Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 368

Last change on this file since 368 was 367, checked in by maronga, 15 years ago
adapted for machine lck
Property svn:keywords set to `Id Rev`
File size: 165.6 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 367 2009-08-25 08:35:52Z maronga $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[367]	189	# 25/08/09 - BjornM - adpated for lck
[211]	190
[1]	191
	192	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	193
	194	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	195	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	196	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	197
	198	AddFilenames=""
	199	additional_conditions=""
	200	add_source_path=""
	201	afname=""
	202	archive_save=true
	203	archive_system=none
	204	compiler_name=""
	205	cond1=""
	206	cond2=""
	207	config_file=.mrun.config
[206]	208	coupled_dist=""
	209	coupled_mode="mpi1"
[1]	210	cpp_opts=""
[82]	211	cpp_options=""
[1]	212	cpumax=0
	213	cpurest=0
	214	delete_temporary_catalog=true
	215	do_batch=false
	216	do_compile=true
	217	do_remote=false
	218	do_stagein=true
	219	do_stageout=true
	220	do_trace=false
[352]	221	email_notification="none"
[1]	222	exclude=""
	223	executable=""
	224	execution_error=false
[67]	225	fimm=false
[1]	226	fname=test
	227	fromhost=""
[78]	228	global_revision=""
[122]	229	group_number=none
[1]	230	host=""
	231	host_file=""
	232	hp=""
	233	ignore_archive_error=false
	234	input_list=""
	235	interpreted_config_file=""
[164]	236	job_catalog="~/job_queue"
[1]	237	job_on_file=""
	238	keep_data_from_previous_run=false
[183]	239	link_local_input=false
[149]	240	link_local_output=false
[1]	241	localhost_realname=$(hostname)
	242	local_compile=false
[260]	243	local_dvrserver_running=.FALSE.
[1]	244	locat=normal
	245	mainprog=""
	246	makefile=""
	247	mc=$0
	248	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	249	do
	250	mc=`echo $mc \| cut -f2- -d"/"`
	251	done
	252	module_files=""
	253	mrun_script_name=$mc
[82]	254	netcdf_inc=""
	255	netcdf_lib=""
[1]	256	netcdf_support=false
	257	node_usage=default
	258	numprocs=""
[206]	259	numprocs_atmos=0
	260	numprocs_ocean=0
[1]	261	OOPT=""
	262	openmp=false
	263	output_list=""
	264	package_list=""
	265	punkte="..........................................................."
	266	queue=none
	267	read_from_config=""
[5]	268	restart_run=false
[146]	269	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	270	if [[ $return_addres = 130.75.105.158 ]]
	271	then
	272	return_addres=172.20.25.41
	273	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	274	fi
	275	return_password=""
	276	return_username=$LOGNAME
	277	remotecall=false
	278	remote_username=""
[102]	279	run_coupled_model=false
[1]	280	run_mode=""
	281	scirocco=false
	282	store_on_archive_system=true
	283	striche=" ----------------------------------------------------------------------------"
	284	silent=false
	285	source_list=""
	286	source_path=SOURCE
	287	tasks_per_node=""
	288	threads_per_task=1
	289	tmpcreate=false
	290	tmp_data_catalog=""
	291	transfer_problems=false
	292	usern=$LOGNAME
	293	working_directory=`pwd`
	294	TOPT=""
	295	XOPT=""
	296	zeit=$( date \| cut -c 12-19 )
	297
	298	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	299	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	300
[66]	301	typeset -R30 calltime
[1]	302	typeset -L20 spalte1
	303	typeset -L40 spalte2
	304	typeset -L60 spalte3
	305	typeset -L35 string1=`date`
	306	typeset -L12 string2=$usern
	307	typeset -L12 string3=$localhost_realname
	308	typeset -L12 string4
	309	typeset -L12 string5
[201]	310	typeset -L30 version="MRUN 2.0 Rev$Rev: 367 $"
[1]	311
	312
	313
	314	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	315	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	316
	317	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	318	# EXPORTIERT WERDEN
	319	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	320	export group_number input_list memory numprocs output_list queue run_mode
[1]	321
	322
	323
	324	# FEHLERBEHANDLUNG
	325	# BEI EXIT:
[83]	326	trap 'rm -rf $working_directory/tmp_mrun
[69]	327	if [[ $locat != localhost ]]
[1]	328	then
[22]	329	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	330	# then
	331	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	332	#MRUN-calls on $localhost
	333	#
	334	#date and time user localhost remotehost termination mrun-command
	335	#--------------------------------------------------------------------------------------------------------------------
	336	#%STATEND%
	337	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	338	# fi
	339	#
	340	# # EINTRAG IN DIE STATISTIK-DATEI
	341	# string4=$host
	342	# string5=$locat
	343	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	344	# then
	345	# if [[ $do_batch = true ]]
	346	# then
	347	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	348	# else
	349	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	350	# fi
	351	# fi
[69]	352	echo " " > /dev/null
[1]	353	fi
	354
	355	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	356	then
	357
	358	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	359	(( i = 0 ))
	360	while (( i < iec ))
	361	do
	362	(( i = i + 1 ))
	363	printf "\n *** Execution of ERROR-command:\n"
	364	printf " >>> ${err_command[$i]}\n"
	365	eval ${err_command[$i]}
	366	done
	367	if [[ -n $interpreted_config_file ]] then
	368	rm -rf $interpreted_config_file
	369	fi
[71]	370	if [[ -n .mrun_environment ]] then
	371	rm -rf .mrun_environment
	372	fi
[1]	373	if [[ $tmpcreate = true ]]
	374	then
	375	printf "\n *** Contents of \"$TEMPDIR\":\n"
	376	ls -al; cd
	377	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	378	fi
[260]	379	if [[ "$dvrserver_id" != "" ]]
	380	then
	381	echo "+++ killing dvrserver_id=$dvrserver_id"
	382	kill $dvrserver_id
	383	fi
[1]	384	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	385	then
	386	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	387	fi
	388	printf "\n\n+++ MRUN killed \n\n"
	389	elif [[ $locat != control_c ]]
	390	then
	391	printf "\n\n --> all actions finished\n\n"
	392	printf " Bye, bye $usern !!\n\n"
	393	fi' exit
	394
	395
	396	# BEI TERMINAL-BREAK:
[83]	397	trap 'rm -rf $working_directory/tmp_mrun
[69]	398	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	399	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	400	then
	401	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	402	fi
[260]	403	if [[ "$dvrserver_id" != "" ]]
	404	then
	405	echo "+++ killing dvrserver_id=$dvrserver_id"
	406	kill $dvrserver_id
	407	fi
[1]	408	printf "\n+++ MRUN killed by \"^C\" \n\n"
	409	locat=control_c
	410	exit
	411	' 2
	412
	413
[22]	414	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	415	# BEEN SET
	416	if [[ "$PALM_BIN" = "" ]]
	417	then
	418	printf "\n +++ environment variable PALM_BIN has not been set"
	419	printf "\n please set it to the directory where the PALM scripts are located"
	420	locat=palm_bin; exit
	421	fi
[180]	422	export PATH=$PALM_BIN:$PATH
[22]	423
	424
[1]	425
	426	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	427	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	428	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	429	do
	430	case $option in
	431	(a) afname=$OPTARG;;
	432	(A) store_on_archive_system=false; mc="$mc -A";;
	433	(b) do_batch=true; mc="$mc -b";;
	434	(B) delete_temporary_catalog=false; mc="$mc -B";;
	435	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	436	(C) restart_run=true; mc="$mc -C";;
[1]	437	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	438	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	439	(F) job_on_file="-D"; mc="$mc -F";;
[122]	440	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	441	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	442	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	443	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	444	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	445	(I) ignore_archive_error=true; mc="$mc -I";;
	446	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	447	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	448	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	449	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	450	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	451	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	452	(O) use_openmp=true; mc="$mc -O";;
	453	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	454	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	455	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	456	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	457	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	458	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	459	(S) read_from_config=false; mc="$mc -S";;
	460	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	461	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	462	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	463	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	464	(v) silent=true; mc="$mc -v";;
	465	(x) do_trace=true;set -x; mc="$mc -x";;
	466	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	467	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	468	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	469	(\?) printf "\n +++ unknown option $OPTARG \n"
	470	printf "\n --> type \"$0 ?\" for available options \n"
	471	locat=parameter;exit;;
	472	esac
	473	done
	474
	475
	476	# EVTL. POSITIONSPARAMETER EINLESEN
	477	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	478	shift OPTIND-1
	479
	480
	481	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	482	if [[ "$1" = "?" ]]
	483	then
	484	(printf "\n *** mrun can be called as follows:\n"
[291]	485	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	486	printf "\n Description of available options:\n"
	487	printf "\n Option Description Default-Value"
	488	printf "\n -a base name of input files equiv. -d"
	489	printf "\n -A no archiving when using file-attribute fl"
	490	printf "\n -b batch-job on local machine ---"
	491	printf "\n -B do not delete temporary directory at end ---"
	492	printf "\n -c configuration file .mrun.config"
	493	printf "\n -d base name of files attached to program test"
	494	printf "\n -D preprocessor(cpp)-directives \"\" "
	495	printf "\n -F create remote job file only ---"
	496	printf "\n -h execution host $localhost_realname"
	497	printf "\n -i INPUT control list \"\" "
	498	printf "\n -I archiving errors of previous batch-jobs"
	499	printf "\n will be ignored"
	500	printf "\n -k keep data from previous run"
	501	printf "\n -K additional conditions for controling"
	502	printf "\n usage of conditional code and"
	503	printf "\n env-variables in configuration file \"\" "
	504	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	505	printf "\n -M Makefile name Makefile"
	506	printf "\n -n node usage (shared/not_shared) depending on -h"
	507	printf "\n -o OUTPUT control list \"\" "
	508	printf "\n -O use OpenMP ---"
	509	printf "\n -p software package list \"\" "
	510	printf "\n -q queue \"$queue\" "
	511	printf "\n -r run control list (combines -i -o) \"\" "
	512	printf "\n -s filenames of routines to be compiled \"\" "
	513	printf "\n must end with .f, .f90, .F, or .c !"
	514	printf "\n use \"..\" for more than one file and wildcards"
	515	printf "\n -s TEST compiles all files with w-permit"
	516	printf "\n -S config file interpreted by shellscript ---"
	517	printf "\n -t allowed cpu-time in seconds (batch) 0"
	518	printf "\n -T tasks per node depending on -h"
	519	printf "\n -u username on remote machine \"\" "
	520	printf "\n -v no prompt for confirmation ---"
	521	printf "\n -x tracing of mrun for debug purposes ---"
	522	printf "\n -X # of processors (on parallel machines) 1"
[291]	523	printf "\n -y add appendix \"_O\" to all local output"
	524	printf "\n files (ocean precursor runs followed by"
	525	printf "\n coupled atmosphere-ocean runs) ---"
[206]	526	printf "\n -Y run coupled model, \"#1 #2\" with"
	527	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	528	printf "\n "
	529	printf "\n Possible values of positional parameter <modus>:"
	530	printf "\n \"?\" - this outline \n\n") \| more
	531	exit
	532	elif [[ "$1" != "" ]]
	533	then
	534	printf "\n +++ positional parameter $1 unknown \n"
	535	locat=parameter; exit
	536	fi
	537
	538
	539
	540	# KURZE STARTMELDUNG
	541	printf "\n*** $version "
	542	printf "\n will be executed. Please wait ..."
	543
	544
[82]	545
	546	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	547	if [[ ! -f $config_file ]]
	548	then
	549	printf "\n\n +++ configuration file: "
	550	printf "\n $config_file"
	551	printf "\n does not exist"
	552	locat=connect; exit
	553	fi
	554
	555
	556	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	557	line=""
	558	grep "%host_identifier" $config_file > tmp_mrun
	559	while read line
	560	do
[206]	561	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	562	then
	563	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	564	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	565	if [[ $localhost_realname = $HOSTNAME ]]
[82]	566	then
	567	localhost=$host_identifier
	568	break
	569	fi
	570	fi
	571	done < tmp_mrun
	572
	573	if [[ "$localhost" = "" ]]
	574	then
	575	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	576	printf "\n for local host \"$localhost_realname\"."
	577	printf "\n Please add line"
	578	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	579	printf "\n to the configuration file."
	580	locat=localhost; exit
	581	fi
	582
	583
	584	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	585	case $localhost_realname in
	586	(breg-en0\|berni-en0) archive_system=tivoli;;
	587	(cs*) archive_system=ut;;
	588	(fimm.bccs.uib.no) fimm=true;;
	589	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	590	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	591	(scirocco) scirocco=true;;
	592	esac
	593
	594
	595
[1]	596	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	597	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	598	[[ "$afname" = "" ]] && afname=$fname
	599
	600
	601	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	602	if [[ "$run_mode" != "" ]]
	603	then
	604	input_list="$input_list $run_mode"
	605	output_list="$output_list $run_mode"
	606	fi
	607
	608
	609	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	610	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	611	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	612	# STARTET)
	613	if [[ "$fromhost" = "" ]]
	614	then
	615	fromhost=$localhost
	616	fi
	617
	618
	619	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	620	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	621	then
	622	source_list=TEST
	623	local_compile=true
	624	host=$localhost
	625	fi
	626
	627
	628	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	629	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	630	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	631	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	632	if [[ -n $host && "$host" != $localhost ]]
	633	then
	634	do_batch=true
	635	do_remote=true
	636	case $host in
[367]	637	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
[1]	638	(*) printf "\n"
[83]	639	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	640	printf "\n is not available"
[1]	641	locat=nqs; (( iec = 0 )); exit;;
	642	esac
	643	else
	644	host=$localhost
	645	fi
	646
	647
	648	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	649	if [[ -n $additional_conditions ]]
	650	then
[69]	651	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	652	cond1=`echo $additional_conditions \| cut -d" " -f1`
	653	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	654	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	655	if [[ -n $dummy ]]
	656	then
	657	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	658	locat=options; exit
	659	fi
	660	fi
	661
	662
[206]	663	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	664	if [[ $run_coupled_model = true ]]
	665	then
	666
	667	if [[ -n $coupled_dist ]]
	668	then
	669
	670	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	671	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	672
	673	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	674	then
	675
	676	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	677	printf "\n PEs (total) : $numprocs"
	678	printf "\n PEs (atmosphere): $numprocs_atmos"
	679	printf "\n PEs (ocean) : $numprocs_ocean"
	680	locat=coupling; exit
	681
	682	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	683	# THIS SHOULD BE REMOVED IN FUTURE
	684	elif (( $numprocs_ocean != $numprocs_atmos ))
	685	then
	686
	687	printf "\n +++ currently only 1:1 topologies are supported"
	688	printf "\n PEs (total) : $numprocs"
	689	printf "\n PEs (atmosphere): $numprocs_atmos"
	690	printf "\n PEs (ocean) : $numprocs_ocean"
	691	(( numprocs_atmos = $numprocs / 2 ))
	692	(( numprocs_ocean = $numprocs / 2 ))
	693	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	694
	695	fi
	696
	697	else
	698
	699	(( numprocs_ocean = $numprocs / 2 ))
	700	(( numprocs_atmos = $numprocs / 2 ))
	701
	702	fi
	703	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	704
	705	# GET coupled_mode FROM THE CONFIG FILE
	706	line=""
	707	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	708	while read line
	709	do
	710	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	711	then
	712	coupled_mode="mpi2"
	713	fi
	714	done < tmp_mrun
	715
	716	fi
	717
	718
[1]	719	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	720	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	721	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	722	then
	723	if [[ $ignore_archive_error = false ]]
	724	then
	725	printf "\n +++ data archiving of previous run failed"
	726	printf "\n see directory \~/job_queue on remote machine"
	727	locat=archive; exit
	728	else
	729	printf "\n +++ warning: data archiving in a previous run failed"
	730	printf "\n MRUN continues, trying to get backup copy"
	731	fi
	732	fi
	733
	734
	735
	736	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	737	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	738	if [[ "$read_from_config" = false ]]
	739	then
	740
	741	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	742	while read zeile
	743	do
	744	[[ $silent = false ]] && printf "."
	745
	746
	747	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	748	# ERSETZEN
	749	eval zeile=\"$zeile\"
	750
	751
	752	# INTERPRETATION DER ZEILE
[21]	753	if [[ "$(echo $zeile)" = "" ]]
[1]	754	then
[21]	755	# LEERZEILE, KEINE AKTION
	756	continue
[1]	757
[21]	758	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	759	then
	760
[1]	761	# ZEILE IST KOMMENTARZEILE
	762	true
	763
	764	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	765	then
	766
	767	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	768	zeile=$(echo $zeile \| cut -c2-)
[69]	769	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	770	var=`echo $zeile \| cut -d" " -f1`
	771	value=`echo $zeile \| cut -d" " -s -f2`
	772	for_host=`echo $zeile \| cut -d" " -s -f3`
	773	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	774	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	775
	776	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	777	then
	778
	779	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	780	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	781	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	782
	783
	784	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	785	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	786	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	787	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	788	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	789	# KONFIGURATIONSDATEI
	790	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	791	then
	792	eval $var=\$value
	793
	794	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	795	if [[ $do_trace = true ]]
	796	then
	797	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	798	fi
	799	fi
	800
	801	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	802	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	803	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	804	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	805	if [[ $var = host ]]
	806	then
	807	if [[ -n $host && "$host" != $localhost ]]
	808	then
	809	do_batch=true
	810	do_remote=true
	811	case $host in
[367]	812	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[83]	813	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	814	printf "\n is not available"
[1]	815	locat=nqs; exit;;
	816	esac
	817	else
	818	host=$localhost
	819	fi
	820	fi
	821
	822	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	823	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	824	# DEN PROGRAMMEN BENOETIGT WERDEN
	825	export $var
	826	fi
	827
	828
	829
	830
	831	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	832	then
	833
	834	# ZEILE DEFINIERT ERROR-KOMMANDO
	835	(( iec = iec + 1 ))
	836	zeile=$(echo $zeile \| cut -c4-)
	837	err_command[$iec]="$zeile"
	838
	839	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	840	then
	841
	842	# ZEILE DEFINIERT INPUT-KOMMANDO
	843	(( iic = iic + 1 ))
	844	zeile=$(echo $zeile \| cut -c4-)
	845	in_command[$iic]="$zeile"
	846
	847	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	848	then
	849
	850	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	851	(( ioc = ioc + 1 ))
	852	zeile=$(echo $zeile \| cut -c4-)
	853	out_command[$ioc]="$zeile"
	854
	855	else
	856
	857	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	858	# s2a: in/out - Feld
	859	# s2b: loc - Feld (optional)
	860	# s2c: tr/ar - Feld (optional)
[69]	861	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	862	s1=`echo $zeile \| cut -d" " -f1`
	863	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	864	s2a=$(echo $s2 \| cut -d":" -f1)
	865	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	866	then
	867	s2b=""
	868	s2c=""
	869	else
[69]	870	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	871	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	872	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	873	fi
[69]	874	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	875	s3=`echo $zeile \| cut -d" " -f3`
	876	s4=`echo $zeile \| cut -d" " -s -f4`
	877	s5=`echo $zeile \| cut -d" " -s -f5`
	878	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	879
	880
	881	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	882	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	883	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	884	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	885	# HANDEN SEIN MUSS (D.H. s2b = loc)
	886	IFSALT="$IFS"; IFS="$IFS:"
	887	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	888	then
	889	found=false
	890	for actual in $input_list
	891	do
	892	for formal in $s3
	893	do
	894	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	895	done
	896	done
	897	if [[ $found = true ]]
	898	then
	899	(( iin = iin + 1 ))
	900	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	901	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	902	extin[$iin]=$s6
	903	fi
	904	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	905	then
	906	found=false
	907	for actual in $output_list
	908	do
	909	for formal in $s3
	910	do
	911	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	912	done
	913	done
	914	if [[ $found = true ]]
	915	then
	916	(( iout = iout + 1 ))
	917	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	918	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	919	fi
	920	elif [[ "$s2a" != in && "$s2a" != out ]]
	921	then
	922	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	923	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	924	locat=connect; exit
	925	fi
	926	IFS="$IFSALT"
	927	fi
	928	done < $config_file
	929
	930	else
	931
	932
	933	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	934	[[ $silent = false ]] && printf "..."
	935	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	936	export interpreted_config_file=.icf.$RANDOM
	937
	938
[69]	939
	940	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	941	# VERFUEGUNG STELLEN
	942	cat > .mrun_environment << %%END%%
	943	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	944	config_file = '$config_file', do_remote = '$do_remote',
	945	do_trace = '$do_trace', host = '$host',
	946	input_list = '$input_list', icf = '$interpreted_config_file',
	947	localhost = '$localhost', output_list = '$output_list' /
	948
	949	%%END%%
	950
	951	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	952	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	953	mrun_memory=$memory
[127]	954	mrun_group_number=$group_number
[69]	955	mrun_cpumax=$cpumax
	956	mrun_numprocs=$numprocs
	957
[251]	958	if [[ $localhost_realname = "sx-fep" ]]
[66]	959	then
[251]	960	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	961	else
	962	interpret_config.x
	963	fi
[71]	964	rm .mrun_environment
[1]	965
[71]	966
[1]	967	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	968	chmod u+x $interpreted_config_file
	969	export PATH=$PATH:.
	970	. $interpreted_config_file
[71]	971	rm $interpreted_config_file
[1]	972
[71]	973
[69]	974	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	975	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	976	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	977	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	978	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	979
[1]	980	fi
	981
	982
	983	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	984	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	985	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	986	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	987	if [[ "$SOURCES_COMPLETE" = "" ]]
	988	then
	989
	990	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	991	# VEREINBART WURDE
	992	source_path=""
	993	line=""
	994	grep "%source_path" $config_file > tmp_mrun
	995	while read line
	996	do
	997	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	998	then
	999	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	1000	then
	1001	global_source_path=`echo $line \| cut -d" " -f2`
	1002	fi
	1003	fi
	1004	done < tmp_mrun
	1005
	1006	line=""
	1007	found=false
	1008	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1009	while read line
	1010	do
	1011	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1012	then
	1013	if [[ $found = true ]]
	1014	then
	1015	printf "\n\n +++ more than one source path found in configuration file"
	1016	printf "\n for local host \"$localhost\" "
	1017	locat=source_path; exit
	1018	fi
	1019	source_path=`echo $line \| cut -d" " -f2`
	1020	found=true
	1021	fi
	1022	done < tmp_mrun
	1023	rm tmp_mrun
	1024
	1025	if [[ "$source_path" = "" ]]
	1026	then
	1027	if [[ "$global_source_path" != "" ]]
	1028	then
	1029	source_path=$global_source_path
	1030	else
	1031	printf "\n\n +++ no source path found in configuration file"
	1032	printf "\n for local host \"$localhost\" "
	1033	locat=source_path; exit
	1034	fi
	1035	fi
	1036	eval source_path=$source_path
	1037
	1038	if [[ ! -d $source_path ]]
	1039	then
	1040	printf "\n\n +++ source path \"$source_path\" on local host"
	1041	printf "\n \"$localhost\" does not exist"
	1042	locat=source_path; exit
	1043	fi
	1044
	1045	fi
	1046
	1047
[78]	1048	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1049	# DURCH OPTION -G MITGETEILT)
	1050	if [[ "$global_revision" = "" ]]
	1051	then
	1052	global_revision=`svnversion $source_path 2>/dev/null`
	1053	global_revision="Rev: $global_revision"
	1054	fi
[1]	1055
[78]	1056
[1]	1057	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1058	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1059	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1060	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1061	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1062	if [[ -n $host && "$host" != $localhost ]]
	1063	then
	1064	do_batch=true
	1065	do_remote=true
	1066	case $host in
[367]	1067	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
[1]	1068	(*) printf "\n"
[83]	1069	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1070	printf "\n is not available"
[1]	1071	locat=nqs; (( iec = 0 )); exit;;
	1072	esac
	1073	else
	1074	host=$localhost
	1075	fi
	1076
	1077
	1078	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1079	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1080	then
	1081
	1082	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1083	if [[ ! -n $numprocs ]]
	1084	then
	1085	printf "\n"
	1086	printf "\n +++ option \"-K parallel\" requires additional specification"
	1087	printf "\n of the number of processors to be used by"
	1088	printf "\n mrun-option \"-X\" or by environment-variable"
	1089	printf "\n \"numprocs\" in the configuration file"
	1090	locat=numprocs; (( iec = 0 )); exit
	1091	fi
	1092
	1093	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1094	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1095	# GESAMTPROZESSORANZAHL IST
[251]	1096	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1097	then
	1098	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1099	(( ival = $tasks_per_node ))
	1100	(( pes = numprocs ))
	1101	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1102	# then
	1103	# (( pes = pes - 1 ))
	1104	# fi
	1105	(( ii = pes / ival ))
	1106	if (( pes - ii * ival > 0 ))
	1107	then
	1108	printf "\n"
	1109	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1110	printf "\n divisor of the total number of processors (option \"-X\")"
	1111	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1112	locat=tasks_per_node; (( iec = 0 )); exit
	1113	fi
	1114	fi
	1115
	1116	# IBMY HAT NUR EINEN KNOTEN
	1117	if [[ $host = ibmy ]]
	1118	then
	1119	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1120	then
	1121	printf "\n"
	1122	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1123	printf "\n total number of processors (option \"-X\")"
	1124	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1125	locat=tasks_per_node; (( iec = 0 )); exit
	1126	fi
	1127	fi
	1128
	1129	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1130	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1131	if [[ $use_openmp = true ]]
	1132	then
	1133	threads_per_task=$tasks_per_node
	1134	tasks_per_node=1
	1135	fi
	1136	OOPT="-O $threads_per_task"
	1137	TOPT="-T $tasks_per_node"
	1138
	1139	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1140	if [[ "$tasks_per_node" != "" ]]
	1141	then
	1142	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1143	fi
	1144
	1145	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1146	# SETZEN
	1147	if [[ $node_usage = default ]]
	1148	then
	1149	if [[ $host = ibms ]]
	1150	then
	1151	node_usage=shared
[118]	1152	elif [[ $host = lctit ]]
	1153	then
[265]	1154	node_usage=RAM64GB
[181]	1155	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1156	then
	1157	node_usage=singlejob
[1]	1158	else
	1159	node_usage=not_shared
	1160	fi
	1161	fi
[181]	1162
[265]	1163	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1164	then
	1165	printf "\n"
	1166	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1167	printf "\n \"shared\" or \"not_shared\""
	1168	locat=tasks_per_node; (( iec = 0 )); exit
	1169	fi
	1170
	1171	fi
	1172
	1173	# PRUEFEN, OB HOSTFILE EXISTIERT
	1174	if [[ -n $hostfile ]]
	1175	then
	1176	if [[ ! -f $hostfile ]]
	1177	then
	1178	printf "\n"
	1179	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1180	locat=hostfile; exit
	1181	fi
	1182	fi
	1183
	1184	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1185	if [[ $host = ibmy && $do_remote = false ]]
	1186	then
	1187	if [[ ! -f $HOME/.rhosts ]]
	1188	then
	1189	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1190	printf "\n\n *** file:"
	1191	printf "\n $HOME/.rhosts"
	1192	printf "\n was created\n"
	1193	fi
	1194	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1195	then
	1196	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1197	printf "\n\n *** file:"
	1198	printf "\n $HOME/.rhosts"
	1199	printf "\n was extended by the name of the current host\n"
	1200	fi
	1201	fi
	1202
	1203
	1204
	1205	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1206	if [[ $queue = none ]]
	1207	then
	1208	case $host in
	1209	(ibmb) if [[ $node_usage = shared ]]
	1210	then
	1211	queue=cshare
	1212	else
	1213	queue=csolo
	1214	fi;;
[312]	1215	(ibmh) queue=no_class;;
[1]	1216	(ibmy) queue=parallel;;
[191]	1217	(lcsgib) queue=bigq;;
	1218	(lcsgih) queue=bigq;;
[265]	1219	(lctit) queue=RAM64GB;;
[1]	1220	(nech) queue=none;;
[253]	1221	(necriam) queue=SP;;
[1]	1222	(unics) queue=unics;;
	1223	esac
	1224	fi
	1225
	1226
	1227	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1228	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1229	# ERMITTELN
	1230	(( i = 0 ))
	1231	while (( i < iin ))
	1232	do
	1233	(( i = i + 1 ))
	1234	(( maxcycle = 0 ))
	1235
	1236	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1237	if [[ "${actionin[$i]}" = di ]]
	1238	then
	1239	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1240	# REM-MASCHINE AUSWERTEN
	1241	eval filename=${pathin[$i]}/${endin[$i]}
	1242	else
	1243	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1244	# REM-MASCHINE AUSWERTEN
	1245	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1246	fi
	1247
	1248	# PRUEFEN AUF VORHANDENSEIN
	1249	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1250	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1251	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1252	then
	1253	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1254	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1255	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1256	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1257	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1258	if [[ "${transin[$i]}" != "locopt" ]]
	1259	then
	1260	printf "\n\n +++ INPUT-file: "
	1261	if [[ "${extin[$i]}" = "" ]]
	1262	then
	1263	printf "\n $filename"
	1264	else
	1265	printf "\n $filename.${extin[$i]}"
	1266	fi
	1267	printf "\n does not exist\n"
	1268	locat=input; exit
	1269	else
	1270	transin[$i]="unavailable"
	1271	fi
	1272	else
	1273
	1274	# ZYKLUSNUMMER FESTSTELLEN
	1275	ls -1 -d $filename > filelist 2>/dev/null
	1276	ls -1 -d $filename.* >> filelist 2>/dev/null
	1277	while read zeile
	1278	do
	1279	cycle=$(print $zeile \| cut -f2 -d".")
	1280	if [[ "$cycle" = "$zeile" ]]
	1281	then
	1282	(( icycle = 0 ))
	1283	elif [[ "$cycle" = "${extin[$i]}" ]]
	1284	then
	1285	(( icycle = 0 ))
	1286	else
	1287	(( icycle = $cycle ))
	1288	fi
	1289	if (( icycle > maxcycle ))
	1290	then
	1291	(( maxcycle = icycle ))
	1292	file_to_be_used=$zeile
	1293	fi
	1294	done <filelist
	1295	rm filelist
	1296
	1297	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1298	if (( maxcycle > 0 ))
	1299	then
	1300	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1301	then
	1302	filename=${filename}.$maxcycle.${extin[$i]}
	1303	else
	1304	filename=${filename}.$maxcycle
	1305	fi
	1306	else
	1307	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1308	then
	1309	filename=${filename}.${extin[$i]}
	1310	fi
	1311	fi
	1312
	1313	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1314	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1315	absnamein[$i]=$filename
	1316	if (( maxcycle > 0 ))
	1317	then
	1318	if [[ "${actionin[$i]}" = di ]]
	1319	then
	1320	frelin[$i]=${endin[$i]}.$maxcycle
	1321	else
	1322	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1323	fi
	1324	else
	1325	if [[ "${actionin[$i]}" = di ]]
	1326	then
	1327	frelin[$i]=${endin[$i]}
	1328	else
	1329	frelin[$i]=${afname}${endin[$i]}
	1330	fi
	1331	fi
	1332
	1333	fi
	1334	done
	1335
	1336
	1337	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1338	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1339	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1340	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1341	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1342	(( i = 0 ))
	1343	while (( i < iout ))
	1344	do
	1345	(( i = i + 1 ))
	1346	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1347	then
[260]	1348	if [[ "${actionout[$i]}" = tr ]]
[1]	1349	then
	1350	actionout[$i]=""
[260]	1351	elif [[ "${actionout[$i]}" = trpe ]]
	1352	then
	1353	actionout[$i]=pe
[1]	1354	elif [[ "${actionout[$i]}" = tra ]]
	1355	then
	1356	actionout[$i]=a
	1357	fi
	1358	(( maxcycle = 0 ))
	1359	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1360	eval catalogname=${pathout[$i]}
	1361	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1362	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1363	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1364	then
	1365
	1366	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1367	if cat /dev/null > $filename
	1368	then
	1369	rm $filename
	1370	else
	1371
	1372	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1373	if [[ ! -d $catalogname ]]
	1374	then
	1375	if mkdir -p $catalogname
	1376	then
	1377	printf "\n\n *** directory:"
	1378	printf "\n $catalogname"
	1379	printf "\n was created\n"
	1380	else
	1381	printf "\n\n +++ OUTPUT-file:"
	1382	printf "\n $filename"
	1383	printf "\n cannot be created, because directory does not exist"
	1384	printf "\n and cannot be created either"
	1385	printf "\n"
	1386	locat=output ; exit
	1387	fi 2>/dev/null
	1388	else
	1389	printf "\n\n +++ OUTPUT-file:"
	1390	printf "\n $filename"
	1391	printf "\n cannot be created, although directory exists"
	1392	printf "\n"
	1393	locat=output ; exit
	1394	fi
	1395	fi 2>/dev/null
	1396	else
	1397
	1398	# ZYKLUSNUMMER FESTSTELLEN
	1399	ls -1 -d $filename > filelist 2>/dev/null
	1400	ls -1 -d $filename.* >> filelist 2>/dev/null
	1401	while read zeile
	1402	do
	1403	cycle=$(print $zeile \| cut -f2 -d".")
	1404	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1405	then
	1406	(( icycle = 1 ))
	1407	else
	1408	(( icycle = $cycle + 1 ))
	1409	fi
	1410	if (( icycle > maxcycle ))
	1411	then
	1412	(( maxcycle = icycle ))
	1413	fi
	1414	done <filelist
	1415	rm filelist
	1416	fi
	1417
	1418	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1419	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1420	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1421	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1422	if [[ "${actionout[$i]}" != a ]]
	1423	then
	1424	if (( maxcycle > 0 ))
	1425	then
	1426	filename=${filename}.$maxcycle
	1427	if cat /dev/null > $filename
	1428	then
	1429	rm $filename
	1430	else
	1431	printf "\n +++ OUTPUT-file:"
	1432	printf "\n $filename"
	1433	printf "\n cannot be created"
	1434	locat=output ; exit
	1435	fi
	1436	fi
	1437	else
	1438	(( maxcycle = maxcycle - 1 ))
	1439	if (( maxcycle > 0 ))
	1440	then
	1441	filename=${filename}.$maxcycle
	1442	fi
	1443	fi
	1444
	1445	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1446	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1447	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1448	pathout[$i]=$filename
	1449	if (( maxcycle > 0 ))
	1450	then
	1451	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1452	else
	1453	frelout[$i]=${fname}${endout[$i]}
	1454	fi
	1455
	1456	fi
	1457	done
	1458
	1459
[260]	1460	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1461	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1462	then
[260]	1463	if [[ "$dvr_inc" = "" ]]
[83]	1464	then
[260]	1465	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1466	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1467	locat=dvr; exit
[83]	1468	fi
[260]	1469	if [[ "$dvr_lib" = "" ]]
[83]	1470	then
[260]	1471	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1472	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1473	locat=dvr; exit
[83]	1474	fi
	1475	fi
	1476
	1477
[1]	1478	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1479	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1480	# UEBERSETZT ZU WERDEN)
	1481	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1482	then
	1483	printf "\n +++ neither main program nor executable defined"
	1484	locat=source; exit
	1485	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1486	then
	1487	printf "\n +++ main program as well as executable defined"
	1488	locat=source; exit
	1489	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1490	then
	1491	do_compile=false
	1492	fi
	1493
	1494
[191]	1495	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1496	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1497	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1498	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1499	then
	1500	rm -rf SOURCES_FOR_RUN_$fname
	1501	mkdir SOURCES_FOR_RUN_$fname
	1502	fi
	1503
	1504
[1]	1505	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1506	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1507	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1508	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1509	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1510	then
	1511
[5]	1512	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1513	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1514
	1515
	1516	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1517	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1518	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1519	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1520	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1521	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1522	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1523	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1524	# GESAMMELT
[5]	1525	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1526	then
	1527
	1528	source_list=""
	1529	cd $source_path
	1530
	1531
	1532	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1533	Names=$(ls -1 *.f90 2>&1)
	1534	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1535	Names=$(ls -1 *.F90 2>&1)
	1536	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1537	Names=$(ls -1 *.F 2>&1)
	1538	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1539	Names=$(ls -1 *.f 2>&1)
	1540	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1541	Names=$(ls -1 *.c 2>&1)
	1542	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1543
	1544
	1545	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1546	for dateiname in $Filenames
	1547	do
	1548	if [[ -w $dateiname ]]
	1549	then
	1550	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1551	then
	1552	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1553	source_list=$source_list"$dateiname "
	1554	fi
	1555	fi
	1556	done
	1557
	1558	cd - > /dev/null
	1559
	1560
[5]	1561	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1562	then
	1563
	1564	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1565	source_list=""
	1566	cd $source_path
	1567
	1568
	1569	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1570	if [[ ! -d .svn ]]
	1571	then
	1572	printf "\n\n +++ source directory"
	1573	printf "\n \"$source_path\" "
	1574	printf "\n is not under control of \"subversion\"."
[306]	1575	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1576	fi
	1577
	1578
	1579	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1580	Filenames=""
[69]	1581	svn status > tmp_mrun
	1582	while read line
[5]	1583	do
	1584	firstc=`echo $line \| cut -c1`
	1585	if [[ $firstc = M \|\| $firstc = "?" ]]
	1586	then
	1587	Name=`echo "$line" \| cut -c8-`
	1588	extension=`echo $Name \| cut -d. -f2`
	1589	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1590	then
	1591	Filenames="$Filenames "$Name
	1592	fi
	1593	fi
[69]	1594	done < tmp_mrun
[5]	1595
	1596
	1597	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1598	for dateiname in $Filenames
	1599	do
	1600	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1601	source_list=$source_list"$dateiname "
	1602	done
	1603
	1604	cd - > /dev/null
	1605
	1606
[1]	1607	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1608	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1609	# VORHANDEN
[5]	1610	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1611	then
	1612
	1613	cd $source_path
	1614
	1615	for filename in $source_list
	1616	do
	1617
	1618	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1619	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1620	then
	1621	printf "\n +++ source code file: $filename"
	1622	printf "\n must not contain (\"/\") "
	1623	locat=source; exit
	1624	fi
	1625
	1626	if [[ ! -f $filename ]]
	1627	then
	1628	printf "\n +++ source code file: $filename"
	1629	printf "\n does not exist"
	1630	locat=source; exit
	1631	else
	1632	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1633	fi
	1634
	1635	done
	1636
	1637	cd - > /dev/null
	1638
	1639	fi
	1640
	1641
	1642	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1643	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1644	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1645	if [[ $restart_run != true ]]
[1]	1646	then
	1647
	1648	if [[ ! -f "$source_path/$mainprog" ]]
	1649	then
	1650	printf "\n\n +++ main program: $mainprog"
	1651	printf "\n does not exist in source directory"
	1652	printf "\n \"$source_path\"\n"
	1653	locat=source; exit
	1654	else
	1655	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1656	then
	1657	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1658	source_list=${mainprog}" $source_list"
	1659	fi
	1660	fi
	1661	fi
	1662
	1663
[211]	1664	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1665	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1666	if [[ "$restart_run" != true ]]
	1667	then
	1668	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1669	if [[ ! -f $makefile ]]
	1670	then
	1671	printf "\n +++ file \"$makefile\" does not exist"
	1672	locat=make; exit
	1673	else
	1674	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1675	fi
	1676	fi
	1677
	1678
[1]	1679	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1680	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1681	then
	1682
	1683	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1684	if [[ ! -d $add_source_path ]]
	1685	then
	1686	printf "\n\n +++ WARNING: additional source code directory"
	1687	printf "\n \"$add_source_path\" "
	1688	printf "\n does not exist or is not a directory."
	1689	printf "\n No source code will be used from this directory!\n"
	1690	add_source_path=""
	1691	sleep 3
	1692	else
	1693
	1694	cd $add_source_path
[211]	1695	found=false
[1]	1696
	1697	Names=$(ls -1 *.f90 2>&1)
	1698	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1699	Names=$(ls -1 *.F90 2>&1)
	1700	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1701	Names=$(ls -1 *.F 2>&1)
	1702	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1703	Names=$(ls -1 *.f 2>&1)
	1704	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1705	Names=$(ls -1 *.c 2>&1)
	1706	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1707
	1708	cd - > /dev/null
	1709	cd SOURCES_FOR_RUN_$fname
	1710
[211]	1711	# COPY MAKEFILE IF EXISTING
	1712	if [[ -f $add_source_path/Makefile ]]
	1713	then
	1714	printf "\n\n *** user Makefile from directory"
	1715	printf "\n \"$add_source_path\" is used \n"
	1716	sleep 1
	1717	cp $add_source_path/Makefile .
	1718	fi
	1719
[1]	1720	for dateiname in $AddFilenames
	1721	do
	1722	if [[ -f $dateiname ]]
	1723	then
	1724	printf "\n +++ source code file \"$dateiname\" found in additional"
	1725	printf "\n source code directory \"$add_source_path\" "
[211]	1726	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1727	printf "\n from directory \"$source_path\"."
[1]	1728	locat=source; exit
	1729	fi
	1730
	1731	cp $add_source_path/$dateiname .
	1732	source_list="$source_list $dateiname"
	1733
[211]	1734	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1735	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1736	then
	1737	printf "\n\n +++ user file \"$dateiname\" "
	1738	printf "\n is not listed in Makefile \n"
	1739	locat=source; exit
	1740	else
	1741
[1]	1742	# Default User-Interface von der Liste entfernen, falls Datei
	1743	# ein User-Interface enthaelt
[211]	1744	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1745	# then
	1746	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1747	# then
	1748	# rm -rf user_interface.f90
	1749	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1750	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1751	# printf "\n since a user-interface is found in file"
	1752	# printf "\n \"$add_source_path/$dateiname\" \n"
	1753	# sleep 3
	1754	# else
	1755	if [[ $found = false ]]
[1]	1756	then
[211]	1757	found=true
	1758	printf "\n\n *** following user file(s) added to the"
	1759	printf " files to be translated:\n "
[1]	1760	fi
[211]	1761	printf "$dateiname "
	1762	sleep 0.5
[1]	1763	fi
	1764	done
[211]	1765	[[ $found = true ]] && printf "\n"
[1]	1766	cd - > /dev/null
	1767	fi
	1768	fi
	1769
	1770
	1771	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1772	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1773	if [[ $restart_run != true && -n $package_list ]]
[1]	1774	then
	1775
	1776	cd $source_path
	1777
	1778	for package in $package_list
	1779	do
	1780
	1781	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1782
	1783	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1784	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1785	# LIEFERT
	1786	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1787
	1788
	1789	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1790	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1791	for source_list_name in $package_source_list
	1792	do
	1793	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1794	then
	1795
	1796	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1797	ending=`echo $source_list_name \| cut -f2 -d.`
	1798	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1799	then
	1800	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1801	source_list="$source_list $source_list_name"
	1802	fi
	1803	fi
	1804	done
	1805	done
	1806
	1807	cd - > /dev/null
	1808	fi
	1809
	1810
	1811	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1812	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1813	# if [[ "$restart_run" != true ]]
	1814	# then
	1815	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1816	# if [[ ! -f $makefile ]]
	1817	# then
	1818	# printf "\n +++ file \"$makefile\" does not exist"
	1819	# locat=make; exit
	1820	# else
	1821	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1822	# fi
	1823	# fi
[1]	1824
	1825	fi # do_compile=true
	1826
	1827
	1828	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1829	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1830	if [[ $do_compile = true ]]
	1831	then
	1832
	1833	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1834	# ZUSAMMENSETZEN
[83]	1835	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1836	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1837	then
[82]	1838	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1839	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1840	then
[82]	1841	cpp_options="$cpp_options -D__nec"
	1842	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1843	then
	1844	cpp_options="$cpp_options -D__lc"
[1]	1845	else
[82]	1846	cpp_options="$cpp_options -D__$localhost"
[1]	1847	fi
[83]	1848
	1849	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1850	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1851	then
[82]	1852	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1853	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1854	else
[82]	1855	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1856	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1857	fi
[83]	1858
	1859	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1860	if [[ -n $package_list ]]
	1861	then
	1862	for package in $package_list
	1863	do
	1864	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1865	then
	1866	if [[ $package != "dvrp_graphics+1PE" ]]
	1867	then
[82]	1868	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1869	else
[82]	1870	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1871	export use_seperate_pe_for_dvrp_output=true
	1872	fi
	1873	else
	1874	if [[ $package != "dvrp_graphics+1PE" ]]
	1875	then
[82]	1876	cpp_options="$cpp_options -D__$package"
[1]	1877	else
[82]	1878	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1879	export use_seperate_pe_for_dvrp_output=true
	1880	fi
	1881	fi
	1882	done
	1883	fi
[83]	1884
	1885	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1886	if [[ -n $cpp_opts ]]
	1887	then
	1888	for popts in $cpp_opts
	1889	do
[82]	1890	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1891	then
	1892	cpp_options="${cpp_options},-D__$popts=__$popts"
	1893	else
	1894	cpp_options="$cpp_options -D__$popts"
	1895	fi
[1]	1896	done
	1897	fi
	1898
	1899	else
	1900
	1901
	1902	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1903	if [[ $do_remote = false ]]
	1904	then
	1905	if [[ ! -f $executable ]]
	1906	then
	1907	printf "\n +++ executable file: $executable"
	1908	printf "\n does not exist"
	1909	locat=executable; exit
	1910	fi
	1911	fi
	1912	fi
	1913
	1914
	1915	# JOBMODUS FESTSTELLEN
	1916	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1917	then
	1918	jobmo=BATCH
	1919	else
	1920	jobmo=INTERACTIVE
	1921	fi
	1922
	1923
	1924	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1925	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1926	if [[ "$compiler_name" = "" ]]
	1927	then
[82]	1928
[220]	1929	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1930	locat=compiler_name; exit
	1931
[1]	1932	fi
	1933
	1934
[251]	1935	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1936	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1937
	1938
	1939
	1940	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1941	kennung=$RANDOM
	1942	if [[ "$tmp_user_catalog" = "" ]]
	1943	then
[312]	1944	if [[ $localhost = ibmh ]]
[1]	1945	then
[312]	1946	tmp_user_catalog=$SCRATCH
[1]	1947	elif [[ $localhost = nech ]]
	1948	then
	1949	tmp_user_catalog=$WRKSHR
	1950	else
	1951	tmp_user_catalog=/tmp
	1952	fi
	1953	fi
	1954	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1955
	1956
	1957	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1958	# BESTIMMEN
	1959	if [[ "$tmp_data_catalog" = "" ]]
	1960	then
[312]	1961	if [[ $localhost = ibmb ]]
[1]	1962	then
	1963	tmp_data_catalog=$WORK/mrun_restart_data
	1964	elif [[ $localhost = nech ]]
	1965	then
	1966	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1967	else
	1968	tmp_data_catalog=/tmp/mrun_restart_data
	1969	fi
	1970	fi
	1971
	1972
	1973	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1974	# ERSETZEN
	1975	if [[ $do_remote = false && $do_compile = true ]]
	1976	then
	1977	eval fopts=\"$fopts\"
	1978	eval lopts=\"$lopts\"
	1979	fi
	1980
	1981
	1982
	1983	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1984	fopts="$fopts $netcdf_inc $dvr_inc"
	1985	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1986	ROPTS="$ropts"
[367]	1987	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
[1]	1988	then
	1989	XOPT="-X $numprocs"
	1990	fi
	1991
	1992
	1993
	1994	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1995	# GRAMM BENOETIGT
	1996	done=false
	1997	while [[ $done = false ]]
	1998	do
	1999	cputime=$cpumax
	2000	if (( $cputime == 0 ))
	2001	then
[246]	2002	if [[ $do_batch = true ]]
	2003	then
	2004	printf "\n +++ cpu-time is undefined"
	2005	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2006	printf "\n >>> "
	2007	read cputime 1>/dev/null 2>&1
	2008	else
	2009	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2010	fi
[1]	2011	else
	2012	done=true
	2013	fi
	2014	cpumax=$cputime
	2015	done
	2016
	2017	(( minuten = cputime / 60 ))
	2018	(( sekunden = cputime - minuten * 60 ))
	2019
	2020
	2021	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2022	if [[ $do_batch = true ]]
	2023	then
	2024	done=false
	2025	while [[ $done = false ]]
	2026	do
	2027	if (( memory == 0 ))
	2028	then
	2029	printf "\n +++ memory demand is undefined"
	2030	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2031	printf "\n >>> "
	2032	read memory 1>/dev/null 2>&1
	2033	else
	2034	done=true
	2035	fi
	2036	done
	2037	fi
	2038
	2039
	2040	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2041	if [[ $do_remote = true && -z $remote_username ]]
	2042	then
	2043	while [[ -z $remote_username ]]
	2044	do
	2045	printf "\n +++ username on remote host \"$host\" is undefined"
	2046	printf "\n >>> Please type username:"
	2047	printf "\n >>> "
	2048	read remote_username
	2049	done
	2050	mc="$mc -u$remote_username"
	2051	fi
	2052
[221]	2053
	2054	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2055	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2056	then
	2057	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2058	fi
	2059
	2060
	2061
[1]	2062	###########################################################################
	2063	# HEADER-AUSGABE
	2064	###########################################################################
	2065
	2066
	2067	calltime=$(date)
	2068	printf "\n"
	2069	# [[ $silent = false ]] && clear
	2070	printf "#--------------------------------------------------------------# \n"
	2071	printf "\| $version$calltime \| \n"
	2072	printf "\| \| \n"
	2073	spalte1="called on:"; spalte2=$localhost_realname
	2074	printf "\| $spalte1$spalte2 \| \n"
	2075	if [[ $local_compile = false ]]
	2076	then
	2077	if [[ $do_remote = true ]]
	2078	then
	2079	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2080	else
	2081	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2082	fi
	2083	else
	2084	spalte1="compiling test only!"; spalte2=""
	2085	fi
	2086	printf "\| $spalte1$spalte2 \| \n"
	2087	if [[ -n $numprocs ]]
	2088	then
	2089	spalte1="number of PEs:"; spalte2=$numprocs
	2090	printf "\| $spalte1$spalte2 \| \n"
	2091	fi
	2092	if [[ -n $tasks_per_node ]]
	2093	then
	2094	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2095	printf "\| $spalte1$spalte2 \| \n"
	2096	fi
	2097	if [[ $threads_per_task != 1 ]]
	2098	then
	2099	spalte1="threads per task:"; spalte2="$threads_per_task"
	2100	printf "\| $spalte1$spalte2 \| \n"
	2101	fi
	2102	printf "\| \| \n"
	2103	if [[ $do_compile = true ]]
	2104	then
[82]	2105	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2106	printf "\| $spalte1$spalte2 \| \n"
[82]	2107	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2108	while [[ "$zeile" != "" ]]
	2109	do
	2110	spalte1=""
	2111	spalte2=$zeile
	2112	printf "\| $spalte1$spalte2 \| \n"
	2113	zeile=$(echo "$zeile" \| cut -c41-)
	2114	done
	2115
[82]	2116	spalte1=compiler-options:; spalte2="$fopts"
[1]	2117	printf "\| $spalte1$spalte2 \| \n"
[82]	2118	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2119	while [[ "$zeile" != "" ]]
	2120	do
	2121	spalte1=""
	2122	spalte2=$zeile
	2123	printf "\| $spalte1$spalte2 \| \n"
	2124	zeile=$(echo "$zeile" \| cut -c41-)
	2125	done
	2126
[82]	2127	spalte1=linker-options:; spalte2=$lopts
[1]	2128	printf "\| $spalte1$spalte2 \| \n"
[82]	2129	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2130	while [[ "$zeile" != "" ]]
	2131	do
	2132	spalte1=""
	2133	spalte2=$zeile
	2134	printf "\| $spalte1$spalte2 \| \n"
	2135	zeile=$(echo "$zeile" \| cut -c41-)
	2136	done
	2137
	2138	spalte1="main program":; spalte2=$mainprog
	2139	printf "\| $spalte1$spalte2 \| \n"
	2140	else
	2141	spalte1=executable:; spalte2=$executable
	2142	printf "\| $spalte1$spalte2 \| \n"
	2143	fi
	2144	printf "\| \| \n"
	2145	spalte1="base name of files":; spalte2=$fname
	2146	printf "\| $spalte1$spalte2 \| \n"
	2147	if [[ $fname != $afname ]]
	2148	then
	2149	spalte1="base name of input files":; spalte2=$afname
	2150	printf "\| $spalte1$spalte2 \| \n"
	2151	fi
	2152	spalte1="INPUT control list":; spalte2=$input_list
	2153	printf "\| $spalte1$spalte2 \| \n"
	2154	spalte1="OUTPUT control list":; spalte2=$output_list
	2155	printf "\| $spalte1$spalte2 \| \n"
	2156
	2157	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2158	then
	2159	spalte1="memory demand / PE":; spalte2="$memory MB"
	2160	printf "\| $spalte1$spalte2 \| \n"
	2161	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2162	printf "\| $spalte1$spalte2 \| \n"
	2163	fi
	2164
	2165	if [[ $do_compile = true ]]
	2166	then
	2167	printf "\| \| \n"
	2168	printf "\| Files to be compiled: \| \n"
	2169	zeile=$source_list
	2170	while [[ "$zeile" != "" ]]
	2171	do
	2172	spalte3=$zeile
	2173	printf "\| $spalte3 \| \n"
	2174	zeile=$(echo "$zeile" \| cut -c61-)
	2175	done
	2176	fi
	2177	printf "#--------------------------------------------------------------#"
	2178
	2179
	2180
	2181	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2182	if [[ $do_trace = true ]]
	2183	then
	2184	(( i = 0 ))
	2185	while (( i < iin ))
	2186	do
	2187	(( i = i + 1 ))
	2188	if (( i == 1 ))
	2189	then
	2190	printf "\n\n >>> INPUT-file assignments:\n"
	2191	fi
	2192	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2193	done
	2194	(( i = 0 ))
	2195	while (( i < iout ))
	2196	do
	2197	(( i = i + 1 ))
	2198	if (( i == 1 ))
	2199	then
	2200	printf "\n\n >>> OUTPUT-file assignments:\n"
	2201	fi
	2202	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2203	done
	2204	(( i = 0 ))
	2205	while (( i < iic ))
	2206	do
	2207	(( i = i + 1 ))
	2208	if (( i == 1 ))
	2209	then
	2210	printf "\n\n >>> INPUT-commands:\n"
	2211	fi
	2212	printf "\n ${in_command[$i]}"
	2213	done
	2214	(( i = 0 ))
	2215	while (( i < ioc ))
	2216	do
	2217	(( i = i + 1 ))
	2218	if (( i == 1 ))
	2219	then
	2220	printf "\n\n >>> OUTPUT-commands:\n"
	2221	fi
	2222	printf "\n ${out_command[$i]}"
	2223	done
	2224	fi
	2225
	2226
	2227	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2228	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2229	then
	2230	antwort=dummy
	2231	printf "\n\n"
	2232	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2233	do
	2234	printf " >>> everything o.k. (y/n) ? "
	2235	read antwort
	2236	done
	2237	if [[ $antwort = n \|\| $antwort = N ]]
	2238	then
	2239	locat=user_abort; (( iec = 0 )); exit
	2240	fi
	2241	if [[ $do_batch = true ]]
	2242	then
	2243	printf " >>> batch-job will be created and submitted"
	2244	else
	2245	if [[ $local_compile = false ]]
	2246	then
	2247	printf " >>> MRUN will now continue to execute on this machine"
	2248	else
	2249	printf " >>> a test compilation will now be carried out on this machine"
	2250	fi
	2251	fi
	2252	fi
	2253
	2254
	2255
	2256
	2257	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2258	# CHENDE AKTIONEN DURCHGEFUEHRT
	2259	if [[ $do_batch = false ]]
	2260	then
	2261
	2262
	2263	# TEMPORAEREN KATALOG ERZEUGEN
	2264	mkdir -p $TEMPDIR
	2265	chmod go+rx $TEMPDIR
	2266	tmpcreate=true
	2267
	2268
	2269	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2270	# TEMPORAERES VERZEICHNIS KOPIEREN
	2271	if [[ $do_compile = true ]]
	2272	then
	2273
	2274	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2275	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2276	if [[ $localhost = nech ]]
	2277	then
	2278	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2279	if mkdir -p $TEMPDIR_COMPILE
	2280	then
	2281	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2282	printf "\n is generated as temporary directory for cross compiling\n"
	2283	else
	2284	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2285	printf "\n needed for cross compilation failed"
	2286	locat=compile
	2287	exit
	2288	fi
	2289	else
	2290	TEMPDIR_COMPILE=$TEMPDIR
	2291	fi
	2292
	2293
[82]	2294	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2295	line=""
	2296	grep "%depository_path" $config_file > tmp_mrun
	2297	while read line
	2298	do
	2299	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2300	then
	2301	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2302	then
[82]	2303	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2304	fi
[82]	2305	fi
	2306	done < tmp_mrun
[1]	2307
[82]	2308	line=""
	2309	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2310	while read line
	2311	do
	2312	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2313	then
[211]	2314	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2315	then
	2316	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2317	fi
[1]	2318	fi
[82]	2319	done < tmp_mrun
[1]	2320
[82]	2321	if [[ "$local_depository_path" = "" ]]
	2322	then
	2323	if [[ "$global_depository_path" != "" ]]
[1]	2324	then
[82]	2325	local_depository_path=$global_depository_path
[1]	2326	else
[82]	2327	printf "\n\n +++ no depository path found in configuration file"
	2328	printf "\n for local host \"$localhost\" "
	2329	printf "\n please set \"\%depository_path\" in configuration file\n"
	2330	locat=config_file; exit
[1]	2331	fi
[82]	2332	fi
	2333	eval local_depository_path=$local_depository_path
[215]	2334	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2335	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2336
[215]	2337
[82]	2338	basename=`print $mainprog \| cut -f1 -d"."`
	2339	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2340	if [[ ! -f $make_depository ]]
	2341	then
	2342	printf "\n"
	2343	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2344	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2345	else
	2346	cp $make_depository $TEMPDIR_COMPILE
[1]	2347	cd $TEMPDIR_COMPILE
[82]	2348	tar -xf $make_depository > /dev/null 2>&1
[1]	2349	cd - > /dev/null
	2350	fi
[82]	2351
	2352	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2353
	2354	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2355	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2356	# MAKEFILE EINTRAGEN
[211]	2357	# cd $TEMPDIR_COMPILE
	2358	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2359	# if [[ "$interface_file" != "" ]]
	2360	# then
	2361	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2362	# mv Makefile Makefile_old
	2363	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2364	# fi
	2365	# cd - > /dev/null
[1]	2366	else
	2367	cp $executable ${TEMPDIR}/a.out
	2368	fi
	2369
	2370
	2371	# WECHSEL IN TEMPORAEREN KATALOG
	2372	cd $TEMPDIR
	2373	printf "\n *** changed to temporary directory: $TEMPDIR"
	2374
	2375
	2376	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2377	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2378	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2379	# ERMITTELN
	2380	(( i = 0 ))
	2381	while (( i < iout ))
	2382	do
	2383	(( i = i + 1 ))
	2384	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2385	then
	2386	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2387	else
	2388	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2389	fi
	2390	done
	2391
	2392
	2393	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2394	if [[ $do_compile = true ]]
	2395	then
	2396
	2397
	2398	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2399	printf "\n\n\n *** compilation starts \n$striche\n"
	2400	printf " *** compilation with make using following options:\n"
[211]	2401	printf " make depository: $make_depository"
[82]	2402	printf " compilername: $compiler_name\n"
	2403	printf " options: $fopts\n"
	2404	printf " preprocessor-directives: $cpp_options \n"
	2405	printf " linker-options: $lopts \n"
	2406	printf " source code files: $source_list \n"
	2407
	2408	if [[ $localhost = nech ]]
[1]	2409	then
[82]	2410	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2411	cp $TEMPDIR_COMPILE/a.out .
	2412	[[ $? != 0 ]] && compile_error=true
	2413	rm -rf $TEMPDIR_COMPILE
[312]	2414	elif [[ $localhost = ibmh ]]
	2415	then
[325]	2416	printf " compiler is called via ssh on \"plogin1\" \n"
	2417	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2418	[[ ! -f a.out ]] && compile_error=true
	2419	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2420	elif [[ $localhost = lcsgib ]]
	2421	then
[221]	2422	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[291]	2423	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2424	[[ ! -f a.out ]] && compile_error=true
	2425	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2426	elif [[ $localhost = lcsgih ]]
	2427	then
[221]	2428	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
[366]	2429	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2430	[[ ! -f a.out ]] && compile_error=true
	2431	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2432	else
[118]	2433	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2434	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2435	fi
[1]	2436
	2437	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2438	then
	2439	printf "\n +++ error occured while compiling or linking"
	2440	locat=compile
[181]	2441
[182]	2442	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2443	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2444	# then
[181]	2445	exit
[197]	2446	# else
	2447	# locat=normal
	2448	# fi
[1]	2449	else
	2450	printf "$striche\n *** compilation finished \n"
	2451	fi
	2452	fi
	2453
	2454
	2455	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2456	if [[ $local_compile = true ]]
	2457	then
	2458	cd $HOME
	2459	rm -rf $TEMPDIR
	2460	locat=local_compile; exit
	2461	fi
	2462
	2463
	2464	# BEREITSTELLEN DER INPUT-DATEIEN
	2465	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2466	(( i = 0 ))
	2467	while (( i < iin ))
	2468	do
	2469	(( i = i + 1 ))
	2470	if (( i == 1 ))
	2471	then
	2472	printf "\n\n *** providing INPUT-files:\n$striche"
	2473	fi
	2474
	2475
	2476	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2477	if [[ "${transin[$i]}" = unavailable ]]
	2478	then
	2479	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2480	then
	2481	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2482	printf "\n is not available!"
	2483	else
	2484	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2485	printf "\n is not available!"
	2486	fi
	2487	continue
	2488	fi
	2489
	2490	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2491	files_for_pes=false; datentyp=file
	2492	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2493	then
	2494	files_for_pes=true; datentyp=directory
	2495	actionin[$i]=""
	2496	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2497	then
	2498	actionin[$i]=""
	2499	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2500	then
	2501	files_for_pes=true; datentyp=directory
	2502	actionin[$i]="ar"
	2503	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2504	then
	2505	actionin[$i]="ar"
	2506	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2507	then
	2508	files_for_pes=true; datentyp=directory
	2509	actionin[$i]="fl"
	2510	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2511	then
	2512	actionin[$i]="fl"
	2513	fi
	2514
	2515	if [[ $files_for_pes = true ]]
	2516	then
	2517	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2518	else
	2519	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2520	fi
	2521
	2522	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2523	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2524	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2525	# SERVER ZU HOLEN
	2526	if [[ "${actionin[$i]}" = fl ]]
	2527	then
	2528	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2529	if [[ $files_for_pes = false ]]
	2530	then
	2531	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2532	then
	2533	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2534	got_tmp[$i]=true
	2535	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2536	then
	2537	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2538	printf "\n *** trying to use backup copy in \"$WORK\" "
	2539	cp $WORK/${frelin[$i]} ${localin[$i]}
	2540	else
	2541	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2542	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2543	printf "\n *** trying to get copy from archive"
	2544	actionin[$i]=ar
	2545	fi
	2546	else
	2547	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2548	then
	2549	mkdir ${localin[$i]}
[149]	2550	cd $tmp_data_catalog/${frelin[$i]}
	2551	for file in $(ls *)
	2552	do
	2553	ln $file $TEMPDIR/${localin[$i]}
	2554	done
	2555	cd $TEMPDIR
[1]	2556	got_tmp[$i]=true
	2557	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2558	then
	2559	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2560	printf "\n *** trying to use backup copy in \"$WORK\" "
	2561	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2562	else
	2563	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2564	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2565	printf "\n *** trying to get copy from archive"
	2566	actionin[$i]=ar
	2567	fi
	2568	fi
	2569	fi
	2570
	2571
	2572	# DATEI LIEGT AUF ARCHIV-SERVER
	2573	if [[ "${actionin[$i]}" = ar ]]
	2574	then
	2575
	2576	if [[ $files_for_pes = false ]]
	2577	then
	2578	printf "\n file will be restored from archive-system ($archive_system)!"
	2579	else
	2580	printf "\n directory will be restored from archive-system ($archive_system)!"
	2581	fi
	2582
	2583	file_restored=false
	2584
	2585	if [[ $archive_system = asterix ]]
	2586	then
	2587	do_stagein=true
	2588	(( stagein_anz = 0 ))
	2589	while [[ $do_stagein = true ]]
	2590	do
	2591	if [[ $files_for_pes = false ]]
	2592	then
	2593	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2594	else
	2595	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2596	fi
	2597	cat STAGEIN_OUTPUT
	2598	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2599	then
	2600	file_restored=true
	2601	do_stagein=false
	2602	else
	2603	(( stagein_anz = stagein_anz + 1 ))
	2604	if (( stagein_anz == 10 ))
	2605	then
	2606	printf "\n +++ stagein stoped after 10 tries"
	2607	locat=stage
	2608	exit
	2609	fi
	2610	printf "\n +++ restoring from archive failed, trying again:"
	2611	sleep 900
	2612	fi
	2613	done
	2614	elif [[ $archive_system = DMF ]]
	2615	then
	2616	if [[ $files_for_pes = false ]]
	2617	then
	2618	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2619	locat=DMF
	2620	exit
	2621	else
	2622	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2623	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2624	file_restored=true
	2625	fi
	2626	elif [[ $archive_system = tivoli ]]
	2627	then
	2628	if [[ $files_for_pes = false ]]
	2629	then
	2630	if [[ $localhost = ibmh ]]
	2631	then
	2632	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2633	else
	2634	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2635	fi
	2636	else
	2637	(( inode = 0 ))
	2638	while (( inode < nodes ))
	2639	do
	2640	if [[ $localhost = ibmh ]]
	2641	then
	2642	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2643	else
	2644	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2645	fi
	2646	(( inode = inode + 1 ))
	2647	done
	2648	fi
	2649	file_restored=true
	2650	elif [[ $archive_system = ut ]]
	2651	then
	2652	if [[ $files_for_pes = false ]]
	2653	then
	2654	cp $UT/${frelin[$i]} .
	2655	else
	2656	(( inode = 0 ))
	2657	while (( inode < nodes ))
	2658	do
	2659	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2660	(( inode = inode + 1 ))
	2661	done
	2662	fi
	2663	file_restored=true
	2664	else
	2665	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2666	locat=rearchive
	2667	exit
	2668	fi
	2669
	2670	if [[ $file_restored = true ]]
	2671	then
	2672
	2673	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2674	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2675	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2676	if [[ $files_for_pes = false ]]
	2677	then
	2678	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2679	else
	2680	mkdir $tmp_data_catalog/${frelin[$i]}
	2681	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2682	fi
	2683	got_tmp[$i]=true
	2684
	2685	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2686	mv ${frelin[$i]} ${localin[$i]}
	2687
	2688	fi
	2689	fi
	2690
	2691
	2692	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2693	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2694	then
	2695
	2696	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2697	then
	2698
	2699	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2700	printf "\n file will be provided for $numprocs processors"
	2701	mkdir ${localin[$i]}
	2702	ival=$numprocs
	2703	(( ii = 0 ))
	2704	while (( ii <= ival-1 ))
	2705	do
	2706	if (( ii < 10 ))
	2707	then
	2708	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2709	elif (( ii < 100 ))
	2710	then
	2711	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2712	elif (( ii < 1000 ))
	2713	then
	2714	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2715	else
	2716	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2717	fi
	2718	(( ii = ii + 1 ))
	2719	done
	2720
	2721	else
	2722
	2723	if [[ $files_for_pes = true ]]
	2724	then
	2725
	2726	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2727	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2728	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2729	# PER MOVE UMBENANNT WERDEN
	2730	printf "\n providing $numprocs files for the respective processors"
	2731	mkdir ${localin[$i]}
[183]	2732	if [[ $link_local_input = true ]]
	2733	then
	2734	printf " using ln -f\n"
	2735	cd ${absnamein[$i]}
	2736	for file in $(ls *)
	2737	do
	2738	ln -f $file ${localin[$i]}
	2739	done
	2740	cd $TEMPDIR
	2741	fi
	2742	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2743	if [[ ! -f "${localin[$i]}/_0000" ]]
	2744	then
	2745	if [[ $link_local_input = true ]]
	2746	then
	2747	printf " ln failed for .../_0000, using cp...\n"
	2748	fi
	2749	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2750	fi
[1]	2751
	2752	else
	2753	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2754	if [[ $link_local_input = true ]]
	2755	then
	2756	printf " using ln -f\n"
	2757	ln -f ${absnamein[$i]} ${localin[$i]}
	2758	fi
	2759	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2760	if [[ ! -f "${localin[$i]}" ]]
	2761	then
	2762	if [[ $link_local_input = true ]]
	2763	then
	2764	printf " ln failed, using cp...\n"
	2765	fi
	2766	cp ${absnamein[$i]} ${localin[$i]}
	2767	fi
[1]	2768	fi
	2769	fi
	2770	fi
	2771
	2772	done
	2773	if (( i != 0 ))
	2774	then
	2775	printf "\n$striche\n *** all INPUT-files provided \n"
	2776	fi
	2777
	2778
	2779	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2780	(( i = 0 ))
	2781	while (( i < iic ))
	2782	do
	2783	(( i = i + 1 ))
	2784	if (( i == 1 ))
	2785	then
	2786	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2787	fi
	2788	printf "\n >>> ${in_command[$i]}"
	2789	eval ${in_command[$i]}
	2790	if (( i == iic ))
	2791	then
	2792	printf "\n$striche\n"
	2793	fi
	2794	done
	2795
	2796
	2797	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2798	cpurest=${cpumax}.
	2799
	2800
[260]	2801	# START DVR STREAMING SERVER
	2802	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2803	then
	2804	if [[ "$dvr_server" != "" ]]
	2805	then
	2806
	2807	printf "\n\n *** preparing the dvr streaming server configuration file"
	2808
	2809	# Check, if a dvr server is already running
	2810	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2811	if [[ "$running_dvrserver_id" != "" ]]
	2812	then
	2813
[261]	2814	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2815	printf "\n This server is used instead starting a new one!"
[261]	2816	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2817
	2818	else
	2819
	2820	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2821	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2822	then
	2823	cp ${PALM_BIN}/.dvrserver.config .
	2824
	2825	# Entering the BASEDIR, UID and GID into this file
	2826	user_id=`id -u`
	2827	group_id=`id -g`
	2828	# & is needed as seperator, because TEMPDIR contains /
	2829	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2830	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2831	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2832	mv .dvrserver.3 .dvrserver.config
	2833	rm .dvrserver.1 .dvrserver.2
	2834
	2835	# Start dvr server in background, get his id and print on terminal
	2836	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2837	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2838	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2839	local_dvrserver_running=.TRUE.
	2840	else
	2841	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2842	printf "\n \"$PALM_BIN\" "
	2843	locat=dvr
	2844	exit
	2845	fi
	2846
	2847	fi
	2848
	2849	else
	2850	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2851	fi
	2852	fi
	2853
	2854
	2855	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2856	# LESEN VON PALM)
	2857	cat > ENVPAR << %%END%%
	2858	&envpar run_identifier = '$fname', host = '$localhost',
	2859	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2860	maximum_cpu_time_allowed = ${cpumax}.,
	2861	revision = '$global_revision',
	2862	local_dvrserver_running = $local_dvrserver_running /
	2863
	2864	%%END%%
	2865
	2866
[1]	2867	# PROGRAMMSTART
	2868	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2869	PATH=$PATH:$TEMPDIR
	2870
[359]	2871	# MPI debug option (argument checking, slows down execution due to increased latency)
	2872	if [[ "$mpi_debug" = true ]]
	2873	then
	2874	export MPI_CHECK_ARGS=1
	2875	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2876	fi
	2877
[1]	2878	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2879	then
	2880	if [[ "$ENVIRONMENT" = BATCH ]]
	2881	then
[211]	2882	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2883	then
	2884	printf "\n +++ debug is allowed in interactive mode only"
	2885	locat=debug
	2886	exit
	2887	fi
[1]	2888	fi
[5]	2889	if [[ $localhost = decalpha ]]
[1]	2890	then
	2891	dxladebug a.out
	2892	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2893	then
	2894
	2895	# SETUP THE IBM MPI ENVIRONMENT
	2896	export MP_SHARED_MEMORY=yes
	2897	export AIXTHREADS_SCOPE=S
	2898	export OMP_NUM_THREADS=$threads_per_task
	2899	export AUTHSTATE=files
	2900	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2901
	2902	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2903	export MP_ADAPTER_USE=shared
	2904	export MP_CPU_USE=multiple
	2905	export MP_TIMEOUT=1200
	2906
	2907	unset MP_TASK_AFFINITY
	2908
	2909	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2910	#(( ii = 1 ))
	2911	#while (( ii <= $numprocs ))
	2912	#do
	2913	# echo $localhost_realname >> hostfile
	2914	# (( ii = ii + 1 ))
	2915	#done
	2916	#export MP_HOSTFILE=hostfile
	2917
	2918	if [[ "$LOADLBATCH" = yes ]]
	2919	then
	2920	totalview poe a.out $ROPTS
	2921	else
	2922	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2923	export TVDSVRLAUNCHCMD=ssh
	2924	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2925	fi
[211]	2926	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2927	then
	2928	# CURRENTLY NO DEBUGGER ON LCSGI
	2929	if [[ $run_coupled_model = true ]]
	2930	then
	2931	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2932	locat=debug
	2933	exit
[223]	2934	else
	2935	echo "no_coupling" > runfile_atmos
[211]	2936	fi
	2937	(( ii = $numprocs / $threads_per_task ))
	2938	export OMP_NUM_THREADS=$threads_per_task
	2939	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2940	if [[ $threads_per_task != 1 ]]
	2941	then
	2942	printf "\n threads per task: $threads_per_task"
	2943	fi
	2944	printf "\n\n"
[223]	2945	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2946	then
	2947	# export MPI_LAUNCH_TIMEOUT=360
	2948	if [[ "$totalview" = true ]]
	2949	then
	2950	printf "\n running totalview debugger"
	2951	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2952	else
	2953	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2954	fi
	2955	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2956	then
	2957	# ulimit -s 300000 # A too large stack size causes problems
	2958	# export MV2_NUM_PORTS=2
	2959	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2960	if [[ "$totalview" = true ]]
	2961	then
	2962	printf "\n running totalview debugger"
	2963	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2964	else
	2965	mpiexec ./a.out $ROPTS < runfile_atmos
	2966	fi
[223]	2967	fi
[1]	2968	else
	2969	printf "\n +++ no debug available on \"$localhost\" "
	2970	printf "\n or not implemented in mrun so far"
	2971	locat=debug
	2972	exit
	2973	fi
	2974	else
	2975	if [[ -n $numprocs ]]
	2976	then
	2977	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2978	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2979	then
	2980	# SETUP THE IBM MPI ENVIRONMENT
[312]	2981	if [[ $host != ibmh ]]
	2982	then
	2983	export MP_SHARED_MEMORY=yes
	2984	export AIXTHREAD_SCOPE=S
	2985	export OMP_NUM_THREADS=$threads_per_task
	2986	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2987	export AUTHSTATE=files
	2988	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2989	# export MP_PRINTENV=yes
[1]	2990
[312]	2991	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2992	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2993	export MP_WAIT_MODE=poll
	2994	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2995	fi
[1]	2996	if [[ "$LOADLBATCH" = yes ]]
	2997	then
	2998	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2999	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	3000	then
[102]	3001	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3002	else
[343]	3003	if [[ $run_coupled_model = false ]]
	3004	then
	3005	if [[ "$ocean_file_appendix" = true ]]
	3006	then
	3007	echo "precursor_ocean" > runfile_atmos
	3008	else
	3009	echo "precursor_atmos" > runfile_atmos
	3010	fi
	3011	else
	3012	(( iia = $numprocs_atmos / $threads_per_task ))
	3013	(( iio = $numprocs_ocean / $threads_per_task ))
	3014	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3015	printf "\n using $coupled_mode coupling"
	3016	printf "\n\n"
	3017	echo "coupled_run $iia $iio" > runfile_atmos
	3018	fi
	3019	poe ./a.out $ROPTS < runfile_atmos
[1]	3020	fi
	3021	else
	3022	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3023	then
[102]	3024	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3025	elif [[ $localhost = ibmy ]]
	3026	then
	3027	if [[ -f $hostfile ]]
	3028	then
	3029	cp $hostfile hostfile
	3030	else
	3031	(( ii = 1 ))
	3032	while (( ii <= $numprocs ))
	3033	do
	3034	echo $localhost_realname >> hostfile
	3035	(( ii = ii + 1 ))
	3036	done
	3037	fi
	3038	export MP_HOSTFILE=hostfile
[331]	3039	if [[ $run_coupled_model = false ]]
	3040	then
	3041	if [[ "$ocean_file_appendix" = true ]]
	3042	then
	3043	echo "precursor_ocean" > runfile_atmos
	3044	else
	3045	echo "precursor_atmos" > runfile_atmos
	3046	fi
	3047	else
	3048	(( iia = $numprocs_atmos / $threads_per_task ))
	3049	(( iio = $numprocs_ocean / $threads_per_task ))
	3050	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3051	printf "\n using $coupled_mode coupling"
	3052	printf "\n\n"
	3053	echo "coupled_run $iia $iio" > runfile_atmos
	3054	fi
	3055	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3056
[1]	3057	else
	3058	if [[ "$host_file" = "" ]]
	3059	then
	3060	printf "\n +++ no hostfile given in configuration file"
	3061	locat=config_file
	3062	exit
	3063	else
	3064	eval host_file=$host_file
	3065	fi
	3066	export MP_HOSTFILE=$host_file
[102]	3067	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3068	fi
	3069	fi
[251]	3070	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3071	then
	3072	(( ii = nodes ))
	3073	if [[ $ii = 1 ]]
	3074	then
	3075	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3076	export MPIPROGINF=YES
[61]	3077	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3078	echo "*** execution on single node with mpirun"
[102]	3079	mpirun -np $numprocs ./a.out $ROPTS
[1]	3080	else
	3081	(( i = 0 ))
	3082	while (( i < ii ))
	3083	do
	3084	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3085	(( i = i + 1 ))
	3086	done
	3087
	3088	echo "#!/bin/sh" > mpi_exec_shell
	3089	echo " " >> mpi_exec_shell
	3090	echo "set -u" >> mpi_exec_shell
	3091	echo "F_ERRCNT=0" >> mpi_exec_shell
	3092	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3093	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3094	echo "cpurest=$cpurest" >> mpi_exec_shell
	3095	echo "fname=$fname" >> mpi_exec_shell
	3096	echo "localhost=$localhost" >> mpi_exec_shell
	3097	echo "return_addres=$return_addres" >> mpi_exec_shell
	3098	echo "return_username=$return_username" >> mpi_exec_shell
	3099	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3100	echo "write_binary=$write_binary" >> mpi_exec_shell
	3101	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3102	echo " " >> mpi_exec_shell
	3103	echo "export F_ERRCNT" >> mpi_exec_shell
	3104	echo "export MPIPROGINV" >> mpi_exec_shell
	3105	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3106	echo "export cpurest" >> mpi_exec_shell
	3107	echo "export fname" >> mpi_exec_shell
	3108	echo "export localhost" >> mpi_exec_shell
	3109	echo "export return_addres" >> mpi_exec_shell
	3110	echo "export return_username" >> mpi_exec_shell
	3111	echo "export tasks_per_node" >> mpi_exec_shell
	3112	echo "export write_binary" >> mpi_exec_shell
	3113	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3114	echo " " >> mpi_exec_shell
[102]	3115	echo "exec ./a.out" >> mpi_exec_shell
[1]	3116
	3117	chmod u+x mpi_exec_shell
	3118	export MPIPROGINF=YES
	3119	mpirun -f multinode_config &
	3120	wait
	3121
	3122	fi
[82]	3123	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3124	then
	3125
	3126	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3127	# DOES NOT EXIST
[179]	3128	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3129	then
[179]	3130	if [[ -f $hostfile ]]
	3131	then
	3132	cp $hostfile hostfile
	3133	else
	3134	(( ii = 1 ))
	3135	while (( ii <= $numprocs / $threads_per_task ))
	3136	do
	3137	echo $localhost_realname >> hostfile
	3138	(( ii = ii + 1 ))
	3139	done
	3140	fi
	3141	eval zeile=\"`head -n $ii hostfile`\"
	3142	printf "\n *** running on: $zeile"
[1]	3143	fi
[179]	3144
[1]	3145	(( ii = $numprocs / $threads_per_task ))
	3146	export OMP_NUM_THREADS=$threads_per_task
[246]	3147	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3148	if [[ $threads_per_task != 1 ]]
	3149	then
	3150	printf "\n threads per task: $threads_per_task"
	3151	fi
[102]	3152	if [[ $run_coupled_model = false ]]
[1]	3153	then
[291]	3154	if [[ "$ocean_file_appendix" = true ]]
	3155	then
	3156	echo "precursor_ocean" > runfile_atmos
	3157	else
	3158	echo "precursor_atmos" > runfile_atmos
	3159	fi
[102]	3160	printf "\n\n"
[179]	3161	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3162	then
[221]	3163	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3164	then
	3165	# export MPI_LAUNCH_TIMEOUT=360
[366]	3166	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
	3167	# export MPI_DSM_DISTRIBUTE=1
	3168	# MPI_DSM_CPULIST: pin MPI processes to cores
	3169	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
	3170	# MPI_IB_RAILS: use both IB rails on ICE2
	3171	export MPI_BUFS_PER_HOST=512
	3172	export MPI_IB_RAILS=2
[223]	3173	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3174	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3175	then
	3176	# ulimit -s 300000 # A too large stack size causes problems
	3177	# export MV2_NUM_PORTS=2
	3178	# export MV2_CPU_MAPPING=0:1:2:3
[325]	3179	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3180	fi
[179]	3181	elif [[ $host = lcxt4 ]]
	3182	then
[223]	3183	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3184	else
[223]	3185	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3186	fi
[1]	3187	else
[164]	3188
[206]	3189	# currently there is no full MPI-2 support on ICE and XT4
	3190	(( iia = $numprocs_atmos / $threads_per_task ))
	3191	(( iio = $numprocs_ocean / $threads_per_task ))
	3192	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3193	printf "\n using $coupled_mode coupling"
[102]	3194	printf "\n\n"
[164]	3195
[206]	3196	if [[ $coupled_mode = "mpi2" ]]
[164]	3197	then
[206]	3198	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3199	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3200	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3201	then
[197]	3202
[221]	3203	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3204	then
	3205	# export MPI_LAUNCH_TIMEOUT=360
	3206	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3207	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3208	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3209	then
	3210	# ulimit -s 300000 # A too large stack size causes problems
	3211	# export MV2_NUM_PORTS=2
	3212	# export MV2_CPU_MAPPING=0:1:2:3
	3213	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3214	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3215	fi
[197]	3216
[206]	3217	elif [[ $host = lcxt4 ]]
	3218	then
[197]	3219
[206]	3220	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3221	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3222
	3223	else
	3224	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3225	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3226	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3227	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3228	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3229	fi
	3230	wait
	3231
[164]	3232	else
	3233
[206]	3234	echo "coupled_run $iia $iio" > runfile_atmos
	3235	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3236	then
	3237
[221]	3238	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3239	then
	3240	# export MPI_LAUNCH_TIMEOUT=360
	3241	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3242	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3243	then
	3244	# ulimit -s 300000 # A too large stack size causes problems
	3245	# export MV2_NUM_PORTS=2
	3246	# export MV2_CPU_MAPPING=0:1:2:3
	3247	mpiexec ./a.out $ROPTS < runfile_atmos
	3248	fi
[206]	3249
	3250	elif [[ $host = lcxt4 ]]
	3251	then
	3252
	3253	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3254
[367]	3255	elif [[ $host = lck ]]
	3256	then
	3257	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
[206]	3258	fi
	3259	wait
[164]	3260	fi
[102]	3261
	3262	# if [[ $scirocco = true ]]
	3263	# then
	3264	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3265	# else
	3266	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3267	# fi
[206]	3268	fi
[1]	3269	elif [[ $host = decalpha ]]
	3270	then
[102]	3271	dmpirun -np $numprocs a.out $ROPTS
[1]	3272	elif [[ $host = lctit ]]
	3273	then
	3274	export runfile=runfile.$kennung
	3275
	3276	echo "cd $PWD" > $runfile
	3277	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3278	echo "export cpurest=$cpurest" >> $runfile
	3279	echo "export fname=$fname" >> $runfile
	3280	echo "export localhost=$localhost" >> $runfile
	3281	echo "export return_addres=$return_addres" >> $runfile
	3282	echo "export return_username=$return_username" >> $runfile
	3283	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3284	echo "export write_binary=$write_binary" >> $runfile
	3285	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3286	echo "./a.out" >> $runfile
	3287	chmod u+x $runfile
	3288
	3289	if [[ "$QUEUE" = interactive ]]
	3290	then
[102]	3291	mpirun -np $numprocs a.out $ROPTS
[1]	3292	else
[127]	3293	(( mem_tsubame = $memory / 1024.0 ))
	3294	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3295	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3296	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3297	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3298	fi
	3299
	3300	rm $runfile
	3301	else
[102]	3302	mpprun -n $numprocs a.out $ROPTS
[1]	3303	fi
	3304	[[ $? != 0 ]] && execution_error=true
	3305
	3306
	3307	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3308	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3309	then
	3310	apprentice
	3311	fi
	3312	else
[102]	3313	a.out $ROPTS
[1]	3314	fi
	3315	fi
	3316	if [[ $? != 0 \|\| $execution_error = true ]]
	3317	then
	3318
	3319	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3320	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3321	printf "\n +++ runtime error occured"
	3322	locat=execution
	3323	exit
	3324	else
[102]	3325	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3326	printf "\n$striche\n *** execution finished \n"
[260]	3327
[261]	3328	# Stop the dvr streaming server and process the dvr output in order
	3329	# to create dvrs- and html-files containing all streams
[260]	3330	if [[ "$dvrserver_id" != "" ]]
	3331	then
	3332	kill $dvrserver_id
	3333	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3334
[262]	3335	# If there is a directory, data have been output by the
	3336	# streaming server. Otherwise, user has chosen dvrp_output=local
	3337	if [[ -d DATA_DVR ]]
	3338	then
[261]	3339
[262]	3340	# Add the current dvr configuration file to the dvr output
	3341	# directory
	3342	cp .dvrserver.config DATA_DVR
	3343
	3344	# Process the dvr output (option -s for also generating
	3345	# sequence mode data)
	3346	process_dvr_output -d DATA_DVR -f $fname -s
	3347
	3348	else
	3349
	3350	# Process the local output
	3351	process_dvr_output -l -d DATA_DVR -f $fname
	3352
	3353	fi
	3354
	3355	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3356	then
	3357
	3358	# Process dvr output generated in local mode (dvrp_output=local)
	3359	process_dvr_output -l -d DATA_DVR -f $fname
	3360
[260]	3361	fi
[1]	3362	fi
	3363
	3364
	3365
	3366	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3367	(( i = 0 ))
	3368	while (( i < ioc ))
	3369	do
	3370	(( i = i + 1 ))
	3371	if (( i == 1 ))
	3372	then
	3373	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3374	fi
	3375	printf "\n >>> ${out_command[$i]}"
	3376	eval ${out_command[$i]}
	3377	if (( i == ioc ))
	3378	then
	3379	printf "\n$striche\n"
	3380	fi
	3381	done
	3382
	3383
	3384	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3385	if [[ $do_trace = true ]]
	3386	then
	3387	printf "\n\n"
	3388	ls -al
	3389	fi
	3390
	3391
	3392
	3393	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3394	(( i = 0 ))
	3395	while (( i < iout ))
	3396	do
	3397	(( i = i + 1 ))
	3398	if (( i == 1 ))
	3399	then
	3400	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3401	fi
	3402
	3403	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3404	files_for_pes=false; filetyp=file
	3405	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3406	then
	3407	files_for_pes=true; filetyp=directory
	3408	actionout[$i]=""
	3409	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3410	then
	3411	actionout[$i]=""
	3412	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3413	then
	3414	files_for_pes=true; filetyp=directory
	3415	actionout[$i]="ar"
	3416	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3417	then
	3418	actionout[$i]="ar"
	3419	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3420	then
	3421	files_for_pes=true; filetyp=directory
	3422	actionout[$i]="fl"
	3423	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3424	then
	3425	actionout[$i]="fl"
	3426	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3427	then
	3428	files_for_pes=true; filetyp=directory
	3429	actionout[$i]="tr"
	3430	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3431	then
	3432	actionout[$i]="tr"
	3433	fi
	3434
	3435	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3436	then
	3437	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3438	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3439	then
	3440	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3441	else
	3442
	3443
	3444	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3445	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3446	# REMOTE-RECHNUNGEN
	3447	if [[ "${actionout[$i]}" = tr ]]
	3448	then
	3449	if [[ $localhost != $fromhost ]]
	3450	then
	3451	if [[ $files_for_pes = false ]]
	3452	then
	3453	cps=""
	3454	cst=""
	3455	else
	3456	cps=-c
	3457	cst="/"
	3458	fi
[325]	3459	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3460	then
	3461
	3462	# TRANSFER IN EIGENSTAENDIGEM JOB
	3463	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3464	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3465	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3466	if [[ $files_for_pes = false ]]
	3467	then
	3468	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3469	else
	3470	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3471	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3472	fi
	3473
	3474	echo "set -x" > transfer_${localout[$i]}
	3475	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3476
	3477	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3478	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3479	printf "\n or higher cycle\n"
	3480	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3481
[1]	3482	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3483
	3484	if [[ $localhost = nech ]]
	3485	then
[82]	3486	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3487	else
	3488	if [[ "$LOGNAME" = b323013 ]]
	3489	then
[164]	3490	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3491	else
[164]	3492	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3493	fi
	3494	fi
	3495
	3496	else
	3497
	3498	# TRANSFER INNERHALB DIESES JOBS
	3499	transfer_failed=false
[82]	3500	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3501	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3502	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3503	[[ $? != 0 ]] && transfer_failed=true
[1]	3504
	3505	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3506	# LOKALER MASCHINE ANLEGEN
	3507	if [[ $transfer_failed = true ]]
	3508	then
	3509	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3510	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3511
	3512	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3513	# ANLEGEN.
	3514	eval local_catalog=${pathout[$i]}
	3515	if [[ ! -d $local_catalog ]]
	3516	then
	3517	printf " *** local directory does not exist. Trying to create:\n"
	3518	printf " $local_catalog \n"
	3519	mkdir -p $local_catalog
	3520	fi
	3521	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3522	transfer_problems=true
	3523	fi
	3524	fi
	3525	else
	3526
	3527	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3528	actionout[$i]=""
	3529	fi
	3530	fi
	3531
	3532
	3533	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3534	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3535	# REMOTE-RECHNUNGEN
	3536	if [[ "${actionout[$i]}" = tra ]]
	3537	then
	3538	if [[ $localhost != $fromhost ]]
	3539	then
	3540	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3541	then
	3542
	3543	# TRANSFER IN EIGENSTAENDIGEM JOB
	3544	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3545	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3546	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3547	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3548
	3549	echo "set -x" > transfer_${localout[$i]}
	3550	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3551
	3552	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3553	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3554	printf "\n or higher cycle\n"
	3555	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3556
[1]	3557	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3558
	3559	if [[ $localhost = nech ]]
	3560	then
[82]	3561	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3562	else
	3563	if [[ $LOGNAME = b323013 ]]
	3564	then
[164]	3565	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3566	else
[164]	3567	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3568	fi
	3569	fi
	3570
	3571	else
	3572
	3573	# TRANSFER INNERHALB DIESES JOBS
	3574	transfer_failed=false
[82]	3575	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3576	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3577	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3578	[[ $? != 0 ]] && transfer_failed=true
[1]	3579
	3580	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3581	# LOKALER MASCHINE ANLEGEN
	3582	if [[ $transfer_failed = true ]]
	3583	then
	3584	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3585	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3586
	3587	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3588	# ANLEGEN
	3589	eval local_catalog=${pathout[$i]}
	3590	if [[ ! -d $local_catalog ]]
	3591	then
	3592	printf " *** local directory does not exist. Trying to create:\n"
	3593	printf " $local_catalog \n"
	3594	mkdir -p $local_catalog
	3595	fi
	3596
	3597	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3598	transfer_problems=true
	3599	fi
	3600	fi
	3601	else
	3602
	3603	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3604	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3605	actionout[$i]=a
	3606	fi
	3607	fi
	3608
	3609
	3610	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3611	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3612	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3613	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3614	if [[ "${actionout[$i]}" = fl ]]
	3615	then
	3616	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3617	chmod g+rx $tmp_data_catalog
	3618	if [[ $files_for_pes = false ]]
	3619	then
	3620	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3621	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3622	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3623	else
	3624	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3625	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3626	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3627	cd ${localout[$i]}
	3628	for file in $(ls *)
	3629	do
	3630	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3631	done
	3632	cd $TEMPDIR
[1]	3633	fi
	3634
	3635
	3636	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3637	if [[ $store_on_archive_system = true ]]
	3638	then
	3639
	3640	if [[ $archive_system = asterix ]]
	3641	then
	3642	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3643	if [[ $files_for_pes = false ]]
	3644	then
	3645	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3646	else
	3647	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3648	fi
	3649	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3650	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3651	echo "then" >> archive_${frelout[$i]}
	3652	echo " do_stageout=false" >> archive_${frelout[$i]}
	3653	echo "else" >> archive_${frelout[$i]}
	3654	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3655	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3656	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3657	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3658	if [[ $files_for_pes = false ]]
	3659	then
	3660	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3661	else
	3662	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3663	fi
	3664	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3665	echo "fi" >> archive_${frelout[$i]}
	3666	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3667	elif [[ $archive_system = DMF ]]
	3668	then
	3669	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3670	if [[ $files_for_pes = false ]]
	3671	then
	3672	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3673	locat=DMF
	3674	exit
	3675	else
	3676	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3677	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3678	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3679	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3680	fi
	3681	elif [[ $archive_system = tivoli ]]
	3682	then
	3683	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3684	if [[ $files_for_pes = false ]]
	3685	then
	3686	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3687	echo "set -x" >> archive_${frelout[$i]}
	3688	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3689	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3690	else
	3691
	3692	echo "set -x" >> archive_${frelout[$i]}
	3693	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3694	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3695	cd $tmp_data_catalog
	3696	all_files=`ls -1 ${frelout[$i]}/*`
	3697	cd - > /dev/null
	3698	(( inode = 0 ))
	3699	(( tp1 = tasks_per_node + 1 ))
	3700	while (( inode < nodes ))
	3701	do
	3702	# echo "*** all_files = \"$all_files\" "
	3703	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3704	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3705	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3706	# echo "*** files = \"$files\" "
	3707	# echo "*** all_files = \"$all_files\" "
	3708	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3709	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3710	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3711	(( inode = inode + 1 ))
	3712	done
	3713	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3714	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3715	fi
	3716	elif [[ $archive_system = ut ]]
	3717	then
	3718	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3719	if [[ $files_for_pes = false ]]
	3720	then
	3721	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3722	echo "set -x" >> archive_${frelout[$i]}
	3723	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3724	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3725	else
	3726
	3727	echo "set -x" >> archive_${frelout[$i]}
	3728	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3729	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3730	cd $tmp_data_catalog
	3731	all_files=`ls -1 ${frelout[$i]}/*`
	3732	cd - > /dev/null
	3733	(( inode = 0 ))
	3734	(( tp1 = tasks_per_node + 1 ))
	3735	while (( inode < nodes ))
	3736	do
	3737	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3738	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3739	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3740	(( inode = inode + 1 ))
	3741	done
	3742	fi
	3743	elif [[ $archive_system = none ]]
	3744	then
	3745	printf " +++ archiving on $localhost not available!\n"
	3746	fi
	3747
	3748	if [[ $archive_system != none ]]
	3749	then
	3750	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3751	then
[164]	3752	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3753	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3754	elif [[ $localhost = nech ]]
	3755	then
[82]	3756	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3757	fi
	3758	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3759	fi
	3760	else
	3761	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3762	fi
	3763
	3764
	3765	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3766	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3767	if [[ $files_for_pes = false ]]
	3768	then
	3769	cat /dev/null > ${pathout[$i]}
	3770	else
	3771	mkdir -p ${pathout[$i]}
	3772	fi
	3773
	3774	fi
	3775
	3776
	3777	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3778	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3779	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3780	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3781	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3782	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3783	if [[ "${actionout[$i]}" = ar ]]
	3784	then
	3785	if [[ $files_for_pes = false ]]
	3786	then
	3787	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3788	printf "\n ${pathout[$i]}"
	3789	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3790	else
	3791	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3792	printf "\n ${pathout[$i]}"
	3793	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3794	fi
	3795	mv ${localout[$i]} ${frelout[$i]}
	3796
	3797	file_saved=false
	3798
	3799	if [[ $archive_system = asterix ]]
	3800	then
	3801	do_stageout=true
	3802	(( stageout_anz = 0 ))
	3803	while [[ $do_stageout = true ]]
	3804	do
	3805	if [[ $files_for_pes = false ]]
	3806	then
	3807	stageout ${frelout[$i]} > STAGE_OUTPUT
	3808	else
	3809	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3810	fi
	3811	cat STAGE_OUTPUT
	3812	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3813	then
	3814	file_saved=true
	3815	do_stageout=false
	3816	else
	3817	if [[ $files_for_pes = false ]]
	3818	then
	3819	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3820	else
	3821	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3822	fi
	3823	(( stageout_anz = stageout_anz + 1 ))
	3824	if (( stageout_anz == 10 ))
	3825	then
	3826	printf "\n +++ stoped after 10 unsuccessful tries!"
	3827	archive_save=false
	3828	do_stageout=false
	3829	else
	3830	printf "\n *** new try to store on archive after 15 min:"
	3831	sleep 900
	3832	fi
	3833	fi
	3834	done
	3835	elif [[ $archive_system = DMF ]]
	3836	then
	3837	if [[ $files_for_pes = false ]]
	3838	then
	3839	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3840	locat=DMF
	3841	exit
	3842	else
	3843	rm -rf $ARCHIVE/${frelout[$i]}
	3844	cp -r ${frelout[$i]} $ARCHIVE
	3845	fi
	3846	file_saved=true
	3847	elif [[ $archive_system = tivoli ]]
	3848	then
	3849	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3850	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3851	# GELEGT WERDEN
	3852	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3853	chmod g+rx $tmp_data_catalog
	3854	if [[ $files_for_pes = false ]]
	3855	then
	3856	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3857	else
	3858	mkdir $tmp_data_catalog/${frelout[$i]}
	3859	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3860	fi
	3861
	3862	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3863	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3864	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3865	if [[ $files_for_pes = false ]]
	3866	then
	3867	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3868	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3869	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3870	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3871	else
	3872	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3873	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3874	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3875	fi
	3876
[164]	3877	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3878	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3879	file_saved=true
	3880
	3881	elif [[ $archive_system = ut ]]
	3882	then
	3883	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3884	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3885	# GELEGT WERDEN
	3886	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3887	chmod g+rx $tmp_data_catalog
	3888	if [[ $files_for_pes = false ]]
	3889	then
	3890	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3891	else
	3892	mkdir $tmp_data_catalog/${frelout[$i]}
	3893	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3894	fi
	3895
	3896	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3897	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3898	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3899	if [[ $files_for_pes = false ]]
	3900	then
	3901	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3902	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3903	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3904	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3905	else
	3906	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3907	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3908	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3909	fi
	3910
[82]	3911	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3912	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3913	file_saved=true
	3914
	3915	else
	3916	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3917	archive_save=false
	3918	fi
	3919	if [[ $file_saved = true ]]
	3920	then
	3921	if [[ $files_for_pes = false ]]
	3922	then
	3923	cat /dev/null > ${pathout[$i]}
	3924	else
	3925	mkdir -p ${pathout[$i]}
	3926	fi
	3927	fi
	3928	fi
	3929
	3930	# APPEND AUF LOKALER MASCHINE
	3931	if [[ "${actionout[$i]}" = "a" ]]
	3932	then
	3933	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3934	cat ${localout[$i]} >> ${pathout[$i]}
	3935	fi
	3936
	3937	# KOPIEREN AUF LOKALER MASCHINE
	3938	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3939	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3940	then
	3941
	3942	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3943	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3944	then
	3945	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3946	if [[ $link_local_output = true ]]
	3947	then
	3948	printf " using ln -f\n"
	3949	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3950	fi
	3951	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3952	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3953	then
	3954	if [[ $link_local_output = true ]]
	3955	then
	3956	printf " ln failed, using cp...\n"
	3957	fi
	3958	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3959	fi
[1]	3960	else
	3961	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3962	if [[ $link_local_output = true ]]
	3963	then
	3964	printf " using ln -f\n"
	3965	ln -f ${localout[$i]} ${pathout[$i]}
	3966	fi
	3967	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3968	if [[ ! -f "${pathout[$i]}" ]]
	3969	then
	3970	if [[ $link_local_output = true ]]
	3971	then
	3972	printf " ln failed, using cp...\n"
	3973	fi
	3974	cp ${localout[$i]} ${pathout[$i]}
	3975	fi
[1]	3976	fi
	3977
	3978	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3979	then
	3980
	3981	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3982	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3983	# WIRD DANN KOPIERT
	3984	# PER MOVE UMBENANNT WERDEN
	3985	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3986	if [[ $link_local_output = true ]]
	3987	then
	3988	printf " using ln -f\n"
	3989	mkdir ${pathout[$i]}
	3990	cd ${localout[$i]}
	3991	for file in $(ls *)
	3992	do
	3993	ln -f $file ${pathout[$i]}
	3994	done
	3995	cd $TEMPDIR
	3996	fi
	3997	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	3998	if [[ ! -f "${pathout[$i]}/_0000" ]]
	3999	then
	4000	if [[ $link_local_output = true ]]
	4001	then
	4002	printf " ln failed for .../_0000, using cp...\n"
	4003	fi
	4004	cp -r ${localout[$i]} ${pathout[$i]}
	4005	fi
[1]	4006
	4007	fi
	4008	fi
	4009	done
	4010	if (( i != 0 ))
	4011	then
	4012	if [[ $transfer_problems = true ]]
	4013	then
	4014	printf "\n$striche\n *** OUTPUT-files saved"
	4015	printf "\n +++ WARNING: some data transfers failed! \n"
	4016	else
	4017	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4018	fi
	4019	fi
	4020
	4021
	4022	# EVENTUELL FOLGEJOB STARTEN
	4023	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4024	if [[ -f CONTINUE_RUN ]]
	4025	then
	4026
	4027	if [[ $archive_save = true ]]
	4028	then
	4029
	4030	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4031	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4032	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4033	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4034	# HANDEN
	4035	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4036	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4037	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4038	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4039	then
	4040	mc=`echo $mc \| sed 's/#/f/g'`
	4041	fi
	4042
	4043
	4044	# JOB STARTEN
	4045	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4046	echo " $mc"
	4047	printf "\n$striche\n"
	4048	if [[ $localhost != $fromhost ]]
	4049	then
	4050
[204]	4051	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4052	then
	4053	echo "*** ssh will be used to initiate restart-runs!"
	4054	echo " return_addres=\"$return_addres\" "
	4055	echo " return_username=\"$return_username\" "
	4056	if [[ $return_addres = 172.20.25.41 ]]
	4057	then
	4058	# WORKAROUND AUF SCIROCCO AM TIT
[33]	4059	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	4060	else
[33]	4061	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4062	fi
	4063	else
	4064	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4065	locat=restart; exit
	4066	fi
	4067
	4068	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4069	# DER AKTUELLE JOB ENDET
	4070	sleep 30
	4071
	4072	else
	4073
	4074	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4075	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4076	cd $LOCAL_PWD
[108]	4077	if [[ $localhost = lcfimm ]]
	4078	then
	4079	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4080	else
	4081	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4082	fi
[1]	4083	cd - > /dev/null
	4084	fi
	4085	printf "\n$striche\n *** restart-run initiated \n"
	4086
	4087
	4088	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4089	# GEHOLT WORDEN SIND, LOESCHEN
	4090	(( i = 0 ))
	4091	while (( i < iin ))
	4092	do
	4093	(( i = i + 1 ))
	4094	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4095	then
	4096	rm -r $tmp_data_catalog/${frelin[$i]}
	4097	fi
	4098	done
	4099
	4100	else
	4101
	4102	printf "\n +++ no restart-run possible, since errors occured"
	4103	printf "\n during the archive process"
	4104	fi
	4105
	4106	fi
	4107
	4108
	4109
	4110	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4111	if [[ "$email_notification" != "none" ]]
[1]	4112	then
	4113
	4114	if [[ $localhost != $fromhost ]]
	4115	then
	4116	if [[ -f CONTINUE_RUN ]]
	4117	then
	4118	echo "PALM restart run necessary" > email_text
	4119	echo "description header of actual run:" >> email_text
	4120	cat CONTINUE_RUN >> email_text
	4121	echo "mrun-command to restart:" >> email_text
	4122	echo "$mc" >> email_text
	4123	else
	4124	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4125	fi
	4126	mail $email_notification < email_text
	4127	printf "\n *** email notification sent to \"$email_notification\" "
	4128	fi
	4129	fi
	4130
	4131
	4132
	4133	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4134	cd $HOME
	4135	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4136
	4137	else
	4138
	4139
	4140	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4141	# CHENDE AKTIONEN DURCHGEFUEHRT
	4142
	4143	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4144	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4145	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4146	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4147	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4148	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4149	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4150	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4151	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4152	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4153	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4154	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4155	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4156	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4157	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4158	if [[ $use_openmp = true ]]
	4159	then
	4160	mrun_com=${mrun_com}" -O"
	4161	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4162	else
	4163	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4164	fi
	4165	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4166	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4167	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4168	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4169	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4170	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4171	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4172	if [[ $do_remote = true ]]
	4173	then
	4174	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4175	fi
	4176
	4177
	4178	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4179	jobfile=jobfile.$RANDOM
	4180
	4181
	4182	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4183	echo "mkdir $TEMPDIR" >> $jobfile
	4184	echo "cd $TEMPDIR" >> $jobfile
	4185
	4186
	4187	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4188	if [[ $do_trace = true ]]
	4189	then
	4190	echo "set -x" >> $jobfile
	4191	else
	4192	echo "set +vx" >> $jobfile
	4193	fi
	4194
	4195
[191]	4196	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4197	# DATEI FUER DEN JOB
	4198	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4199	then
	4200
[191]	4201	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4202	# KOPIEREN
	4203	if [[ $restart_run != true ]]
	4204	then
	4205	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4206	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4207	fi
[1]	4208
[191]	4209	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4210	echo "set -x" >> $jobfile
	4211	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4212	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4213
[193]	4214	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4215	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4216	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4217	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4218	echo "execute_mrun=true" >> $jobfile
	4219	echo " " >> $jobfile
	4220
[191]	4221	else
	4222
	4223	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4224	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4225	if [[ $do_compile = true ]]
	4226	then
	4227
	4228	source_catalog=SOURCES_FOR_RUN_$fname
	4229
	4230	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4231	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4232	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4233	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4234	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4235	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4236
	4237	for filename in $source_list
	4238	do
	4239	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4240	echo "cat > $filename << \"%END%\"" >> $jobfile
	4241	cat $source_catalog/$filename >> $jobfile
	4242	echo " " >> $jobfile
	4243	echo "%END%" >> $jobfile
	4244	echo " " >> $jobfile
	4245	done
	4246
[1]	4247	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4248	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4249	cat $source_catalog/Makefile >> $jobfile
[1]	4250	echo " " >> $jobfile
	4251	echo "%END%" >> $jobfile
	4252	echo " " >> $jobfile
	4253
[191]	4254	echo "cd - > /dev/null" >> $jobfile
[1]	4255
[191]	4256	fi
[1]	4257
	4258
[191]	4259	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4260	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4261	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4262	cat $config_file >> $jobfile
	4263	echo "%END%" >> $jobfile
	4264	echo " " >> $jobfile
[1]	4265
	4266
[191]	4267	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4268	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4269	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4270	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4271	echo "%END%" >> $jobfile
	4272	if [[ $host = lctit ]]
	4273	then
	4274	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4275	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4276	fi
	4277	echo "chmod u+x $mrun_script_name" >> $jobfile
	4278	echo "execute_mrun=true" >> $jobfile
	4279	echo " " >> $jobfile
[1]	4280
	4281	fi
	4282
[191]	4283
[1]	4284	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4285	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4286	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4287	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4288	if [[ $do_remote = true ]]
	4289	then
	4290	(( i = 0 ))
	4291	while (( i < iin ))
	4292	do
	4293	(( i = i + 1 ))
	4294	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4295	if [[ "${transin[$i]}" = job ]]
	4296	then
	4297	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4298	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4299	echo " " >> $jobfile
	4300	echo "%END%" >> $jobfile
	4301	else
[82]	4302	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4303	fi
	4304
	4305	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4306	echo "if [[ \$? = 1 ]]" >> $jobfile
	4307	echo "then" >> $jobfile
	4308	echo " echo \" \" " >> $jobfile
	4309	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4310	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4311	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4312	echo " execute_mrun=false" >> $jobfile
	4313	echo "fi" >> $jobfile
	4314	done
	4315	fi
	4316
	4317	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4318	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4319	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4320	echo "export LOCAL_PWD" >> $jobfile
	4321
	4322	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4323	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4324	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4325
[66]	4326	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4327	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4328	then
	4329	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4330	fi
[1]	4331
	4332	# MRUN AUF ZIELRECHNER AUFRUFEN
	4333	echo "set -x" >> $jobfile
	4334	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4335
	4336	echo 'ls -al; echo `pwd`' >> $jobfile
	4337	echo "cd \$HOME" >> $jobfile
	4338	echo "rm -rf $TEMPDIR" >> $jobfile
	4339
	4340
	4341
	4342
	4343	# JOB PER SUBJOB STARTEN
	4344	if [[ $silent = false ]]
	4345	then
	4346	printf "\n "
	4347	else
	4348	printf "\n\n"
	4349	fi
	4350
[352]	4351	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4352	rm -rf $jobfile
	4353
	4354
	4355	fi # ENDE REMOTE-TEIL
	4356
	4357
	4358
	4359	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |