_archive_system = true ]]
	3656	then
	3657
	3658	if [[ $archive_system = asterix ]]
	3659	then
	3660	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3661	if [[ $files_for_pes = false ]]
	3662	then
	3663	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3664	else
	3665	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3666	fi
	3667	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3668	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3669	echo "then" >> archive_${frelout[$i]}
	3670	echo " do_stageout=false" >> archive_${frelout[$i]}
	3671	echo "else" >> archive_${frelout[$i]}
	3672	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3673	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3674	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3675	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3676	if [[ $files_for_pes = false ]]
	3677	then
	3678	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3679	else
	3680	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3681	fi
	3682	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3683	echo "fi" >> archive_${frelout[$i]}
	3684	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3685	elif [[ $archive_system = DMF ]]
	3686	then
	3687	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3688	if [[ $files_for_pes = false ]]
	3689	then
	3690	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3691	locat=DMF
	3692	exit
	3693	else
	3694	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3695	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3696	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3697	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3698	fi
	3699	elif [[ $archive_system = tivoli ]]
	3700	then
	3701	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3702	if [[ $files_for_pes = false ]]
	3703	then
	3704	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3705	echo "set -x" >> archive_${frelout[$i]}
	3706	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3707	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3708	else
	3709
	3710	echo "set -x" >> archive_${frelout[$i]}
	3711	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3712	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3713	cd $tmp_data_catalog
	3714	all_files=`ls -1 ${frelout[$i]}/*`
	3715	cd - > /dev/null
	3716	(( inode = 0 ))
	3717	(( tp1 = tasks_per_node + 1 ))
	3718	while (( inode < nodes ))
	3719	do
	3720	# echo "*** all_files = \"$all_files\" "
	3721	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3722	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3723	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3724	# echo "*** files = \"$files\" "
	3725	# echo "*** all_files = \"$all_files\" "
	3726	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3727	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3728	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3729	(( inode = inode + 1 ))
	3730	done
	3731	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3732	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3733	fi
	3734	elif [[ $archive_system = ut ]]
	3735	then
	3736	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3737	if [[ $files_for_pes = false ]]
	3738	then
	3739	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3740	echo "set -x" >> archive_${frelout[$i]}
	3741	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3742	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3743	else
	3744
	3745	echo "set -x" >> archive_${frelout[$i]}
	3746	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3747	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3748	cd $tmp_data_catalog
	3749	all_files=`ls -1 ${frelout[$i]}/*`
	3750	cd - > /dev/null
	3751	(( inode = 0 ))
	3752	(( tp1 = tasks_per_node + 1 ))
	3753	while (( inode < nodes ))
	3754	do
	3755	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3756	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3757	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3758	(( inode = inode + 1 ))
	3759	done
	3760	fi
	3761	elif [[ $archive_system = none ]]
	3762	then
	3763	printf " +++ archiving on $localhost not available!\n"
	3764	fi
	3765
	3766	if [[ $archive_system != none ]]
	3767	then
	3768	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3769	then
[164]	3770	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3771	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3772	elif [[ $localhost = nech ]]
	3773	then
[82]	3774	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3775	fi
	3776	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3777	fi
	3778	else
	3779	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3780	fi
	3781
	3782
	3783	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3784	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3785	if [[ $files_for_pes = false ]]
	3786	then
	3787	cat /dev/null > ${pathout[$i]}
	3788	else
	3789	mkdir -p ${pathout[$i]}
	3790	fi
	3791
	3792	fi
	3793
	3794
	3795	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3796	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3797	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3798	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3799	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3800	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3801	if [[ "${actionout[$i]}" = ar ]]
	3802	then
	3803	if [[ $files_for_pes = false ]]
	3804	then
	3805	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3806	printf "\n ${pathout[$i]}"
	3807	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3808	else
	3809	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3810	printf "\n ${pathout[$i]}"
	3811	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3812	fi
	3813	mv ${localout[$i]} ${frelout[$i]}
	3814
	3815	file_saved=false
	3816
	3817	if [[ $archive_system = asterix ]]
	3818	then
	3819	do_stageout=true
	3820	(( stageout_anz = 0 ))
	3821	while [[ $do_stageout = true ]]
	3822	do
	3823	if [[ $files_for_pes = false ]]
	3824	then
	3825	stageout ${frelout[$i]} > STAGE_OUTPUT
	3826	else
	3827	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3828	fi
	3829	cat STAGE_OUTPUT
	3830	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3831	then
	3832	file_saved=true
	3833	do_stageout=false
	3834	else
	3835	if [[ $files_for_pes = false ]]
	3836	then
	3837	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3838	else
	3839	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3840	fi
	3841	(( stageout_anz = stageout_anz + 1 ))
	3842	if (( stageout_anz == 10 ))
	3843	then
	3844	printf "\n +++ stoped after 10 unsuccessful tries!"
	3845	archive_save=false
	3846	do_stageout=false
	3847	else
	3848	printf "\n *** new try to store on archive after 15 min:"
	3849	sleep 900
	3850	fi
	3851	fi
	3852	done
	3853	elif [[ $archive_system = DMF ]]
	3854	then
	3855	if [[ $files_for_pes = false ]]
	3856	then
	3857	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3858	locat=DMF
	3859	exit
	3860	else
	3861	rm -rf $ARCHIVE/${frelout[$i]}
	3862	cp -r ${frelout[$i]} $ARCHIVE
	3863	fi
	3864	file_saved=true
	3865	elif [[ $archive_system = tivoli ]]
	3866	then
	3867	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3868	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3869	# GELEGT WERDEN
	3870	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3871	chmod g+rx $tmp_data_catalog
	3872	if [[ $files_for_pes = false ]]
	3873	then
	3874	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3875	else
	3876	mkdir $tmp_data_catalog/${frelout[$i]}
	3877	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3878	fi
	3879
	3880	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3881	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3882	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3883	if [[ $files_for_pes = false ]]
	3884	then
	3885	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3886	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3887	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3888	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3889	else
	3890	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3891	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3892	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3893	fi
	3894
[164]	3895	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3896	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3897	file_saved=true
	3898
	3899	elif [[ $archive_system = ut ]]
	3900	then
	3901	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3902	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3903	# GELEGT WERDEN
	3904	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3905	chmod g+rx $tmp_data_catalog
	3906	if [[ $files_for_pes = false ]]
	3907	then
	3908	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3909	else
	3910	mkdir $tmp_data_catalog/${frelout[$i]}
	3911	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3912	fi
	3913
	3914	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3915	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3916	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3917	if [[ $files_for_pes = false ]]
	3918	then
	3919	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3920	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3921	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3922	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3923	else
	3924	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3925	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3926	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3927	fi
	3928
[82]	3929	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3930	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3931	file_saved=true
	3932
	3933	else
	3934	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3935	archive_save=false
	3936	fi
	3937	if [[ $file_saved = true ]]
	3938	then
	3939	if [[ $files_for_pes = false ]]
	3940	then
	3941	cat /dev/null > ${pathout[$i]}
	3942	else
	3943	mkdir -p ${pathout[$i]}
	3944	fi
	3945	fi
	3946	fi
	3947
	3948	# APPEND AUF LOKALER MASCHINE
	3949	if [[ "${actionout[$i]}" = "a" ]]
	3950	then
	3951	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3952	cat ${localout[$i]} >> ${pathout[$i]}
	3953	fi
	3954
	3955	# KOPIEREN AUF LOKALER MASCHINE
	3956	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3957	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3958	then
	3959
	3960	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3961	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3962	then
	3963	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3964	if [[ $link_local_output = true ]]
	3965	then
	3966	printf " using ln -f\n"
	3967	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3968	fi
	3969	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3970	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3971	then
	3972	if [[ $link_local_output = true ]]
	3973	then
	3974	printf " ln failed, using cp...\n"
	3975	fi
	3976	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3977	fi
[1]	3978	else
	3979	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3980	if [[ $link_local_output = true ]]
	3981	then
	3982	printf " using ln -f\n"
	3983	ln -f ${localout[$i]} ${pathout[$i]}
	3984	fi
	3985	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3986	if [[ ! -f "${pathout[$i]}" ]]
	3987	then
	3988	if [[ $link_local_output = true ]]
	3989	then
	3990	printf " ln failed, using cp...\n"
	3991	fi
	3992	cp ${localout[$i]} ${pathout[$i]}
	3993	fi
[1]	3994	fi
	3995
	3996	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3997	then
	3998
	3999	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	4000	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	4001	# WIRD DANN KOPIERT
	4002	# PER MOVE UMBENANNT WERDEN
	4003	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	4004	if [[ $link_local_output = true ]]
	4005	then
	4006	printf " using ln -f\n"
	4007	mkdir ${pathout[$i]}
	4008	cd ${localout[$i]}
	4009	for file in $(ls *)
	4010	do
	4011	ln -f $file ${pathout[$i]}
	4012	done
	4013	cd $TEMPDIR
	4014	fi
	4015	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4016	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4017	then
	4018	if [[ $link_local_output = true ]]
	4019	then
	4020	printf " ln failed for .../_0000, using cp...\n"
	4021	fi
	4022	cp -r ${localout[$i]} ${pathout[$i]}
	4023	fi
[1]	4024
	4025	fi
	4026	fi
	4027	done
	4028	if (( i != 0 ))
	4029	then
	4030	if [[ $transfer_problems = true ]]
	4031	then
	4032	printf "\n$striche\n *** OUTPUT-files saved"
	4033	printf "\n +++ WARNING: some data transfers failed! \n"
	4034	else
	4035	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4036	fi
	4037	fi
	4038
	4039
	4040	# EVENTUELL FOLGEJOB STARTEN
	4041	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4042	if [[ -f CONTINUE_RUN ]]
	4043	then
	4044
	4045	if [[ $archive_save = true ]]
	4046	then
	4047
	4048	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4049	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4050	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4051	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4052	# HANDEN
	4053	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4054	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4055	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4056	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4057	then
	4058	mc=`echo $mc \| sed 's/#/f/g'`
	4059	fi
	4060
	4061
	4062	# JOB STARTEN
	4063	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4064	echo " $mc"
	4065	printf "\n$striche\n"
	4066	if [[ $localhost != $fromhost ]]
	4067	then
	4068
[204]	4069	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4070	then
	4071	echo "*** ssh will be used to initiate restart-runs!"
	4072	echo " return_addres=\"$return_addres\" "
	4073	echo " return_username=\"$return_username\" "
	4074	if [[ $return_addres = 172.20.25.41 ]]
	4075	then
	4076	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4077	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4078	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4079	then
	4080	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4081	else
[33]	4082	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4083	fi
	4084	else
	4085	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4086	locat=restart; exit
	4087	fi
	4088
	4089	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4090	# DER AKTUELLE JOB ENDET
	4091	sleep 30
	4092
	4093	else
	4094
	4095	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4096	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4097	cd $LOCAL_PWD
[108]	4098	if [[ $localhost = lcfimm ]]
	4099	then
	4100	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4101	else
	4102	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4103	fi
[1]	4104	cd - > /dev/null
	4105	fi
	4106	printf "\n$striche\n *** restart-run initiated \n"
	4107
	4108
	4109	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4110	# GEHOLT WORDEN SIND, LOESCHEN
	4111	(( i = 0 ))
	4112	while (( i < iin ))
	4113	do
	4114	(( i = i + 1 ))
	4115	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4116	then
	4117	rm -r $tmp_data_catalog/${frelin[$i]}
	4118	fi
	4119	done
	4120
	4121	else
	4122
	4123	printf "\n +++ no restart-run possible, since errors occured"
	4124	printf "\n during the archive process"
	4125	fi
	4126
	4127	fi
	4128
	4129
	4130
	4131	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4132	if [[ "$email_notification" != "none" ]]
[1]	4133	then
	4134
	4135	if [[ $localhost != $fromhost ]]
	4136	then
	4137	if [[ -f CONTINUE_RUN ]]
	4138	then
	4139	echo "PALM restart run necessary" > email_text
	4140	echo "description header of actual run:" >> email_text
	4141	cat CONTINUE_RUN >> email_text
	4142	echo "mrun-command to restart:" >> email_text
	4143	echo "$mc" >> email_text
	4144	else
	4145	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4146	fi
	4147	mail $email_notification < email_text
	4148	printf "\n *** email notification sent to \"$email_notification\" "
	4149	fi
	4150	fi
	4151
	4152
	4153
	4154	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4155	cd $HOME
	4156	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4157
	4158	else
	4159
	4160
	4161	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4162	# CHENDE AKTIONEN DURCHGEFUEHRT
	4163
	4164	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4165	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4166	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4167	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4168	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4169	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4170	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4171	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4172	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4173	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4174	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4175	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4176	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4177	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4178	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4179	if [[ $use_openmp = true ]]
	4180	then
	4181	mrun_com=${mrun_com}" -O"
	4182	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4183	else
	4184	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4185	fi
	4186	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4187	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4188	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4189	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4190	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4191	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4192	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4193	if [[ $do_remote = true ]]
	4194	then
	4195	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4196	fi
	4197
	4198
	4199	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4200	jobfile=jobfile.$RANDOM
	4201
	4202
	4203	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4204	echo "mkdir $TEMPDIR" >> $jobfile
	4205	echo "cd $TEMPDIR" >> $jobfile
	4206
	4207
	4208	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4209	if [[ $do_trace = true ]]
	4210	then
	4211	echo "set -x" >> $jobfile
	4212	else
	4213	echo "set +vx" >> $jobfile
	4214	fi
	4215
	4216
[191]	4217	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4218	# DATEI FUER DEN JOB
	4219	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4220	then
	4221
[191]	4222	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4223	# KOPIEREN
	4224	if [[ $restart_run != true ]]
	4225	then
	4226	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4227	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4228	fi
[1]	4229
[191]	4230	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4231	echo "set -x" >> $jobfile
	4232	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4233	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4234
[193]	4235	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4236	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4237	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4238	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4239	echo "execute_mrun=true" >> $jobfile
	4240	echo " " >> $jobfile
	4241
[191]	4242	else
	4243
	4244	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4245	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4246	if [[ $do_compile = true ]]
	4247	then
	4248
	4249	source_catalog=SOURCES_FOR_RUN_$fname
	4250
	4251	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4252	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4253	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4254	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4255	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4256	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4257
	4258	for filename in $source_list
	4259	do
	4260	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4261	echo "cat > $filename << \"%END%\"" >> $jobfile
	4262	cat $source_catalog/$filename >> $jobfile
	4263	echo " " >> $jobfile
	4264	echo "%END%" >> $jobfile
	4265	echo " " >> $jobfile
	4266	done
	4267
[1]	4268	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4269	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4270	cat $source_catalog/Makefile >> $jobfile
[1]	4271	echo " " >> $jobfile
	4272	echo "%END%" >> $jobfile
	4273	echo " " >> $jobfile
	4274
[191]	4275	echo "cd - > /dev/null" >> $jobfile
[1]	4276
[191]	4277	fi
[1]	4278
	4279
[191]	4280	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4281	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4282	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4283	cat $config_file >> $jobfile
	4284	echo "%END%" >> $jobfile
	4285	echo " " >> $jobfile
[1]	4286
	4287
[191]	4288	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4289	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4290	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4291	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4292	echo "%END%" >> $jobfile
	4293	if [[ $host = lctit ]]
	4294	then
	4295	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4296	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4297	fi
	4298	echo "chmod u+x $mrun_script_name" >> $jobfile
	4299	echo "execute_mrun=true" >> $jobfile
	4300	echo " " >> $jobfile
[1]	4301
	4302	fi
	4303
[191]	4304
[1]	4305	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4306	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4307	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4308	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4309	if [[ $do_remote = true ]]
	4310	then
	4311	(( i = 0 ))
	4312	while (( i < iin ))
	4313	do
	4314	(( i = i + 1 ))
	4315	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4316	if [[ "${transin[$i]}" = job ]]
	4317	then
	4318	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4319	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4320	echo " " >> $jobfile
	4321	echo "%END%" >> $jobfile
	4322	else
[82]	4323	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4324	fi
	4325
	4326	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4327	echo "if [[ \$? = 1 ]]" >> $jobfile
	4328	echo "then" >> $jobfile
	4329	echo " echo \" \" " >> $jobfile
	4330	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4331	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4332	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4333	echo " execute_mrun=false" >> $jobfile
	4334	echo "fi" >> $jobfile
	4335	done
	4336	fi
	4337
	4338	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4339	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4340	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4341	echo "export LOCAL_PWD" >> $jobfile
	4342
	4343	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4344	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4345	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4346
[66]	4347	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4348	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4349	then
	4350	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4351	fi
[1]	4352
	4353	# MRUN AUF ZIELRECHNER AUFRUFEN
	4354	echo "set -x" >> $jobfile
	4355	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4356
	4357	echo 'ls -al; echo `pwd`' >> $jobfile
	4358	echo "cd \$HOME" >> $jobfile
	4359	echo "rm -rf $TEMPDIR" >> $jobfile
	4360
	4361
	4362
	4363
	4364	# JOB PER SUBJOB STARTEN
	4365	if [[ $silent = false ]]
	4366	then
	4367	printf "\n "
	4368	else
	4369	printf "\n\n"
	4370	fi
	4371
[352]	4372	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4373	rm -rf $jobfile
	4374
	4375
	4376	fi # ENDE REMOTE-TEIL
	4377
	4378
	4379
	4380	# ENDE DER PROZEDUR

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