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source: palm/trunk/SCRIPTS/mrun @ 291

Last change on this file since 291 was 291, checked in by raasch, 16 years ago
changes for coupling with independent precursor runs; z_i calculation with Sullivan criterion
Property svn:keywords set to `Id Rev`
File size: 162.3 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 291 2009-04-16 12:07:26Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[211]	183
[1]	184
	185	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	186
	187	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	188	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	189	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	190
	191	AddFilenames=""
	192	additional_conditions=""
	193	add_source_path=""
	194	afname=""
	195	archive_save=true
	196	archive_system=none
	197	compiler_name=""
	198	cond1=""
	199	cond2=""
	200	config_file=.mrun.config
[206]	201	coupled_dist=""
	202	coupled_mode="mpi1"
[1]	203	cpp_opts=""
[82]	204	cpp_options=""
[1]	205	cpumax=0
	206	cpurest=0
	207	delete_temporary_catalog=true
	208	do_batch=false
	209	do_compile=true
	210	do_remote=false
	211	do_stagein=true
	212	do_stageout=true
	213	do_trace=false
	214	email_notification=""
	215	exclude=""
	216	executable=""
	217	execution_error=false
[67]	218	fimm=false
[1]	219	fname=test
	220	fromhost=""
[78]	221	global_revision=""
[122]	222	group_number=none
[1]	223	host=""
	224	host_file=""
	225	hp=""
	226	ignore_archive_error=false
	227	input_list=""
	228	interpreted_config_file=""
[164]	229	job_catalog="~/job_queue"
[1]	230	job_on_file=""
	231	keep_data_from_previous_run=false
[183]	232	link_local_input=false
[149]	233	link_local_output=false
[1]	234	localhost_realname=$(hostname)
	235	local_compile=false
[260]	236	local_dvrserver_running=.FALSE.
[1]	237	locat=normal
	238	mainprog=""
	239	makefile=""
	240	mc=$0
	241	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	242	do
	243	mc=`echo $mc \| cut -f2- -d"/"`
	244	done
	245	module_files=""
	246	mrun_script_name=$mc
[82]	247	netcdf_inc=""
	248	netcdf_lib=""
[1]	249	netcdf_support=false
	250	node_usage=default
	251	numprocs=""
[206]	252	numprocs_atmos=0
	253	numprocs_ocean=0
[1]	254	OOPT=""
	255	openmp=false
	256	output_list=""
	257	package_list=""
	258	punkte="..........................................................."
	259	queue=none
	260	read_from_config=""
[5]	261	restart_run=false
[146]	262	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	263	if [[ $return_addres = 130.75.105.158 ]]
	264	then
	265	return_addres=172.20.25.41
	266	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	267	fi
	268	return_password=""
	269	return_username=$LOGNAME
	270	remotecall=false
	271	remote_username=""
[102]	272	run_coupled_model=false
[1]	273	run_mode=""
	274	scirocco=false
	275	store_on_archive_system=true
	276	striche=" ----------------------------------------------------------------------------"
	277	silent=false
	278	source_list=""
	279	source_path=SOURCE
	280	tasks_per_node=""
	281	threads_per_task=1
	282	tmpcreate=false
	283	tmp_data_catalog=""
	284	transfer_problems=false
	285	usern=$LOGNAME
	286	working_directory=`pwd`
	287	TOPT=""
	288	XOPT=""
	289	zeit=$( date \| cut -c 12-19 )
	290
	291	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	292	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	293
[66]	294	typeset -R30 calltime
[1]	295	typeset -L20 spalte1
	296	typeset -L40 spalte2
	297	typeset -L60 spalte3
	298	typeset -L35 string1=`date`
	299	typeset -L12 string2=$usern
	300	typeset -L12 string3=$localhost_realname
	301	typeset -L12 string4
	302	typeset -L12 string5
[201]	303	typeset -L30 version="MRUN 2.0 Rev$Rev: 291 $"
[1]	304
	305
	306
	307	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	308	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	309
	310	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	311	# EXPORTIERT WERDEN
	312	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	313	export group_number input_list memory numprocs output_list queue run_mode
[1]	314
	315
	316
	317	# FEHLERBEHANDLUNG
	318	# BEI EXIT:
[83]	319	trap 'rm -rf $working_directory/tmp_mrun
[69]	320	if [[ $locat != localhost ]]
[1]	321	then
[22]	322	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	323	# then
	324	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	325	#MRUN-calls on $localhost
	326	#
	327	#date and time user localhost remotehost termination mrun-command
	328	#--------------------------------------------------------------------------------------------------------------------
	329	#%STATEND%
	330	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	331	# fi
	332	#
	333	# # EINTRAG IN DIE STATISTIK-DATEI
	334	# string4=$host
	335	# string5=$locat
	336	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	337	# then
	338	# if [[ $do_batch = true ]]
	339	# then
	340	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	341	# else
	342	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	343	# fi
	344	# fi
[69]	345	echo " " > /dev/null
[1]	346	fi
	347
	348	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	349	then
	350
	351	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	352	(( i = 0 ))
	353	while (( i < iec ))
	354	do
	355	(( i = i + 1 ))
	356	printf "\n *** Execution of ERROR-command:\n"
	357	printf " >>> ${err_command[$i]}\n"
	358	eval ${err_command[$i]}
	359	done
	360	if [[ -n $interpreted_config_file ]] then
	361	rm -rf $interpreted_config_file
	362	fi
[71]	363	if [[ -n .mrun_environment ]] then
	364	rm -rf .mrun_environment
	365	fi
[1]	366	if [[ $tmpcreate = true ]]
	367	then
	368	printf "\n *** Contents of \"$TEMPDIR\":\n"
	369	ls -al; cd
	370	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	371	fi
[260]	372	if [[ "$dvrserver_id" != "" ]]
	373	then
	374	echo "+++ killing dvrserver_id=$dvrserver_id"
	375	kill $dvrserver_id
	376	fi
[1]	377	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	378	then
	379	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	380	fi
	381	printf "\n\n+++ MRUN killed \n\n"
	382	elif [[ $locat != control_c ]]
	383	then
	384	printf "\n\n --> all actions finished\n\n"
	385	printf " Bye, bye $usern !!\n\n"
	386	fi' exit
	387
	388
	389	# BEI TERMINAL-BREAK:
[83]	390	trap 'rm -rf $working_directory/tmp_mrun
[69]	391	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	392	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	393	then
	394	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	395	fi
[260]	396	if [[ "$dvrserver_id" != "" ]]
	397	then
	398	echo "+++ killing dvrserver_id=$dvrserver_id"
	399	kill $dvrserver_id
	400	fi
[1]	401	printf "\n+++ MRUN killed by \"^C\" \n\n"
	402	locat=control_c
	403	exit
	404	' 2
	405
	406
[22]	407	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	408	# BEEN SET
	409	if [[ "$PALM_BIN" = "" ]]
	410	then
	411	printf "\n +++ environment variable PALM_BIN has not been set"
	412	printf "\n please set it to the directory where the PALM scripts are located"
	413	locat=palm_bin; exit
	414	fi
[180]	415	export PATH=$PALM_BIN:$PATH
[22]	416
	417
[1]	418
	419	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	420	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	421	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	422	do
	423	case $option in
	424	(a) afname=$OPTARG;;
	425	(A) store_on_archive_system=false; mc="$mc -A";;
	426	(b) do_batch=true; mc="$mc -b";;
	427	(B) delete_temporary_catalog=false; mc="$mc -B";;
	428	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	429	(C) restart_run=true; mc="$mc -C";;
[1]	430	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	431	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	432	(F) job_on_file="-D"; mc="$mc -F";;
[122]	433	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	434	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	435	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	436	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	437	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	438	(I) ignore_archive_error=true; mc="$mc -I";;
	439	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	440	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	441	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	442	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	443	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	444	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	445	(O) use_openmp=true; mc="$mc -O";;
	446	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	447	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	448	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	449	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	450	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	451	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	452	(S) read_from_config=false; mc="$mc -S";;
	453	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	454	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	455	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	456	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	457	(v) silent=true; mc="$mc -v";;
	458	(x) do_trace=true;set -x; mc="$mc -x";;
	459	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	460	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	461	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	462	(\?) printf "\n +++ unknown option $OPTARG \n"
	463	printf "\n --> type \"$0 ?\" for available options \n"
	464	locat=parameter;exit;;
	465	esac
	466	done
	467
	468
	469	# EVTL. POSITIONSPARAMETER EINLESEN
	470	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	471	shift OPTIND-1
	472
	473
	474	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	475	if [[ "$1" = "?" ]]
	476	then
	477	(printf "\n *** mrun can be called as follows:\n"
[291]	478	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	479	printf "\n Description of available options:\n"
	480	printf "\n Option Description Default-Value"
	481	printf "\n -a base name of input files equiv. -d"
	482	printf "\n -A no archiving when using file-attribute fl"
	483	printf "\n -b batch-job on local machine ---"
	484	printf "\n -B do not delete temporary directory at end ---"
	485	printf "\n -c configuration file .mrun.config"
	486	printf "\n -d base name of files attached to program test"
	487	printf "\n -D preprocessor(cpp)-directives \"\" "
	488	printf "\n -F create remote job file only ---"
	489	printf "\n -h execution host $localhost_realname"
	490	printf "\n -i INPUT control list \"\" "
	491	printf "\n -I archiving errors of previous batch-jobs"
	492	printf "\n will be ignored"
	493	printf "\n -k keep data from previous run"
	494	printf "\n -K additional conditions for controling"
	495	printf "\n usage of conditional code and"
	496	printf "\n env-variables in configuration file \"\" "
	497	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	498	printf "\n -M Makefile name Makefile"
	499	printf "\n -n node usage (shared/not_shared) depending on -h"
	500	printf "\n -o OUTPUT control list \"\" "
	501	printf "\n -O use OpenMP ---"
	502	printf "\n -p software package list \"\" "
	503	printf "\n -q queue \"$queue\" "
	504	printf "\n -r run control list (combines -i -o) \"\" "
	505	printf "\n -s filenames of routines to be compiled \"\" "
	506	printf "\n must end with .f, .f90, .F, or .c !"
	507	printf "\n use \"..\" for more than one file and wildcards"
	508	printf "\n -s TEST compiles all files with w-permit"
	509	printf "\n -S config file interpreted by shellscript ---"
	510	printf "\n -t allowed cpu-time in seconds (batch) 0"
	511	printf "\n -T tasks per node depending on -h"
	512	printf "\n -u username on remote machine \"\" "
	513	printf "\n -v no prompt for confirmation ---"
	514	printf "\n -x tracing of mrun for debug purposes ---"
	515	printf "\n -X # of processors (on parallel machines) 1"
[291]	516	printf "\n -y add appendix \"_O\" to all local output"
	517	printf "\n files (ocean precursor runs followed by"
	518	printf "\n coupled atmosphere-ocean runs) ---"
[206]	519	printf "\n -Y run coupled model, \"#1 #2\" with"
	520	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	521	printf "\n "
	522	printf "\n Possible values of positional parameter <modus>:"
	523	printf "\n \"?\" - this outline \n\n") \| more
	524	exit
	525	elif [[ "$1" != "" ]]
	526	then
	527	printf "\n +++ positional parameter $1 unknown \n"
	528	locat=parameter; exit
	529	fi
	530
	531
	532
	533	# KURZE STARTMELDUNG
	534	printf "\n*** $version "
	535	printf "\n will be executed. Please wait ..."
	536
	537
[82]	538
	539	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	540	if [[ ! -f $config_file ]]
	541	then
	542	printf "\n\n +++ configuration file: "
	543	printf "\n $config_file"
	544	printf "\n does not exist"
	545	locat=connect; exit
	546	fi
	547
	548
	549	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	550	line=""
	551	grep "%host_identifier" $config_file > tmp_mrun
	552	while read line
	553	do
[206]	554	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	555	then
	556	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	557	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	558	if [[ $localhost_realname = $HOSTNAME ]]
[82]	559	then
	560	localhost=$host_identifier
	561	break
	562	fi
	563	fi
	564	done < tmp_mrun
	565
	566	if [[ "$localhost" = "" ]]
	567	then
	568	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	569	printf "\n for local host \"$localhost_realname\"."
	570	printf "\n Please add line"
	571	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	572	printf "\n to the configuration file."
	573	locat=localhost; exit
	574	fi
	575
	576
	577	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	578	case $localhost_realname in
	579	(breg-en0\|berni-en0) archive_system=tivoli;;
	580	(cs*) archive_system=ut;;
	581	(fimm.bccs.uib.no) fimm=true;;
	582	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	583	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	584	(scirocco) scirocco=true;;
	585	esac
	586
	587
	588
[1]	589	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	590	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	591	[[ "$afname" = "" ]] && afname=$fname
	592
	593
	594	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	595	if [[ "$run_mode" != "" ]]
	596	then
	597	input_list="$input_list $run_mode"
	598	output_list="$output_list $run_mode"
	599	fi
	600
	601
	602	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	603	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	604	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	605	# STARTET)
	606	if [[ "$fromhost" = "" ]]
	607	then
	608	fromhost=$localhost
	609	fi
	610
	611
	612	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	613	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	614	then
	615	source_list=TEST
	616	local_compile=true
	617	host=$localhost
	618	fi
	619
	620
	621	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	622	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	623	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	624	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	625	if [[ -n $host && "$host" != $localhost ]]
	626	then
	627	do_batch=true
	628	do_remote=true
	629	case $host in
[251]	630	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
[1]	631	(*) printf "\n"
[83]	632	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	633	printf "\n is not available"
[1]	634	locat=nqs; (( iec = 0 )); exit;;
	635	esac
	636	else
	637	host=$localhost
	638	fi
	639
	640
	641	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	642	if [[ -n $additional_conditions ]]
	643	then
[69]	644	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	645	cond1=`echo $additional_conditions \| cut -d" " -f1`
	646	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	647	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	648	if [[ -n $dummy ]]
	649	then
	650	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	651	locat=options; exit
	652	fi
	653	fi
	654
	655
[206]	656	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	657	if [[ $run_coupled_model = true ]]
	658	then
	659
	660	if [[ -n $coupled_dist ]]
	661	then
	662
	663	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	664	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	665
	666	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	667	then
	668
	669	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	670	printf "\n PEs (total) : $numprocs"
	671	printf "\n PEs (atmosphere): $numprocs_atmos"
	672	printf "\n PEs (ocean) : $numprocs_ocean"
	673	locat=coupling; exit
	674
	675	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	676	# THIS SHOULD BE REMOVED IN FUTURE
	677	elif (( $numprocs_ocean != $numprocs_atmos ))
	678	then
	679
	680	printf "\n +++ currently only 1:1 topologies are supported"
	681	printf "\n PEs (total) : $numprocs"
	682	printf "\n PEs (atmosphere): $numprocs_atmos"
	683	printf "\n PEs (ocean) : $numprocs_ocean"
	684	(( numprocs_atmos = $numprocs / 2 ))
	685	(( numprocs_ocean = $numprocs / 2 ))
	686	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	687
	688	fi
	689
	690	else
	691
	692	(( numprocs_ocean = $numprocs / 2 ))
	693	(( numprocs_atmos = $numprocs / 2 ))
	694
	695	fi
	696	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	697
	698	# GET coupled_mode FROM THE CONFIG FILE
	699	line=""
	700	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	701	while read line
	702	do
	703	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	704	then
	705	coupled_mode="mpi2"
	706	fi
	707	done < tmp_mrun
	708
	709	fi
	710
	711
[1]	712	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	713	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	714	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	715	then
	716	if [[ $ignore_archive_error = false ]]
	717	then
	718	printf "\n +++ data archiving of previous run failed"
	719	printf "\n see directory \~/job_queue on remote machine"
	720	locat=archive; exit
	721	else
	722	printf "\n +++ warning: data archiving in a previous run failed"
	723	printf "\n MRUN continues, trying to get backup copy"
	724	fi
	725	fi
	726
	727
	728
	729	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	730	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	731	if [[ "$read_from_config" = false ]]
	732	then
	733
	734	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	735	while read zeile
	736	do
	737	[[ $silent = false ]] && printf "."
	738
	739
	740	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	741	# ERSETZEN
	742	eval zeile=\"$zeile\"
	743
	744
	745	# INTERPRETATION DER ZEILE
[21]	746	if [[ "$(echo $zeile)" = "" ]]
[1]	747	then
[21]	748	# LEERZEILE, KEINE AKTION
	749	continue
[1]	750
[21]	751	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	752	then
	753
[1]	754	# ZEILE IST KOMMENTARZEILE
	755	true
	756
	757	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	758	then
	759
	760	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	761	zeile=$(echo $zeile \| cut -c2-)
[69]	762	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	763	var=`echo $zeile \| cut -d" " -f1`
	764	value=`echo $zeile \| cut -d" " -s -f2`
	765	for_host=`echo $zeile \| cut -d" " -s -f3`
	766	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	767	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	768
	769	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	770	then
	771
	772	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	773	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	774	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	775
	776
	777	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	778	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	779	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	780	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	781	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	782	# KONFIGURATIONSDATEI
	783	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	784	then
	785	eval $var=\$value
	786
	787	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	788	if [[ $do_trace = true ]]
	789	then
	790	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	791	fi
	792	fi
	793
	794	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	795	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	796	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	797	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	798	if [[ $var = host ]]
	799	then
	800	if [[ -n $host && "$host" != $localhost ]]
	801	then
	802	do_batch=true
	803	do_remote=true
	804	case $host in
[251]	805	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[83]	806	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	807	printf "\n is not available"
[1]	808	locat=nqs; exit;;
	809	esac
	810	else
	811	host=$localhost
	812	fi
	813	fi
	814
	815	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	816	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	817	# DEN PROGRAMMEN BENOETIGT WERDEN
	818	export $var
	819	fi
	820
	821
	822
	823
	824	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	825	then
	826
	827	# ZEILE DEFINIERT ERROR-KOMMANDO
	828	(( iec = iec + 1 ))
	829	zeile=$(echo $zeile \| cut -c4-)
	830	err_command[$iec]="$zeile"
	831
	832	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	833	then
	834
	835	# ZEILE DEFINIERT INPUT-KOMMANDO
	836	(( iic = iic + 1 ))
	837	zeile=$(echo $zeile \| cut -c4-)
	838	in_command[$iic]="$zeile"
	839
	840	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	841	then
	842
	843	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	844	(( ioc = ioc + 1 ))
	845	zeile=$(echo $zeile \| cut -c4-)
	846	out_command[$ioc]="$zeile"
	847
	848	else
	849
	850	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	851	# s2a: in/out - Feld
	852	# s2b: loc - Feld (optional)
	853	# s2c: tr/ar - Feld (optional)
[69]	854	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	855	s1=`echo $zeile \| cut -d" " -f1`
	856	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	857	s2a=$(echo $s2 \| cut -d":" -f1)
	858	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	859	then
	860	s2b=""
	861	s2c=""
	862	else
[69]	863	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	864	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	865	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	866	fi
[69]	867	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	868	s3=`echo $zeile \| cut -d" " -f3`
	869	s4=`echo $zeile \| cut -d" " -s -f4`
	870	s5=`echo $zeile \| cut -d" " -s -f5`
	871	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	872
	873
	874	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	875	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	876	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	877	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	878	# HANDEN SEIN MUSS (D.H. s2b = loc)
	879	IFSALT="$IFS"; IFS="$IFS:"
	880	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	881	then
	882	found=false
	883	for actual in $input_list
	884	do
	885	for formal in $s3
	886	do
	887	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	888	done
	889	done
	890	if [[ $found = true ]]
	891	then
	892	(( iin = iin + 1 ))
	893	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	894	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	895	extin[$iin]=$s6
	896	fi
	897	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	898	then
	899	found=false
	900	for actual in $output_list
	901	do
	902	for formal in $s3
	903	do
	904	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	905	done
	906	done
	907	if [[ $found = true ]]
	908	then
	909	(( iout = iout + 1 ))
	910	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	911	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	912	fi
	913	elif [[ "$s2a" != in && "$s2a" != out ]]
	914	then
	915	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	916	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	917	locat=connect; exit
	918	fi
	919	IFS="$IFSALT"
	920	fi
	921	done < $config_file
	922
	923	else
	924
	925
	926	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	927	[[ $silent = false ]] && printf "..."
	928	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	929	export interpreted_config_file=.icf.$RANDOM
	930
	931
[69]	932
	933	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	934	# VERFUEGUNG STELLEN
	935	cat > .mrun_environment << %%END%%
	936	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	937	config_file = '$config_file', do_remote = '$do_remote',
	938	do_trace = '$do_trace', host = '$host',
	939	input_list = '$input_list', icf = '$interpreted_config_file',
	940	localhost = '$localhost', output_list = '$output_list' /
	941
	942	%%END%%
	943
	944	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	945	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	946	mrun_memory=$memory
[127]	947	mrun_group_number=$group_number
[69]	948	mrun_cpumax=$cpumax
	949	mrun_numprocs=$numprocs
	950
[251]	951	if [[ $localhost_realname = "sx-fep" ]]
[66]	952	then
[251]	953	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	954	else
	955	interpret_config.x
	956	fi
[71]	957	rm .mrun_environment
[1]	958
[71]	959
[1]	960	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	961	chmod u+x $interpreted_config_file
	962	export PATH=$PATH:.
	963	. $interpreted_config_file
[71]	964	rm $interpreted_config_file
[1]	965
[71]	966
[69]	967	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	968	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	969	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	970	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	971	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	972
[1]	973	fi
	974
	975
	976	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	977	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	978	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	979	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	980	if [[ "$SOURCES_COMPLETE" = "" ]]
	981	then
	982
	983	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	984	# VEREINBART WURDE
	985	source_path=""
	986	line=""
	987	grep "%source_path" $config_file > tmp_mrun
	988	while read line
	989	do
	990	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	991	then
	992	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	993	then
	994	global_source_path=`echo $line \| cut -d" " -f2`
	995	fi
	996	fi
	997	done < tmp_mrun
	998
	999	line=""
	1000	found=false
	1001	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1002	while read line
	1003	do
	1004	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1005	then
	1006	if [[ $found = true ]]
	1007	then
	1008	printf "\n\n +++ more than one source path found in configuration file"
	1009	printf "\n for local host \"$localhost\" "
	1010	locat=source_path; exit
	1011	fi
	1012	source_path=`echo $line \| cut -d" " -f2`
	1013	found=true
	1014	fi
	1015	done < tmp_mrun
	1016	rm tmp_mrun
	1017
	1018	if [[ "$source_path" = "" ]]
	1019	then
	1020	if [[ "$global_source_path" != "" ]]
	1021	then
	1022	source_path=$global_source_path
	1023	else
	1024	printf "\n\n +++ no source path found in configuration file"
	1025	printf "\n for local host \"$localhost\" "
	1026	locat=source_path; exit
	1027	fi
	1028	fi
	1029	eval source_path=$source_path
	1030
	1031	if [[ ! -d $source_path ]]
	1032	then
	1033	printf "\n\n +++ source path \"$source_path\" on local host"
	1034	printf "\n \"$localhost\" does not exist"
	1035	locat=source_path; exit
	1036	fi
	1037
	1038	fi
	1039
	1040
[78]	1041	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1042	# DURCH OPTION -G MITGETEILT)
	1043	if [[ "$global_revision" = "" ]]
	1044	then
	1045	global_revision=`svnversion $source_path 2>/dev/null`
	1046	global_revision="Rev: $global_revision"
	1047	fi
[1]	1048
[78]	1049
[1]	1050	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1051	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1052	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1053	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1054	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1055	if [[ -n $host && "$host" != $localhost ]]
	1056	then
	1057	do_batch=true
	1058	do_remote=true
	1059	case $host in
[251]	1060	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[1]	1061	(*) printf "\n"
[83]	1062	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1063	printf "\n is not available"
[1]	1064	locat=nqs; (( iec = 0 )); exit;;
	1065	esac
	1066	else
	1067	host=$localhost
	1068	fi
	1069
	1070
	1071	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1072	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1073	then
	1074
	1075	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1076	if [[ ! -n $numprocs ]]
	1077	then
	1078	printf "\n"
	1079	printf "\n +++ option \"-K parallel\" requires additional specification"
	1080	printf "\n of the number of processors to be used by"
	1081	printf "\n mrun-option \"-X\" or by environment-variable"
	1082	printf "\n \"numprocs\" in the configuration file"
	1083	locat=numprocs; (( iec = 0 )); exit
	1084	fi
	1085
	1086	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1087	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1088	# GESAMTPROZESSORANZAHL IST
[251]	1089	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1090	then
	1091	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1092	(( ival = $tasks_per_node ))
	1093	(( pes = numprocs ))
	1094	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1095	# then
	1096	# (( pes = pes - 1 ))
	1097	# fi
	1098	(( ii = pes / ival ))
	1099	if (( pes - ii * ival > 0 ))
	1100	then
	1101	printf "\n"
	1102	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1103	printf "\n divisor of the total number of processors (option \"-X\")"
	1104	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1105	locat=tasks_per_node; (( iec = 0 )); exit
	1106	fi
	1107	fi
	1108
	1109	# IBMY HAT NUR EINEN KNOTEN
	1110	if [[ $host = ibmy ]]
	1111	then
	1112	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1113	then
	1114	printf "\n"
	1115	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1116	printf "\n total number of processors (option \"-X\")"
	1117	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1118	locat=tasks_per_node; (( iec = 0 )); exit
	1119	fi
	1120	fi
	1121
	1122	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1123	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1124	if [[ $use_openmp = true ]]
	1125	then
	1126	threads_per_task=$tasks_per_node
	1127	tasks_per_node=1
	1128	fi
	1129	OOPT="-O $threads_per_task"
	1130	TOPT="-T $tasks_per_node"
	1131
	1132	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1133	if [[ "$tasks_per_node" != "" ]]
	1134	then
	1135	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1136	fi
	1137
	1138	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1139	# SETZEN
	1140	if [[ $node_usage = default ]]
	1141	then
	1142	if [[ $host = ibms ]]
	1143	then
	1144	node_usage=shared
[118]	1145	elif [[ $host = lctit ]]
	1146	then
[265]	1147	node_usage=RAM64GB
[181]	1148	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1149	then
	1150	node_usage=singlejob
[1]	1151	else
	1152	node_usage=not_shared
	1153	fi
	1154	fi
[181]	1155
[265]	1156	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1157	then
	1158	printf "\n"
	1159	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1160	printf "\n \"shared\" or \"not_shared\""
	1161	locat=tasks_per_node; (( iec = 0 )); exit
	1162	fi
	1163
	1164	fi
	1165
	1166	# PRUEFEN, OB HOSTFILE EXISTIERT
	1167	if [[ -n $hostfile ]]
	1168	then
	1169	if [[ ! -f $hostfile ]]
	1170	then
	1171	printf "\n"
	1172	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1173	locat=hostfile; exit
	1174	fi
	1175	fi
	1176
	1177	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1178	if [[ $host = ibmy && $do_remote = false ]]
	1179	then
	1180	if [[ ! -f $HOME/.rhosts ]]
	1181	then
	1182	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1183	printf "\n\n *** file:"
	1184	printf "\n $HOME/.rhosts"
	1185	printf "\n was created\n"
	1186	fi
	1187	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1188	then
	1189	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1190	printf "\n\n *** file:"
	1191	printf "\n $HOME/.rhosts"
	1192	printf "\n was extended by the name of the current host\n"
	1193	fi
	1194	fi
	1195
	1196
	1197
	1198	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1199	if [[ $queue = none ]]
	1200	then
	1201	case $host in
	1202	(ibmb) if [[ $node_usage = shared ]]
	1203	then
	1204	queue=cshare
	1205	else
	1206	queue=csolo
	1207	fi;;
	1208	(ibmh) if [[ $node_usage = shared ]]
	1209	then
	1210	queue=cshare
	1211	else
	1212	queue=csolo
	1213	fi;;
	1214	(ibmy) queue=parallel;;
[191]	1215	(lcsgib) queue=bigq;;
	1216	(lcsgih) queue=bigq;;
[265]	1217	(lctit) queue=RAM64GB;;
[1]	1218	(nech) queue=none;;
[253]	1219	(necriam) queue=SP;;
[1]	1220	(unics) queue=unics;;
	1221	esac
	1222	fi
	1223
	1224
	1225	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1226	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1227	# ERMITTELN
	1228	(( i = 0 ))
	1229	while (( i < iin ))
	1230	do
	1231	(( i = i + 1 ))
	1232	(( maxcycle = 0 ))
	1233
	1234	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1235	if [[ "${actionin[$i]}" = di ]]
	1236	then
	1237	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1238	# REM-MASCHINE AUSWERTEN
	1239	eval filename=${pathin[$i]}/${endin[$i]}
	1240	else
	1241	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1242	# REM-MASCHINE AUSWERTEN
	1243	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1244	fi
	1245
	1246	# PRUEFEN AUF VORHANDENSEIN
	1247	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1248	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1249	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1250	then
	1251	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1252	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1253	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1254	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1255	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1256	if [[ "${transin[$i]}" != "locopt" ]]
	1257	then
	1258	printf "\n\n +++ INPUT-file: "
	1259	if [[ "${extin[$i]}" = "" ]]
	1260	then
	1261	printf "\n $filename"
	1262	else
	1263	printf "\n $filename.${extin[$i]}"
	1264	fi
	1265	printf "\n does not exist\n"
	1266	locat=input; exit
	1267	else
	1268	transin[$i]="unavailable"
	1269	fi
	1270	else
	1271
	1272	# ZYKLUSNUMMER FESTSTELLEN
	1273	ls -1 -d $filename > filelist 2>/dev/null
	1274	ls -1 -d $filename.* >> filelist 2>/dev/null
	1275	while read zeile
	1276	do
	1277	cycle=$(print $zeile \| cut -f2 -d".")
	1278	if [[ "$cycle" = "$zeile" ]]
	1279	then
	1280	(( icycle = 0 ))
	1281	elif [[ "$cycle" = "${extin[$i]}" ]]
	1282	then
	1283	(( icycle = 0 ))
	1284	else
	1285	(( icycle = $cycle ))
	1286	fi
	1287	if (( icycle > maxcycle ))
	1288	then
	1289	(( maxcycle = icycle ))
	1290	file_to_be_used=$zeile
	1291	fi
	1292	done <filelist
	1293	rm filelist
	1294
	1295	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1296	if (( maxcycle > 0 ))
	1297	then
	1298	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1299	then
	1300	filename=${filename}.$maxcycle.${extin[$i]}
	1301	else
	1302	filename=${filename}.$maxcycle
	1303	fi
	1304	else
	1305	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1306	then
	1307	filename=${filename}.${extin[$i]}
	1308	fi
	1309	fi
	1310
	1311	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1312	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1313	absnamein[$i]=$filename
	1314	if (( maxcycle > 0 ))
	1315	then
	1316	if [[ "${actionin[$i]}" = di ]]
	1317	then
	1318	frelin[$i]=${endin[$i]}.$maxcycle
	1319	else
	1320	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1321	fi
	1322	else
	1323	if [[ "${actionin[$i]}" = di ]]
	1324	then
	1325	frelin[$i]=${endin[$i]}
	1326	else
	1327	frelin[$i]=${afname}${endin[$i]}
	1328	fi
	1329	fi
	1330
	1331	fi
	1332	done
	1333
	1334
	1335	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1336	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1337	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1338	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1339	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1340	(( i = 0 ))
	1341	while (( i < iout ))
	1342	do
	1343	(( i = i + 1 ))
	1344	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1345	then
[260]	1346	if [[ "${actionout[$i]}" = tr ]]
[1]	1347	then
	1348	actionout[$i]=""
[260]	1349	elif [[ "${actionout[$i]}" = trpe ]]
	1350	then
	1351	actionout[$i]=pe
[1]	1352	elif [[ "${actionout[$i]}" = tra ]]
	1353	then
	1354	actionout[$i]=a
	1355	fi
	1356	(( maxcycle = 0 ))
	1357	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1358	eval catalogname=${pathout[$i]}
	1359	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1360	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1361	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1362	then
	1363
	1364	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1365	if cat /dev/null > $filename
	1366	then
	1367	rm $filename
	1368	else
	1369
	1370	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1371	if [[ ! -d $catalogname ]]
	1372	then
	1373	if mkdir -p $catalogname
	1374	then
	1375	printf "\n\n *** directory:"
	1376	printf "\n $catalogname"
	1377	printf "\n was created\n"
	1378	else
	1379	printf "\n\n +++ OUTPUT-file:"
	1380	printf "\n $filename"
	1381	printf "\n cannot be created, because directory does not exist"
	1382	printf "\n and cannot be created either"
	1383	printf "\n"
	1384	locat=output ; exit
	1385	fi 2>/dev/null
	1386	else
	1387	printf "\n\n +++ OUTPUT-file:"
	1388	printf "\n $filename"
	1389	printf "\n cannot be created, although directory exists"
	1390	printf "\n"
	1391	locat=output ; exit
	1392	fi
	1393	fi 2>/dev/null
	1394	else
	1395
	1396	# ZYKLUSNUMMER FESTSTELLEN
	1397	ls -1 -d $filename > filelist 2>/dev/null
	1398	ls -1 -d $filename.* >> filelist 2>/dev/null
	1399	while read zeile
	1400	do
	1401	cycle=$(print $zeile \| cut -f2 -d".")
	1402	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1403	then
	1404	(( icycle = 1 ))
	1405	else
	1406	(( icycle = $cycle + 1 ))
	1407	fi
	1408	if (( icycle > maxcycle ))
	1409	then
	1410	(( maxcycle = icycle ))
	1411	fi
	1412	done <filelist
	1413	rm filelist
	1414	fi
	1415
	1416	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1417	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1418	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1419	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1420	if [[ "${actionout[$i]}" != a ]]
	1421	then
	1422	if (( maxcycle > 0 ))
	1423	then
	1424	filename=${filename}.$maxcycle
	1425	if cat /dev/null > $filename
	1426	then
	1427	rm $filename
	1428	else
	1429	printf "\n +++ OUTPUT-file:"
	1430	printf "\n $filename"
	1431	printf "\n cannot be created"
	1432	locat=output ; exit
	1433	fi
	1434	fi
	1435	else
	1436	(( maxcycle = maxcycle - 1 ))
	1437	if (( maxcycle > 0 ))
	1438	then
	1439	filename=${filename}.$maxcycle
	1440	fi
	1441	fi
	1442
	1443	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1444	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1445	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1446	pathout[$i]=$filename
	1447	if (( maxcycle > 0 ))
	1448	then
	1449	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1450	else
	1451	frelout[$i]=${fname}${endout[$i]}
	1452	fi
	1453
	1454	fi
	1455	done
	1456
	1457
[260]	1458	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1459	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1460	then
[260]	1461	if [[ "$dvr_inc" = "" ]]
[83]	1462	then
[260]	1463	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1464	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1465	locat=dvr; exit
[83]	1466	fi
[260]	1467	if [[ "$dvr_lib" = "" ]]
[83]	1468	then
[260]	1469	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1470	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1471	locat=dvr; exit
[83]	1472	fi
	1473	fi
	1474
	1475
[1]	1476	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1477	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1478	# UEBERSETZT ZU WERDEN)
	1479	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1480	then
	1481	printf "\n +++ neither main program nor executable defined"
	1482	locat=source; exit
	1483	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1484	then
	1485	printf "\n +++ main program as well as executable defined"
	1486	locat=source; exit
	1487	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1488	then
	1489	do_compile=false
	1490	fi
	1491
	1492
[191]	1493	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1494	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1495	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1496	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1497	then
	1498	rm -rf SOURCES_FOR_RUN_$fname
	1499	mkdir SOURCES_FOR_RUN_$fname
	1500	fi
	1501
	1502
[1]	1503	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1504	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1505	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1506	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1507	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1508	then
	1509
[5]	1510	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1511	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1512
	1513
	1514	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1515	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1516	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1517	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1518	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1519	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1520	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1521	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1522	# GESAMMELT
[5]	1523	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1524	then
	1525
	1526	source_list=""
	1527	cd $source_path
	1528
	1529
	1530	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1531	Names=$(ls -1 *.f90 2>&1)
	1532	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1533	Names=$(ls -1 *.F90 2>&1)
	1534	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1535	Names=$(ls -1 *.F 2>&1)
	1536	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1537	Names=$(ls -1 *.f 2>&1)
	1538	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1539	Names=$(ls -1 *.c 2>&1)
	1540	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1541
	1542
	1543	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1544	for dateiname in $Filenames
	1545	do
	1546	if [[ -w $dateiname ]]
	1547	then
	1548	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1549	then
	1550	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1551	source_list=$source_list"$dateiname "
	1552	fi
	1553	fi
	1554	done
	1555
	1556	cd - > /dev/null
	1557
	1558
[5]	1559	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1560	then
	1561
	1562	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1563	source_list=""
	1564	cd $source_path
	1565
	1566
	1567	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1568	if [[ ! -d .svn ]]
	1569	then
	1570	printf "\n\n +++ source directory"
	1571	printf "\n \"$source_path\" "
	1572	printf "\n is not under control of \"subversion\"."
	1573	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
	1574	fi
	1575
	1576
	1577	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1578	Filenames=""
[69]	1579	svn status > tmp_mrun
	1580	while read line
[5]	1581	do
	1582	firstc=`echo $line \| cut -c1`
	1583	if [[ $firstc = M \|\| $firstc = "?" ]]
	1584	then
	1585	Name=`echo "$line" \| cut -c8-`
	1586	extension=`echo $Name \| cut -d. -f2`
	1587	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1588	then
	1589	Filenames="$Filenames "$Name
	1590	fi
	1591	fi
[69]	1592	done < tmp_mrun
[5]	1593
	1594
	1595	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1596	for dateiname in $Filenames
	1597	do
	1598	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1599	source_list=$source_list"$dateiname "
	1600	done
	1601
	1602	cd - > /dev/null
	1603
	1604
[1]	1605	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1606	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1607	# VORHANDEN
[5]	1608	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1609	then
	1610
	1611	cd $source_path
	1612
	1613	for filename in $source_list
	1614	do
	1615
	1616	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1617	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1618	then
	1619	printf "\n +++ source code file: $filename"
	1620	printf "\n must not contain (\"/\") "
	1621	locat=source; exit
	1622	fi
	1623
	1624	if [[ ! -f $filename ]]
	1625	then
	1626	printf "\n +++ source code file: $filename"
	1627	printf "\n does not exist"
	1628	locat=source; exit
	1629	else
	1630	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1631	fi
	1632
	1633	done
	1634
	1635	cd - > /dev/null
	1636
	1637	fi
	1638
	1639
	1640	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1641	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1642	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1643	if [[ $restart_run != true ]]
[1]	1644	then
	1645
	1646	if [[ ! -f "$source_path/$mainprog" ]]
	1647	then
	1648	printf "\n\n +++ main program: $mainprog"
	1649	printf "\n does not exist in source directory"
	1650	printf "\n \"$source_path\"\n"
	1651	locat=source; exit
	1652	else
	1653	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1654	then
	1655	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1656	source_list=${mainprog}" $source_list"
	1657	fi
	1658	fi
	1659	fi
	1660
	1661
[211]	1662	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1663	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1664	if [[ "$restart_run" != true ]]
	1665	then
	1666	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1667	if [[ ! -f $makefile ]]
	1668	then
	1669	printf "\n +++ file \"$makefile\" does not exist"
	1670	locat=make; exit
	1671	else
	1672	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1673	fi
	1674	fi
	1675
	1676
[1]	1677	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1678	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1679	then
	1680
	1681	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1682	if [[ ! -d $add_source_path ]]
	1683	then
	1684	printf "\n\n +++ WARNING: additional source code directory"
	1685	printf "\n \"$add_source_path\" "
	1686	printf "\n does not exist or is not a directory."
	1687	printf "\n No source code will be used from this directory!\n"
	1688	add_source_path=""
	1689	sleep 3
	1690	else
	1691
	1692	cd $add_source_path
[211]	1693	found=false
[1]	1694
	1695	Names=$(ls -1 *.f90 2>&1)
	1696	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1697	Names=$(ls -1 *.F90 2>&1)
	1698	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1699	Names=$(ls -1 *.F 2>&1)
	1700	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1701	Names=$(ls -1 *.f 2>&1)
	1702	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1703	Names=$(ls -1 *.c 2>&1)
	1704	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1705
	1706	cd - > /dev/null
	1707	cd SOURCES_FOR_RUN_$fname
	1708
[211]	1709	# COPY MAKEFILE IF EXISTING
	1710	if [[ -f $add_source_path/Makefile ]]
	1711	then
	1712	printf "\n\n *** user Makefile from directory"
	1713	printf "\n \"$add_source_path\" is used \n"
	1714	sleep 1
	1715	cp $add_source_path/Makefile .
	1716	fi
	1717
[1]	1718	for dateiname in $AddFilenames
	1719	do
	1720	if [[ -f $dateiname ]]
	1721	then
	1722	printf "\n +++ source code file \"$dateiname\" found in additional"
	1723	printf "\n source code directory \"$add_source_path\" "
[211]	1724	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1725	printf "\n from directory \"$source_path\"."
[1]	1726	locat=source; exit
	1727	fi
	1728
	1729	cp $add_source_path/$dateiname .
	1730	source_list="$source_list $dateiname"
	1731
[211]	1732	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1733	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1734	then
	1735	printf "\n\n +++ user file \"$dateiname\" "
	1736	printf "\n is not listed in Makefile \n"
	1737	locat=source; exit
	1738	else
	1739
[1]	1740	# Default User-Interface von der Liste entfernen, falls Datei
	1741	# ein User-Interface enthaelt
[211]	1742	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1743	# then
	1744	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1745	# then
	1746	# rm -rf user_interface.f90
	1747	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1748	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1749	# printf "\n since a user-interface is found in file"
	1750	# printf "\n \"$add_source_path/$dateiname\" \n"
	1751	# sleep 3
	1752	# else
	1753	if [[ $found = false ]]
[1]	1754	then
[211]	1755	found=true
	1756	printf "\n\n *** following user file(s) added to the"
	1757	printf " files to be translated:\n "
[1]	1758	fi
[211]	1759	printf "$dateiname "
	1760	sleep 0.5
[1]	1761	fi
	1762	done
[211]	1763	[[ $found = true ]] && printf "\n"
[1]	1764	cd - > /dev/null
	1765	fi
	1766	fi
	1767
	1768
	1769	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1770	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1771	if [[ $restart_run != true && -n $package_list ]]
[1]	1772	then
	1773
	1774	cd $source_path
	1775
	1776	for package in $package_list
	1777	do
	1778
	1779	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1780
	1781	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1782	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1783	# LIEFERT
	1784	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1785
	1786
	1787	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1788	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1789	for source_list_name in $package_source_list
	1790	do
	1791	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1792	then
	1793
	1794	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1795	ending=`echo $source_list_name \| cut -f2 -d.`
	1796	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1797	then
	1798	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1799	source_list="$source_list $source_list_name"
	1800	fi
	1801	fi
	1802	done
	1803	done
	1804
	1805	cd - > /dev/null
	1806	fi
	1807
	1808
	1809	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1810	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1811	# if [[ "$restart_run" != true ]]
	1812	# then
	1813	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1814	# if [[ ! -f $makefile ]]
	1815	# then
	1816	# printf "\n +++ file \"$makefile\" does not exist"
	1817	# locat=make; exit
	1818	# else
	1819	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1820	# fi
	1821	# fi
[1]	1822
	1823	fi # do_compile=true
	1824
	1825
	1826	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1827	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1828	if [[ $do_compile = true ]]
	1829	then
	1830
	1831	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1832	# ZUSAMMENSETZEN
[83]	1833	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1834	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1835	then
[82]	1836	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1837	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1838	then
[82]	1839	cpp_options="$cpp_options -D__nec"
	1840	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1841	then
	1842	cpp_options="$cpp_options -D__lc"
[1]	1843	else
[82]	1844	cpp_options="$cpp_options -D__$localhost"
[1]	1845	fi
[83]	1846
	1847	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1848	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1849	then
[82]	1850	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1851	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1852	else
[82]	1853	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1854	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1855	fi
[83]	1856
	1857	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1858	if [[ -n $package_list ]]
	1859	then
	1860	for package in $package_list
	1861	do
	1862	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1863	then
	1864	if [[ $package != "dvrp_graphics+1PE" ]]
	1865	then
[82]	1866	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1867	else
[82]	1868	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1869	export use_seperate_pe_for_dvrp_output=true
	1870	fi
	1871	else
	1872	if [[ $package != "dvrp_graphics+1PE" ]]
	1873	then
[82]	1874	cpp_options="$cpp_options -D__$package"
[1]	1875	else
[82]	1876	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1877	export use_seperate_pe_for_dvrp_output=true
	1878	fi
	1879	fi
	1880	done
	1881	fi
[83]	1882
	1883	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1884	if [[ -n $cpp_opts ]]
	1885	then
	1886	for popts in $cpp_opts
	1887	do
[82]	1888	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1889	then
	1890	cpp_options="${cpp_options},-D__$popts=__$popts"
	1891	else
	1892	cpp_options="$cpp_options -D__$popts"
	1893	fi
[1]	1894	done
	1895	fi
	1896
	1897	else
	1898
	1899
	1900	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1901	if [[ $do_remote = false ]]
	1902	then
	1903	if [[ ! -f $executable ]]
	1904	then
	1905	printf "\n +++ executable file: $executable"
	1906	printf "\n does not exist"
	1907	locat=executable; exit
	1908	fi
	1909	fi
	1910	fi
	1911
	1912
	1913	# JOBMODUS FESTSTELLEN
	1914	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1915	then
	1916	jobmo=BATCH
	1917	else
	1918	jobmo=INTERACTIVE
	1919	fi
	1920
	1921
	1922	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1923	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1924	if [[ "$compiler_name" = "" ]]
	1925	then
[82]	1926
[220]	1927	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1928	locat=compiler_name; exit
	1929
[1]	1930	fi
	1931
	1932
[251]	1933	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1934	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1935
	1936
	1937
	1938	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1939	kennung=$RANDOM
	1940	if [[ "$tmp_user_catalog" = "" ]]
	1941	then
	1942	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1943	then
	1944	tmp_user_catalog=$TMPDIR
	1945	elif [[ $localhost = nech ]]
	1946	then
	1947	tmp_user_catalog=$WRKSHR
	1948	else
	1949	tmp_user_catalog=/tmp
	1950	fi
	1951	fi
	1952	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1953
	1954
	1955	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1956	# BESTIMMEN
	1957	if [[ "$tmp_data_catalog" = "" ]]
	1958	then
	1959	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1960	then
	1961	tmp_data_catalog=$WORK/mrun_restart_data
	1962	elif [[ $localhost = nech ]]
	1963	then
	1964	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1965	else
	1966	tmp_data_catalog=/tmp/mrun_restart_data
	1967	fi
	1968	fi
	1969
	1970
	1971	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1972	# ERSETZEN
	1973	if [[ $do_remote = false && $do_compile = true ]]
	1974	then
	1975	eval fopts=\"$fopts\"
	1976	eval lopts=\"$lopts\"
	1977	fi
	1978
	1979
	1980
	1981	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1982	fopts="$fopts $netcdf_inc $dvr_inc"
	1983	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1984	ROPTS="$ropts"
[179]	1985	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
[1]	1986	then
	1987	XOPT="-X $numprocs"
	1988	fi
	1989
	1990
	1991
	1992	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1993	# GRAMM BENOETIGT
	1994	done=false
	1995	while [[ $done = false ]]
	1996	do
	1997	cputime=$cpumax
	1998	if (( $cputime == 0 ))
	1999	then
[246]	2000	if [[ $do_batch = true ]]
	2001	then
	2002	printf "\n +++ cpu-time is undefined"
	2003	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2004	printf "\n >>> "
	2005	read cputime 1>/dev/null 2>&1
	2006	else
	2007	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2008	fi
[1]	2009	else
	2010	done=true
	2011	fi
	2012	cpumax=$cputime
	2013	done
	2014
	2015	(( minuten = cputime / 60 ))
	2016	(( sekunden = cputime - minuten * 60 ))
	2017
	2018
	2019	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2020	if [[ $do_batch = true ]]
	2021	then
	2022	done=false
	2023	while [[ $done = false ]]
	2024	do
	2025	if (( memory == 0 ))
	2026	then
	2027	printf "\n +++ memory demand is undefined"
	2028	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2029	printf "\n >>> "
	2030	read memory 1>/dev/null 2>&1
	2031	else
	2032	done=true
	2033	fi
	2034	done
	2035	fi
	2036
	2037
	2038	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2039	if [[ $do_remote = true && -z $remote_username ]]
	2040	then
	2041	while [[ -z $remote_username ]]
	2042	do
	2043	printf "\n +++ username on remote host \"$host\" is undefined"
	2044	printf "\n >>> Please type username:"
	2045	printf "\n >>> "
	2046	read remote_username
	2047	done
	2048	mc="$mc -u$remote_username"
	2049	fi
	2050
[221]	2051
	2052	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2053	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2054	then
	2055	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2056	fi
	2057
	2058
	2059
[1]	2060	###########################################################################
	2061	# HEADER-AUSGABE
	2062	###########################################################################
	2063
	2064
	2065	calltime=$(date)
	2066	printf "\n"
	2067	# [[ $silent = false ]] && clear
	2068	printf "#--------------------------------------------------------------# \n"
	2069	printf "\| $version$calltime \| \n"
	2070	printf "\| \| \n"
	2071	spalte1="called on:"; spalte2=$localhost_realname
	2072	printf "\| $spalte1$spalte2 \| \n"
	2073	if [[ $local_compile = false ]]
	2074	then
	2075	if [[ $do_remote = true ]]
	2076	then
	2077	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2078	else
	2079	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2080	fi
	2081	else
	2082	spalte1="compiling test only!"; spalte2=""
	2083	fi
	2084	printf "\| $spalte1$spalte2 \| \n"
	2085	if [[ -n $numprocs ]]
	2086	then
	2087	spalte1="number of PEs:"; spalte2=$numprocs
	2088	printf "\| $spalte1$spalte2 \| \n"
	2089	fi
	2090	if [[ -n $tasks_per_node ]]
	2091	then
	2092	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2093	printf "\| $spalte1$spalte2 \| \n"
	2094	fi
	2095	if [[ $threads_per_task != 1 ]]
	2096	then
	2097	spalte1="threads per task:"; spalte2="$threads_per_task"
	2098	printf "\| $spalte1$spalte2 \| \n"
	2099	fi
	2100	printf "\| \| \n"
	2101	if [[ $do_compile = true ]]
	2102	then
[82]	2103	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2104	printf "\| $spalte1$spalte2 \| \n"
[82]	2105	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2106	while [[ "$zeile" != "" ]]
	2107	do
	2108	spalte1=""
	2109	spalte2=$zeile
	2110	printf "\| $spalte1$spalte2 \| \n"
	2111	zeile=$(echo "$zeile" \| cut -c41-)
	2112	done
	2113
[82]	2114	spalte1=compiler-options:; spalte2="$fopts"
[1]	2115	printf "\| $spalte1$spalte2 \| \n"
[82]	2116	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2117	while [[ "$zeile" != "" ]]
	2118	do
	2119	spalte1=""
	2120	spalte2=$zeile
	2121	printf "\| $spalte1$spalte2 \| \n"
	2122	zeile=$(echo "$zeile" \| cut -c41-)
	2123	done
	2124
[82]	2125	spalte1=linker-options:; spalte2=$lopts
[1]	2126	printf "\| $spalte1$spalte2 \| \n"
[82]	2127	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2128	while [[ "$zeile" != "" ]]
	2129	do
	2130	spalte1=""
	2131	spalte2=$zeile
	2132	printf "\| $spalte1$spalte2 \| \n"
	2133	zeile=$(echo "$zeile" \| cut -c41-)
	2134	done
	2135
	2136	spalte1="main program":; spalte2=$mainprog
	2137	printf "\| $spalte1$spalte2 \| \n"
	2138	else
	2139	spalte1=executable:; spalte2=$executable
	2140	printf "\| $spalte1$spalte2 \| \n"
	2141	fi
	2142	printf "\| \| \n"
	2143	spalte1="base name of files":; spalte2=$fname
	2144	printf "\| $spalte1$spalte2 \| \n"
	2145	if [[ $fname != $afname ]]
	2146	then
	2147	spalte1="base name of input files":; spalte2=$afname
	2148	printf "\| $spalte1$spalte2 \| \n"
	2149	fi
	2150	spalte1="INPUT control list":; spalte2=$input_list
	2151	printf "\| $spalte1$spalte2 \| \n"
	2152	spalte1="OUTPUT control list":; spalte2=$output_list
	2153	printf "\| $spalte1$spalte2 \| \n"
	2154
	2155	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2156	then
	2157	spalte1="memory demand / PE":; spalte2="$memory MB"
	2158	printf "\| $spalte1$spalte2 \| \n"
	2159	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2160	printf "\| $spalte1$spalte2 \| \n"
	2161	fi
	2162
	2163	if [[ $do_compile = true ]]
	2164	then
	2165	printf "\| \| \n"
	2166	printf "\| Files to be compiled: \| \n"
	2167	zeile=$source_list
	2168	while [[ "$zeile" != "" ]]
	2169	do
	2170	spalte3=$zeile
	2171	printf "\| $spalte3 \| \n"
	2172	zeile=$(echo "$zeile" \| cut -c61-)
	2173	done
	2174	fi
	2175	printf "#--------------------------------------------------------------#"
	2176
	2177
	2178
	2179	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2180	if [[ $do_trace = true ]]
	2181	then
	2182	(( i = 0 ))
	2183	while (( i < iin ))
	2184	do
	2185	(( i = i + 1 ))
	2186	if (( i == 1 ))
	2187	then
	2188	printf "\n\n >>> INPUT-file assignments:\n"
	2189	fi
	2190	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2191	done
	2192	(( i = 0 ))
	2193	while (( i < iout ))
	2194	do
	2195	(( i = i + 1 ))
	2196	if (( i == 1 ))
	2197	then
	2198	printf "\n\n >>> OUTPUT-file assignments:\n"
	2199	fi
	2200	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2201	done
	2202	(( i = 0 ))
	2203	while (( i < iic ))
	2204	do
	2205	(( i = i + 1 ))
	2206	if (( i == 1 ))
	2207	then
	2208	printf "\n\n >>> INPUT-commands:\n"
	2209	fi
	2210	printf "\n ${in_command[$i]}"
	2211	done
	2212	(( i = 0 ))
	2213	while (( i < ioc ))
	2214	do
	2215	(( i = i + 1 ))
	2216	if (( i == 1 ))
	2217	then
	2218	printf "\n\n >>> OUTPUT-commands:\n"
	2219	fi
	2220	printf "\n ${out_command[$i]}"
	2221	done
	2222	fi
	2223
	2224
	2225	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2226	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2227	then
	2228	antwort=dummy
	2229	printf "\n\n"
	2230	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2231	do
	2232	printf " >>> everything o.k. (y/n) ? "
	2233	read antwort
	2234	done
	2235	if [[ $antwort = n \|\| $antwort = N ]]
	2236	then
	2237	locat=user_abort; (( iec = 0 )); exit
	2238	fi
	2239	if [[ $do_batch = true ]]
	2240	then
	2241	printf " >>> batch-job will be created and submitted"
	2242	else
	2243	if [[ $local_compile = false ]]
	2244	then
	2245	printf " >>> MRUN will now continue to execute on this machine"
	2246	else
	2247	printf " >>> a test compilation will now be carried out on this machine"
	2248	fi
	2249	fi
	2250	fi
	2251
	2252
	2253
	2254
	2255	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2256	# CHENDE AKTIONEN DURCHGEFUEHRT
	2257	if [[ $do_batch = false ]]
	2258	then
	2259
	2260
	2261	# TEMPORAEREN KATALOG ERZEUGEN
	2262	mkdir -p $TEMPDIR
	2263	chmod go+rx $TEMPDIR
	2264	tmpcreate=true
	2265
	2266
	2267	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2268	# TEMPORAERES VERZEICHNIS KOPIEREN
	2269	if [[ $do_compile = true ]]
	2270	then
	2271
	2272	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2273	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2274	if [[ $localhost = nech ]]
	2275	then
	2276	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2277	if mkdir -p $TEMPDIR_COMPILE
	2278	then
	2279	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2280	printf "\n is generated as temporary directory for cross compiling\n"
	2281	else
	2282	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2283	printf "\n needed for cross compilation failed"
	2284	locat=compile
	2285	exit
	2286	fi
	2287	else
	2288	TEMPDIR_COMPILE=$TEMPDIR
	2289	fi
	2290
	2291
[82]	2292	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2293	line=""
	2294	grep "%depository_path" $config_file > tmp_mrun
	2295	while read line
	2296	do
	2297	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2298	then
	2299	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2300	then
[82]	2301	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2302	fi
[82]	2303	fi
	2304	done < tmp_mrun
[1]	2305
[82]	2306	line=""
	2307	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2308	while read line
	2309	do
	2310	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2311	then
[211]	2312	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2313	then
	2314	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2315	fi
[1]	2316	fi
[82]	2317	done < tmp_mrun
[1]	2318
[82]	2319	if [[ "$local_depository_path" = "" ]]
	2320	then
	2321	if [[ "$global_depository_path" != "" ]]
[1]	2322	then
[82]	2323	local_depository_path=$global_depository_path
[1]	2324	else
[82]	2325	printf "\n\n +++ no depository path found in configuration file"
	2326	printf "\n for local host \"$localhost\" "
	2327	printf "\n please set \"\%depository_path\" in configuration file\n"
	2328	locat=config_file; exit
[1]	2329	fi
[82]	2330	fi
	2331	eval local_depository_path=$local_depository_path
[215]	2332	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2333	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2334
[215]	2335
[82]	2336	basename=`print $mainprog \| cut -f1 -d"."`
	2337	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2338	if [[ ! -f $make_depository ]]
	2339	then
	2340	printf "\n"
	2341	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2342	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2343	else
	2344	cp $make_depository $TEMPDIR_COMPILE
[1]	2345	cd $TEMPDIR_COMPILE
[82]	2346	tar -xf $make_depository > /dev/null 2>&1
[1]	2347	cd - > /dev/null
	2348	fi
[82]	2349
	2350	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2351
	2352	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2353	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2354	# MAKEFILE EINTRAGEN
[211]	2355	# cd $TEMPDIR_COMPILE
	2356	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2357	# if [[ "$interface_file" != "" ]]
	2358	# then
	2359	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2360	# mv Makefile Makefile_old
	2361	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2362	# fi
	2363	# cd - > /dev/null
[1]	2364	else
	2365	cp $executable ${TEMPDIR}/a.out
	2366	fi
	2367
	2368
	2369	# WECHSEL IN TEMPORAEREN KATALOG
	2370	cd $TEMPDIR
	2371	printf "\n *** changed to temporary directory: $TEMPDIR"
	2372
	2373
	2374	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2375	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2376	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2377	# ERMITTELN
	2378	(( i = 0 ))
	2379	while (( i < iout ))
	2380	do
	2381	(( i = i + 1 ))
	2382	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2383	then
	2384	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2385	else
	2386	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2387	fi
	2388	done
	2389
	2390
	2391	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2392	if [[ $do_compile = true ]]
	2393	then
	2394
	2395
	2396	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2397	printf "\n\n\n *** compilation starts \n$striche\n"
	2398	printf " *** compilation with make using following options:\n"
[211]	2399	printf " make depository: $make_depository"
[82]	2400	printf " compilername: $compiler_name\n"
	2401	printf " options: $fopts\n"
	2402	printf " preprocessor-directives: $cpp_options \n"
	2403	printf " linker-options: $lopts \n"
	2404	printf " source code files: $source_list \n"
	2405
	2406	if [[ $localhost = nech ]]
[1]	2407	then
[82]	2408	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2409	cp $TEMPDIR_COMPILE/a.out .
	2410	[[ $? != 0 ]] && compile_error=true
	2411	rm -rf $TEMPDIR_COMPILE
[197]	2412	elif [[ $localhost = lcsgib ]]
	2413	then
[221]	2414	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[291]	2415	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2416	[[ ! -f a.out ]] && compile_error=true
	2417	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2418	elif [[ $localhost = lcsgih ]]
	2419	then
[221]	2420	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
	2421	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2422	[[ ! -f a.out ]] && compile_error=true
	2423	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2424	else
[118]	2425	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2426	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2427	fi
[1]	2428
	2429	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2430	then
	2431	printf "\n +++ error occured while compiling or linking"
	2432	locat=compile
[181]	2433
[182]	2434	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2435	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2436	# then
[181]	2437	exit
[197]	2438	# else
	2439	# locat=normal
	2440	# fi
[1]	2441	else
	2442	printf "$striche\n *** compilation finished \n"
	2443	fi
	2444	fi
	2445
	2446
	2447	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2448	if [[ $local_compile = true ]]
	2449	then
	2450	cd $HOME
	2451	rm -rf $TEMPDIR
	2452	locat=local_compile; exit
	2453	fi
	2454
	2455
	2456	# BEREITSTELLEN DER INPUT-DATEIEN
	2457	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2458	(( i = 0 ))
	2459	while (( i < iin ))
	2460	do
	2461	(( i = i + 1 ))
	2462	if (( i == 1 ))
	2463	then
	2464	printf "\n\n *** providing INPUT-files:\n$striche"
	2465	fi
	2466
	2467
	2468	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2469	if [[ "${transin[$i]}" = unavailable ]]
	2470	then
	2471	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2472	then
	2473	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2474	printf "\n is not available!"
	2475	else
	2476	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2477	printf "\n is not available!"
	2478	fi
	2479	continue
	2480	fi
	2481
	2482	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2483	files_for_pes=false; datentyp=file
	2484	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2485	then
	2486	files_for_pes=true; datentyp=directory
	2487	actionin[$i]=""
	2488	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2489	then
	2490	actionin[$i]=""
	2491	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2492	then
	2493	files_for_pes=true; datentyp=directory
	2494	actionin[$i]="ar"
	2495	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2496	then
	2497	actionin[$i]="ar"
	2498	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2499	then
	2500	files_for_pes=true; datentyp=directory
	2501	actionin[$i]="fl"
	2502	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2503	then
	2504	actionin[$i]="fl"
	2505	fi
	2506
	2507	if [[ $files_for_pes = true ]]
	2508	then
	2509	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2510	else
	2511	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2512	fi
	2513
	2514	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2515	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2516	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2517	# SERVER ZU HOLEN
	2518	if [[ "${actionin[$i]}" = fl ]]
	2519	then
	2520	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2521	if [[ $files_for_pes = false ]]
	2522	then
	2523	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2524	then
	2525	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2526	got_tmp[$i]=true
	2527	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2528	then
	2529	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2530	printf "\n *** trying to use backup copy in \"$WORK\" "
	2531	cp $WORK/${frelin[$i]} ${localin[$i]}
	2532	else
	2533	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2534	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2535	printf "\n *** trying to get copy from archive"
	2536	actionin[$i]=ar
	2537	fi
	2538	else
	2539	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2540	then
	2541	mkdir ${localin[$i]}
[149]	2542	cd $tmp_data_catalog/${frelin[$i]}
	2543	for file in $(ls *)
	2544	do
	2545	ln $file $TEMPDIR/${localin[$i]}
	2546	done
	2547	cd $TEMPDIR
[1]	2548	got_tmp[$i]=true
	2549	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2550	then
	2551	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2552	printf "\n *** trying to use backup copy in \"$WORK\" "
	2553	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2554	else
	2555	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2556	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2557	printf "\n *** trying to get copy from archive"
	2558	actionin[$i]=ar
	2559	fi
	2560	fi
	2561	fi
	2562
	2563
	2564	# DATEI LIEGT AUF ARCHIV-SERVER
	2565	if [[ "${actionin[$i]}" = ar ]]
	2566	then
	2567
	2568	if [[ $files_for_pes = false ]]
	2569	then
	2570	printf "\n file will be restored from archive-system ($archive_system)!"
	2571	else
	2572	printf "\n directory will be restored from archive-system ($archive_system)!"
	2573	fi
	2574
	2575	file_restored=false
	2576
	2577	if [[ $archive_system = asterix ]]
	2578	then
	2579	do_stagein=true
	2580	(( stagein_anz = 0 ))
	2581	while [[ $do_stagein = true ]]
	2582	do
	2583	if [[ $files_for_pes = false ]]
	2584	then
	2585	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2586	else
	2587	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2588	fi
	2589	cat STAGEIN_OUTPUT
	2590	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2591	then
	2592	file_restored=true
	2593	do_stagein=false
	2594	else
	2595	(( stagein_anz = stagein_anz + 1 ))
	2596	if (( stagein_anz == 10 ))
	2597	then
	2598	printf "\n +++ stagein stoped after 10 tries"
	2599	locat=stage
	2600	exit
	2601	fi
	2602	printf "\n +++ restoring from archive failed, trying again:"
	2603	sleep 900
	2604	fi
	2605	done
	2606	elif [[ $archive_system = DMF ]]
	2607	then
	2608	if [[ $files_for_pes = false ]]
	2609	then
	2610	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2611	locat=DMF
	2612	exit
	2613	else
	2614	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2615	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2616	file_restored=true
	2617	fi
	2618	elif [[ $archive_system = tivoli ]]
	2619	then
	2620	if [[ $files_for_pes = false ]]
	2621	then
	2622	if [[ $localhost = ibmh ]]
	2623	then
	2624	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2625	else
	2626	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2627	fi
	2628	else
	2629	(( inode = 0 ))
	2630	while (( inode < nodes ))
	2631	do
	2632	if [[ $localhost = ibmh ]]
	2633	then
	2634	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2635	else
	2636	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2637	fi
	2638	(( inode = inode + 1 ))
	2639	done
	2640	fi
	2641	file_restored=true
	2642	elif [[ $archive_system = ut ]]
	2643	then
	2644	if [[ $files_for_pes = false ]]
	2645	then
	2646	cp $UT/${frelin[$i]} .
	2647	else
	2648	(( inode = 0 ))
	2649	while (( inode < nodes ))
	2650	do
	2651	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2652	(( inode = inode + 1 ))
	2653	done
	2654	fi
	2655	file_restored=true
	2656	else
	2657	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2658	locat=rearchive
	2659	exit
	2660	fi
	2661
	2662	if [[ $file_restored = true ]]
	2663	then
	2664
	2665	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2666	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2667	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2668	if [[ $files_for_pes = false ]]
	2669	then
	2670	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2671	else
	2672	mkdir $tmp_data_catalog/${frelin[$i]}
	2673	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2674	fi
	2675	got_tmp[$i]=true
	2676
	2677	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2678	mv ${frelin[$i]} ${localin[$i]}
	2679
	2680	fi
	2681	fi
	2682
	2683
	2684	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2685	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2686	then
	2687
	2688	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2689	then
	2690
	2691	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2692	printf "\n file will be provided for $numprocs processors"
	2693	mkdir ${localin[$i]}
	2694	ival=$numprocs
	2695	(( ii = 0 ))
	2696	while (( ii <= ival-1 ))
	2697	do
	2698	if (( ii < 10 ))
	2699	then
	2700	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2701	elif (( ii < 100 ))
	2702	then
	2703	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2704	elif (( ii < 1000 ))
	2705	then
	2706	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2707	else
	2708	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2709	fi
	2710	(( ii = ii + 1 ))
	2711	done
	2712
	2713	else
	2714
	2715	if [[ $files_for_pes = true ]]
	2716	then
	2717
	2718	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2719	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2720	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2721	# PER MOVE UMBENANNT WERDEN
	2722	printf "\n providing $numprocs files for the respective processors"
	2723	mkdir ${localin[$i]}
[183]	2724	if [[ $link_local_input = true ]]
	2725	then
	2726	printf " using ln -f\n"
	2727	cd ${absnamein[$i]}
	2728	for file in $(ls *)
	2729	do
	2730	ln -f $file ${localin[$i]}
	2731	done
	2732	cd $TEMPDIR
	2733	fi
	2734	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2735	if [[ ! -f "${localin[$i]}/_0000" ]]
	2736	then
	2737	if [[ $link_local_input = true ]]
	2738	then
	2739	printf " ln failed for .../_0000, using cp...\n"
	2740	fi
	2741	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2742	fi
[1]	2743
	2744	else
	2745	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2746	if [[ $link_local_input = true ]]
	2747	then
	2748	printf " using ln -f\n"
	2749	ln -f ${absnamein[$i]} ${localin[$i]}
	2750	fi
	2751	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2752	if [[ ! -f "${localin[$i]}" ]]
	2753	then
	2754	if [[ $link_local_input = true ]]
	2755	then
	2756	printf " ln failed, using cp...\n"
	2757	fi
	2758	cp ${absnamein[$i]} ${localin[$i]}
	2759	fi
[1]	2760	fi
	2761	fi
	2762	fi
	2763
	2764	done
	2765	if (( i != 0 ))
	2766	then
	2767	printf "\n$striche\n *** all INPUT-files provided \n"
	2768	fi
	2769
	2770
	2771	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2772	(( i = 0 ))
	2773	while (( i < iic ))
	2774	do
	2775	(( i = i + 1 ))
	2776	if (( i == 1 ))
	2777	then
	2778	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2779	fi
	2780	printf "\n >>> ${in_command[$i]}"
	2781	eval ${in_command[$i]}
	2782	if (( i == iic ))
	2783	then
	2784	printf "\n$striche\n"
	2785	fi
	2786	done
	2787
	2788
	2789	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2790	cpurest=${cpumax}.
	2791
	2792
[260]	2793	# START DVR STREAMING SERVER
	2794	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2795	then
	2796	if [[ "$dvr_server" != "" ]]
	2797	then
	2798
	2799	printf "\n\n *** preparing the dvr streaming server configuration file"
	2800
	2801	# Check, if a dvr server is already running
	2802	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2803	if [[ "$running_dvrserver_id" != "" ]]
	2804	then
	2805
[261]	2806	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2807	printf "\n This server is used instead starting a new one!"
[261]	2808	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2809
	2810	else
	2811
	2812	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2813	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2814	then
	2815	cp ${PALM_BIN}/.dvrserver.config .
	2816
	2817	# Entering the BASEDIR, UID and GID into this file
	2818	user_id=`id -u`
	2819	group_id=`id -g`
	2820	# & is needed as seperator, because TEMPDIR contains /
	2821	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2822	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2823	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2824	mv .dvrserver.3 .dvrserver.config
	2825	rm .dvrserver.1 .dvrserver.2
	2826
	2827	# Start dvr server in background, get his id and print on terminal
	2828	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2829	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2830	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2831	local_dvrserver_running=.TRUE.
	2832	else
	2833	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2834	printf "\n \"$PALM_BIN\" "
	2835	locat=dvr
	2836	exit
	2837	fi
	2838
	2839	fi
	2840
	2841	else
	2842	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2843	fi
	2844	fi
	2845
	2846
	2847	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2848	# LESEN VON PALM)
	2849	cat > ENVPAR << %%END%%
	2850	&envpar run_identifier = '$fname', host = '$localhost',
	2851	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2852	maximum_cpu_time_allowed = ${cpumax}.,
	2853	revision = '$global_revision',
	2854	local_dvrserver_running = $local_dvrserver_running /
	2855
	2856	%%END%%
	2857
	2858
[1]	2859	# PROGRAMMSTART
	2860	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2861	PATH=$PATH:$TEMPDIR
	2862
	2863	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2864	then
	2865	if [[ "$ENVIRONMENT" = BATCH ]]
	2866	then
[211]	2867	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2868	then
	2869	printf "\n +++ debug is allowed in interactive mode only"
	2870	locat=debug
	2871	exit
	2872	fi
[1]	2873	fi
[5]	2874	if [[ $localhost = decalpha ]]
[1]	2875	then
	2876	dxladebug a.out
	2877	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2878	then
	2879
	2880	# SETUP THE IBM MPI ENVIRONMENT
	2881	export MP_SHARED_MEMORY=yes
	2882	export AIXTHREADS_SCOPE=S
	2883	export OMP_NUM_THREADS=$threads_per_task
	2884	export AUTHSTATE=files
	2885	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2886
	2887	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2888	export MP_ADAPTER_USE=shared
	2889	export MP_CPU_USE=multiple
	2890	export MP_TIMEOUT=1200
	2891
	2892	unset MP_TASK_AFFINITY
	2893
	2894	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2895	#(( ii = 1 ))
	2896	#while (( ii <= $numprocs ))
	2897	#do
	2898	# echo $localhost_realname >> hostfile
	2899	# (( ii = ii + 1 ))
	2900	#done
	2901	#export MP_HOSTFILE=hostfile
	2902
	2903	if [[ "$LOADLBATCH" = yes ]]
	2904	then
	2905	totalview poe a.out $ROPTS
	2906	else
	2907	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2908	export TVDSVRLAUNCHCMD=ssh
	2909	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2910	fi
[211]	2911	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2912	then
	2913	# CURRENTLY NO DEBUGGER ON LCSGI
	2914	if [[ $run_coupled_model = true ]]
	2915	then
	2916	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2917	locat=debug
	2918	exit
[223]	2919	else
	2920	echo "no_coupling" > runfile_atmos
[211]	2921	fi
	2922	(( ii = $numprocs / $threads_per_task ))
	2923	export OMP_NUM_THREADS=$threads_per_task
	2924	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2925	if [[ $threads_per_task != 1 ]]
	2926	then
	2927	printf "\n threads per task: $threads_per_task"
	2928	fi
	2929	printf "\n\n"
[223]	2930	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2931	then
	2932	# export MPI_LAUNCH_TIMEOUT=360
	2933	if [[ "$totalview" = true ]]
	2934	then
	2935	printf "\n running totalview debugger"
	2936	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2937	else
	2938	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2939	fi
	2940	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2941	then
	2942	# ulimit -s 300000 # A too large stack size causes problems
	2943	# export MV2_NUM_PORTS=2
	2944	# export MV2_CPU_MAPPING=0:1:2:3
	2945	mpiexec ./a.out $ROPTS < runfile_atmos
	2946	fi
[1]	2947	else
	2948	printf "\n +++ no debug available on \"$localhost\" "
	2949	printf "\n or not implemented in mrun so far"
	2950	locat=debug
	2951	exit
	2952	fi
	2953	else
	2954	if [[ -n $numprocs ]]
	2955	then
	2956
	2957	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2958	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2959	then
	2960	# SETUP THE IBM MPI ENVIRONMENT
	2961	export MP_SHARED_MEMORY=yes
	2962	export AIXTHREAD_SCOPE=S
	2963	export OMP_NUM_THREADS=$threads_per_task
	2964	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2965	export AUTHSTATE=files
	2966	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2967	# export MP_PRINTENV=yes
	2968
	2969	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2970	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2971	export MP_WAIT_MODE=poll
	2972	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2973	# export MP_EAGER_LIMIT=65535
	2974
	2975	# # TESTWEISE FUER TURBOMPI (JAN 05)
	2976	# export MPJ_MTAB=128
	2977	# export MPJ_ALLTOALL=1
	2978	# export MPJ_ALLTOALLV=1
	2979
	2980	if [[ "$LOADLBATCH" = yes ]]
	2981	then
	2982	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2983	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	2984	then
[102]	2985	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	2986	else
[102]	2987	poe ./a.out $ROPTS
[1]	2988	fi
	2989	else
	2990	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	2991	then
[102]	2992	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	2993	elif [[ $localhost = ibmy ]]
	2994	then
	2995	if [[ -f $hostfile ]]
	2996	then
	2997	cp $hostfile hostfile
	2998	else
	2999	(( ii = 1 ))
	3000	while (( ii <= $numprocs ))
	3001	do
	3002	echo $localhost_realname >> hostfile
	3003	(( ii = ii + 1 ))
	3004	done
	3005	fi
	3006	export MP_HOSTFILE=hostfile
[102]	3007	./a.out -procs $tasks_per_node $ROPTS
[1]	3008	else
	3009	if [[ "$host_file" = "" ]]
	3010	then
	3011	printf "\n +++ no hostfile given in configuration file"
	3012	locat=config_file
	3013	exit
	3014	else
	3015	eval host_file=$host_file
	3016	fi
	3017	export MP_HOSTFILE=$host_file
[102]	3018	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3019	fi
	3020	fi
[251]	3021	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3022	then
	3023	(( ii = nodes ))
	3024	if [[ $ii = 1 ]]
	3025	then
	3026	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3027	export MPIPROGINF=YES
[61]	3028	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3029	echo "*** execution on single node with mpirun"
[102]	3030	mpirun -np $numprocs ./a.out $ROPTS
[1]	3031	else
	3032	(( i = 0 ))
	3033	while (( i < ii ))
	3034	do
	3035	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3036	(( i = i + 1 ))
	3037	done
	3038
	3039	echo "#!/bin/sh" > mpi_exec_shell
	3040	echo " " >> mpi_exec_shell
	3041	echo "set -u" >> mpi_exec_shell
	3042	echo "F_ERRCNT=0" >> mpi_exec_shell
	3043	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3044	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3045	echo "cpurest=$cpurest" >> mpi_exec_shell
	3046	echo "fname=$fname" >> mpi_exec_shell
	3047	echo "localhost=$localhost" >> mpi_exec_shell
	3048	echo "return_addres=$return_addres" >> mpi_exec_shell
	3049	echo "return_username=$return_username" >> mpi_exec_shell
	3050	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3051	echo "write_binary=$write_binary" >> mpi_exec_shell
	3052	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3053	echo " " >> mpi_exec_shell
	3054	echo "export F_ERRCNT" >> mpi_exec_shell
	3055	echo "export MPIPROGINV" >> mpi_exec_shell
	3056	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3057	echo "export cpurest" >> mpi_exec_shell
	3058	echo "export fname" >> mpi_exec_shell
	3059	echo "export localhost" >> mpi_exec_shell
	3060	echo "export return_addres" >> mpi_exec_shell
	3061	echo "export return_username" >> mpi_exec_shell
	3062	echo "export tasks_per_node" >> mpi_exec_shell
	3063	echo "export write_binary" >> mpi_exec_shell
	3064	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3065	echo " " >> mpi_exec_shell
[102]	3066	echo "exec ./a.out" >> mpi_exec_shell
[1]	3067
	3068	chmod u+x mpi_exec_shell
	3069	export MPIPROGINF=YES
	3070	mpirun -f multinode_config &
	3071	wait
	3072
	3073	fi
[82]	3074	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3075	then
	3076
	3077	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3078	# DOES NOT EXIST
[179]	3079	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3080	then
[179]	3081	if [[ -f $hostfile ]]
	3082	then
	3083	cp $hostfile hostfile
	3084	else
	3085	(( ii = 1 ))
	3086	while (( ii <= $numprocs / $threads_per_task ))
	3087	do
	3088	echo $localhost_realname >> hostfile
	3089	(( ii = ii + 1 ))
	3090	done
	3091	fi
	3092	eval zeile=\"`head -n $ii hostfile`\"
	3093	printf "\n *** running on: $zeile"
[1]	3094	fi
[179]	3095
[1]	3096	(( ii = $numprocs / $threads_per_task ))
	3097	export OMP_NUM_THREADS=$threads_per_task
[246]	3098	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3099	if [[ $threads_per_task != 1 ]]
	3100	then
	3101	printf "\n threads per task: $threads_per_task"
	3102	fi
[102]	3103	if [[ $run_coupled_model = false ]]
[1]	3104	then
[291]	3105	if [[ "$ocean_file_appendix" = true ]]
	3106	then
	3107	echo "precursor_ocean" > runfile_atmos
	3108	else
	3109	echo "precursor_atmos" > runfile_atmos
	3110	fi
[102]	3111	printf "\n\n"
[179]	3112	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3113	then
[221]	3114	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3115	then
	3116	# export MPI_LAUNCH_TIMEOUT=360
[223]	3117	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3118	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3119	then
	3120	# ulimit -s 300000 # A too large stack size causes problems
	3121	# export MV2_NUM_PORTS=2
	3122	# export MV2_CPU_MAPPING=0:1:2:3
[223]	3123	mpiexec ./a.out $ROPTS < runfile_atmos
[221]	3124	fi
[179]	3125	elif [[ $host = lcxt4 ]]
	3126	then
[223]	3127	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3128	else
[223]	3129	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3130	fi
[1]	3131	else
[164]	3132
[206]	3133	# currently there is no full MPI-2 support on ICE and XT4
	3134	(( iia = $numprocs_atmos / $threads_per_task ))
	3135	(( iio = $numprocs_ocean / $threads_per_task ))
	3136	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3137	printf "\n using $coupled_mode coupling"
[102]	3138	printf "\n\n"
[164]	3139
[206]	3140	if [[ $coupled_mode = "mpi2" ]]
[164]	3141	then
[206]	3142	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3143	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3144	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3145	then
[197]	3146
[221]	3147	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3148	then
	3149	# export MPI_LAUNCH_TIMEOUT=360
	3150	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3151	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3152	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3153	then
	3154	# ulimit -s 300000 # A too large stack size causes problems
	3155	# export MV2_NUM_PORTS=2
	3156	# export MV2_CPU_MAPPING=0:1:2:3
	3157	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3158	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3159	fi
[197]	3160
[206]	3161	elif [[ $host = lcxt4 ]]
	3162	then
[197]	3163
[206]	3164	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3165	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3166
	3167	else
	3168	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3169	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3170	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3171	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3172	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3173	fi
	3174	wait
	3175
[164]	3176	else
	3177
[206]	3178	echo "coupled_run $iia $iio" > runfile_atmos
	3179	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3180	then
	3181
[221]	3182	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3183	then
	3184	# export MPI_LAUNCH_TIMEOUT=360
	3185	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3186	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3187	then
	3188	# ulimit -s 300000 # A too large stack size causes problems
	3189	# export MV2_NUM_PORTS=2
	3190	# export MV2_CPU_MAPPING=0:1:2:3
	3191	mpiexec ./a.out $ROPTS < runfile_atmos
	3192	fi
[206]	3193
	3194	elif [[ $host = lcxt4 ]]
	3195	then
	3196
	3197	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3198
	3199	fi
	3200	wait
[164]	3201	fi
[102]	3202
	3203	# if [[ $scirocco = true ]]
	3204	# then
	3205	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3206	# else
	3207	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3208	# fi
[206]	3209	fi
[1]	3210	elif [[ $host = decalpha ]]
	3211	then
[102]	3212	dmpirun -np $numprocs a.out $ROPTS
[1]	3213	elif [[ $host = lctit ]]
	3214	then
	3215	export runfile=runfile.$kennung
	3216
	3217	echo "cd $PWD" > $runfile
	3218	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3219	echo "export cpurest=$cpurest" >> $runfile
	3220	echo "export fname=$fname" >> $runfile
	3221	echo "export localhost=$localhost" >> $runfile
	3222	echo "export return_addres=$return_addres" >> $runfile
	3223	echo "export return_username=$return_username" >> $runfile
	3224	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3225	echo "export write_binary=$write_binary" >> $runfile
	3226	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3227	echo "./a.out" >> $runfile
	3228	chmod u+x $runfile
	3229
	3230	if [[ "$QUEUE" = interactive ]]
	3231	then
[102]	3232	mpirun -np $numprocs a.out $ROPTS
[1]	3233	else
[127]	3234	(( mem_tsubame = $memory / 1024.0 ))
	3235	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3236	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3237	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3238	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3239	fi
	3240
	3241	rm $runfile
	3242	else
[102]	3243	mpprun -n $numprocs a.out $ROPTS
[1]	3244	fi
	3245	[[ $? != 0 ]] && execution_error=true
	3246
	3247
	3248	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3249	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3250	then
	3251	apprentice
	3252	fi
	3253	else
[102]	3254	a.out $ROPTS
[1]	3255	fi
	3256	fi
	3257	if [[ $? != 0 \|\| $execution_error = true ]]
	3258	then
	3259
	3260	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3261	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3262	printf "\n +++ runtime error occured"
	3263	locat=execution
	3264	exit
	3265	else
[102]	3266	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3267	printf "\n$striche\n *** execution finished \n"
[260]	3268
[261]	3269	# Stop the dvr streaming server and process the dvr output in order
	3270	# to create dvrs- and html-files containing all streams
[260]	3271	if [[ "$dvrserver_id" != "" ]]
	3272	then
	3273	kill $dvrserver_id
	3274	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3275
[262]	3276	# If there is a directory, data have been output by the
	3277	# streaming server. Otherwise, user has chosen dvrp_output=local
	3278	if [[ -d DATA_DVR ]]
	3279	then
[261]	3280
[262]	3281	# Add the current dvr configuration file to the dvr output
	3282	# directory
	3283	cp .dvrserver.config DATA_DVR
	3284
	3285	# Process the dvr output (option -s for also generating
	3286	# sequence mode data)
	3287	process_dvr_output -d DATA_DVR -f $fname -s
	3288
	3289	else
	3290
	3291	# Process the local output
	3292	process_dvr_output -l -d DATA_DVR -f $fname
	3293
	3294	fi
	3295
	3296	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3297	then
	3298
	3299	# Process dvr output generated in local mode (dvrp_output=local)
	3300	process_dvr_output -l -d DATA_DVR -f $fname
	3301
[260]	3302	fi
[1]	3303	fi
	3304
	3305
	3306
	3307	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3308	(( i = 0 ))
	3309	while (( i < ioc ))
	3310	do
	3311	(( i = i + 1 ))
	3312	if (( i == 1 ))
	3313	then
	3314	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3315	fi
	3316	printf "\n >>> ${out_command[$i]}"
	3317	eval ${out_command[$i]}
	3318	if (( i == ioc ))
	3319	then
	3320	printf "\n$striche\n"
	3321	fi
	3322	done
	3323
	3324
	3325	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3326	if [[ $do_trace = true ]]
	3327	then
	3328	printf "\n\n"
	3329	ls -al
	3330	fi
	3331
	3332
	3333
	3334	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3335	(( i = 0 ))
	3336	while (( i < iout ))
	3337	do
	3338	(( i = i + 1 ))
	3339	if (( i == 1 ))
	3340	then
	3341	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3342	fi
	3343
	3344	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3345	files_for_pes=false; filetyp=file
	3346	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3347	then
	3348	files_for_pes=true; filetyp=directory
	3349	actionout[$i]=""
	3350	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3351	then
	3352	actionout[$i]=""
	3353	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3354	then
	3355	files_for_pes=true; filetyp=directory
	3356	actionout[$i]="ar"
	3357	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3358	then
	3359	actionout[$i]="ar"
	3360	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3361	then
	3362	files_for_pes=true; filetyp=directory
	3363	actionout[$i]="fl"
	3364	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3365	then
	3366	actionout[$i]="fl"
	3367	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3368	then
	3369	files_for_pes=true; filetyp=directory
	3370	actionout[$i]="tr"
	3371	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3372	then
	3373	actionout[$i]="tr"
	3374	fi
	3375
	3376	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3377	then
	3378	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3379	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3380	then
	3381	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3382	else
	3383
	3384
	3385	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3386	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3387	# REMOTE-RECHNUNGEN
	3388	if [[ "${actionout[$i]}" = tr ]]
	3389	then
	3390	if [[ $localhost != $fromhost ]]
	3391	then
	3392	if [[ $files_for_pes = false ]]
	3393	then
	3394	cps=""
	3395	cst=""
	3396	else
	3397	cps=-c
	3398	cst="/"
	3399	fi
	3400	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3401	then
	3402
	3403	# TRANSFER IN EIGENSTAENDIGEM JOB
	3404	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3405	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3406	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3407	if [[ $files_for_pes = false ]]
	3408	then
	3409	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3410	else
	3411	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3412	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3413	fi
	3414
	3415	echo "set -x" > transfer_${localout[$i]}
	3416	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3417
	3418	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3419	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3420	printf "\n or higher cycle\n"
	3421	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3422
[1]	3423	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3424
	3425	if [[ $localhost = nech ]]
	3426	then
[82]	3427	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3428	else
	3429	if [[ "$LOGNAME" = b323013 ]]
	3430	then
[164]	3431	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3432	else
[164]	3433	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3434	fi
	3435	fi
	3436
	3437	else
	3438
	3439	# TRANSFER INNERHALB DIESES JOBS
	3440	transfer_failed=false
[82]	3441	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3442	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3443	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3444	[[ $? != 0 ]] && transfer_failed=true
[1]	3445
	3446	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3447	# LOKALER MASCHINE ANLEGEN
	3448	if [[ $transfer_failed = true ]]
	3449	then
	3450	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3451	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3452
	3453	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3454	# ANLEGEN.
	3455	eval local_catalog=${pathout[$i]}
	3456	if [[ ! -d $local_catalog ]]
	3457	then
	3458	printf " *** local directory does not exist. Trying to create:\n"
	3459	printf " $local_catalog \n"
	3460	mkdir -p $local_catalog
	3461	fi
	3462	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3463	transfer_problems=true
	3464	fi
	3465	fi
	3466	else
	3467
	3468	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3469	actionout[$i]=""
	3470	fi
	3471	fi
	3472
	3473
	3474	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3475	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3476	# REMOTE-RECHNUNGEN
	3477	if [[ "${actionout[$i]}" = tra ]]
	3478	then
	3479	if [[ $localhost != $fromhost ]]
	3480	then
	3481	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3482	then
	3483
	3484	# TRANSFER IN EIGENSTAENDIGEM JOB
	3485	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3486	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3487	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3488	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3489
	3490	echo "set -x" > transfer_${localout[$i]}
	3491	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3492
	3493	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3494	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3495	printf "\n or higher cycle\n"
	3496	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3497
[1]	3498	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3499
	3500	if [[ $localhost = nech ]]
	3501	then
[82]	3502	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3503	else
	3504	if [[ $LOGNAME = b323013 ]]
	3505	then
[164]	3506	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3507	else
[164]	3508	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3509	fi
	3510	fi
	3511
	3512	else
	3513
	3514	# TRANSFER INNERHALB DIESES JOBS
	3515	transfer_failed=false
[82]	3516	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3517	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3518	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3519	[[ $? != 0 ]] && transfer_failed=true
[1]	3520
	3521	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3522	# LOKALER MASCHINE ANLEGEN
	3523	if [[ $transfer_failed = true ]]
	3524	then
	3525	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3526	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3527
	3528	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3529	# ANLEGEN
	3530	eval local_catalog=${pathout[$i]}
	3531	if [[ ! -d $local_catalog ]]
	3532	then
	3533	printf " *** local directory does not exist. Trying to create:\n"
	3534	printf " $local_catalog \n"
	3535	mkdir -p $local_catalog
	3536	fi
	3537
	3538	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3539	transfer_problems=true
	3540	fi
	3541	fi
	3542	else
	3543
	3544	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3545	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3546	actionout[$i]=a
	3547	fi
	3548	fi
	3549
	3550
	3551	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3552	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3553	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3554	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3555	if [[ "${actionout[$i]}" = fl ]]
	3556	then
	3557	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3558	chmod g+rx $tmp_data_catalog
	3559	if [[ $files_for_pes = false ]]
	3560	then
	3561	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3562	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3563	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3564	else
	3565	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3566	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3567	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3568	cd ${localout[$i]}
	3569	for file in $(ls *)
	3570	do
	3571	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3572	done
	3573	cd $TEMPDIR
[1]	3574	fi
	3575
	3576
	3577	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3578	if [[ $store_on_archive_system = true ]]
	3579	then
	3580
	3581	if [[ $archive_system = asterix ]]
	3582	then
	3583	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3584	if [[ $files_for_pes = false ]]
	3585	then
	3586	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3587	else
	3588	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3589	fi
	3590	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3591	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3592	echo "then" >> archive_${frelout[$i]}
	3593	echo " do_stageout=false" >> archive_${frelout[$i]}
	3594	echo "else" >> archive_${frelout[$i]}
	3595	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3596	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3597	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3598	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3599	if [[ $files_for_pes = false ]]
	3600	then
	3601	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3602	else
	3603	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3604	fi
	3605	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3606	echo "fi" >> archive_${frelout[$i]}
	3607	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3608	elif [[ $archive_system = DMF ]]
	3609	then
	3610	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3611	if [[ $files_for_pes = false ]]
	3612	then
	3613	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3614	locat=DMF
	3615	exit
	3616	else
	3617	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3618	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3619	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3620	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3621	fi
	3622	elif [[ $archive_system = tivoli ]]
	3623	then
	3624	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3625	if [[ $files_for_pes = false ]]
	3626	then
	3627	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3628	echo "set -x" >> archive_${frelout[$i]}
	3629	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3630	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3631	else
	3632
	3633	echo "set -x" >> archive_${frelout[$i]}
	3634	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3635	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3636	cd $tmp_data_catalog
	3637	all_files=`ls -1 ${frelout[$i]}/*`
	3638	cd - > /dev/null
	3639	(( inode = 0 ))
	3640	(( tp1 = tasks_per_node + 1 ))
	3641	while (( inode < nodes ))
	3642	do
	3643	# echo "*** all_files = \"$all_files\" "
	3644	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3645	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3646	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3647	# echo "*** files = \"$files\" "
	3648	# echo "*** all_files = \"$all_files\" "
	3649	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3650	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3651	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3652	(( inode = inode + 1 ))
	3653	done
	3654	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3655	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3656	fi
	3657	elif [[ $archive_system = ut ]]
	3658	then
	3659	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3660	if [[ $files_for_pes = false ]]
	3661	then
	3662	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3663	echo "set -x" >> archive_${frelout[$i]}
	3664	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3665	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3666	else
	3667
	3668	echo "set -x" >> archive_${frelout[$i]}
	3669	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3670	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3671	cd $tmp_data_catalog
	3672	all_files=`ls -1 ${frelout[$i]}/*`
	3673	cd - > /dev/null
	3674	(( inode = 0 ))
	3675	(( tp1 = tasks_per_node + 1 ))
	3676	while (( inode < nodes ))
	3677	do
	3678	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3679	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3680	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3681	(( inode = inode + 1 ))
	3682	done
	3683	fi
	3684	elif [[ $archive_system = none ]]
	3685	then
	3686	printf " +++ archiving on $localhost not available!\n"
	3687	fi
	3688
	3689	if [[ $archive_system != none ]]
	3690	then
	3691	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3692	then
[164]	3693	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3694	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3695	elif [[ $localhost = nech ]]
	3696	then
[82]	3697	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3698	fi
	3699	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3700	fi
	3701	else
	3702	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3703	fi
	3704
	3705
	3706	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3707	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3708	if [[ $files_for_pes = false ]]
	3709	then
	3710	cat /dev/null > ${pathout[$i]}
	3711	else
	3712	mkdir -p ${pathout[$i]}
	3713	fi
	3714
	3715	fi
	3716
	3717
	3718	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3719	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3720	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3721	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3722	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3723	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3724	if [[ "${actionout[$i]}" = ar ]]
	3725	then
	3726	if [[ $files_for_pes = false ]]
	3727	then
	3728	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3729	printf "\n ${pathout[$i]}"
	3730	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3731	else
	3732	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3733	printf "\n ${pathout[$i]}"
	3734	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3735	fi
	3736	mv ${localout[$i]} ${frelout[$i]}
	3737
	3738	file_saved=false
	3739
	3740	if [[ $archive_system = asterix ]]
	3741	then
	3742	do_stageout=true
	3743	(( stageout_anz = 0 ))
	3744	while [[ $do_stageout = true ]]
	3745	do
	3746	if [[ $files_for_pes = false ]]
	3747	then
	3748	stageout ${frelout[$i]} > STAGE_OUTPUT
	3749	else
	3750	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3751	fi
	3752	cat STAGE_OUTPUT
	3753	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3754	then
	3755	file_saved=true
	3756	do_stageout=false
	3757	else
	3758	if [[ $files_for_pes = false ]]
	3759	then
	3760	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3761	else
	3762	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3763	fi
	3764	(( stageout_anz = stageout_anz + 1 ))
	3765	if (( stageout_anz == 10 ))
	3766	then
	3767	printf "\n +++ stoped after 10 unsuccessful tries!"
	3768	archive_save=false
	3769	do_stageout=false
	3770	else
	3771	printf "\n *** new try to store on archive after 15 min:"
	3772	sleep 900
	3773	fi
	3774	fi
	3775	done
	3776	elif [[ $archive_system = DMF ]]
	3777	then
	3778	if [[ $files_for_pes = false ]]
	3779	then
	3780	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3781	locat=DMF
	3782	exit
	3783	else
	3784	rm -rf $ARCHIVE/${frelout[$i]}
	3785	cp -r ${frelout[$i]} $ARCHIVE
	3786	fi
	3787	file_saved=true
	3788	elif [[ $archive_system = tivoli ]]
	3789	then
	3790	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3791	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3792	# GELEGT WERDEN
	3793	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3794	chmod g+rx $tmp_data_catalog
	3795	if [[ $files_for_pes = false ]]
	3796	then
	3797	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3798	else
	3799	mkdir $tmp_data_catalog/${frelout[$i]}
	3800	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3801	fi
	3802
	3803	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3804	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3805	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3806	if [[ $files_for_pes = false ]]
	3807	then
	3808	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3809	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3810	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3811	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3812	else
	3813	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3814	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3815	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3816	fi
	3817
[164]	3818	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3819	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3820	file_saved=true
	3821
	3822	elif [[ $archive_system = ut ]]
	3823	then
	3824	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3825	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3826	# GELEGT WERDEN
	3827	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3828	chmod g+rx $tmp_data_catalog
	3829	if [[ $files_for_pes = false ]]
	3830	then
	3831	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3832	else
	3833	mkdir $tmp_data_catalog/${frelout[$i]}
	3834	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3835	fi
	3836
	3837	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3838	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3839	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3840	if [[ $files_for_pes = false ]]
	3841	then
	3842	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3843	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3844	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3845	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3846	else
	3847	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3848	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3849	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3850	fi
	3851
[82]	3852	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3853	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3854	file_saved=true
	3855
	3856	else
	3857	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3858	archive_save=false
	3859	fi
	3860	if [[ $file_saved = true ]]
	3861	then
	3862	if [[ $files_for_pes = false ]]
	3863	then
	3864	cat /dev/null > ${pathout[$i]}
	3865	else
	3866	mkdir -p ${pathout[$i]}
	3867	fi
	3868	fi
	3869	fi
	3870
	3871	# APPEND AUF LOKALER MASCHINE
	3872	if [[ "${actionout[$i]}" = "a" ]]
	3873	then
	3874	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3875	cat ${localout[$i]} >> ${pathout[$i]}
	3876	fi
	3877
	3878	# KOPIEREN AUF LOKALER MASCHINE
	3879	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3880	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3881	then
	3882
	3883	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3884	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3885	then
	3886	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3887	if [[ $link_local_output = true ]]
	3888	then
	3889	printf " using ln -f\n"
	3890	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3891	fi
	3892	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3893	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3894	then
	3895	if [[ $link_local_output = true ]]
	3896	then
	3897	printf " ln failed, using cp...\n"
	3898	fi
	3899	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3900	fi
[1]	3901	else
	3902	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3903	if [[ $link_local_output = true ]]
	3904	then
	3905	printf " using ln -f\n"
	3906	ln -f ${localout[$i]} ${pathout[$i]}
	3907	fi
	3908	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3909	if [[ ! -f "${pathout[$i]}" ]]
	3910	then
	3911	if [[ $link_local_output = true ]]
	3912	then
	3913	printf " ln failed, using cp...\n"
	3914	fi
	3915	cp ${localout[$i]} ${pathout[$i]}
	3916	fi
[1]	3917	fi
	3918
	3919	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3920	then
	3921
	3922	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3923	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3924	# WIRD DANN KOPIERT
	3925	# PER MOVE UMBENANNT WERDEN
	3926	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3927	if [[ $link_local_output = true ]]
	3928	then
	3929	printf " using ln -f\n"
	3930	mkdir ${pathout[$i]}
	3931	cd ${localout[$i]}
	3932	for file in $(ls *)
	3933	do
	3934	ln -f $file ${pathout[$i]}
	3935	done
	3936	cd $TEMPDIR
	3937	fi
	3938	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	3939	if [[ ! -f "${pathout[$i]}/_0000" ]]
	3940	then
	3941	if [[ $link_local_output = true ]]
	3942	then
	3943	printf " ln failed for .../_0000, using cp...\n"
	3944	fi
	3945	cp -r ${localout[$i]} ${pathout[$i]}
	3946	fi
[1]	3947
	3948	fi
	3949	fi
	3950	done
	3951	if (( i != 0 ))
	3952	then
	3953	if [[ $transfer_problems = true ]]
	3954	then
	3955	printf "\n$striche\n *** OUTPUT-files saved"
	3956	printf "\n +++ WARNING: some data transfers failed! \n"
	3957	else
	3958	printf "\n$striche\n *** all OUTPUT-files saved \n"
	3959	fi
	3960	fi
	3961
	3962
	3963	# EVENTUELL FOLGEJOB STARTEN
	3964	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	3965	if [[ -f CONTINUE_RUN ]]
	3966	then
	3967
	3968	if [[ $archive_save = true ]]
	3969	then
	3970
	3971	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	3972	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	3973	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	3974	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	3975	# HANDEN
	3976	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	3977	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	3978	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	3979	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	3980	then
	3981	mc=`echo $mc \| sed 's/#/f/g'`
	3982	fi
	3983
	3984
	3985	# JOB STARTEN
	3986	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	3987	echo " $mc"
	3988	printf "\n$striche\n"
	3989	if [[ $localhost != $fromhost ]]
	3990	then
	3991
[204]	3992	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	3993	then
	3994	echo "*** ssh will be used to initiate restart-runs!"
	3995	echo " return_addres=\"$return_addres\" "
	3996	echo " return_username=\"$return_username\" "
	3997	if [[ $return_addres = 172.20.25.41 ]]
	3998	then
	3999	# WORKAROUND AUF SCIROCCO AM TIT
[33]	4000	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	4001	else
[33]	4002	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4003	fi
	4004	else
	4005	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4006	locat=restart; exit
	4007	fi
	4008
	4009	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4010	# DER AKTUELLE JOB ENDET
	4011	sleep 30
	4012
	4013	else
	4014
	4015	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4016	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4017	cd $LOCAL_PWD
[108]	4018	if [[ $localhost = lcfimm ]]
	4019	then
	4020	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4021	else
	4022	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4023	fi
[1]	4024	cd - > /dev/null
	4025	fi
	4026	printf "\n$striche\n *** restart-run initiated \n"
	4027
	4028
	4029	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4030	# GEHOLT WORDEN SIND, LOESCHEN
	4031	(( i = 0 ))
	4032	while (( i < iin ))
	4033	do
	4034	(( i = i + 1 ))
	4035	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4036	then
	4037	rm -r $tmp_data_catalog/${frelin[$i]}
	4038	fi
	4039	done
	4040
	4041	else
	4042
	4043	printf "\n +++ no restart-run possible, since errors occured"
	4044	printf "\n during the archive process"
	4045	fi
	4046
	4047	fi
	4048
	4049
	4050
	4051	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
	4052	if [[ "$email_notification" != "" ]]
	4053	then
	4054
	4055	if [[ $localhost != $fromhost ]]
	4056	then
	4057	if [[ -f CONTINUE_RUN ]]
	4058	then
	4059	echo "PALM restart run necessary" > email_text
	4060	echo "description header of actual run:" >> email_text
	4061	cat CONTINUE_RUN >> email_text
	4062	echo "mrun-command to restart:" >> email_text
	4063	echo "$mc" >> email_text
	4064	else
	4065	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4066	fi
	4067	mail $email_notification < email_text
	4068	printf "\n *** email notification sent to \"$email_notification\" "
	4069	fi
	4070	fi
	4071
	4072
	4073
	4074	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4075	cd $HOME
	4076	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4077
	4078	else
	4079
	4080
	4081	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4082	# CHENDE AKTIONEN DURCHGEFUEHRT
	4083
	4084	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4085	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4086	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4087	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4088	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4089	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4090	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4091	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4092	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4093	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4094	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4095	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4096	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4097	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4098	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4099	if [[ $use_openmp = true ]]
	4100	then
	4101	mrun_com=${mrun_com}" -O"
	4102	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4103	else
	4104	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4105	fi
	4106	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4107	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4108	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4109	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4110	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4111	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4112	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4113	if [[ $do_remote = true ]]
	4114	then
	4115	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4116	fi
	4117
	4118
	4119	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4120	jobfile=jobfile.$RANDOM
	4121
	4122
	4123	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4124	echo "mkdir $TEMPDIR" >> $jobfile
	4125	echo "cd $TEMPDIR" >> $jobfile
	4126
	4127
	4128	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4129	if [[ $do_trace = true ]]
	4130	then
	4131	echo "set -x" >> $jobfile
	4132	else
	4133	echo "set +vx" >> $jobfile
	4134	fi
	4135
	4136
[191]	4137	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4138	# DATEI FUER DEN JOB
	4139	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4140	then
	4141
[191]	4142	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4143	# KOPIEREN
	4144	if [[ $restart_run != true ]]
	4145	then
	4146	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4147	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4148	fi
[1]	4149
[191]	4150	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4151	echo "set -x" >> $jobfile
	4152	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4153	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4154
[193]	4155	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4156	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4157	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4158	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4159	echo "execute_mrun=true" >> $jobfile
	4160	echo " " >> $jobfile
	4161
[191]	4162	else
	4163
	4164	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4165	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4166	if [[ $do_compile = true ]]
	4167	then
	4168
	4169	source_catalog=SOURCES_FOR_RUN_$fname
	4170
	4171	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4172	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4173	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4174	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4175	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4176	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4177
	4178	for filename in $source_list
	4179	do
	4180	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4181	echo "cat > $filename << \"%END%\"" >> $jobfile
	4182	cat $source_catalog/$filename >> $jobfile
	4183	echo " " >> $jobfile
	4184	echo "%END%" >> $jobfile
	4185	echo " " >> $jobfile
	4186	done
	4187
[1]	4188	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4189	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4190	cat $source_catalog/Makefile >> $jobfile
[1]	4191	echo " " >> $jobfile
	4192	echo "%END%" >> $jobfile
	4193	echo " " >> $jobfile
	4194
[191]	4195	echo "cd - > /dev/null" >> $jobfile
[1]	4196
[191]	4197	fi
[1]	4198
	4199
[191]	4200	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4201	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4202	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4203	cat $config_file >> $jobfile
	4204	echo "%END%" >> $jobfile
	4205	echo " " >> $jobfile
[1]	4206
	4207
[191]	4208	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4209	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4210	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4211	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4212	echo "%END%" >> $jobfile
	4213	if [[ $host = lctit ]]
	4214	then
	4215	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4216	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4217	fi
	4218	echo "chmod u+x $mrun_script_name" >> $jobfile
	4219	echo "execute_mrun=true" >> $jobfile
	4220	echo " " >> $jobfile
[1]	4221
	4222	fi
	4223
[191]	4224
[1]	4225	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4226	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4227	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4228	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4229	if [[ $do_remote = true ]]
	4230	then
	4231	(( i = 0 ))
	4232	while (( i < iin ))
	4233	do
	4234	(( i = i + 1 ))
	4235	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4236	if [[ "${transin[$i]}" = job ]]
	4237	then
	4238	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4239	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4240	echo " " >> $jobfile
	4241	echo "%END%" >> $jobfile
	4242	else
[82]	4243	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4244	fi
	4245
	4246	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4247	echo "if [[ \$? = 1 ]]" >> $jobfile
	4248	echo "then" >> $jobfile
	4249	echo " echo \" \" " >> $jobfile
	4250	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4251	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4252	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4253	echo " execute_mrun=false" >> $jobfile
	4254	echo "fi" >> $jobfile
	4255	done
	4256	fi
	4257
	4258	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4259	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4260	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4261	echo "export LOCAL_PWD" >> $jobfile
	4262
	4263	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4264	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4265	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4266
[66]	4267	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4268	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4269	then
	4270	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4271	fi
[1]	4272
	4273	# MRUN AUF ZIELRECHNER AUFRUFEN
	4274	echo "set -x" >> $jobfile
	4275	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4276
	4277	echo 'ls -al; echo `pwd`' >> $jobfile
	4278	echo "cd \$HOME" >> $jobfile
	4279	echo "rm -rf $TEMPDIR" >> $jobfile
	4280
	4281
	4282
	4283
	4284	# JOB PER SUBJOB STARTEN
	4285	if [[ $silent = false ]]
	4286	then
	4287	printf "\n "
	4288	else
	4289	printf "\n\n"
	4290	fi
	4291
[164]	4292	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
[1]	4293	rm -rf $jobfile
	4294
	4295
	4296	fi # ENDE REMOTE-TEIL
	4297
	4298
	4299
	4300	# ENDE DER PROZEDUR

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