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source: palm/trunk/SCRIPTS/mrun @ 375

Last change on this file since 375 was 374, checked in by raasch, 15 years ago
mrun adjustments for ice2 and for ssh calls of restart jobs
Property svn:keywords set to `Id Rev`
File size: 166.0 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 374 2009-08-28 10:50:21Z heinze $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[369]	190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
[372]	191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
[211]	192
[1]	193
	194	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	195
	196	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	197	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	198	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	199
	200	AddFilenames=""
	201	additional_conditions=""
	202	add_source_path=""
	203	afname=""
	204	archive_save=true
	205	archive_system=none
	206	compiler_name=""
	207	cond1=""
	208	cond2=""
	209	config_file=.mrun.config
[206]	210	coupled_dist=""
	211	coupled_mode="mpi1"
[1]	212	cpp_opts=""
[82]	213	cpp_options=""
[1]	214	cpumax=0
	215	cpurest=0
	216	delete_temporary_catalog=true
	217	do_batch=false
	218	do_compile=true
	219	do_remote=false
	220	do_stagein=true
	221	do_stageout=true
	222	do_trace=false
[352]	223	email_notification="none"
[1]	224	exclude=""
	225	executable=""
	226	execution_error=false
[67]	227	fimm=false
[1]	228	fname=test
	229	fromhost=""
[78]	230	global_revision=""
[122]	231	group_number=none
[1]	232	host=""
	233	host_file=""
	234	hp=""
	235	ignore_archive_error=false
	236	input_list=""
	237	interpreted_config_file=""
[164]	238	job_catalog="~/job_queue"
[1]	239	job_on_file=""
	240	keep_data_from_previous_run=false
[183]	241	link_local_input=false
[149]	242	link_local_output=false
[1]	243	localhost_realname=$(hostname)
	244	local_compile=false
[260]	245	local_dvrserver_running=.FALSE.
[1]	246	locat=normal
	247	mainprog=""
	248	makefile=""
	249	mc=$0
	250	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	251	do
	252	mc=`echo $mc \| cut -f2- -d"/"`
	253	done
	254	module_files=""
	255	mrun_script_name=$mc
[82]	256	netcdf_inc=""
	257	netcdf_lib=""
[1]	258	netcdf_support=false
	259	node_usage=default
	260	numprocs=""
[206]	261	numprocs_atmos=0
	262	numprocs_ocean=0
[1]	263	OOPT=""
	264	openmp=false
	265	output_list=""
	266	package_list=""
	267	punkte="..........................................................."
	268	queue=none
	269	read_from_config=""
[5]	270	restart_run=false
[146]	271	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	272	if [[ $return_addres = 130.75.105.158 ]]
	273	then
	274	return_addres=172.20.25.41
	275	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	276	fi
	277	return_password=""
	278	return_username=$LOGNAME
	279	remotecall=false
	280	remote_username=""
[102]	281	run_coupled_model=false
[1]	282	run_mode=""
	283	scirocco=false
	284	store_on_archive_system=true
	285	striche=" ----------------------------------------------------------------------------"
	286	silent=false
	287	source_list=""
	288	source_path=SOURCE
	289	tasks_per_node=""
	290	threads_per_task=1
	291	tmpcreate=false
	292	tmp_data_catalog=""
	293	transfer_problems=false
	294	usern=$LOGNAME
	295	working_directory=`pwd`
	296	TOPT=""
	297	XOPT=""
	298	zeit=$( date \| cut -c 12-19 )
	299
	300	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	301	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	302
[66]	303	typeset -R30 calltime
[1]	304	typeset -L20 spalte1
	305	typeset -L40 spalte2
	306	typeset -L60 spalte3
	307	typeset -L35 string1=`date`
	308	typeset -L12 string2=$usern
	309	typeset -L12 string3=$localhost_realname
	310	typeset -L12 string4
	311	typeset -L12 string5
[201]	312	typeset -L30 version="MRUN 2.0 Rev$Rev: 374 $"
[1]	313
	314
	315
	316	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	317	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	318
	319	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	320	# EXPORTIERT WERDEN
	321	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	322	export group_number input_list memory numprocs output_list queue run_mode
[1]	323
	324
	325
	326	# FEHLERBEHANDLUNG
	327	# BEI EXIT:
[83]	328	trap 'rm -rf $working_directory/tmp_mrun
[69]	329	if [[ $locat != localhost ]]
[1]	330	then
[22]	331	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	332	# then
	333	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	334	#MRUN-calls on $localhost
	335	#
	336	#date and time user localhost remotehost termination mrun-command
	337	#--------------------------------------------------------------------------------------------------------------------
	338	#%STATEND%
	339	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	340	# fi
	341	#
	342	# # EINTRAG IN DIE STATISTIK-DATEI
	343	# string4=$host
	344	# string5=$locat
	345	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	346	# then
	347	# if [[ $do_batch = true ]]
	348	# then
	349	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	350	# else
	351	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	352	# fi
	353	# fi
[69]	354	echo " " > /dev/null
[1]	355	fi
	356
	357	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	358	then
	359
	360	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	361	(( i = 0 ))
	362	while (( i < iec ))
	363	do
	364	(( i = i + 1 ))
	365	printf "\n *** Execution of ERROR-command:\n"
	366	printf " >>> ${err_command[$i]}\n"
	367	eval ${err_command[$i]}
	368	done
	369	if [[ -n $interpreted_config_file ]] then
	370	rm -rf $interpreted_config_file
	371	fi
[71]	372	if [[ -n .mrun_environment ]] then
	373	rm -rf .mrun_environment
	374	fi
[1]	375	if [[ $tmpcreate = true ]]
	376	then
	377	printf "\n *** Contents of \"$TEMPDIR\":\n"
	378	ls -al; cd
	379	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	380	fi
[260]	381	if [[ "$dvrserver_id" != "" ]]
	382	then
	383	echo "+++ killing dvrserver_id=$dvrserver_id"
	384	kill $dvrserver_id
	385	fi
[1]	386	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	387	then
	388	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	389	fi
	390	printf "\n\n+++ MRUN killed \n\n"
	391	elif [[ $locat != control_c ]]
	392	then
	393	printf "\n\n --> all actions finished\n\n"
	394	printf " Bye, bye $usern !!\n\n"
	395	fi' exit
	396
	397
	398	# BEI TERMINAL-BREAK:
[83]	399	trap 'rm -rf $working_directory/tmp_mrun
[69]	400	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	401	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	402	then
	403	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	404	fi
[260]	405	if [[ "$dvrserver_id" != "" ]]
	406	then
	407	echo "+++ killing dvrserver_id=$dvrserver_id"
	408	kill $dvrserver_id
	409	fi
[1]	410	printf "\n+++ MRUN killed by \"^C\" \n\n"
	411	locat=control_c
	412	exit
	413	' 2
	414
	415
[22]	416	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	417	# BEEN SET
	418	if [[ "$PALM_BIN" = "" ]]
	419	then
	420	printf "\n +++ environment variable PALM_BIN has not been set"
	421	printf "\n please set it to the directory where the PALM scripts are located"
	422	locat=palm_bin; exit
	423	fi
[180]	424	export PATH=$PALM_BIN:$PATH
[22]	425
	426
[1]	427
	428	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	429	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	430	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	431	do
	432	case $option in
	433	(a) afname=$OPTARG;;
	434	(A) store_on_archive_system=false; mc="$mc -A";;
	435	(b) do_batch=true; mc="$mc -b";;
	436	(B) delete_temporary_catalog=false; mc="$mc -B";;
	437	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	438	(C) restart_run=true; mc="$mc -C";;
[1]	439	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	440	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	441	(F) job_on_file="-D"; mc="$mc -F";;
[122]	442	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	443	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	444	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	445	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	446	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	447	(I) ignore_archive_error=true; mc="$mc -I";;
	448	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	449	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	450	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	451	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	452	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	453	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	454	(O) use_openmp=true; mc="$mc -O";;
	455	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	456	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	457	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	458	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	459	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	460	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	461	(S) read_from_config=false; mc="$mc -S";;
	462	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	463	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	464	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	465	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	466	(v) silent=true; mc="$mc -v";;
	467	(x) do_trace=true;set -x; mc="$mc -x";;
	468	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	469	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	470	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	471	(\?) printf "\n +++ unknown option $OPTARG \n"
	472	printf "\n --> type \"$0 ?\" for available options \n"
	473	locat=parameter;exit;;
	474	esac
	475	done
	476
	477
	478	# EVTL. POSITIONSPARAMETER EINLESEN
	479	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	480	shift OPTIND-1
	481
	482
	483	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	484	if [[ "$1" = "?" ]]
	485	then
	486	(printf "\n *** mrun can be called as follows:\n"
[291]	487	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	488	printf "\n Description of available options:\n"
	489	printf "\n Option Description Default-Value"
	490	printf "\n -a base name of input files equiv. -d"
	491	printf "\n -A no archiving when using file-attribute fl"
	492	printf "\n -b batch-job on local machine ---"
	493	printf "\n -B do not delete temporary directory at end ---"
	494	printf "\n -c configuration file .mrun.config"
	495	printf "\n -d base name of files attached to program test"
	496	printf "\n -D preprocessor(cpp)-directives \"\" "
	497	printf "\n -F create remote job file only ---"
	498	printf "\n -h execution host $localhost_realname"
	499	printf "\n -i INPUT control list \"\" "
	500	printf "\n -I archiving errors of previous batch-jobs"
	501	printf "\n will be ignored"
	502	printf "\n -k keep data from previous run"
	503	printf "\n -K additional conditions for controling"
	504	printf "\n usage of conditional code and"
	505	printf "\n env-variables in configuration file \"\" "
	506	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	507	printf "\n -M Makefile name Makefile"
	508	printf "\n -n node usage (shared/not_shared) depending on -h"
	509	printf "\n -o OUTPUT control list \"\" "
	510	printf "\n -O use OpenMP ---"
	511	printf "\n -p software package list \"\" "
	512	printf "\n -q queue \"$queue\" "
	513	printf "\n -r run control list (combines -i -o) \"\" "
	514	printf "\n -s filenames of routines to be compiled \"\" "
	515	printf "\n must end with .f, .f90, .F, or .c !"
	516	printf "\n use \"..\" for more than one file and wildcards"
	517	printf "\n -s TEST compiles all files with w-permit"
	518	printf "\n -S config file interpreted by shellscript ---"
	519	printf "\n -t allowed cpu-time in seconds (batch) 0"
	520	printf "\n -T tasks per node depending on -h"
	521	printf "\n -u username on remote machine \"\" "
	522	printf "\n -v no prompt for confirmation ---"
	523	printf "\n -x tracing of mrun for debug purposes ---"
	524	printf "\n -X # of processors (on parallel machines) 1"
[291]	525	printf "\n -y add appendix \"_O\" to all local output"
	526	printf "\n files (ocean precursor runs followed by"
	527	printf "\n coupled atmosphere-ocean runs) ---"
[206]	528	printf "\n -Y run coupled model, \"#1 #2\" with"
	529	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	530	printf "\n "
	531	printf "\n Possible values of positional parameter <modus>:"
	532	printf "\n \"?\" - this outline \n\n") \| more
	533	exit
	534	elif [[ "$1" != "" ]]
	535	then
	536	printf "\n +++ positional parameter $1 unknown \n"
	537	locat=parameter; exit
	538	fi
	539
	540
	541
	542	# KURZE STARTMELDUNG
	543	printf "\n*** $version "
	544	printf "\n will be executed. Please wait ..."
	545
	546
[82]	547
	548	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	549	if [[ ! -f $config_file ]]
	550	then
	551	printf "\n\n +++ configuration file: "
	552	printf "\n $config_file"
	553	printf "\n does not exist"
	554	locat=connect; exit
	555	fi
	556
	557
	558	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	559	line=""
	560	grep "%host_identifier" $config_file > tmp_mrun
	561	while read line
	562	do
[206]	563	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	564	then
	565	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	566	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	567	if [[ $localhost_realname = $HOSTNAME ]]
[82]	568	then
	569	localhost=$host_identifier
	570	break
	571	fi
	572	fi
	573	done < tmp_mrun
	574
	575	if [[ "$localhost" = "" ]]
	576	then
	577	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	578	printf "\n for local host \"$localhost_realname\"."
	579	printf "\n Please add line"
	580	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	581	printf "\n to the configuration file."
	582	locat=localhost; exit
	583	fi
	584
	585
	586	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	587	case $localhost_realname in
	588	(breg-en0\|berni-en0) archive_system=tivoli;;
	589	(cs*) archive_system=ut;;
	590	(fimm.bccs.uib.no) fimm=true;;
	591	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	592	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	593	(scirocco) scirocco=true;;
	594	esac
	595
	596
	597
[1]	598	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	599	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	600	[[ "$afname" = "" ]] && afname=$fname
	601
	602
	603	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	604	if [[ "$run_mode" != "" ]]
	605	then
	606	input_list="$input_list $run_mode"
	607	output_list="$output_list $run_mode"
	608	fi
	609
	610
	611	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	612	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	613	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	614	# STARTET)
	615	if [[ "$fromhost" = "" ]]
	616	then
	617	fromhost=$localhost
	618	fi
	619
	620
	621	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	622	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	623	then
	624	source_list=TEST
	625	local_compile=true
	626	host=$localhost
	627	fi
	628
	629
	630	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	631	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	632	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	633	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	634	if [[ -n $host && "$host" != $localhost ]]
	635	then
	636	do_batch=true
	637	do_remote=true
	638	case $host in
[367]	639	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	640	(*) printf "\n"
[83]	641	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	642	printf "\n is not available"
[1]	643	locat=nqs; (( iec = 0 )); exit;;
	644	esac
	645	else
	646	host=$localhost
	647	fi
	648
	649
	650	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	651	if [[ -n $additional_conditions ]]
	652	then
[69]	653	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	654	cond1=`echo $additional_conditions \| cut -d" " -f1`
	655	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	656	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	657	if [[ -n $dummy ]]
	658	then
	659	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	660	locat=options; exit
	661	fi
	662	fi
	663
	664
[206]	665	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	666	if [[ $run_coupled_model = true ]]
	667	then
	668
	669	if [[ -n $coupled_dist ]]
	670	then
	671
	672	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	673	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	674
	675	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	676	then
	677
	678	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	679	printf "\n PEs (total) : $numprocs"
	680	printf "\n PEs (atmosphere): $numprocs_atmos"
	681	printf "\n PEs (ocean) : $numprocs_ocean"
	682	locat=coupling; exit
	683
	684	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	685	# THIS SHOULD BE REMOVED IN FUTURE
	686	elif (( $numprocs_ocean != $numprocs_atmos ))
	687	then
	688
	689	printf "\n +++ currently only 1:1 topologies are supported"
	690	printf "\n PEs (total) : $numprocs"
	691	printf "\n PEs (atmosphere): $numprocs_atmos"
	692	printf "\n PEs (ocean) : $numprocs_ocean"
	693	(( numprocs_atmos = $numprocs / 2 ))
	694	(( numprocs_ocean = $numprocs / 2 ))
	695	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	696
	697	fi
	698
	699	else
	700
	701	(( numprocs_ocean = $numprocs / 2 ))
	702	(( numprocs_atmos = $numprocs / 2 ))
	703
	704	fi
	705	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	706
	707	# GET coupled_mode FROM THE CONFIG FILE
	708	line=""
	709	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	710	while read line
	711	do
	712	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	713	then
	714	coupled_mode="mpi2"
	715	fi
	716	done < tmp_mrun
	717
	718	fi
	719
	720
[1]	721	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	722	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	723	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	724	then
	725	if [[ $ignore_archive_error = false ]]
	726	then
	727	printf "\n +++ data archiving of previous run failed"
	728	printf "\n see directory \~/job_queue on remote machine"
	729	locat=archive; exit
	730	else
	731	printf "\n +++ warning: data archiving in a previous run failed"
	732	printf "\n MRUN continues, trying to get backup copy"
	733	fi
	734	fi
	735
	736
	737
	738	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	739	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	740	if [[ "$read_from_config" = false ]]
	741	then
	742
	743	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	744	while read zeile
	745	do
	746	[[ $silent = false ]] && printf "."
	747
	748
	749	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	750	# ERSETZEN
	751	eval zeile=\"$zeile\"
	752
	753
	754	# INTERPRETATION DER ZEILE
[21]	755	if [[ "$(echo $zeile)" = "" ]]
[1]	756	then
[21]	757	# LEERZEILE, KEINE AKTION
	758	continue
[1]	759
[21]	760	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	761	then
	762
[1]	763	# ZEILE IST KOMMENTARZEILE
	764	true
	765
	766	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	767	then
	768
	769	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	770	zeile=$(echo $zeile \| cut -c2-)
[69]	771	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	772	var=`echo $zeile \| cut -d" " -f1`
	773	value=`echo $zeile \| cut -d" " -s -f2`
	774	for_host=`echo $zeile \| cut -d" " -s -f3`
	775	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	776	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	777
	778	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	779	then
	780
	781	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	782	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	783	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	784
	785
	786	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	787	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	788	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	789	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	790	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	791	# KONFIGURATIONSDATEI
	792	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	793	then
	794	eval $var=\$value
	795
	796	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	797	if [[ $do_trace = true ]]
	798	then
	799	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	800	fi
	801	fi
	802
	803	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	804	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	805	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	806	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	807	if [[ $var = host ]]
	808	then
	809	if [[ -n $host && "$host" != $localhost ]]
	810	then
	811	do_batch=true
	812	do_remote=true
	813	case $host in
[367]	814	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	815	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	816	printf "\n is not available"
[1]	817	locat=nqs; exit;;
	818	esac
	819	else
	820	host=$localhost
	821	fi
	822	fi
	823
	824	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	825	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	826	# DEN PROGRAMMEN BENOETIGT WERDEN
	827	export $var
	828	fi
	829
	830
	831
	832
	833	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	834	then
	835
	836	# ZEILE DEFINIERT ERROR-KOMMANDO
	837	(( iec = iec + 1 ))
	838	zeile=$(echo $zeile \| cut -c4-)
	839	err_command[$iec]="$zeile"
	840
	841	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	842	then
	843
	844	# ZEILE DEFINIERT INPUT-KOMMANDO
	845	(( iic = iic + 1 ))
	846	zeile=$(echo $zeile \| cut -c4-)
	847	in_command[$iic]="$zeile"
	848
	849	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	850	then
	851
	852	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	853	(( ioc = ioc + 1 ))
	854	zeile=$(echo $zeile \| cut -c4-)
	855	out_command[$ioc]="$zeile"
	856
	857	else
	858
	859	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	860	# s2a: in/out - Feld
	861	# s2b: loc - Feld (optional)
	862	# s2c: tr/ar - Feld (optional)
[69]	863	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	864	s1=`echo $zeile \| cut -d" " -f1`
	865	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	866	s2a=$(echo $s2 \| cut -d":" -f1)
	867	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	868	then
	869	s2b=""
	870	s2c=""
	871	else
[69]	872	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	873	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	874	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	875	fi
[69]	876	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	877	s3=`echo $zeile \| cut -d" " -f3`
	878	s4=`echo $zeile \| cut -d" " -s -f4`
	879	s5=`echo $zeile \| cut -d" " -s -f5`
	880	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	881
	882
	883	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	884	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	885	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	886	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	887	# HANDEN SEIN MUSS (D.H. s2b = loc)
	888	IFSALT="$IFS"; IFS="$IFS:"
	889	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	890	then
	891	found=false
	892	for actual in $input_list
	893	do
	894	for formal in $s3
	895	do
	896	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	897	done
	898	done
	899	if [[ $found = true ]]
	900	then
	901	(( iin = iin + 1 ))
	902	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	903	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	904	extin[$iin]=$s6
	905	fi
	906	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	907	then
	908	found=false
	909	for actual in $output_list
	910	do
	911	for formal in $s3
	912	do
	913	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	914	done
	915	done
	916	if [[ $found = true ]]
	917	then
	918	(( iout = iout + 1 ))
	919	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	920	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	921	fi
	922	elif [[ "$s2a" != in && "$s2a" != out ]]
	923	then
	924	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	925	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	926	locat=connect; exit
	927	fi
	928	IFS="$IFSALT"
	929	fi
	930	done < $config_file
	931
	932	else
	933
	934
	935	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	936	[[ $silent = false ]] && printf "..."
	937	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	938	export interpreted_config_file=.icf.$RANDOM
	939
	940
[69]	941
	942	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	943	# VERFUEGUNG STELLEN
	944	cat > .mrun_environment << %%END%%
	945	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	946	config_file = '$config_file', do_remote = '$do_remote',
	947	do_trace = '$do_trace', host = '$host',
	948	input_list = '$input_list', icf = '$interpreted_config_file',
	949	localhost = '$localhost', output_list = '$output_list' /
	950
	951	%%END%%
	952
	953	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	954	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	955	mrun_memory=$memory
[127]	956	mrun_group_number=$group_number
[69]	957	mrun_cpumax=$cpumax
	958	mrun_numprocs=$numprocs
	959
[251]	960	if [[ $localhost_realname = "sx-fep" ]]
[66]	961	then
[251]	962	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	963	else
	964	interpret_config.x
	965	fi
[71]	966	rm .mrun_environment
[1]	967
[71]	968
[1]	969	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	970	chmod u+x $interpreted_config_file
	971	export PATH=$PATH:.
	972	. $interpreted_config_file
[71]	973	rm $interpreted_config_file
[1]	974
[71]	975
[69]	976	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	977	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	978	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	979	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	980	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	981
[1]	982	fi
	983
	984
	985	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	986	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	987	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	988	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	989	if [[ "$SOURCES_COMPLETE" = "" ]]
	990	then
	991
	992	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	993	# VEREINBART WURDE
	994	source_path=""
	995	line=""
	996	grep "%source_path" $config_file > tmp_mrun
	997	while read line
	998	do
	999	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1000	then
	1001	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1002	then
	1003	global_source_path=`echo $line \| cut -d" " -f2`
	1004	fi
	1005	fi
	1006	done < tmp_mrun
	1007
	1008	line=""
	1009	found=false
	1010	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1011	while read line
	1012	do
	1013	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1014	then
	1015	if [[ $found = true ]]
	1016	then
	1017	printf "\n\n +++ more than one source path found in configuration file"
	1018	printf "\n for local host \"$localhost\" "
	1019	locat=source_path; exit
	1020	fi
	1021	source_path=`echo $line \| cut -d" " -f2`
	1022	found=true
	1023	fi
	1024	done < tmp_mrun
	1025	rm tmp_mrun
	1026
	1027	if [[ "$source_path" = "" ]]
	1028	then
	1029	if [[ "$global_source_path" != "" ]]
	1030	then
	1031	source_path=$global_source_path
	1032	else
	1033	printf "\n\n +++ no source path found in configuration file"
	1034	printf "\n for local host \"$localhost\" "
	1035	locat=source_path; exit
	1036	fi
	1037	fi
	1038	eval source_path=$source_path
	1039
	1040	if [[ ! -d $source_path ]]
	1041	then
	1042	printf "\n\n +++ source path \"$source_path\" on local host"
	1043	printf "\n \"$localhost\" does not exist"
	1044	locat=source_path; exit
	1045	fi
	1046
	1047	fi
	1048
	1049
[78]	1050	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1051	# DURCH OPTION -G MITGETEILT)
	1052	if [[ "$global_revision" = "" ]]
	1053	then
	1054	global_revision=`svnversion $source_path 2>/dev/null`
	1055	global_revision="Rev: $global_revision"
	1056	fi
[1]	1057
[78]	1058
[1]	1059	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1060	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1061	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1062	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1063	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1064	if [[ -n $host && "$host" != $localhost ]]
	1065	then
	1066	do_batch=true
	1067	do_remote=true
	1068	case $host in
[367]	1069	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1070	(*) printf "\n"
[83]	1071	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1072	printf "\n is not available"
[1]	1073	locat=nqs; (( iec = 0 )); exit;;
	1074	esac
	1075	else
	1076	host=$localhost
	1077	fi
	1078
	1079
	1080	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1081	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1082	then
	1083
	1084	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1085	if [[ ! -n $numprocs ]]
	1086	then
	1087	printf "\n"
	1088	printf "\n +++ option \"-K parallel\" requires additional specification"
	1089	printf "\n of the number of processors to be used by"
	1090	printf "\n mrun-option \"-X\" or by environment-variable"
	1091	printf "\n \"numprocs\" in the configuration file"
	1092	locat=numprocs; (( iec = 0 )); exit
	1093	fi
	1094
	1095	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1096	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1097	# GESAMTPROZESSORANZAHL IST
[251]	1098	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1099	then
	1100	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1101	(( ival = $tasks_per_node ))
	1102	(( pes = numprocs ))
	1103	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1104	# then
	1105	# (( pes = pes - 1 ))
	1106	# fi
	1107	(( ii = pes / ival ))
	1108	if (( pes - ii * ival > 0 ))
	1109	then
	1110	printf "\n"
	1111	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1112	printf "\n divisor of the total number of processors (option \"-X\")"
	1113	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1114	locat=tasks_per_node; (( iec = 0 )); exit
	1115	fi
	1116	fi
	1117
	1118	# IBMY HAT NUR EINEN KNOTEN
	1119	if [[ $host = ibmy ]]
	1120	then
	1121	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1122	then
	1123	printf "\n"
	1124	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1125	printf "\n total number of processors (option \"-X\")"
	1126	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1127	locat=tasks_per_node; (( iec = 0 )); exit
	1128	fi
	1129	fi
	1130
	1131	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1132	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1133	if [[ $use_openmp = true ]]
	1134	then
	1135	threads_per_task=$tasks_per_node
	1136	tasks_per_node=1
	1137	fi
	1138	OOPT="-O $threads_per_task"
	1139	TOPT="-T $tasks_per_node"
	1140
	1141	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1142	if [[ "$tasks_per_node" != "" ]]
	1143	then
	1144	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1145	fi
	1146
	1147	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1148	# SETZEN
	1149	if [[ $node_usage = default ]]
	1150	then
	1151	if [[ $host = ibms ]]
	1152	then
	1153	node_usage=shared
[118]	1154	elif [[ $host = lctit ]]
	1155	then
[265]	1156	node_usage=RAM64GB
[181]	1157	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1158	then
	1159	node_usage=singlejob
[1]	1160	else
	1161	node_usage=not_shared
	1162	fi
	1163	fi
[181]	1164
[265]	1165	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1166	then
	1167	printf "\n"
	1168	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1169	printf "\n \"shared\" or \"not_shared\""
	1170	locat=tasks_per_node; (( iec = 0 )); exit
	1171	fi
	1172
	1173	fi
	1174
	1175	# PRUEFEN, OB HOSTFILE EXISTIERT
	1176	if [[ -n $hostfile ]]
	1177	then
	1178	if [[ ! -f $hostfile ]]
	1179	then
	1180	printf "\n"
	1181	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1182	locat=hostfile; exit
	1183	fi
	1184	fi
	1185
	1186	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1187	if [[ $host = ibmy && $do_remote = false ]]
	1188	then
	1189	if [[ ! -f $HOME/.rhosts ]]
	1190	then
	1191	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1192	printf "\n\n *** file:"
	1193	printf "\n $HOME/.rhosts"
	1194	printf "\n was created\n"
	1195	fi
	1196	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1197	then
	1198	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1199	printf "\n\n *** file:"
	1200	printf "\n $HOME/.rhosts"
	1201	printf "\n was extended by the name of the current host\n"
	1202	fi
	1203	fi
	1204
	1205
	1206
	1207	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1208	if [[ $queue = none ]]
	1209	then
	1210	case $host in
	1211	(ibmb) if [[ $node_usage = shared ]]
	1212	then
	1213	queue=cshare
	1214	else
	1215	queue=csolo
	1216	fi;;
[312]	1217	(ibmh) queue=no_class;;
[1]	1218	(ibmy) queue=parallel;;
[191]	1219	(lcsgib) queue=bigq;;
	1220	(lcsgih) queue=bigq;;
[265]	1221	(lctit) queue=RAM64GB;;
[1]	1222	(nech) queue=none;;
[253]	1223	(necriam) queue=SP;;
[1]	1224	(unics) queue=unics;;
	1225	esac
	1226	fi
	1227
	1228
	1229	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1230	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1231	# ERMITTELN
	1232	(( i = 0 ))
	1233	while (( i < iin ))
	1234	do
	1235	(( i = i + 1 ))
	1236	(( maxcycle = 0 ))
	1237
	1238	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1239	if [[ "${actionin[$i]}" = di ]]
	1240	then
	1241	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1242	# REM-MASCHINE AUSWERTEN
	1243	eval filename=${pathin[$i]}/${endin[$i]}
	1244	else
	1245	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1246	# REM-MASCHINE AUSWERTEN
	1247	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1248	fi
	1249
	1250	# PRUEFEN AUF VORHANDENSEIN
	1251	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1252	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1253	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1254	then
	1255	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1256	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1257	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1258	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1259	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1260	if [[ "${transin[$i]}" != "locopt" ]]
	1261	then
	1262	printf "\n\n +++ INPUT-file: "
	1263	if [[ "${extin[$i]}" = "" ]]
	1264	then
	1265	printf "\n $filename"
	1266	else
	1267	printf "\n $filename.${extin[$i]}"
	1268	fi
	1269	printf "\n does not exist\n"
	1270	locat=input; exit
	1271	else
	1272	transin[$i]="unavailable"
	1273	fi
	1274	else
	1275
	1276	# ZYKLUSNUMMER FESTSTELLEN
	1277	ls -1 -d $filename > filelist 2>/dev/null
	1278	ls -1 -d $filename.* >> filelist 2>/dev/null
	1279	while read zeile
	1280	do
	1281	cycle=$(print $zeile \| cut -f2 -d".")
	1282	if [[ "$cycle" = "$zeile" ]]
	1283	then
	1284	(( icycle = 0 ))
	1285	elif [[ "$cycle" = "${extin[$i]}" ]]
	1286	then
	1287	(( icycle = 0 ))
	1288	else
	1289	(( icycle = $cycle ))
	1290	fi
	1291	if (( icycle > maxcycle ))
	1292	then
	1293	(( maxcycle = icycle ))
	1294	file_to_be_used=$zeile
	1295	fi
	1296	done <filelist
	1297	rm filelist
	1298
	1299	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1300	if (( maxcycle > 0 ))
	1301	then
	1302	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1303	then
	1304	filename=${filename}.$maxcycle.${extin[$i]}
	1305	else
	1306	filename=${filename}.$maxcycle
	1307	fi
	1308	else
	1309	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1310	then
	1311	filename=${filename}.${extin[$i]}
	1312	fi
	1313	fi
	1314
	1315	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1316	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1317	absnamein[$i]=$filename
	1318	if (( maxcycle > 0 ))
	1319	then
	1320	if [[ "${actionin[$i]}" = di ]]
	1321	then
	1322	frelin[$i]=${endin[$i]}.$maxcycle
	1323	else
	1324	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1325	fi
	1326	else
	1327	if [[ "${actionin[$i]}" = di ]]
	1328	then
	1329	frelin[$i]=${endin[$i]}
	1330	else
	1331	frelin[$i]=${afname}${endin[$i]}
	1332	fi
	1333	fi
	1334
	1335	fi
	1336	done
	1337
	1338
	1339	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1340	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1341	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1342	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1343	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1344	(( i = 0 ))
	1345	while (( i < iout ))
	1346	do
	1347	(( i = i + 1 ))
	1348	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1349	then
[260]	1350	if [[ "${actionout[$i]}" = tr ]]
[1]	1351	then
	1352	actionout[$i]=""
[260]	1353	elif [[ "${actionout[$i]}" = trpe ]]
	1354	then
	1355	actionout[$i]=pe
[1]	1356	elif [[ "${actionout[$i]}" = tra ]]
	1357	then
	1358	actionout[$i]=a
	1359	fi
	1360	(( maxcycle = 0 ))
	1361	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1362	eval catalogname=${pathout[$i]}
	1363	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1364	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1365	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1366	then
	1367
	1368	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1369	if cat /dev/null > $filename
	1370	then
	1371	rm $filename
	1372	else
	1373
	1374	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1375	if [[ ! -d $catalogname ]]
	1376	then
	1377	if mkdir -p $catalogname
	1378	then
	1379	printf "\n\n *** directory:"
	1380	printf "\n $catalogname"
	1381	printf "\n was created\n"
	1382	else
	1383	printf "\n\n +++ OUTPUT-file:"
	1384	printf "\n $filename"
	1385	printf "\n cannot be created, because directory does not exist"
	1386	printf "\n and cannot be created either"
	1387	printf "\n"
	1388	locat=output ; exit
	1389	fi 2>/dev/null
	1390	else
	1391	printf "\n\n +++ OUTPUT-file:"
	1392	printf "\n $filename"
	1393	printf "\n cannot be created, although directory exists"
	1394	printf "\n"
	1395	locat=output ; exit
	1396	fi
	1397	fi 2>/dev/null
	1398	else
	1399
	1400	# ZYKLUSNUMMER FESTSTELLEN
	1401	ls -1 -d $filename > filelist 2>/dev/null
	1402	ls -1 -d $filename.* >> filelist 2>/dev/null
	1403	while read zeile
	1404	do
	1405	cycle=$(print $zeile \| cut -f2 -d".")
	1406	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1407	then
	1408	(( icycle = 1 ))
	1409	else
	1410	(( icycle = $cycle + 1 ))
	1411	fi
	1412	if (( icycle > maxcycle ))
	1413	then
	1414	(( maxcycle = icycle ))
	1415	fi
	1416	done <filelist
	1417	rm filelist
	1418	fi
	1419
	1420	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1421	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1422	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1423	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1424	if [[ "${actionout[$i]}" != a ]]
	1425	then
	1426	if (( maxcycle > 0 ))
	1427	then
	1428	filename=${filename}.$maxcycle
	1429	if cat /dev/null > $filename
	1430	then
	1431	rm $filename
	1432	else
	1433	printf "\n +++ OUTPUT-file:"
	1434	printf "\n $filename"
	1435	printf "\n cannot be created"
	1436	locat=output ; exit
	1437	fi
	1438	fi
	1439	else
	1440	(( maxcycle = maxcycle - 1 ))
	1441	if (( maxcycle > 0 ))
	1442	then
	1443	filename=${filename}.$maxcycle
	1444	fi
	1445	fi
	1446
	1447	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1448	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1449	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1450	pathout[$i]=$filename
	1451	if (( maxcycle > 0 ))
	1452	then
	1453	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1454	else
	1455	frelout[$i]=${fname}${endout[$i]}
	1456	fi
	1457
	1458	fi
	1459	done
	1460
	1461
[260]	1462	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1463	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1464	then
[260]	1465	if [[ "$dvr_inc" = "" ]]
[83]	1466	then
[260]	1467	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1468	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1469	locat=dvr; exit
[83]	1470	fi
[260]	1471	if [[ "$dvr_lib" = "" ]]
[83]	1472	then
[260]	1473	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1474	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1475	locat=dvr; exit
[83]	1476	fi
	1477	fi
	1478
	1479
[1]	1480	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1481	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1482	# UEBERSETZT ZU WERDEN)
	1483	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1484	then
	1485	printf "\n +++ neither main program nor executable defined"
	1486	locat=source; exit
	1487	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1488	then
	1489	printf "\n +++ main program as well as executable defined"
	1490	locat=source; exit
	1491	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1492	then
	1493	do_compile=false
	1494	fi
	1495
	1496
[191]	1497	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1498	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1499	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1500	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1501	then
	1502	rm -rf SOURCES_FOR_RUN_$fname
	1503	mkdir SOURCES_FOR_RUN_$fname
	1504	fi
	1505
	1506
[1]	1507	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1508	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1509	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1510	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1511	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1512	then
	1513
[5]	1514	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1515	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1516
	1517
	1518	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1519	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1520	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1521	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1522	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1523	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1524	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1525	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1526	# GESAMMELT
[5]	1527	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1528	then
	1529
	1530	source_list=""
	1531	cd $source_path
	1532
	1533
	1534	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1535	Names=$(ls -1 *.f90 2>&1)
	1536	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1537	Names=$(ls -1 *.F90 2>&1)
	1538	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1539	Names=$(ls -1 *.F 2>&1)
	1540	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1541	Names=$(ls -1 *.f 2>&1)
	1542	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1543	Names=$(ls -1 *.c 2>&1)
	1544	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1545
	1546
	1547	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1548	for dateiname in $Filenames
	1549	do
	1550	if [[ -w $dateiname ]]
	1551	then
	1552	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1553	then
	1554	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1555	source_list=$source_list"$dateiname "
	1556	fi
	1557	fi
	1558	done
	1559
	1560	cd - > /dev/null
	1561
	1562
[5]	1563	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1564	then
	1565
	1566	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1567	source_list=""
	1568	cd $source_path
	1569
	1570
	1571	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1572	if [[ ! -d .svn ]]
	1573	then
	1574	printf "\n\n +++ source directory"
	1575	printf "\n \"$source_path\" "
	1576	printf "\n is not under control of \"subversion\"."
[306]	1577	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1578	fi
	1579
	1580
	1581	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1582	Filenames=""
[69]	1583	svn status > tmp_mrun
	1584	while read line
[5]	1585	do
	1586	firstc=`echo $line \| cut -c1`
	1587	if [[ $firstc = M \|\| $firstc = "?" ]]
	1588	then
	1589	Name=`echo "$line" \| cut -c8-`
	1590	extension=`echo $Name \| cut -d. -f2`
	1591	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1592	then
	1593	Filenames="$Filenames "$Name
	1594	fi
	1595	fi
[69]	1596	done < tmp_mrun
[5]	1597
	1598
	1599	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1600	for dateiname in $Filenames
	1601	do
	1602	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1603	source_list=$source_list"$dateiname "
	1604	done
	1605
	1606	cd - > /dev/null
	1607
	1608
[1]	1609	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1610	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1611	# VORHANDEN
[5]	1612	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1613	then
	1614
	1615	cd $source_path
	1616
	1617	for filename in $source_list
	1618	do
	1619
	1620	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1621	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1622	then
	1623	printf "\n +++ source code file: $filename"
	1624	printf "\n must not contain (\"/\") "
	1625	locat=source; exit
	1626	fi
	1627
	1628	if [[ ! -f $filename ]]
	1629	then
	1630	printf "\n +++ source code file: $filename"
	1631	printf "\n does not exist"
	1632	locat=source; exit
	1633	else
	1634	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1635	fi
	1636
	1637	done
	1638
	1639	cd - > /dev/null
	1640
	1641	fi
	1642
	1643
	1644	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1645	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1646	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1647	if [[ $restart_run != true ]]
[1]	1648	then
	1649
	1650	if [[ ! -f "$source_path/$mainprog" ]]
	1651	then
	1652	printf "\n\n +++ main program: $mainprog"
	1653	printf "\n does not exist in source directory"
	1654	printf "\n \"$source_path\"\n"
	1655	locat=source; exit
	1656	else
	1657	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1658	then
	1659	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1660	source_list=${mainprog}" $source_list"
	1661	fi
	1662	fi
	1663	fi
	1664
	1665
[211]	1666	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1667	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1668	if [[ "$restart_run" != true ]]
	1669	then
	1670	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1671	if [[ ! -f $makefile ]]
	1672	then
	1673	printf "\n +++ file \"$makefile\" does not exist"
	1674	locat=make; exit
	1675	else
	1676	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1677	fi
	1678	fi
	1679
	1680
[1]	1681	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1682	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1683	then
	1684
	1685	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1686	if [[ ! -d $add_source_path ]]
	1687	then
	1688	printf "\n\n +++ WARNING: additional source code directory"
	1689	printf "\n \"$add_source_path\" "
	1690	printf "\n does not exist or is not a directory."
	1691	printf "\n No source code will be used from this directory!\n"
	1692	add_source_path=""
	1693	sleep 3
	1694	else
	1695
	1696	cd $add_source_path
[211]	1697	found=false
[1]	1698
	1699	Names=$(ls -1 *.f90 2>&1)
	1700	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1701	Names=$(ls -1 *.F90 2>&1)
	1702	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1703	Names=$(ls -1 *.F 2>&1)
	1704	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1705	Names=$(ls -1 *.f 2>&1)
	1706	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1707	Names=$(ls -1 *.c 2>&1)
	1708	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1709
	1710	cd - > /dev/null
	1711	cd SOURCES_FOR_RUN_$fname
	1712
[211]	1713	# COPY MAKEFILE IF EXISTING
	1714	if [[ -f $add_source_path/Makefile ]]
	1715	then
	1716	printf "\n\n *** user Makefile from directory"
	1717	printf "\n \"$add_source_path\" is used \n"
	1718	sleep 1
	1719	cp $add_source_path/Makefile .
	1720	fi
	1721
[1]	1722	for dateiname in $AddFilenames
	1723	do
	1724	if [[ -f $dateiname ]]
	1725	then
	1726	printf "\n +++ source code file \"$dateiname\" found in additional"
	1727	printf "\n source code directory \"$add_source_path\" "
[211]	1728	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1729	printf "\n from directory \"$source_path\"."
[1]	1730	locat=source; exit
	1731	fi
	1732
	1733	cp $add_source_path/$dateiname .
	1734	source_list="$source_list $dateiname"
	1735
[211]	1736	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1737	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1738	then
	1739	printf "\n\n +++ user file \"$dateiname\" "
	1740	printf "\n is not listed in Makefile \n"
	1741	locat=source; exit
	1742	else
	1743
[1]	1744	# Default User-Interface von der Liste entfernen, falls Datei
	1745	# ein User-Interface enthaelt
[211]	1746	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1747	# then
	1748	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1749	# then
	1750	# rm -rf user_interface.f90
	1751	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1752	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1753	# printf "\n since a user-interface is found in file"
	1754	# printf "\n \"$add_source_path/$dateiname\" \n"
	1755	# sleep 3
	1756	# else
	1757	if [[ $found = false ]]
[1]	1758	then
[211]	1759	found=true
	1760	printf "\n\n *** following user file(s) added to the"
	1761	printf " files to be translated:\n "
[1]	1762	fi
[211]	1763	printf "$dateiname "
	1764	sleep 0.5
[1]	1765	fi
	1766	done
[211]	1767	[[ $found = true ]] && printf "\n"
[1]	1768	cd - > /dev/null
	1769	fi
	1770	fi
	1771
	1772
	1773	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1774	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1775	if [[ $restart_run != true && -n $package_list ]]
[1]	1776	then
	1777
	1778	cd $source_path
	1779
	1780	for package in $package_list
	1781	do
	1782
	1783	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1784
	1785	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1786	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1787	# LIEFERT
	1788	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1789
	1790
	1791	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1792	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1793	for source_list_name in $package_source_list
	1794	do
	1795	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1796	then
	1797
	1798	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1799	ending=`echo $source_list_name \| cut -f2 -d.`
	1800	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1801	then
	1802	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1803	source_list="$source_list $source_list_name"
	1804	fi
	1805	fi
	1806	done
	1807	done
	1808
	1809	cd - > /dev/null
	1810	fi
	1811
	1812
	1813	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1814	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1815	# if [[ "$restart_run" != true ]]
	1816	# then
	1817	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1818	# if [[ ! -f $makefile ]]
	1819	# then
	1820	# printf "\n +++ file \"$makefile\" does not exist"
	1821	# locat=make; exit
	1822	# else
	1823	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1824	# fi
	1825	# fi
[1]	1826
	1827	fi # do_compile=true
	1828
	1829
	1830	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1831	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1832	if [[ $do_compile = true ]]
	1833	then
	1834
	1835	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1836	# ZUSAMMENSETZEN
[83]	1837	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1838	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1839	then
[82]	1840	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1841	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1842	then
[82]	1843	cpp_options="$cpp_options -D__nec"
	1844	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1845	then
	1846	cpp_options="$cpp_options -D__lc"
[1]	1847	else
[82]	1848	cpp_options="$cpp_options -D__$localhost"
[1]	1849	fi
[83]	1850
	1851	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1852	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1853	then
[82]	1854	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1855	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1856	else
[82]	1857	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1858	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1859	fi
[83]	1860
	1861	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1862	if [[ -n $package_list ]]
	1863	then
	1864	for package in $package_list
	1865	do
	1866	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1867	then
	1868	if [[ $package != "dvrp_graphics+1PE" ]]
	1869	then
[82]	1870	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1871	else
[82]	1872	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1873	export use_seperate_pe_for_dvrp_output=true
	1874	fi
	1875	else
	1876	if [[ $package != "dvrp_graphics+1PE" ]]
	1877	then
[82]	1878	cpp_options="$cpp_options -D__$package"
[1]	1879	else
[82]	1880	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1881	export use_seperate_pe_for_dvrp_output=true
	1882	fi
	1883	fi
	1884	done
	1885	fi
[83]	1886
	1887	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1888	if [[ -n $cpp_opts ]]
	1889	then
	1890	for popts in $cpp_opts
	1891	do
[82]	1892	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1893	then
	1894	cpp_options="${cpp_options},-D__$popts=__$popts"
	1895	else
	1896	cpp_options="$cpp_options -D__$popts"
	1897	fi
[1]	1898	done
	1899	fi
	1900
	1901	else
	1902
	1903
	1904	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1905	if [[ $do_remote = false ]]
	1906	then
	1907	if [[ ! -f $executable ]]
	1908	then
	1909	printf "\n +++ executable file: $executable"
	1910	printf "\n does not exist"
	1911	locat=executable; exit
	1912	fi
	1913	fi
	1914	fi
	1915
	1916
	1917	# JOBMODUS FESTSTELLEN
	1918	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1919	then
	1920	jobmo=BATCH
	1921	else
	1922	jobmo=INTERACTIVE
	1923	fi
	1924
	1925
	1926	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1927	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1928	if [[ "$compiler_name" = "" ]]
	1929	then
[82]	1930
[220]	1931	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1932	locat=compiler_name; exit
	1933
[1]	1934	fi
	1935
	1936
[251]	1937	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1938	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1939
	1940
	1941
	1942	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1943	kennung=$RANDOM
	1944	if [[ "$tmp_user_catalog" = "" ]]
	1945	then
[312]	1946	if [[ $localhost = ibmh ]]
[1]	1947	then
[312]	1948	tmp_user_catalog=$SCRATCH
[1]	1949	elif [[ $localhost = nech ]]
	1950	then
	1951	tmp_user_catalog=$WRKSHR
	1952	else
	1953	tmp_user_catalog=/tmp
	1954	fi
	1955	fi
	1956	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1957
	1958
	1959	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1960	# BESTIMMEN
	1961	if [[ "$tmp_data_catalog" = "" ]]
	1962	then
[312]	1963	if [[ $localhost = ibmb ]]
[1]	1964	then
	1965	tmp_data_catalog=$WORK/mrun_restart_data
	1966	elif [[ $localhost = nech ]]
	1967	then
	1968	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1969	else
	1970	tmp_data_catalog=/tmp/mrun_restart_data
	1971	fi
	1972	fi
	1973
	1974
	1975	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1976	# ERSETZEN
	1977	if [[ $do_remote = false && $do_compile = true ]]
	1978	then
	1979	eval fopts=\"$fopts\"
	1980	eval lopts=\"$lopts\"
	1981	fi
	1982
	1983
	1984
	1985	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1986	fopts="$fopts $netcdf_inc $dvr_inc"
	1987	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1988	ROPTS="$ropts"
[367]	1989	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	1990	then
	1991	XOPT="-X $numprocs"
	1992	fi
	1993
	1994
	1995
	1996	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1997	# GRAMM BENOETIGT
	1998	done=false
	1999	while [[ $done = false ]]
	2000	do
	2001	cputime=$cpumax
	2002	if (( $cputime == 0 ))
	2003	then
[246]	2004	if [[ $do_batch = true ]]
	2005	then
	2006	printf "\n +++ cpu-time is undefined"
	2007	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2008	printf "\n >>> "
	2009	read cputime 1>/dev/null 2>&1
	2010	else
	2011	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2012	fi
[1]	2013	else
	2014	done=true
	2015	fi
	2016	cpumax=$cputime
	2017	done
	2018
	2019	(( minuten = cputime / 60 ))
	2020	(( sekunden = cputime - minuten * 60 ))
	2021
	2022
	2023	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2024	if [[ $do_batch = true ]]
	2025	then
	2026	done=false
	2027	while [[ $done = false ]]
	2028	do
	2029	if (( memory == 0 ))
	2030	then
	2031	printf "\n +++ memory demand is undefined"
	2032	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2033	printf "\n >>> "
	2034	read memory 1>/dev/null 2>&1
	2035	else
	2036	done=true
	2037	fi
	2038	done
	2039	fi
	2040
	2041
	2042	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2043	if [[ $do_remote = true && -z $remote_username ]]
	2044	then
	2045	while [[ -z $remote_username ]]
	2046	do
	2047	printf "\n +++ username on remote host \"$host\" is undefined"
	2048	printf "\n >>> Please type username:"
	2049	printf "\n >>> "
	2050	read remote_username
	2051	done
	2052	mc="$mc -u$remote_username"
	2053	fi
	2054
[221]	2055
	2056	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2057	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2058	then
	2059	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2060	fi
	2061
	2062
	2063
[1]	2064	###########################################################################
	2065	# HEADER-AUSGABE
	2066	###########################################################################
	2067
	2068
	2069	calltime=$(date)
	2070	printf "\n"
	2071	# [[ $silent = false ]] && clear
	2072	printf "#--------------------------------------------------------------# \n"
	2073	printf "\| $version$calltime \| \n"
	2074	printf "\| \| \n"
	2075	spalte1="called on:"; spalte2=$localhost_realname
	2076	printf "\| $spalte1$spalte2 \| \n"
	2077	if [[ $local_compile = false ]]
	2078	then
	2079	if [[ $do_remote = true ]]
	2080	then
	2081	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2082	else
	2083	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2084	fi
	2085	else
	2086	spalte1="compiling test only!"; spalte2=""
	2087	fi
	2088	printf "\| $spalte1$spalte2 \| \n"
	2089	if [[ -n $numprocs ]]
	2090	then
	2091	spalte1="number of PEs:"; spalte2=$numprocs
	2092	printf "\| $spalte1$spalte2 \| \n"
	2093	fi
	2094	if [[ -n $tasks_per_node ]]
	2095	then
	2096	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2097	printf "\| $spalte1$spalte2 \| \n"
	2098	fi
	2099	if [[ $threads_per_task != 1 ]]
	2100	then
	2101	spalte1="threads per task:"; spalte2="$threads_per_task"
	2102	printf "\| $spalte1$spalte2 \| \n"
	2103	fi
	2104	printf "\| \| \n"
	2105	if [[ $do_compile = true ]]
	2106	then
[82]	2107	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2108	printf "\| $spalte1$spalte2 \| \n"
[82]	2109	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2110	while [[ "$zeile" != "" ]]
	2111	do
	2112	spalte1=""
	2113	spalte2=$zeile
	2114	printf "\| $spalte1$spalte2 \| \n"
	2115	zeile=$(echo "$zeile" \| cut -c41-)
	2116	done
	2117
[82]	2118	spalte1=compiler-options:; spalte2="$fopts"
[1]	2119	printf "\| $spalte1$spalte2 \| \n"
[82]	2120	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2121	while [[ "$zeile" != "" ]]
	2122	do
	2123	spalte1=""
	2124	spalte2=$zeile
	2125	printf "\| $spalte1$spalte2 \| \n"
	2126	zeile=$(echo "$zeile" \| cut -c41-)
	2127	done
	2128
[82]	2129	spalte1=linker-options:; spalte2=$lopts
[1]	2130	printf "\| $spalte1$spalte2 \| \n"
[82]	2131	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2132	while [[ "$zeile" != "" ]]
	2133	do
	2134	spalte1=""
	2135	spalte2=$zeile
	2136	printf "\| $spalte1$spalte2 \| \n"
	2137	zeile=$(echo "$zeile" \| cut -c41-)
	2138	done
	2139
	2140	spalte1="main program":; spalte2=$mainprog
	2141	printf "\| $spalte1$spalte2 \| \n"
	2142	else
	2143	spalte1=executable:; spalte2=$executable
	2144	printf "\| $spalte1$spalte2 \| \n"
	2145	fi
	2146	printf "\| \| \n"
	2147	spalte1="base name of files":; spalte2=$fname
	2148	printf "\| $spalte1$spalte2 \| \n"
	2149	if [[ $fname != $afname ]]
	2150	then
	2151	spalte1="base name of input files":; spalte2=$afname
	2152	printf "\| $spalte1$spalte2 \| \n"
	2153	fi
	2154	spalte1="INPUT control list":; spalte2=$input_list
	2155	printf "\| $spalte1$spalte2 \| \n"
	2156	spalte1="OUTPUT control list":; spalte2=$output_list
	2157	printf "\| $spalte1$spalte2 \| \n"
	2158
	2159	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2160	then
	2161	spalte1="memory demand / PE":; spalte2="$memory MB"
	2162	printf "\| $spalte1$spalte2 \| \n"
	2163	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2164	printf "\| $spalte1$spalte2 \| \n"
	2165	fi
	2166
	2167	if [[ $do_compile = true ]]
	2168	then
	2169	printf "\| \| \n"
	2170	printf "\| Files to be compiled: \| \n"
	2171	zeile=$source_list
	2172	while [[ "$zeile" != "" ]]
	2173	do
	2174	spalte3=$zeile
	2175	printf "\| $spalte3 \| \n"
	2176	zeile=$(echo "$zeile" \| cut -c61-)
	2177	done
	2178	fi
	2179	printf "#--------------------------------------------------------------#"
	2180
	2181
	2182
	2183	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2184	if [[ $do_trace = true ]]
	2185	then
	2186	(( i = 0 ))
	2187	while (( i < iin ))
	2188	do
	2189	(( i = i + 1 ))
	2190	if (( i == 1 ))
	2191	then
	2192	printf "\n\n >>> INPUT-file assignments:\n"
	2193	fi
	2194	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2195	done
	2196	(( i = 0 ))
	2197	while (( i < iout ))
	2198	do
	2199	(( i = i + 1 ))
	2200	if (( i == 1 ))
	2201	then
	2202	printf "\n\n >>> OUTPUT-file assignments:\n"
	2203	fi
	2204	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2205	done
	2206	(( i = 0 ))
	2207	while (( i < iic ))
	2208	do
	2209	(( i = i + 1 ))
	2210	if (( i == 1 ))
	2211	then
	2212	printf "\n\n >>> INPUT-commands:\n"
	2213	fi
	2214	printf "\n ${in_command[$i]}"
	2215	done
	2216	(( i = 0 ))
	2217	while (( i < ioc ))
	2218	do
	2219	(( i = i + 1 ))
	2220	if (( i == 1 ))
	2221	then
	2222	printf "\n\n >>> OUTPUT-commands:\n"
	2223	fi
	2224	printf "\n ${out_command[$i]}"
	2225	done
	2226	fi
	2227
	2228
	2229	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2230	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2231	then
	2232	antwort=dummy
	2233	printf "\n\n"
	2234	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2235	do
	2236	printf " >>> everything o.k. (y/n) ? "
	2237	read antwort
	2238	done
	2239	if [[ $antwort = n \|\| $antwort = N ]]
	2240	then
	2241	locat=user_abort; (( iec = 0 )); exit
	2242	fi
	2243	if [[ $do_batch = true ]]
	2244	then
	2245	printf " >>> batch-job will be created and submitted"
	2246	else
	2247	if [[ $local_compile = false ]]
	2248	then
	2249	printf " >>> MRUN will now continue to execute on this machine"
	2250	else
	2251	printf " >>> a test compilation will now be carried out on this machine"
	2252	fi
	2253	fi
	2254	fi
	2255
	2256
	2257
	2258
	2259	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2260	# CHENDE AKTIONEN DURCHGEFUEHRT
	2261	if [[ $do_batch = false ]]
	2262	then
	2263
	2264
	2265	# TEMPORAEREN KATALOG ERZEUGEN
	2266	mkdir -p $TEMPDIR
	2267	chmod go+rx $TEMPDIR
	2268	tmpcreate=true
	2269
	2270
	2271	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2272	# TEMPORAERES VERZEICHNIS KOPIEREN
	2273	if [[ $do_compile = true ]]
	2274	then
	2275
	2276	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2277	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2278	if [[ $localhost = nech ]]
	2279	then
	2280	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2281	if mkdir -p $TEMPDIR_COMPILE
	2282	then
	2283	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2284	printf "\n is generated as temporary directory for cross compiling\n"
	2285	else
	2286	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2287	printf "\n needed for cross compilation failed"
	2288	locat=compile
	2289	exit
	2290	fi
	2291	else
	2292	TEMPDIR_COMPILE=$TEMPDIR
	2293	fi
	2294
	2295
[82]	2296	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2297	line=""
	2298	grep "%depository_path" $config_file > tmp_mrun
	2299	while read line
	2300	do
	2301	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2302	then
	2303	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2304	then
[82]	2305	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2306	fi
[82]	2307	fi
	2308	done < tmp_mrun
[1]	2309
[82]	2310	line=""
	2311	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2312	while read line
	2313	do
	2314	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2315	then
[211]	2316	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2317	then
	2318	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2319	fi
[1]	2320	fi
[82]	2321	done < tmp_mrun
[1]	2322
[82]	2323	if [[ "$local_depository_path" = "" ]]
	2324	then
	2325	if [[ "$global_depository_path" != "" ]]
[1]	2326	then
[82]	2327	local_depository_path=$global_depository_path
[1]	2328	else
[82]	2329	printf "\n\n +++ no depository path found in configuration file"
	2330	printf "\n for local host \"$localhost\" "
	2331	printf "\n please set \"\%depository_path\" in configuration file\n"
	2332	locat=config_file; exit
[1]	2333	fi
[82]	2334	fi
	2335	eval local_depository_path=$local_depository_path
[215]	2336	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2337	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2338
[215]	2339
[82]	2340	basename=`print $mainprog \| cut -f1 -d"."`
	2341	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2342	if [[ ! -f $make_depository ]]
	2343	then
	2344	printf "\n"
	2345	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2346	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2347	else
	2348	cp $make_depository $TEMPDIR_COMPILE
[1]	2349	cd $TEMPDIR_COMPILE
[82]	2350	tar -xf $make_depository > /dev/null 2>&1
[1]	2351	cd - > /dev/null
	2352	fi
[82]	2353
	2354	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2355
	2356	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2357	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2358	# MAKEFILE EINTRAGEN
[211]	2359	# cd $TEMPDIR_COMPILE
	2360	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2361	# if [[ "$interface_file" != "" ]]
	2362	# then
	2363	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2364	# mv Makefile Makefile_old
	2365	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2366	# fi
	2367	# cd - > /dev/null
[1]	2368	else
	2369	cp $executable ${TEMPDIR}/a.out
	2370	fi
	2371
	2372
	2373	# WECHSEL IN TEMPORAEREN KATALOG
	2374	cd $TEMPDIR
	2375	printf "\n *** changed to temporary directory: $TEMPDIR"
	2376
	2377
	2378	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2379	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2380	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2381	# ERMITTELN
	2382	(( i = 0 ))
	2383	while (( i < iout ))
	2384	do
	2385	(( i = i + 1 ))
	2386	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2387	then
	2388	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2389	else
	2390	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2391	fi
	2392	done
	2393
	2394
	2395	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2396	if [[ $do_compile = true ]]
	2397	then
	2398
	2399
	2400	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2401	printf "\n\n\n *** compilation starts \n$striche\n"
	2402	printf " *** compilation with make using following options:\n"
[211]	2403	printf " make depository: $make_depository"
[82]	2404	printf " compilername: $compiler_name\n"
	2405	printf " options: $fopts\n"
	2406	printf " preprocessor-directives: $cpp_options \n"
	2407	printf " linker-options: $lopts \n"
	2408	printf " source code files: $source_list \n"
	2409
	2410	if [[ $localhost = nech ]]
[1]	2411	then
[82]	2412	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2413	cp $TEMPDIR_COMPILE/a.out .
	2414	[[ $? != 0 ]] && compile_error=true
	2415	rm -rf $TEMPDIR_COMPILE
[312]	2416	elif [[ $localhost = ibmh ]]
	2417	then
[325]	2418	printf " compiler is called via ssh on \"plogin1\" \n"
	2419	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2420	[[ ! -f a.out ]] && compile_error=true
	2421	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2422	elif [[ $localhost = lcsgib ]]
	2423	then
[221]	2424	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[372]	2425	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2426	[[ ! -f a.out ]] && compile_error=true
	2427	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2428	elif [[ $localhost = lcsgih ]]
	2429	then
[221]	2430	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2431	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2432	[[ ! -f a.out ]] && compile_error=true
	2433	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2434	else
[118]	2435	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2436	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2437	fi
[1]	2438
	2439	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2440	then
	2441	printf "\n +++ error occured while compiling or linking"
	2442	locat=compile
[181]	2443
[182]	2444	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2445	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2446	# then
[181]	2447	exit
[197]	2448	# else
	2449	# locat=normal
	2450	# fi
[1]	2451	else
	2452	printf "$striche\n *** compilation finished \n"
	2453	fi
	2454	fi
	2455
	2456
	2457	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2458	if [[ $local_compile = true ]]
	2459	then
	2460	cd $HOME
	2461	rm -rf $TEMPDIR
	2462	locat=local_compile; exit
	2463	fi
	2464
	2465
	2466	# BEREITSTELLEN DER INPUT-DATEIEN
	2467	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2468	(( i = 0 ))
	2469	while (( i < iin ))
	2470	do
	2471	(( i = i + 1 ))
	2472	if (( i == 1 ))
	2473	then
	2474	printf "\n\n *** providing INPUT-files:\n$striche"
	2475	fi
	2476
	2477
	2478	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2479	if [[ "${transin[$i]}" = unavailable ]]
	2480	then
	2481	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2482	then
	2483	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2484	printf "\n is not available!"
	2485	else
	2486	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2487	printf "\n is not available!"
	2488	fi
	2489	continue
	2490	fi
	2491
	2492	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2493	files_for_pes=false; datentyp=file
	2494	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2495	then
	2496	files_for_pes=true; datentyp=directory
	2497	actionin[$i]=""
	2498	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2499	then
	2500	actionin[$i]=""
	2501	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2502	then
	2503	files_for_pes=true; datentyp=directory
	2504	actionin[$i]="ar"
	2505	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2506	then
	2507	actionin[$i]="ar"
	2508	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2509	then
	2510	files_for_pes=true; datentyp=directory
	2511	actionin[$i]="fl"
	2512	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2513	then
	2514	actionin[$i]="fl"
	2515	fi
	2516
	2517	if [[ $files_for_pes = true ]]
	2518	then
	2519	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2520	else
	2521	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2522	fi
	2523
	2524	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2525	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2526	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2527	# SERVER ZU HOLEN
	2528	if [[ "${actionin[$i]}" = fl ]]
	2529	then
	2530	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2531	if [[ $files_for_pes = false ]]
	2532	then
	2533	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2534	then
	2535	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2536	got_tmp[$i]=true
	2537	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2538	then
	2539	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2540	printf "\n *** trying to use backup copy in \"$WORK\" "
	2541	cp $WORK/${frelin[$i]} ${localin[$i]}
	2542	else
	2543	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2544	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2545	printf "\n *** trying to get copy from archive"
	2546	actionin[$i]=ar
	2547	fi
	2548	else
	2549	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2550	then
	2551	mkdir ${localin[$i]}
[149]	2552	cd $tmp_data_catalog/${frelin[$i]}
	2553	for file in $(ls *)
	2554	do
	2555	ln $file $TEMPDIR/${localin[$i]}
	2556	done
	2557	cd $TEMPDIR
[1]	2558	got_tmp[$i]=true
	2559	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2560	then
	2561	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2562	printf "\n *** trying to use backup copy in \"$WORK\" "
	2563	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2564	else
	2565	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2566	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2567	printf "\n *** trying to get copy from archive"
	2568	actionin[$i]=ar
	2569	fi
	2570	fi
	2571	fi
	2572
	2573
	2574	# DATEI LIEGT AUF ARCHIV-SERVER
	2575	if [[ "${actionin[$i]}" = ar ]]
	2576	then
	2577
	2578	if [[ $files_for_pes = false ]]
	2579	then
	2580	printf "\n file will be restored from archive-system ($archive_system)!"
	2581	else
	2582	printf "\n directory will be restored from archive-system ($archive_system)!"
	2583	fi
	2584
	2585	file_restored=false
	2586
	2587	if [[ $archive_system = asterix ]]
	2588	then
	2589	do_stagein=true
	2590	(( stagein_anz = 0 ))
	2591	while [[ $do_stagein = true ]]
	2592	do
	2593	if [[ $files_for_pes = false ]]
	2594	then
	2595	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2596	else
	2597	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2598	fi
	2599	cat STAGEIN_OUTPUT
	2600	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2601	then
	2602	file_restored=true
	2603	do_stagein=false
	2604	else
	2605	(( stagein_anz = stagein_anz + 1 ))
	2606	if (( stagein_anz == 10 ))
	2607	then
	2608	printf "\n +++ stagein stoped after 10 tries"
	2609	locat=stage
	2610	exit
	2611	fi
	2612	printf "\n +++ restoring from archive failed, trying again:"
	2613	sleep 900
	2614	fi
	2615	done
	2616	elif [[ $archive_system = DMF ]]
	2617	then
	2618	if [[ $files_for_pes = false ]]
	2619	then
	2620	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2621	locat=DMF
	2622	exit
	2623	else
	2624	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2625	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2626	file_restored=true
	2627	fi
	2628	elif [[ $archive_system = tivoli ]]
	2629	then
	2630	if [[ $files_for_pes = false ]]
	2631	then
	2632	if [[ $localhost = ibmh ]]
	2633	then
	2634	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2635	else
	2636	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2637	fi
	2638	else
	2639	(( inode = 0 ))
	2640	while (( inode < nodes ))
	2641	do
	2642	if [[ $localhost = ibmh ]]
	2643	then
	2644	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2645	else
	2646	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2647	fi
	2648	(( inode = inode + 1 ))
	2649	done
	2650	fi
	2651	file_restored=true
	2652	elif [[ $archive_system = ut ]]
	2653	then
	2654	if [[ $files_for_pes = false ]]
	2655	then
	2656	cp $UT/${frelin[$i]} .
	2657	else
	2658	(( inode = 0 ))
	2659	while (( inode < nodes ))
	2660	do
	2661	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2662	(( inode = inode + 1 ))
	2663	done
	2664	fi
	2665	file_restored=true
	2666	else
	2667	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2668	locat=rearchive
	2669	exit
	2670	fi
	2671
	2672	if [[ $file_restored = true ]]
	2673	then
	2674
	2675	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2676	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2677	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2678	if [[ $files_for_pes = false ]]
	2679	then
	2680	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2681	else
	2682	mkdir $tmp_data_catalog/${frelin[$i]}
	2683	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2684	fi
	2685	got_tmp[$i]=true
	2686
	2687	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2688	mv ${frelin[$i]} ${localin[$i]}
	2689
	2690	fi
	2691	fi
	2692
	2693
	2694	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2695	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2696	then
	2697
	2698	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2699	then
	2700
	2701	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2702	printf "\n file will be provided for $numprocs processors"
	2703	mkdir ${localin[$i]}
	2704	ival=$numprocs
	2705	(( ii = 0 ))
	2706	while (( ii <= ival-1 ))
	2707	do
	2708	if (( ii < 10 ))
	2709	then
	2710	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2711	elif (( ii < 100 ))
	2712	then
	2713	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2714	elif (( ii < 1000 ))
	2715	then
	2716	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2717	else
	2718	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2719	fi
	2720	(( ii = ii + 1 ))
	2721	done
	2722
	2723	else
	2724
	2725	if [[ $files_for_pes = true ]]
	2726	then
	2727
	2728	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2729	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2730	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2731	# PER MOVE UMBENANNT WERDEN
	2732	printf "\n providing $numprocs files for the respective processors"
	2733	mkdir ${localin[$i]}
[183]	2734	if [[ $link_local_input = true ]]
	2735	then
	2736	printf " using ln -f\n"
	2737	cd ${absnamein[$i]}
	2738	for file in $(ls *)
	2739	do
	2740	ln -f $file ${localin[$i]}
	2741	done
	2742	cd $TEMPDIR
	2743	fi
	2744	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2745	if [[ ! -f "${localin[$i]}/_0000" ]]
	2746	then
	2747	if [[ $link_local_input = true ]]
	2748	then
	2749	printf " ln failed for .../_0000, using cp...\n"
	2750	fi
	2751	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2752	fi
[1]	2753
	2754	else
	2755	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2756	if [[ $link_local_input = true ]]
	2757	then
	2758	printf " using ln -f\n"
	2759	ln -f ${absnamein[$i]} ${localin[$i]}
	2760	fi
	2761	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2762	if [[ ! -f "${localin[$i]}" ]]
	2763	then
	2764	if [[ $link_local_input = true ]]
	2765	then
	2766	printf " ln failed, using cp...\n"
	2767	fi
	2768	cp ${absnamein[$i]} ${localin[$i]}
	2769	fi
[1]	2770	fi
	2771	fi
	2772	fi
	2773
	2774	done
	2775	if (( i != 0 ))
	2776	then
	2777	printf "\n$striche\n *** all INPUT-files provided \n"
	2778	fi
	2779
	2780
	2781	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2782	(( i = 0 ))
	2783	while (( i < iic ))
	2784	do
	2785	(( i = i + 1 ))
	2786	if (( i == 1 ))
	2787	then
	2788	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2789	fi
	2790	printf "\n >>> ${in_command[$i]}"
	2791	eval ${in_command[$i]}
	2792	if (( i == iic ))
	2793	then
	2794	printf "\n$striche\n"
	2795	fi
	2796	done
	2797
	2798
	2799	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2800	cpurest=${cpumax}.
	2801
	2802
[260]	2803	# START DVR STREAMING SERVER
	2804	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2805	then
	2806	if [[ "$dvr_server" != "" ]]
	2807	then
	2808
	2809	printf "\n\n *** preparing the dvr streaming server configuration file"
	2810
	2811	# Check, if a dvr server is already running
	2812	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2813	if [[ "$running_dvrserver_id" != "" ]]
	2814	then
	2815
[261]	2816	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2817	printf "\n This server is used instead starting a new one!"
[261]	2818	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2819
	2820	else
	2821
	2822	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2823	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2824	then
	2825	cp ${PALM_BIN}/.dvrserver.config .
	2826
	2827	# Entering the BASEDIR, UID and GID into this file
	2828	user_id=`id -u`
	2829	group_id=`id -g`
	2830	# & is needed as seperator, because TEMPDIR contains /
	2831	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2832	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2833	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2834	mv .dvrserver.3 .dvrserver.config
	2835	rm .dvrserver.1 .dvrserver.2
	2836
	2837	# Start dvr server in background, get his id and print on terminal
	2838	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2839	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2840	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2841	local_dvrserver_running=.TRUE.
	2842	else
	2843	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2844	printf "\n \"$PALM_BIN\" "
	2845	locat=dvr
	2846	exit
	2847	fi
	2848
	2849	fi
	2850
	2851	else
	2852	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2853	fi
	2854	fi
	2855
	2856
	2857	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2858	# LESEN VON PALM)
	2859	cat > ENVPAR << %%END%%
	2860	&envpar run_identifier = '$fname', host = '$localhost',
	2861	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2862	maximum_cpu_time_allowed = ${cpumax}.,
	2863	revision = '$global_revision',
	2864	local_dvrserver_running = $local_dvrserver_running /
	2865
	2866	%%END%%
	2867
	2868
[1]	2869	# PROGRAMMSTART
	2870	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2871	PATH=$PATH:$TEMPDIR
	2872
[359]	2873	# MPI debug option (argument checking, slows down execution due to increased latency)
	2874	if [[ "$mpi_debug" = true ]]
	2875	then
	2876	export MPI_CHECK_ARGS=1
	2877	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2878	fi
	2879
[1]	2880	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2881	then
	2882	if [[ "$ENVIRONMENT" = BATCH ]]
	2883	then
[211]	2884	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2885	then
	2886	printf "\n +++ debug is allowed in interactive mode only"
	2887	locat=debug
	2888	exit
	2889	fi
[1]	2890	fi
[5]	2891	if [[ $localhost = decalpha ]]
[1]	2892	then
	2893	dxladebug a.out
	2894	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2895	then
	2896
	2897	# SETUP THE IBM MPI ENVIRONMENT
	2898	export MP_SHARED_MEMORY=yes
	2899	export AIXTHREADS_SCOPE=S
	2900	export OMP_NUM_THREADS=$threads_per_task
	2901	export AUTHSTATE=files
	2902	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2903
	2904	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2905	export MP_ADAPTER_USE=shared
	2906	export MP_CPU_USE=multiple
	2907	export MP_TIMEOUT=1200
	2908
	2909	unset MP_TASK_AFFINITY
	2910
	2911	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2912	#(( ii = 1 ))
	2913	#while (( ii <= $numprocs ))
	2914	#do
	2915	# echo $localhost_realname >> hostfile
	2916	# (( ii = ii + 1 ))
	2917	#done
	2918	#export MP_HOSTFILE=hostfile
	2919
	2920	if [[ "$LOADLBATCH" = yes ]]
	2921	then
	2922	totalview poe a.out $ROPTS
	2923	else
	2924	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2925	export TVDSVRLAUNCHCMD=ssh
	2926	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2927	fi
[211]	2928	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2929	then
	2930	# CURRENTLY NO DEBUGGER ON LCSGI
	2931	if [[ $run_coupled_model = true ]]
	2932	then
	2933	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2934	locat=debug
	2935	exit
[223]	2936	else
	2937	echo "no_coupling" > runfile_atmos
[211]	2938	fi
	2939	(( ii = $numprocs / $threads_per_task ))
	2940	export OMP_NUM_THREADS=$threads_per_task
	2941	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2942	if [[ $threads_per_task != 1 ]]
	2943	then
	2944	printf "\n threads per task: $threads_per_task"
	2945	fi
	2946	printf "\n\n"
[223]	2947	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2948	then
	2949	# export MPI_LAUNCH_TIMEOUT=360
	2950	if [[ "$totalview" = true ]]
	2951	then
	2952	printf "\n running totalview debugger"
	2953	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2954	else
	2955	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2956	fi
	2957	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2958	then
	2959	# ulimit -s 300000 # A too large stack size causes problems
	2960	# export MV2_NUM_PORTS=2
	2961	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2962	if [[ "$totalview" = true ]]
	2963	then
	2964	printf "\n running totalview debugger"
	2965	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2966	else
	2967	mpiexec ./a.out $ROPTS < runfile_atmos
	2968	fi
[223]	2969	fi
[1]	2970	else
	2971	printf "\n +++ no debug available on \"$localhost\" "
	2972	printf "\n or not implemented in mrun so far"
	2973	locat=debug
	2974	exit
	2975	fi
	2976	else
	2977	if [[ -n $numprocs ]]
	2978	then
	2979	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2980	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2981	then
	2982	# SETUP THE IBM MPI ENVIRONMENT
[312]	2983	if [[ $host != ibmh ]]
	2984	then
	2985	export MP_SHARED_MEMORY=yes
	2986	export AIXTHREAD_SCOPE=S
	2987	export OMP_NUM_THREADS=$threads_per_task
	2988	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2989	export AUTHSTATE=files
	2990	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2991	# export MP_PRINTENV=yes
[1]	2992
[312]	2993	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2994	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2995	export MP_WAIT_MODE=poll
	2996	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2997	fi
[1]	2998	if [[ "$LOADLBATCH" = yes ]]
	2999	then
	3000	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	3001	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3002	then
[102]	3003	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3004	else
[343]	3005	if [[ $run_coupled_model = false ]]
	3006	then
	3007	if [[ "$ocean_file_appendix" = true ]]
	3008	then
	3009	echo "precursor_ocean" > runfile_atmos
	3010	else
	3011	echo "precursor_atmos" > runfile_atmos
	3012	fi
	3013	else
	3014	(( iia = $numprocs_atmos / $threads_per_task ))
	3015	(( iio = $numprocs_ocean / $threads_per_task ))
	3016	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3017	printf "\n using $coupled_mode coupling"
	3018	printf "\n\n"
	3019	echo "coupled_run $iia $iio" > runfile_atmos
	3020	fi
	3021	poe ./a.out $ROPTS < runfile_atmos
[1]	3022	fi
	3023	else
	3024	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3025	then
[102]	3026	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3027	elif [[ $localhost = ibmy ]]
	3028	then
	3029	if [[ -f $hostfile ]]
	3030	then
	3031	cp $hostfile hostfile
	3032	else
	3033	(( ii = 1 ))
	3034	while (( ii <= $numprocs ))
	3035	do
	3036	echo $localhost_realname >> hostfile
	3037	(( ii = ii + 1 ))
	3038	done
	3039	fi
	3040	export MP_HOSTFILE=hostfile
[331]	3041	if [[ $run_coupled_model = false ]]
	3042	then
	3043	if [[ "$ocean_file_appendix" = true ]]
	3044	then
	3045	echo "precursor_ocean" > runfile_atmos
	3046	else
	3047	echo "precursor_atmos" > runfile_atmos
	3048	fi
	3049	else
	3050	(( iia = $numprocs_atmos / $threads_per_task ))
	3051	(( iio = $numprocs_ocean / $threads_per_task ))
	3052	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3053	printf "\n using $coupled_mode coupling"
	3054	printf "\n\n"
	3055	echo "coupled_run $iia $iio" > runfile_atmos
	3056	fi
	3057	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3058
[1]	3059	else
	3060	if [[ "$host_file" = "" ]]
	3061	then
	3062	printf "\n +++ no hostfile given in configuration file"
	3063	locat=config_file
	3064	exit
	3065	else
	3066	eval host_file=$host_file
	3067	fi
	3068	export MP_HOSTFILE=$host_file
[102]	3069	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3070	fi
	3071	fi
[251]	3072	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3073	then
	3074	(( ii = nodes ))
	3075	if [[ $ii = 1 ]]
	3076	then
	3077	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3078	export MPIPROGINF=YES
[61]	3079	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3080	echo "*** execution on single node with mpirun"
[102]	3081	mpirun -np $numprocs ./a.out $ROPTS
[1]	3082	else
	3083	(( i = 0 ))
	3084	while (( i < ii ))
	3085	do
	3086	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3087	(( i = i + 1 ))
	3088	done
	3089
	3090	echo "#!/bin/sh" > mpi_exec_shell
	3091	echo " " >> mpi_exec_shell
	3092	echo "set -u" >> mpi_exec_shell
	3093	echo "F_ERRCNT=0" >> mpi_exec_shell
	3094	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3095	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3096	echo "cpurest=$cpurest" >> mpi_exec_shell
	3097	echo "fname=$fname" >> mpi_exec_shell
	3098	echo "localhost=$localhost" >> mpi_exec_shell
	3099	echo "return_addres=$return_addres" >> mpi_exec_shell
	3100	echo "return_username=$return_username" >> mpi_exec_shell
	3101	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3102	echo "write_binary=$write_binary" >> mpi_exec_shell
	3103	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3104	echo " " >> mpi_exec_shell
	3105	echo "export F_ERRCNT" >> mpi_exec_shell
	3106	echo "export MPIPROGINV" >> mpi_exec_shell
	3107	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3108	echo "export cpurest" >> mpi_exec_shell
	3109	echo "export fname" >> mpi_exec_shell
	3110	echo "export localhost" >> mpi_exec_shell
	3111	echo "export return_addres" >> mpi_exec_shell
	3112	echo "export return_username" >> mpi_exec_shell
	3113	echo "export tasks_per_node" >> mpi_exec_shell
	3114	echo "export write_binary" >> mpi_exec_shell
	3115	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3116	echo " " >> mpi_exec_shell
[102]	3117	echo "exec ./a.out" >> mpi_exec_shell
[1]	3118
	3119	chmod u+x mpi_exec_shell
	3120	export MPIPROGINF=YES
	3121	mpirun -f multinode_config &
	3122	wait
	3123
	3124	fi
[82]	3125	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3126	then
	3127
	3128	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3129	# DOES NOT EXIST
[179]	3130	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3131	then
[179]	3132	if [[ -f $hostfile ]]
	3133	then
	3134	cp $hostfile hostfile
	3135	else
	3136	(( ii = 1 ))
	3137	while (( ii <= $numprocs / $threads_per_task ))
	3138	do
	3139	echo $localhost_realname >> hostfile
	3140	(( ii = ii + 1 ))
	3141	done
	3142	fi
	3143	eval zeile=\"`head -n $ii hostfile`\"
	3144	printf "\n *** running on: $zeile"
[1]	3145	fi
[179]	3146
[1]	3147	(( ii = $numprocs / $threads_per_task ))
	3148	export OMP_NUM_THREADS=$threads_per_task
[246]	3149	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3150	if [[ $threads_per_task != 1 ]]
	3151	then
	3152	printf "\n threads per task: $threads_per_task"
	3153	fi
[102]	3154	if [[ $run_coupled_model = false ]]
[1]	3155	then
[291]	3156	if [[ "$ocean_file_appendix" = true ]]
	3157	then
	3158	echo "precursor_ocean" > runfile_atmos
	3159	else
	3160	echo "precursor_atmos" > runfile_atmos
	3161	fi
[102]	3162	printf "\n\n"
[179]	3163	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3164	then
[221]	3165	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3166	then
[366]	3167	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3168	# export MPI_DSM_DISTRIBUTE=1
	3169	# MPI_DSM_CPULIST: pin MPI processes to cores
[374]	3170	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
[366]	3171	# MPI_IB_RAILS: use both IB rails on ICE2
	3172	export MPI_BUFS_PER_HOST=512
	3173	export MPI_IB_RAILS=2
[369]	3174	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
	3175	export MPI_CONNECTIONS_THRESHOLD=8192
[223]	3176	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3177	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3178	then
[374]	3179	export MV2_NUM_PORTS=2
	3180	export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
[325]	3181	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3182	fi
[179]	3183	elif [[ $host = lcxt4 ]]
	3184	then
[223]	3185	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3186	else
[223]	3187	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3188	fi
[1]	3189	else
[164]	3190
[206]	3191	# currently there is no full MPI-2 support on ICE and XT4
	3192	(( iia = $numprocs_atmos / $threads_per_task ))
	3193	(( iio = $numprocs_ocean / $threads_per_task ))
	3194	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3195	printf "\n using $coupled_mode coupling"
[102]	3196	printf "\n\n"
[164]	3197
[206]	3198	if [[ $coupled_mode = "mpi2" ]]
[164]	3199	then
[206]	3200	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3201	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3202	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3203	then
[197]	3204
[221]	3205	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3206	then
	3207	# export MPI_LAUNCH_TIMEOUT=360
	3208	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3209	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3210	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3211	then
	3212	# ulimit -s 300000 # A too large stack size causes problems
	3213	# export MV2_NUM_PORTS=2
	3214	# export MV2_CPU_MAPPING=0:1:2:3
	3215	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3216	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3217	fi
[197]	3218
[206]	3219	elif [[ $host = lcxt4 ]]
	3220	then
[197]	3221
[206]	3222	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3223	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3224
	3225	else
	3226	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3227	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3228	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3229	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3230	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3231	fi
	3232	wait
	3233
[164]	3234	else
	3235
[206]	3236	echo "coupled_run $iia $iio" > runfile_atmos
	3237	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3238	then
	3239
[221]	3240	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3241	then
	3242	# export MPI_LAUNCH_TIMEOUT=360
	3243	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3244	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3245	then
	3246	# ulimit -s 300000 # A too large stack size causes problems
	3247	# export MV2_NUM_PORTS=2
	3248	# export MV2_CPU_MAPPING=0:1:2:3
	3249	mpiexec ./a.out $ROPTS < runfile_atmos
	3250	fi
[206]	3251
	3252	elif [[ $host = lcxt4 ]]
	3253	then
	3254
	3255	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3256
[367]	3257	elif [[ $host = lck ]]
	3258	then
	3259	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3260	fi
	3261	wait
[164]	3262	fi
[102]	3263
	3264	# if [[ $scirocco = true ]]
	3265	# then
	3266	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3267	# else
	3268	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3269	# fi
[206]	3270	fi
[1]	3271	elif [[ $host = decalpha ]]
	3272	then
[102]	3273	dmpirun -np $numprocs a.out $ROPTS
[1]	3274	elif [[ $host = lctit ]]
	3275	then
	3276	export runfile=runfile.$kennung
	3277
	3278	echo "cd $PWD" > $runfile
	3279	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3280	echo "export cpurest=$cpurest" >> $runfile
	3281	echo "export fname=$fname" >> $runfile
	3282	echo "export localhost=$localhost" >> $runfile
	3283	echo "export return_addres=$return_addres" >> $runfile
	3284	echo "export return_username=$return_username" >> $runfile
	3285	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3286	echo "export write_binary=$write_binary" >> $runfile
	3287	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3288	echo "./a.out" >> $runfile
	3289	chmod u+x $runfile
	3290
	3291	if [[ "$QUEUE" = interactive ]]
	3292	then
[102]	3293	mpirun -np $numprocs a.out $ROPTS
[1]	3294	else
[127]	3295	(( mem_tsubame = $memory / 1024.0 ))
	3296	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3297	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3298	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3299	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3300	fi
	3301
	3302	rm $runfile
	3303	else
[102]	3304	mpprun -n $numprocs a.out $ROPTS
[1]	3305	fi
	3306	[[ $? != 0 ]] && execution_error=true
	3307
	3308
	3309	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3310	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3311	then
	3312	apprentice
	3313	fi
	3314	else
[102]	3315	a.out $ROPTS
[1]	3316	fi
	3317	fi
	3318	if [[ $? != 0 \|\| $execution_error = true ]]
	3319	then
	3320
	3321	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3322	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3323	printf "\n +++ runtime error occured"
	3324	locat=execution
	3325	exit
	3326	else
[102]	3327	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3328	printf "\n$striche\n *** execution finished \n"
[260]	3329
[261]	3330	# Stop the dvr streaming server and process the dvr output in order
	3331	# to create dvrs- and html-files containing all streams
[260]	3332	if [[ "$dvrserver_id" != "" ]]
	3333	then
	3334	kill $dvrserver_id
	3335	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3336
[262]	3337	# If there is a directory, data have been output by the
	3338	# streaming server. Otherwise, user has chosen dvrp_output=local
	3339	if [[ -d DATA_DVR ]]
	3340	then
[261]	3341
[262]	3342	# Add the current dvr configuration file to the dvr output
	3343	# directory
	3344	cp .dvrserver.config DATA_DVR
	3345
	3346	# Process the dvr output (option -s for also generating
	3347	# sequence mode data)
	3348	process_dvr_output -d DATA_DVR -f $fname -s
	3349
	3350	else
	3351
	3352	# Process the local output
	3353	process_dvr_output -l -d DATA_DVR -f $fname
	3354
	3355	fi
	3356
	3357	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3358	then
	3359
	3360	# Process dvr output generated in local mode (dvrp_output=local)
	3361	process_dvr_output -l -d DATA_DVR -f $fname
	3362
[260]	3363	fi
[1]	3364	fi
	3365
	3366
	3367
	3368	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3369	(( i = 0 ))
	3370	while (( i < ioc ))
	3371	do
	3372	(( i = i + 1 ))
	3373	if (( i == 1 ))
	3374	then
	3375	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3376	fi
	3377	printf "\n >>> ${out_command[$i]}"
	3378	eval ${out_command[$i]}
	3379	if (( i == ioc ))
	3380	then
	3381	printf "\n$striche\n"
	3382	fi
	3383	done
	3384
	3385
	3386	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3387	if [[ $do_trace = true ]]
	3388	then
	3389	printf "\n\n"
	3390	ls -al
	3391	fi
	3392
	3393
	3394
	3395	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3396	(( i = 0 ))
	3397	while (( i < iout ))
	3398	do
	3399	(( i = i + 1 ))
	3400	if (( i == 1 ))
	3401	then
	3402	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3403	fi
	3404
	3405	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3406	files_for_pes=false; filetyp=file
	3407	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3408	then
	3409	files_for_pes=true; filetyp=directory
	3410	actionout[$i]=""
	3411	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3412	then
	3413	actionout[$i]=""
	3414	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3415	then
	3416	files_for_pes=true; filetyp=directory
	3417	actionout[$i]="ar"
	3418	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3419	then
	3420	actionout[$i]="ar"
	3421	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3422	then
	3423	files_for_pes=true; filetyp=directory
	3424	actionout[$i]="fl"
	3425	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3426	then
	3427	actionout[$i]="fl"
	3428	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3429	then
	3430	files_for_pes=true; filetyp=directory
	3431	actionout[$i]="tr"
	3432	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3433	then
	3434	actionout[$i]="tr"
	3435	fi
	3436
	3437	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3438	then
	3439	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3440	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3441	then
	3442	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3443	else
	3444
	3445
	3446	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3447	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3448	# REMOTE-RECHNUNGEN
	3449	if [[ "${actionout[$i]}" = tr ]]
	3450	then
	3451	if [[ $localhost != $fromhost ]]
	3452	then
	3453	if [[ $files_for_pes = false ]]
	3454	then
	3455	cps=""
	3456	cst=""
	3457	else
	3458	cps=-c
	3459	cst="/"
	3460	fi
[325]	3461	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3462	then
	3463
	3464	# TRANSFER IN EIGENSTAENDIGEM JOB
	3465	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3466	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3467	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3468	if [[ $files_for_pes = false ]]
	3469	then
	3470	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3471	else
	3472	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3473	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3474	fi
	3475
	3476	echo "set -x" > transfer_${localout[$i]}
	3477	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3478
	3479	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3480	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3481	printf "\n or higher cycle\n"
	3482	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3483
[1]	3484	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3485
	3486	if [[ $localhost = nech ]]
	3487	then
[82]	3488	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3489	else
	3490	if [[ "$LOGNAME" = b323013 ]]
	3491	then
[164]	3492	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3493	else
[164]	3494	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3495	fi
	3496	fi
	3497
	3498	else
	3499
	3500	# TRANSFER INNERHALB DIESES JOBS
	3501	transfer_failed=false
[82]	3502	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3503	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3504	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3505	[[ $? != 0 ]] && transfer_failed=true
[1]	3506
	3507	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3508	# LOKALER MASCHINE ANLEGEN
	3509	if [[ $transfer_failed = true ]]
	3510	then
	3511	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3512	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3513
	3514	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3515	# ANLEGEN.
	3516	eval local_catalog=${pathout[$i]}
	3517	if [[ ! -d $local_catalog ]]
	3518	then
	3519	printf " *** local directory does not exist. Trying to create:\n"
	3520	printf " $local_catalog \n"
	3521	mkdir -p $local_catalog
	3522	fi
	3523	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3524	transfer_problems=true
	3525	fi
	3526	fi
	3527	else
	3528
	3529	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3530	actionout[$i]=""
	3531	fi
	3532	fi
	3533
	3534
	3535	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3536	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3537	# REMOTE-RECHNUNGEN
	3538	if [[ "${actionout[$i]}" = tra ]]
	3539	then
	3540	if [[ $localhost != $fromhost ]]
	3541	then
	3542	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3543	then
	3544
	3545	# TRANSFER IN EIGENSTAENDIGEM JOB
	3546	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3547	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3548	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3549	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3550
	3551	echo "set -x" > transfer_${localout[$i]}
	3552	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3553
	3554	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3555	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3556	printf "\n or higher cycle\n"
	3557	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3558
[1]	3559	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3560
	3561	if [[ $localhost = nech ]]
	3562	then
[82]	3563	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3564	else
	3565	if [[ $LOGNAME = b323013 ]]
	3566	then
[164]	3567	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3568	else
[164]	3569	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3570	fi
	3571	fi
	3572
	3573	else
	3574
	3575	# TRANSFER INNERHALB DIESES JOBS
	3576	transfer_failed=false
[82]	3577	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3578	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3579	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3580	[[ $? != 0 ]] && transfer_failed=true
[1]	3581
	3582	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3583	# LOKALER MASCHINE ANLEGEN
	3584	if [[ $transfer_failed = true ]]
	3585	then
	3586	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3587	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3588
	3589	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3590	# ANLEGEN
	3591	eval local_catalog=${pathout[$i]}
	3592	if [[ ! -d $local_catalog ]]
	3593	then
	3594	printf " *** local directory does not exist. Trying to create:\n"
	3595	printf " $local_catalog \n"
	3596	mkdir -p $local_catalog
	3597	fi
	3598
	3599	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3600	transfer_problems=true
	3601	fi
	3602	fi
	3603	else
	3604
	3605	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3606	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3607	actionout[$i]=a
	3608	fi
	3609	fi
	3610
	3611
	3612	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3613	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3614	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3615	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3616	if [[ "${actionout[$i]}" = fl ]]
	3617	then
	3618	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3619	chmod g+rx $tmp_data_catalog
	3620	if [[ $files_for_pes = false ]]
	3621	then
	3622	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3623	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3624	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3625	else
	3626	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3627	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3628	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3629	cd ${localout[$i]}
	3630	for file in $(ls *)
	3631	do
	3632	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3633	done
	3634	cd $TEMPDIR
[1]	3635	fi
	3636
	3637
	3638	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3639	if [[ $store_on_archive_system = true ]]
	3640	then
	3641
	3642	if [[ $archive_system = asterix ]]
	3643	then
	3644	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3645	if [[ $files_for_pes = false ]]
	3646	then
	3647	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3648	else
	3649	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3650	fi
	3651	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3652	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3653	echo "then" >> archive_${frelout[$i]}
	3654	echo " do_stageout=false" >> archive_${frelout[$i]}
	3655	echo "else" >> archive_${frelout[$i]}
	3656	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3657	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3658	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3659	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3660	if [[ $files_for_pes = false ]]
	3661	then
	3662	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3663	else
	3664	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3665	fi
	3666	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3667	echo "fi" >> archive_${frelout[$i]}
	3668	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3669	elif [[ $archive_system = DMF ]]
	3670	then
	3671	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3672	if [[ $files_for_pes = false ]]
	3673	then
	3674	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3675	locat=DMF
	3676	exit
	3677	else
	3678	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3679	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3680	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3681	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3682	fi
	3683	elif [[ $archive_system = tivoli ]]
	3684	then
	3685	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3686	if [[ $files_for_pes = false ]]
	3687	then
	3688	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3689	echo "set -x" >> archive_${frelout[$i]}
	3690	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3691	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3692	else
	3693
	3694	echo "set -x" >> archive_${frelout[$i]}
	3695	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3696	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3697	cd $tmp_data_catalog
	3698	all_files=`ls -1 ${frelout[$i]}/*`
	3699	cd - > /dev/null
	3700	(( inode = 0 ))
	3701	(( tp1 = tasks_per_node + 1 ))
	3702	while (( inode < nodes ))
	3703	do
	3704	# echo "*** all_files = \"$all_files\" "
	3705	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3706	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3707	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3708	# echo "*** files = \"$files\" "
	3709	# echo "*** all_files = \"$all_files\" "
	3710	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3711	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3712	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3713	(( inode = inode + 1 ))
	3714	done
	3715	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3716	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3717	fi
	3718	elif [[ $archive_system = ut ]]
	3719	then
	3720	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3721	if [[ $files_for_pes = false ]]
	3722	then
	3723	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3724	echo "set -x" >> archive_${frelout[$i]}
	3725	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3726	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3727	else
	3728
	3729	echo "set -x" >> archive_${frelout[$i]}
	3730	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3731	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3732	cd $tmp_data_catalog
	3733	all_files=`ls -1 ${frelout[$i]}/*`
	3734	cd - > /dev/null
	3735	(( inode = 0 ))
	3736	(( tp1 = tasks_per_node + 1 ))
	3737	while (( inode < nodes ))
	3738	do
	3739	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3740	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3741	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3742	(( inode = inode + 1 ))
	3743	done
	3744	fi
	3745	elif [[ $archive_system = none ]]
	3746	then
	3747	printf " +++ archiving on $localhost not available!\n"
	3748	fi
	3749
	3750	if [[ $archive_system != none ]]
	3751	then
	3752	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3753	then
[164]	3754	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3755	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3756	elif [[ $localhost = nech ]]
	3757	then
[82]	3758	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3759	fi
	3760	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3761	fi
	3762	else
	3763	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3764	fi
	3765
	3766
	3767	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3768	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3769	if [[ $files_for_pes = false ]]
	3770	then
	3771	cat /dev/null > ${pathout[$i]}
	3772	else
	3773	mkdir -p ${pathout[$i]}
	3774	fi
	3775
	3776	fi
	3777
	3778
	3779	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3780	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3781	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3782	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3783	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3784	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3785	if [[ "${actionout[$i]}" = ar ]]
	3786	then
	3787	if [[ $files_for_pes = false ]]
	3788	then
	3789	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3790	printf "\n ${pathout[$i]}"
	3791	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3792	else
	3793	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3794	printf "\n ${pathout[$i]}"
	3795	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3796	fi
	3797	mv ${localout[$i]} ${frelout[$i]}
	3798
	3799	file_saved=false
	3800
	3801	if [[ $archive_system = asterix ]]
	3802	then
	3803	do_stageout=true
	3804	(( stageout_anz = 0 ))
	3805	while [[ $do_stageout = true ]]
	3806	do
	3807	if [[ $files_for_pes = false ]]
	3808	then
	3809	stageout ${frelout[$i]} > STAGE_OUTPUT
	3810	else
	3811	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3812	fi
	3813	cat STAGE_OUTPUT
	3814	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3815	then
	3816	file_saved=true
	3817	do_stageout=false
	3818	else
	3819	if [[ $files_for_pes = false ]]
	3820	then
	3821	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3822	else
	3823	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3824	fi
	3825	(( stageout_anz = stageout_anz + 1 ))
	3826	if (( stageout_anz == 10 ))
	3827	then
	3828	printf "\n +++ stoped after 10 unsuccessful tries!"
	3829	archive_save=false
	3830	do_stageout=false
	3831	else
	3832	printf "\n *** new try to store on archive after 15 min:"
	3833	sleep 900
	3834	fi
	3835	fi
	3836	done
	3837	elif [[ $archive_system = DMF ]]
	3838	then
	3839	if [[ $files_for_pes = false ]]
	3840	then
	3841	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3842	locat=DMF
	3843	exit
	3844	else
	3845	rm -rf $ARCHIVE/${frelout[$i]}
	3846	cp -r ${frelout[$i]} $ARCHIVE
	3847	fi
	3848	file_saved=true
	3849	elif [[ $archive_system = tivoli ]]
	3850	then
	3851	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3852	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3853	# GELEGT WERDEN
	3854	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3855	chmod g+rx $tmp_data_catalog
	3856	if [[ $files_for_pes = false ]]
	3857	then
	3858	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3859	else
	3860	mkdir $tmp_data_catalog/${frelout[$i]}
	3861	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3862	fi
	3863
	3864	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3865	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3866	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3867	if [[ $files_for_pes = false ]]
	3868	then
	3869	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3870	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3871	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3872	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3873	else
	3874	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3875	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3876	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3877	fi
	3878
[164]	3879	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3880	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3881	file_saved=true
	3882
	3883	elif [[ $archive_system = ut ]]
	3884	then
	3885	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3886	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3887	# GELEGT WERDEN
	3888	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3889	chmod g+rx $tmp_data_catalog
	3890	if [[ $files_for_pes = false ]]
	3891	then
	3892	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3893	else
	3894	mkdir $tmp_data_catalog/${frelout[$i]}
	3895	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3896	fi
	3897
	3898	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3899	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3900	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3901	if [[ $files_for_pes = false ]]
	3902	then
	3903	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3904	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3905	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3906	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3907	else
	3908	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3909	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3910	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3911	fi
	3912
[82]	3913	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3914	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3915	file_saved=true
	3916
	3917	else
	3918	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3919	archive_save=false
	3920	fi
	3921	if [[ $file_saved = true ]]
	3922	then
	3923	if [[ $files_for_pes = false ]]
	3924	then
	3925	cat /dev/null > ${pathout[$i]}
	3926	else
	3927	mkdir -p ${pathout[$i]}
	3928	fi
	3929	fi
	3930	fi
	3931
	3932	# APPEND AUF LOKALER MASCHINE
	3933	if [[ "${actionout[$i]}" = "a" ]]
	3934	then
	3935	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3936	cat ${localout[$i]} >> ${pathout[$i]}
	3937	fi
	3938
	3939	# KOPIEREN AUF LOKALER MASCHINE
	3940	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3941	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3942	then
	3943
	3944	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3945	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3946	then
	3947	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3948	if [[ $link_local_output = true ]]
	3949	then
	3950	printf " using ln -f\n"
	3951	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3952	fi
	3953	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3954	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3955	then
	3956	if [[ $link_local_output = true ]]
	3957	then
	3958	printf " ln failed, using cp...\n"
	3959	fi
	3960	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3961	fi
[1]	3962	else
	3963	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3964	if [[ $link_local_output = true ]]
	3965	then
	3966	printf " using ln -f\n"
	3967	ln -f ${localout[$i]} ${pathout[$i]}
	3968	fi
	3969	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3970	if [[ ! -f "${pathout[$i]}" ]]
	3971	then
	3972	if [[ $link_local_output = true ]]
	3973	then
	3974	printf " ln failed, using cp...\n"
	3975	fi
	3976	cp ${localout[$i]} ${pathout[$i]}
	3977	fi
[1]	3978	fi
	3979
	3980	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3981	then
	3982
	3983	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3984	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3985	# WIRD DANN KOPIERT
	3986	# PER MOVE UMBENANNT WERDEN
	3987	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3988	if [[ $link_local_output = true ]]
	3989	then
	3990	printf " using ln -f\n"
	3991	mkdir ${pathout[$i]}
	3992	cd ${localout[$i]}
	3993	for file in $(ls *)
	3994	do
	3995	ln -f $file ${pathout[$i]}
	3996	done
	3997	cd $TEMPDIR
	3998	fi
	3999	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	4000	if [[ ! -f "${pathout[$i]}/_0000" ]]
	4001	then
	4002	if [[ $link_local_output = true ]]
	4003	then
	4004	printf " ln failed for .../_0000, using cp...\n"
	4005	fi
	4006	cp -r ${localout[$i]} ${pathout[$i]}
	4007	fi
[1]	4008
	4009	fi
	4010	fi
	4011	done
	4012	if (( i != 0 ))
	4013	then
	4014	if [[ $transfer_problems = true ]]
	4015	then
	4016	printf "\n$striche\n *** OUTPUT-files saved"
	4017	printf "\n +++ WARNING: some data transfers failed! \n"
	4018	else
	4019	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4020	fi
	4021	fi
	4022
	4023
	4024	# EVENTUELL FOLGEJOB STARTEN
	4025	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4026	if [[ -f CONTINUE_RUN ]]
	4027	then
	4028
	4029	if [[ $archive_save = true ]]
	4030	then
	4031
	4032	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4033	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4034	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4035	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4036	# HANDEN
	4037	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4038	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4039	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4040	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4041	then
	4042	mc=`echo $mc \| sed 's/#/f/g'`
	4043	fi
	4044
	4045
	4046	# JOB STARTEN
	4047	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4048	echo " $mc"
	4049	printf "\n$striche\n"
	4050	if [[ $localhost != $fromhost ]]
	4051	then
	4052
[204]	4053	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4054	then
	4055	echo "*** ssh will be used to initiate restart-runs!"
	4056	echo " return_addres=\"$return_addres\" "
	4057	echo " return_username=\"$return_username\" "
	4058	if [[ $return_addres = 172.20.25.41 ]]
	4059	then
	4060	# WORKAROUND AUF SCIROCCO AM TIT
[374]	4061	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
	4062	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
	4063	then
	4064	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4065	else
[33]	4066	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4067	fi
	4068	else
	4069	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4070	locat=restart; exit
	4071	fi
	4072
	4073	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4074	# DER AKTUELLE JOB ENDET
	4075	sleep 30
	4076
	4077	else
	4078
	4079	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4080	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4081	cd $LOCAL_PWD
[108]	4082	if [[ $localhost = lcfimm ]]
	4083	then
	4084	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4085	else
	4086	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4087	fi
[1]	4088	cd - > /dev/null
	4089	fi
	4090	printf "\n$striche\n *** restart-run initiated \n"
	4091
	4092
	4093	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4094	# GEHOLT WORDEN SIND, LOESCHEN
	4095	(( i = 0 ))
	4096	while (( i < iin ))
	4097	do
	4098	(( i = i + 1 ))
	4099	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4100	then
	4101	rm -r $tmp_data_catalog/${frelin[$i]}
	4102	fi
	4103	done
	4104
	4105	else
	4106
	4107	printf "\n +++ no restart-run possible, since errors occured"
	4108	printf "\n during the archive process"
	4109	fi
	4110
	4111	fi
	4112
	4113
	4114
	4115	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4116	if [[ "$email_notification" != "none" ]]
[1]	4117	then
	4118
	4119	if [[ $localhost != $fromhost ]]
	4120	then
	4121	if [[ -f CONTINUE_RUN ]]
	4122	then
	4123	echo "PALM restart run necessary" > email_text
	4124	echo "description header of actual run:" >> email_text
	4125	cat CONTINUE_RUN >> email_text
	4126	echo "mrun-command to restart:" >> email_text
	4127	echo "$mc" >> email_text
	4128	else
	4129	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4130	fi
	4131	mail $email_notification < email_text
	4132	printf "\n *** email notification sent to \"$email_notification\" "
	4133	fi
	4134	fi
	4135
	4136
	4137
	4138	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4139	cd $HOME
	4140	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4141
	4142	else
	4143
	4144
	4145	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4146	# CHENDE AKTIONEN DURCHGEFUEHRT
	4147
	4148	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4149	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4150	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4151	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4152	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4153	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4154	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4155	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4156	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4157	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4158	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4159	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4160	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4161	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4162	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4163	if [[ $use_openmp = true ]]
	4164	then
	4165	mrun_com=${mrun_com}" -O"
	4166	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4167	else
	4168	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4169	fi
	4170	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4171	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4172	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4173	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4174	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4175	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4176	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4177	if [[ $do_remote = true ]]
	4178	then
	4179	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4180	fi
	4181
	4182
	4183	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4184	jobfile=jobfile.$RANDOM
	4185
	4186
	4187	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4188	echo "mkdir $TEMPDIR" >> $jobfile
	4189	echo "cd $TEMPDIR" >> $jobfile
	4190
	4191
	4192	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4193	if [[ $do_trace = true ]]
	4194	then
	4195	echo "set -x" >> $jobfile
	4196	else
	4197	echo "set +vx" >> $jobfile
	4198	fi
	4199
	4200
[191]	4201	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4202	# DATEI FUER DEN JOB
	4203	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4204	then
	4205
[191]	4206	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4207	# KOPIEREN
	4208	if [[ $restart_run != true ]]
	4209	then
	4210	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4211	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4212	fi
[1]	4213
[191]	4214	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4215	echo "set -x" >> $jobfile
	4216	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4217	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4218
[193]	4219	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4220	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4221	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4222	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4223	echo "execute_mrun=true" >> $jobfile
	4224	echo " " >> $jobfile
	4225
[191]	4226	else
	4227
	4228	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4229	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4230	if [[ $do_compile = true ]]
	4231	then
	4232
	4233	source_catalog=SOURCES_FOR_RUN_$fname
	4234
	4235	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4236	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4237	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4238	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4239	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4240	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4241
	4242	for filename in $source_list
	4243	do
	4244	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4245	echo "cat > $filename << \"%END%\"" >> $jobfile
	4246	cat $source_catalog/$filename >> $jobfile
	4247	echo " " >> $jobfile
	4248	echo "%END%" >> $jobfile
	4249	echo " " >> $jobfile
	4250	done
	4251
[1]	4252	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4253	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4254	cat $source_catalog/Makefile >> $jobfile
[1]	4255	echo " " >> $jobfile
	4256	echo "%END%" >> $jobfile
	4257	echo " " >> $jobfile
	4258
[191]	4259	echo "cd - > /dev/null" >> $jobfile
[1]	4260
[191]	4261	fi
[1]	4262
	4263
[191]	4264	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4265	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4266	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4267	cat $config_file >> $jobfile
	4268	echo "%END%" >> $jobfile
	4269	echo " " >> $jobfile
[1]	4270
	4271
[191]	4272	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4273	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4274	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4275	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4276	echo "%END%" >> $jobfile
	4277	if [[ $host = lctit ]]
	4278	then
	4279	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4280	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4281	fi
	4282	echo "chmod u+x $mrun_script_name" >> $jobfile
	4283	echo "execute_mrun=true" >> $jobfile
	4284	echo " " >> $jobfile
[1]	4285
	4286	fi
	4287
[191]	4288
[1]	4289	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4290	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4291	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4292	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4293	if [[ $do_remote = true ]]
	4294	then
	4295	(( i = 0 ))
	4296	while (( i < iin ))
	4297	do
	4298	(( i = i + 1 ))
	4299	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4300	if [[ "${transin[$i]}" = job ]]
	4301	then
	4302	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4303	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4304	echo " " >> $jobfile
	4305	echo "%END%" >> $jobfile
	4306	else
[82]	4307	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4308	fi
	4309
	4310	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4311	echo "if [[ \$? = 1 ]]" >> $jobfile
	4312	echo "then" >> $jobfile
	4313	echo " echo \" \" " >> $jobfile
	4314	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4315	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4316	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4317	echo " execute_mrun=false" >> $jobfile
	4318	echo "fi" >> $jobfile
	4319	done
	4320	fi
	4321
	4322	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4323	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4324	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4325	echo "export LOCAL_PWD" >> $jobfile
	4326
	4327	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4328	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4329	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4330
[66]	4331	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4332	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4333	then
	4334	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4335	fi
[1]	4336
	4337	# MRUN AUF ZIELRECHNER AUFRUFEN
	4338	echo "set -x" >> $jobfile
	4339	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4340
	4341	echo 'ls -al; echo `pwd`' >> $jobfile
	4342	echo "cd \$HOME" >> $jobfile
	4343	echo "rm -rf $TEMPDIR" >> $jobfile
	4344
	4345
	4346
	4347
	4348	# JOB PER SUBJOB STARTEN
	4349	if [[ $silent = false ]]
	4350	then
	4351	printf "\n "
	4352	else
	4353	printf "\n\n"
	4354	fi
	4355
[352]	4356	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4357	rm -rf $jobfile
	4358
	4359
	4360	fi # ENDE REMOTE-TEIL
	4361
	4362
	4363
	4364	# ENDE DER PROZEDUR

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