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source: palm/trunk/SCRIPTS/mrun @ 230

Last change on this file since 230 was 223, checked in by raasch, 16 years ago
usage of totalview debugger implemented in mrun
Property svn:keywords set to `Id Rev`
File size: 157.0 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 223 2009-01-13 16:31:47Z heinze $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[211]	170
	171
[1]	172
	173	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	174
	175	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	176	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	177	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	178
	179	AddFilenames=""
	180	additional_conditions=""
	181	add_source_path=""
	182	afname=""
	183	archive_save=true
	184	archive_system=none
	185	compiler_name=""
	186	cond1=""
	187	cond2=""
	188	config_file=.mrun.config
[206]	189	coupled_dist=""
	190	coupled_mode="mpi1"
[1]	191	cpp_opts=""
[82]	192	cpp_options=""
[1]	193	cpumax=0
	194	cpurest=0
	195	delete_temporary_catalog=true
	196	do_batch=false
	197	do_compile=true
	198	do_remote=false
	199	do_stagein=true
	200	do_stageout=true
	201	do_trace=false
	202	email_notification=""
	203	exclude=""
	204	executable=""
	205	execution_error=false
[67]	206	fimm=false
[1]	207	fname=test
	208	fromhost=""
[78]	209	global_revision=""
[122]	210	group_number=none
[1]	211	host=""
	212	host_file=""
	213	hp=""
	214	ignore_archive_error=false
	215	input_list=""
	216	interpreted_config_file=""
[164]	217	job_catalog="~/job_queue"
[1]	218	job_on_file=""
	219	keep_data_from_previous_run=false
[183]	220	link_local_input=false
[149]	221	link_local_output=false
[1]	222	localhost_realname=$(hostname)
	223	local_compile=false
	224	locat=normal
	225	mainprog=""
	226	makefile=""
	227	mc=$0
	228	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	229	do
	230	mc=`echo $mc \| cut -f2- -d"/"`
	231	done
	232	module_files=""
	233	mrun_script_name=$mc
[82]	234	netcdf_inc=""
	235	netcdf_lib=""
[1]	236	netcdf_support=false
	237	node_usage=default
	238	numprocs=""
[206]	239	numprocs_atmos=0
	240	numprocs_ocean=0
[1]	241	OOPT=""
	242	openmp=false
	243	output_list=""
	244	package_list=""
	245	punkte="..........................................................."
	246	queue=none
	247	read_from_config=""
[5]	248	restart_run=false
[146]	249	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	250	if [[ $return_addres = 130.75.105.158 ]]
	251	then
	252	return_addres=172.20.25.41
	253	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	254	fi
	255	# if [[ $return_addres = 210.117.65.1 ]]
	256	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
	257	# then
	258	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
	259	# fi
	260	return_password=""
	261	return_username=$LOGNAME
	262	remotecall=false
	263	remote_username=""
[102]	264	run_coupled_model=false
[1]	265	run_mode=""
	266	scirocco=false
	267	store_on_archive_system=true
	268	striche=" ----------------------------------------------------------------------------"
	269	silent=false
	270	source_list=""
	271	source_path=SOURCE
	272	tasks_per_node=""
	273	threads_per_task=1
	274	tmpcreate=false
	275	tmp_data_catalog=""
	276	transfer_problems=false
	277	usern=$LOGNAME
	278	working_directory=`pwd`
	279	TOPT=""
	280	XOPT=""
	281	zeit=$( date \| cut -c 12-19 )
	282
	283	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	284	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	285
[66]	286	typeset -R30 calltime
[1]	287	typeset -L20 spalte1
	288	typeset -L40 spalte2
	289	typeset -L60 spalte3
	290	typeset -L35 string1=`date`
	291	typeset -L12 string2=$usern
	292	typeset -L12 string3=$localhost_realname
	293	typeset -L12 string4
	294	typeset -L12 string5
[201]	295	typeset -L30 version="MRUN 2.0 Rev$Rev: 223 $"
[1]	296
	297
	298
	299	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	300	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	301
	302	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	303	# EXPORTIERT WERDEN
	304	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	305	export group_number input_list memory numprocs output_list queue run_mode
[1]	306
	307
	308
	309	# FEHLERBEHANDLUNG
	310	# BEI EXIT:
[83]	311	trap 'rm -rf $working_directory/tmp_mrun
[69]	312	if [[ $locat != localhost ]]
[1]	313	then
[22]	314	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	315	# then
	316	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	317	#MRUN-calls on $localhost
	318	#
	319	#date and time user localhost remotehost termination mrun-command
	320	#--------------------------------------------------------------------------------------------------------------------
	321	#%STATEND%
	322	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	323	# fi
	324	#
	325	# # EINTRAG IN DIE STATISTIK-DATEI
	326	# string4=$host
	327	# string5=$locat
	328	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	329	# then
	330	# if [[ $do_batch = true ]]
	331	# then
	332	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	333	# else
	334	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	335	# fi
	336	# fi
[69]	337	echo " " > /dev/null
[1]	338	fi
	339
	340	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	341	then
	342
	343	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	344	(( i = 0 ))
	345	while (( i < iec ))
	346	do
	347	(( i = i + 1 ))
	348	printf "\n *** Execution of ERROR-command:\n"
	349	printf " >>> ${err_command[$i]}\n"
	350	eval ${err_command[$i]}
	351	done
	352	if [[ -n $interpreted_config_file ]] then
	353	rm -rf $interpreted_config_file
	354	fi
[71]	355	if [[ -n .mrun_environment ]] then
	356	rm -rf .mrun_environment
	357	fi
[1]	358	if [[ $tmpcreate = true ]]
	359	then
	360	printf "\n *** Contents of \"$TEMPDIR\":\n"
	361	ls -al; cd
	362	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	363	fi
	364	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	365	then
	366	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	367	fi
	368	printf "\n\n+++ MRUN killed \n\n"
	369	elif [[ $locat != control_c ]]
	370	then
	371	printf "\n\n --> all actions finished\n\n"
	372	printf " Bye, bye $usern !!\n\n"
	373	fi' exit
	374
	375
	376	# BEI TERMINAL-BREAK:
[83]	377	trap 'rm -rf $working_directory/tmp_mrun
[69]	378	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	379	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	380	then
	381	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	382	fi
	383	printf "\n+++ MRUN killed by \"^C\" \n\n"
	384	locat=control_c
	385	exit
	386	' 2
	387
	388
[22]	389	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	390	# BEEN SET
	391	if [[ "$PALM_BIN" = "" ]]
	392	then
	393	printf "\n +++ environment variable PALM_BIN has not been set"
	394	printf "\n please set it to the directory where the PALM scripts are located"
	395	locat=palm_bin; exit
	396	fi
[180]	397	export PATH=$PALM_BIN:$PATH
[22]	398
	399
[1]	400
	401	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	402	# FUER FOLGEJOBS BENOETIGT WIRD
[206]	403	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option
[1]	404	do
	405	case $option in
	406	(a) afname=$OPTARG;;
	407	(A) store_on_archive_system=false; mc="$mc -A";;
	408	(b) do_batch=true; mc="$mc -b";;
	409	(B) delete_temporary_catalog=false; mc="$mc -B";;
	410	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	411	(C) restart_run=true; mc="$mc -C";;
[1]	412	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	413	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	414	(F) job_on_file="-D"; mc="$mc -F";;
[122]	415	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	416	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	417	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	418	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	419	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	420	(I) ignore_archive_error=true; mc="$mc -I";;
	421	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	422	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	423	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	424	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	425	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	426	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	427	(O) use_openmp=true; mc="$mc -O";;
	428	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	429	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	430	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	431	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	432	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	433	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	434	(S) read_from_config=false; mc="$mc -S";;
	435	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	436	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	437	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	438	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	439	(v) silent=true; mc="$mc -v";;
	440	(x) do_trace=true;set -x; mc="$mc -x";;
	441	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[206]	442	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	443	(\?) printf "\n +++ unknown option $OPTARG \n"
	444	printf "\n --> type \"$0 ?\" for available options \n"
	445	locat=parameter;exit;;
	446	esac
	447	done
	448
	449
	450	# EVTL. POSITIONSPARAMETER EINLESEN
	451	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	452	shift OPTIND-1
	453
	454
	455	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	456	if [[ "$1" = "?" ]]
	457	then
	458	(printf "\n *** mrun can be called as follows:\n"
[206]	459	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n"
[1]	460	printf "\n Description of available options:\n"
	461	printf "\n Option Description Default-Value"
	462	printf "\n -a base name of input files equiv. -d"
	463	printf "\n -A no archiving when using file-attribute fl"
	464	printf "\n -b batch-job on local machine ---"
	465	printf "\n -B do not delete temporary directory at end ---"
	466	printf "\n -c configuration file .mrun.config"
	467	printf "\n -d base name of files attached to program test"
	468	printf "\n -D preprocessor(cpp)-directives \"\" "
	469	printf "\n -F create remote job file only ---"
	470	printf "\n -h execution host $localhost_realname"
	471	printf "\n -i INPUT control list \"\" "
	472	printf "\n -I archiving errors of previous batch-jobs"
	473	printf "\n will be ignored"
	474	printf "\n -k keep data from previous run"
	475	printf "\n -K additional conditions for controling"
	476	printf "\n usage of conditional code and"
	477	printf "\n env-variables in configuration file \"\" "
	478	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	479	printf "\n -M Makefile name Makefile"
	480	printf "\n -n node usage (shared/not_shared) depending on -h"
	481	printf "\n -o OUTPUT control list \"\" "
	482	printf "\n -O use OpenMP ---"
	483	printf "\n -p software package list \"\" "
	484	printf "\n -q queue \"$queue\" "
	485	printf "\n -r run control list (combines -i -o) \"\" "
	486	printf "\n -s filenames of routines to be compiled \"\" "
	487	printf "\n must end with .f, .f90, .F, or .c !"
	488	printf "\n use \"..\" for more than one file and wildcards"
	489	printf "\n -s TEST compiles all files with w-permit"
	490	printf "\n -S config file interpreted by shellscript ---"
	491	printf "\n -t allowed cpu-time in seconds (batch) 0"
	492	printf "\n -T tasks per node depending on -h"
	493	printf "\n -u username on remote machine \"\" "
	494	printf "\n -v no prompt for confirmation ---"
	495	printf "\n -x tracing of mrun for debug purposes ---"
	496	printf "\n -X # of processors (on parallel machines) 1"
[206]	497	printf "\n -Y run coupled model, \"#1 #2\" with"
	498	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	499	printf "\n "
	500	printf "\n Possible values of positional parameter <modus>:"
	501	printf "\n \"?\" - this outline \n\n") \| more
	502	exit
	503	elif [[ "$1" != "" ]]
	504	then
	505	printf "\n +++ positional parameter $1 unknown \n"
	506	locat=parameter; exit
	507	fi
	508
	509
	510
	511	# KURZE STARTMELDUNG
	512	printf "\n*** $version "
	513	printf "\n will be executed. Please wait ..."
	514
	515
[82]	516
	517	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	518	if [[ ! -f $config_file ]]
	519	then
	520	printf "\n\n +++ configuration file: "
	521	printf "\n $config_file"
	522	printf "\n does not exist"
	523	locat=connect; exit
	524	fi
	525
	526
	527	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	528	line=""
	529	grep "%host_identifier" $config_file > tmp_mrun
	530	while read line
	531	do
[206]	532	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	533	then
	534	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	535	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	536	if [[ $localhost_realname = $HOSTNAME ]]
[82]	537	then
	538	localhost=$host_identifier
	539	break
	540	fi
	541	fi
	542	done < tmp_mrun
	543
	544	if [[ "$localhost" = "" ]]
	545	then
	546	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	547	printf "\n for local host \"$localhost_realname\"."
	548	printf "\n Please add line"
	549	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	550	printf "\n to the configuration file."
	551	locat=localhost; exit
	552	fi
	553
	554
	555	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	556	case $localhost_realname in
	557	(breg-en0\|berni-en0) archive_system=tivoli;;
	558	(cs*) archive_system=ut;;
	559	(fimm.bccs.uib.no) fimm=true;;
	560	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	561	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	562	(scirocco) scirocco=true;;
	563	esac
	564
	565
	566
[1]	567	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	568	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	569	[[ "$afname" = "" ]] && afname=$fname
	570
	571
	572	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	573	if [[ "$run_mode" != "" ]]
	574	then
	575	input_list="$input_list $run_mode"
	576	output_list="$output_list $run_mode"
	577	fi
	578
	579
	580	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	581	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	582	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	583	# STARTET)
	584	if [[ "$fromhost" = "" ]]
	585	then
	586	fromhost=$localhost
	587	fi
	588
	589
	590	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	591	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	592	then
	593	source_list=TEST
	594	local_compile=true
	595	host=$localhost
	596	fi
	597
	598
	599	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	600	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	601	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	602	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	603	if [[ -n $host && "$host" != $localhost ]]
	604	then
	605	do_batch=true
	606	do_remote=true
	607	case $host in
[206]	608	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
[1]	609	(*) printf "\n"
[83]	610	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	611	printf "\n is not available"
[1]	612	locat=nqs; (( iec = 0 )); exit;;
	613	esac
	614	else
	615	host=$localhost
	616	fi
	617
	618
	619	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	620	if [[ -n $additional_conditions ]]
	621	then
[69]	622	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	623	cond1=`echo $additional_conditions \| cut -d" " -f1`
	624	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	625	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	626	if [[ -n $dummy ]]
	627	then
	628	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	629	locat=options; exit
	630	fi
	631	fi
	632
	633
[206]	634	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	635	if [[ $run_coupled_model = true ]]
	636	then
	637
	638	if [[ -n $coupled_dist ]]
	639	then
	640
	641	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	642	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	643
	644	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	645	then
	646
	647	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	648	printf "\n PEs (total) : $numprocs"
	649	printf "\n PEs (atmosphere): $numprocs_atmos"
	650	printf "\n PEs (ocean) : $numprocs_ocean"
	651	locat=coupling; exit
	652
	653	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	654	# THIS SHOULD BE REMOVED IN FUTURE
	655	elif (( $numprocs_ocean != $numprocs_atmos ))
	656	then
	657
	658	printf "\n +++ currently only 1:1 topologies are supported"
	659	printf "\n PEs (total) : $numprocs"
	660	printf "\n PEs (atmosphere): $numprocs_atmos"
	661	printf "\n PEs (ocean) : $numprocs_ocean"
	662	(( numprocs_atmos = $numprocs / 2 ))
	663	(( numprocs_ocean = $numprocs / 2 ))
	664	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	665
	666	fi
	667
	668	else
	669
	670	(( numprocs_ocean = $numprocs / 2 ))
	671	(( numprocs_atmos = $numprocs / 2 ))
	672
	673	fi
	674	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	675
	676	# GET coupled_mode FROM THE CONFIG FILE
	677	line=""
	678	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	679	while read line
	680	do
	681	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	682	then
	683	coupled_mode="mpi2"
	684	fi
	685	done < tmp_mrun
	686
	687	fi
	688
	689
[1]	690	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	691	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	692	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	693	then
	694	if [[ $ignore_archive_error = false ]]
	695	then
	696	printf "\n +++ data archiving of previous run failed"
	697	printf "\n see directory \~/job_queue on remote machine"
	698	locat=archive; exit
	699	else
	700	printf "\n +++ warning: data archiving in a previous run failed"
	701	printf "\n MRUN continues, trying to get backup copy"
	702	fi
	703	fi
	704
	705
	706
	707	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	708	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	709	if [[ "$read_from_config" = false ]]
	710	then
	711
	712	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	713	while read zeile
	714	do
	715	[[ $silent = false ]] && printf "."
	716
	717
	718	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	719	# ERSETZEN
	720	eval zeile=\"$zeile\"
	721
	722
	723	# INTERPRETATION DER ZEILE
[21]	724	if [[ "$(echo $zeile)" = "" ]]
[1]	725	then
[21]	726	# LEERZEILE, KEINE AKTION
	727	continue
[1]	728
[21]	729	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	730	then
	731
[1]	732	# ZEILE IST KOMMENTARZEILE
	733	true
	734
	735	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	736	then
	737
	738	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	739	zeile=$(echo $zeile \| cut -c2-)
[69]	740	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	741	var=`echo $zeile \| cut -d" " -f1`
	742	value=`echo $zeile \| cut -d" " -s -f2`
	743	for_host=`echo $zeile \| cut -d" " -s -f3`
	744	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	745	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	746
	747	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	748	then
	749
	750	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	751	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	752	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	753
	754
	755	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	756	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	757	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	758	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	759	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	760	# KONFIGURATIONSDATEI
	761	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	762	then
	763	eval $var=\$value
	764
	765	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	766	if [[ $do_trace = true ]]
	767	then
	768	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	769	fi
	770	fi
	771
	772	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	773	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	774	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	775	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	776	if [[ $var = host ]]
	777	then
	778	if [[ -n $host && "$host" != $localhost ]]
	779	then
	780	do_batch=true
	781	do_remote=true
	782	case $host in
[206]	783	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
[83]	784	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	785	printf "\n is not available"
[1]	786	locat=nqs; exit;;
	787	esac
	788	else
	789	host=$localhost
	790	fi
	791	fi
	792
	793	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	794	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	795	# DEN PROGRAMMEN BENOETIGT WERDEN
	796	export $var
	797	fi
	798
	799
	800
	801
	802	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	803	then
	804
	805	# ZEILE DEFINIERT ERROR-KOMMANDO
	806	(( iec = iec + 1 ))
	807	zeile=$(echo $zeile \| cut -c4-)
	808	err_command[$iec]="$zeile"
	809
	810	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	811	then
	812
	813	# ZEILE DEFINIERT INPUT-KOMMANDO
	814	(( iic = iic + 1 ))
	815	zeile=$(echo $zeile \| cut -c4-)
	816	in_command[$iic]="$zeile"
	817
	818	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	819	then
	820
	821	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	822	(( ioc = ioc + 1 ))
	823	zeile=$(echo $zeile \| cut -c4-)
	824	out_command[$ioc]="$zeile"
	825
	826	else
	827
	828	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	829	# s2a: in/out - Feld
	830	# s2b: loc - Feld (optional)
	831	# s2c: tr/ar - Feld (optional)
[69]	832	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	833	s1=`echo $zeile \| cut -d" " -f1`
	834	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	835	s2a=$(echo $s2 \| cut -d":" -f1)
	836	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	837	then
	838	s2b=""
	839	s2c=""
	840	else
[69]	841	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	842	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	843	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	844	fi
[69]	845	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	846	s3=`echo $zeile \| cut -d" " -f3`
	847	s4=`echo $zeile \| cut -d" " -s -f4`
	848	s5=`echo $zeile \| cut -d" " -s -f5`
	849	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	850
	851
	852	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	853	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	854	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	855	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	856	# HANDEN SEIN MUSS (D.H. s2b = loc)
	857	IFSALT="$IFS"; IFS="$IFS:"
	858	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	859	then
	860	found=false
	861	for actual in $input_list
	862	do
	863	for formal in $s3
	864	do
	865	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	866	done
	867	done
	868	if [[ $found = true ]]
	869	then
	870	(( iin = iin + 1 ))
	871	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	872	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	873	extin[$iin]=$s6
	874	fi
	875	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	876	then
	877	found=false
	878	for actual in $output_list
	879	do
	880	for formal in $s3
	881	do
	882	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	883	done
	884	done
	885	if [[ $found = true ]]
	886	then
	887	(( iout = iout + 1 ))
	888	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	889	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	890	fi
	891	elif [[ "$s2a" != in && "$s2a" != out ]]
	892	then
	893	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	894	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	895	locat=connect; exit
	896	fi
	897	IFS="$IFSALT"
	898	fi
	899	done < $config_file
	900
	901	else
	902
	903
	904	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	905	[[ $silent = false ]] && printf "..."
	906	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	907	export interpreted_config_file=.icf.$RANDOM
	908
	909
[69]	910
	911	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	912	# VERFUEGUNG STELLEN
	913	cat > .mrun_environment << %%END%%
	914	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	915	config_file = '$config_file', do_remote = '$do_remote',
	916	do_trace = '$do_trace', host = '$host',
	917	input_list = '$input_list', icf = '$interpreted_config_file',
	918	localhost = '$localhost', output_list = '$output_list' /
	919
	920	%%END%%
	921
	922	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	923	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	924	mrun_memory=$memory
[127]	925	mrun_group_number=$group_number
[69]	926	mrun_cpumax=$cpumax
	927	mrun_numprocs=$numprocs
	928
[66]	929	if [[ $localhost_realname = "gate" ]]
	930	then
	931	interpret_config_gate.x
	932	else
	933	interpret_config.x
	934	fi
[71]	935	rm .mrun_environment
[1]	936
[71]	937
[1]	938	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	939	chmod u+x $interpreted_config_file
	940	export PATH=$PATH:.
	941	. $interpreted_config_file
[71]	942	rm $interpreted_config_file
[1]	943
[71]	944
[69]	945	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	946	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	947	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	948	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	949	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	950
[1]	951	fi
	952
	953
	954	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	955	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	956	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	957	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	958	if [[ "$SOURCES_COMPLETE" = "" ]]
	959	then
	960
	961	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	962	# VEREINBART WURDE
	963	source_path=""
	964	line=""
	965	grep "%source_path" $config_file > tmp_mrun
	966	while read line
	967	do
	968	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	969	then
	970	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	971	then
	972	global_source_path=`echo $line \| cut -d" " -f2`
	973	fi
	974	fi
	975	done < tmp_mrun
	976
	977	line=""
	978	found=false
	979	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	980	while read line
	981	do
	982	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	983	then
	984	if [[ $found = true ]]
	985	then
	986	printf "\n\n +++ more than one source path found in configuration file"
	987	printf "\n for local host \"$localhost\" "
	988	locat=source_path; exit
	989	fi
	990	source_path=`echo $line \| cut -d" " -f2`
	991	found=true
	992	fi
	993	done < tmp_mrun
	994	rm tmp_mrun
	995
	996	if [[ "$source_path" = "" ]]
	997	then
	998	if [[ "$global_source_path" != "" ]]
	999	then
	1000	source_path=$global_source_path
	1001	else
	1002	printf "\n\n +++ no source path found in configuration file"
	1003	printf "\n for local host \"$localhost\" "
	1004	locat=source_path; exit
	1005	fi
	1006	fi
	1007	eval source_path=$source_path
	1008
	1009	if [[ ! -d $source_path ]]
	1010	then
	1011	printf "\n\n +++ source path \"$source_path\" on local host"
	1012	printf "\n \"$localhost\" does not exist"
	1013	locat=source_path; exit
	1014	fi
	1015
	1016	fi
	1017
	1018
[78]	1019	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1020	# DURCH OPTION -G MITGETEILT)
	1021	if [[ "$global_revision" = "" ]]
	1022	then
	1023	global_revision=`svnversion $source_path 2>/dev/null`
	1024	global_revision="Rev: $global_revision"
	1025	fi
[1]	1026
[78]	1027
[1]	1028	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1029	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1030	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1031	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1032	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1033	if [[ -n $host && "$host" != $localhost ]]
	1034	then
	1035	do_batch=true
	1036	do_remote=true
	1037	case $host in
[206]	1038	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|neck\|unics\|lcxt4) true;;
[1]	1039	(*) printf "\n"
[83]	1040	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1041	printf "\n is not available"
[1]	1042	locat=nqs; (( iec = 0 )); exit;;
	1043	esac
	1044	else
	1045	host=$localhost
	1046	fi
	1047
	1048
	1049	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1050	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1051	then
	1052
	1053	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1054	if [[ ! -n $numprocs ]]
	1055	then
	1056	printf "\n"
	1057	printf "\n +++ option \"-K parallel\" requires additional specification"
	1058	printf "\n of the number of processors to be used by"
	1059	printf "\n mrun-option \"-X\" or by environment-variable"
	1060	printf "\n \"numprocs\" in the configuration file"
	1061	locat=numprocs; (( iec = 0 )); exit
	1062	fi
	1063
	1064	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1065	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1066	# GESAMTPROZESSORANZAHL IST
	1067	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
	1068	then
	1069	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1070	(( ival = $tasks_per_node ))
	1071	(( pes = numprocs ))
	1072	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1073	# then
	1074	# (( pes = pes - 1 ))
	1075	# fi
	1076	(( ii = pes / ival ))
	1077	if (( pes - ii * ival > 0 ))
	1078	then
	1079	printf "\n"
	1080	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1081	printf "\n divisor of the total number of processors (option \"-X\")"
	1082	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1083	locat=tasks_per_node; (( iec = 0 )); exit
	1084	fi
	1085	fi
	1086
	1087	# IBMY HAT NUR EINEN KNOTEN
	1088	if [[ $host = ibmy ]]
	1089	then
	1090	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1091	then
	1092	printf "\n"
	1093	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1094	printf "\n total number of processors (option \"-X\")"
	1095	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1096	locat=tasks_per_node; (( iec = 0 )); exit
	1097	fi
	1098	fi
	1099
	1100	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1101	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1102	if [[ $use_openmp = true ]]
	1103	then
	1104	threads_per_task=$tasks_per_node
	1105	tasks_per_node=1
	1106	fi
	1107	OOPT="-O $threads_per_task"
	1108	TOPT="-T $tasks_per_node"
	1109
	1110	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1111	if [[ "$tasks_per_node" != "" ]]
	1112	then
	1113	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1114	fi
	1115
	1116	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1117	# SETZEN
	1118	if [[ $node_usage = default ]]
	1119	then
	1120	if [[ $host = ibms ]]
	1121	then
	1122	node_usage=shared
[118]	1123	elif [[ $host = lctit ]]
	1124	then
[129]	1125	node_usage=sla3
[181]	1126	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1127	then
	1128	node_usage=singlejob
[1]	1129	else
	1130	node_usage=not_shared
	1131	fi
	1132	fi
[181]	1133
	1134	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
[1]	1135	then
	1136	printf "\n"
	1137	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1138	printf "\n \"shared\" or \"not_shared\""
	1139	locat=tasks_per_node; (( iec = 0 )); exit
	1140	fi
	1141
	1142	fi
	1143
	1144	# PRUEFEN, OB HOSTFILE EXISTIERT
	1145	if [[ -n $hostfile ]]
	1146	then
	1147	if [[ ! -f $hostfile ]]
	1148	then
	1149	printf "\n"
	1150	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1151	locat=hostfile; exit
	1152	fi
	1153	fi
	1154
	1155	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1156	if [[ $host = ibmy && $do_remote = false ]]
	1157	then
	1158	if [[ ! -f $HOME/.rhosts ]]
	1159	then
	1160	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1161	printf "\n\n *** file:"
	1162	printf "\n $HOME/.rhosts"
	1163	printf "\n was created\n"
	1164	fi
	1165	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1166	then
	1167	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1168	printf "\n\n *** file:"
	1169	printf "\n $HOME/.rhosts"
	1170	printf "\n was extended by the name of the current host\n"
	1171	fi
	1172	fi
	1173
	1174
	1175
	1176	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1177	if [[ $queue = none ]]
	1178	then
	1179	case $host in
	1180	(ibmb) if [[ $node_usage = shared ]]
	1181	then
	1182	queue=cshare
	1183	else
	1184	queue=csolo
	1185	fi;;
	1186	(ibmh) if [[ $node_usage = shared ]]
	1187	then
	1188	queue=cshare
	1189	else
	1190	queue=csolo
	1191	fi;;
	1192	(ibmy) queue=parallel;;
[191]	1193	(lcsgib) queue=bigq;;
	1194	(lcsgih) queue=bigq;;
[129]	1195	(lctit) queue=sla3;;
[1]	1196	(nech) queue=none;;
	1197	(neck) queue=P;;
	1198	(unics) queue=unics;;
	1199	esac
	1200	fi
	1201
	1202
	1203	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1204	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1205	# ERMITTELN
	1206	(( i = 0 ))
	1207	while (( i < iin ))
	1208	do
	1209	(( i = i + 1 ))
	1210	(( maxcycle = 0 ))
	1211
	1212	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1213	if [[ "${actionin[$i]}" = di ]]
	1214	then
	1215	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1216	# REM-MASCHINE AUSWERTEN
	1217	eval filename=${pathin[$i]}/${endin[$i]}
	1218	else
	1219	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1220	# REM-MASCHINE AUSWERTEN
	1221	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1222	fi
	1223
	1224	# PRUEFEN AUF VORHANDENSEIN
	1225	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1226	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1227	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1228	then
	1229	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1230	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1231	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1232	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1233	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1234	if [[ "${transin[$i]}" != "locopt" ]]
	1235	then
	1236	printf "\n\n +++ INPUT-file: "
	1237	if [[ "${extin[$i]}" = "" ]]
	1238	then
	1239	printf "\n $filename"
	1240	else
	1241	printf "\n $filename.${extin[$i]}"
	1242	fi
	1243	printf "\n does not exist\n"
	1244	locat=input; exit
	1245	else
	1246	transin[$i]="unavailable"
	1247	fi
	1248	else
	1249
	1250	# ZYKLUSNUMMER FESTSTELLEN
	1251	ls -1 -d $filename > filelist 2>/dev/null
	1252	ls -1 -d $filename.* >> filelist 2>/dev/null
	1253	while read zeile
	1254	do
	1255	cycle=$(print $zeile \| cut -f2 -d".")
	1256	if [[ "$cycle" = "$zeile" ]]
	1257	then
	1258	(( icycle = 0 ))
	1259	elif [[ "$cycle" = "${extin[$i]}" ]]
	1260	then
	1261	(( icycle = 0 ))
	1262	else
	1263	(( icycle = $cycle ))
	1264	fi
	1265	if (( icycle > maxcycle ))
	1266	then
	1267	(( maxcycle = icycle ))
	1268	file_to_be_used=$zeile
	1269	fi
	1270	done <filelist
	1271	rm filelist
	1272
	1273	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1274	if (( maxcycle > 0 ))
	1275	then
	1276	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1277	then
	1278	filename=${filename}.$maxcycle.${extin[$i]}
	1279	else
	1280	filename=${filename}.$maxcycle
	1281	fi
	1282	else
	1283	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1284	then
	1285	filename=${filename}.${extin[$i]}
	1286	fi
	1287	fi
	1288
	1289	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1290	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1291	absnamein[$i]=$filename
	1292	if (( maxcycle > 0 ))
	1293	then
	1294	if [[ "${actionin[$i]}" = di ]]
	1295	then
	1296	frelin[$i]=${endin[$i]}.$maxcycle
	1297	else
	1298	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1299	fi
	1300	else
	1301	if [[ "${actionin[$i]}" = di ]]
	1302	then
	1303	frelin[$i]=${endin[$i]}
	1304	else
	1305	frelin[$i]=${afname}${endin[$i]}
	1306	fi
	1307	fi
	1308
	1309	fi
	1310	done
	1311
	1312
	1313	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1314	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1315	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1316	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1317	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1318	(( i = 0 ))
	1319	while (( i < iout ))
	1320	do
	1321	(( i = i + 1 ))
	1322	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1323	then
	1324	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
	1325	then
	1326	actionout[$i]=""
	1327	elif [[ "${actionout[$i]}" = tra ]]
	1328	then
	1329	actionout[$i]=a
	1330	fi
	1331	(( maxcycle = 0 ))
	1332	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1333	eval catalogname=${pathout[$i]}
	1334	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1335	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1336	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1337	then
	1338
	1339	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1340	if cat /dev/null > $filename
	1341	then
	1342	rm $filename
	1343	else
	1344
	1345	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1346	if [[ ! -d $catalogname ]]
	1347	then
	1348	if mkdir -p $catalogname
	1349	then
	1350	printf "\n\n *** directory:"
	1351	printf "\n $catalogname"
	1352	printf "\n was created\n"
	1353	else
	1354	printf "\n\n +++ OUTPUT-file:"
	1355	printf "\n $filename"
	1356	printf "\n cannot be created, because directory does not exist"
	1357	printf "\n and cannot be created either"
	1358	printf "\n"
	1359	locat=output ; exit
	1360	fi 2>/dev/null
	1361	else
	1362	printf "\n\n +++ OUTPUT-file:"
	1363	printf "\n $filename"
	1364	printf "\n cannot be created, although directory exists"
	1365	printf "\n"
	1366	locat=output ; exit
	1367	fi
	1368	fi 2>/dev/null
	1369	else
	1370
	1371	# ZYKLUSNUMMER FESTSTELLEN
	1372	ls -1 -d $filename > filelist 2>/dev/null
	1373	ls -1 -d $filename.* >> filelist 2>/dev/null
	1374	while read zeile
	1375	do
	1376	cycle=$(print $zeile \| cut -f2 -d".")
	1377	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1378	then
	1379	(( icycle = 1 ))
	1380	else
	1381	(( icycle = $cycle + 1 ))
	1382	fi
	1383	if (( icycle > maxcycle ))
	1384	then
	1385	(( maxcycle = icycle ))
	1386	fi
	1387	done <filelist
	1388	rm filelist
	1389	fi
	1390
	1391	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1392	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1393	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1394	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1395	if [[ "${actionout[$i]}" != a ]]
	1396	then
	1397	if (( maxcycle > 0 ))
	1398	then
	1399	filename=${filename}.$maxcycle
	1400	if cat /dev/null > $filename
	1401	then
	1402	rm $filename
	1403	else
	1404	printf "\n +++ OUTPUT-file:"
	1405	printf "\n $filename"
	1406	printf "\n cannot be created"
	1407	locat=output ; exit
	1408	fi
	1409	fi
	1410	else
	1411	(( maxcycle = maxcycle - 1 ))
	1412	if (( maxcycle > 0 ))
	1413	then
	1414	filename=${filename}.$maxcycle
	1415	fi
	1416	fi
	1417
	1418	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1419	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1420	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1421	pathout[$i]=$filename
	1422	if (( maxcycle > 0 ))
	1423	then
	1424	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1425	else
	1426	frelout[$i]=${fname}${endout[$i]}
	1427	fi
	1428
	1429	fi
	1430	done
	1431
	1432
[83]	1433	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
	1434	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1435	then
	1436	if [[ "$dvrp_inc" = "" ]]
	1437	then
	1438	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
	1439	printf "\n This is required for the dvrp_graphics package.\n"
	1440	locat=dvrp; exit
	1441	fi
	1442	if [[ "$dvrp_lib" = "" ]]
	1443	then
	1444	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
	1445	printf "\n This is required for the dvrp_graphics package.\n"
	1446	locat=dvrp; exit
	1447	fi
	1448	fi
	1449
	1450
[1]	1451	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1452	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1453	# UEBERSETZT ZU WERDEN)
	1454	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1455	then
	1456	printf "\n +++ neither main program nor executable defined"
	1457	locat=source; exit
	1458	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1459	then
	1460	printf "\n +++ main program as well as executable defined"
	1461	locat=source; exit
	1462	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1463	then
	1464	do_compile=false
	1465	fi
	1466
	1467
[191]	1468	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1469	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1470	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1471	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1472	then
	1473	rm -rf SOURCES_FOR_RUN_$fname
	1474	mkdir SOURCES_FOR_RUN_$fname
	1475	fi
	1476
	1477
[1]	1478	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1479	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1480	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1481	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1482	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1483	then
	1484
[5]	1485	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1486	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1487
	1488
	1489	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1490	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1491	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1492	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1493	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1494	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1495	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1496	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1497	# GESAMMELT
[5]	1498	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1499	then
	1500
	1501	source_list=""
	1502	cd $source_path
	1503
	1504
	1505	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1506	Names=$(ls -1 *.f90 2>&1)
	1507	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1508	Names=$(ls -1 *.F90 2>&1)
	1509	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1510	Names=$(ls -1 *.F 2>&1)
	1511	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1512	Names=$(ls -1 *.f 2>&1)
	1513	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1514	Names=$(ls -1 *.c 2>&1)
	1515	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1516
	1517
	1518	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1519	for dateiname in $Filenames
	1520	do
	1521	if [[ -w $dateiname ]]
	1522	then
	1523	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1524	then
	1525	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1526	source_list=$source_list"$dateiname "
	1527	fi
	1528	fi
	1529	done
	1530
	1531	cd - > /dev/null
	1532
	1533
[5]	1534	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1535	then
	1536
	1537	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1538	source_list=""
	1539	cd $source_path
	1540
	1541
	1542	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1543	if [[ ! -d .svn ]]
	1544	then
	1545	printf "\n\n +++ source directory"
	1546	printf "\n \"$source_path\" "
	1547	printf "\n is not under control of \"subversion\"."
	1548	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
	1549	fi
	1550
	1551
	1552	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1553	Filenames=""
[69]	1554	svn status > tmp_mrun
	1555	while read line
[5]	1556	do
	1557	firstc=`echo $line \| cut -c1`
	1558	if [[ $firstc = M \|\| $firstc = "?" ]]
	1559	then
	1560	Name=`echo "$line" \| cut -c8-`
	1561	extension=`echo $Name \| cut -d. -f2`
	1562	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1563	then
	1564	Filenames="$Filenames "$Name
	1565	fi
	1566	fi
[69]	1567	done < tmp_mrun
[5]	1568
	1569
	1570	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1571	for dateiname in $Filenames
	1572	do
	1573	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1574	source_list=$source_list"$dateiname "
	1575	done
	1576
	1577	cd - > /dev/null
	1578
	1579
[1]	1580	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1581	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1582	# VORHANDEN
[5]	1583	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1584	then
	1585
	1586	cd $source_path
	1587
	1588	for filename in $source_list
	1589	do
	1590
	1591	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1592	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1593	then
	1594	printf "\n +++ source code file: $filename"
	1595	printf "\n must not contain (\"/\") "
	1596	locat=source; exit
	1597	fi
	1598
	1599	if [[ ! -f $filename ]]
	1600	then
	1601	printf "\n +++ source code file: $filename"
	1602	printf "\n does not exist"
	1603	locat=source; exit
	1604	else
	1605	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1606	fi
	1607
	1608	done
	1609
	1610	cd - > /dev/null
	1611
	1612	fi
	1613
	1614
	1615	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1616	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1617	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1618	if [[ $restart_run != true ]]
[1]	1619	then
	1620
	1621	if [[ ! -f "$source_path/$mainprog" ]]
	1622	then
	1623	printf "\n\n +++ main program: $mainprog"
	1624	printf "\n does not exist in source directory"
	1625	printf "\n \"$source_path\"\n"
	1626	locat=source; exit
	1627	else
	1628	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1629	then
	1630	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1631	source_list=${mainprog}" $source_list"
	1632	fi
	1633	fi
	1634	fi
	1635
	1636
[211]	1637	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1638	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1639	if [[ "$restart_run" != true ]]
	1640	then
	1641	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1642	if [[ ! -f $makefile ]]
	1643	then
	1644	printf "\n +++ file \"$makefile\" does not exist"
	1645	locat=make; exit
	1646	else
	1647	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1648	fi
	1649	fi
	1650
	1651
[1]	1652	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1653	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1654	then
	1655
	1656	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1657	if [[ ! -d $add_source_path ]]
	1658	then
	1659	printf "\n\n +++ WARNING: additional source code directory"
	1660	printf "\n \"$add_source_path\" "
	1661	printf "\n does not exist or is not a directory."
	1662	printf "\n No source code will be used from this directory!\n"
	1663	add_source_path=""
	1664	sleep 3
	1665	else
	1666
	1667	cd $add_source_path
[211]	1668	found=false
[1]	1669
	1670	Names=$(ls -1 *.f90 2>&1)
	1671	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1672	Names=$(ls -1 *.F90 2>&1)
	1673	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1674	Names=$(ls -1 *.F 2>&1)
	1675	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1676	Names=$(ls -1 *.f 2>&1)
	1677	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1678	Names=$(ls -1 *.c 2>&1)
	1679	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1680
	1681	cd - > /dev/null
	1682	cd SOURCES_FOR_RUN_$fname
	1683
[211]	1684	# COPY MAKEFILE IF EXISTING
	1685	if [[ -f $add_source_path/Makefile ]]
	1686	then
	1687	printf "\n\n *** user Makefile from directory"
	1688	printf "\n \"$add_source_path\" is used \n"
	1689	sleep 1
	1690	cp $add_source_path/Makefile .
	1691	fi
	1692
[1]	1693	for dateiname in $AddFilenames
	1694	do
	1695	if [[ -f $dateiname ]]
	1696	then
	1697	printf "\n +++ source code file \"$dateiname\" found in additional"
	1698	printf "\n source code directory \"$add_source_path\" "
[211]	1699	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1700	printf "\n from directory \"$source_path\"."
[1]	1701	locat=source; exit
	1702	fi
	1703
	1704	cp $add_source_path/$dateiname .
	1705	source_list="$source_list $dateiname"
	1706
[211]	1707	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1708	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1709	then
	1710	printf "\n\n +++ user file \"$dateiname\" "
	1711	printf "\n is not listed in Makefile \n"
	1712	locat=source; exit
	1713	else
	1714
[1]	1715	# Default User-Interface von der Liste entfernen, falls Datei
	1716	# ein User-Interface enthaelt
[211]	1717	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1718	# then
	1719	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1720	# then
	1721	# rm -rf user_interface.f90
	1722	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1723	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1724	# printf "\n since a user-interface is found in file"
	1725	# printf "\n \"$add_source_path/$dateiname\" \n"
	1726	# sleep 3
	1727	# else
	1728	if [[ $found = false ]]
[1]	1729	then
[211]	1730	found=true
	1731	printf "\n\n *** following user file(s) added to the"
	1732	printf " files to be translated:\n "
[1]	1733	fi
[211]	1734	printf "$dateiname "
	1735	sleep 0.5
[1]	1736	fi
	1737	done
[211]	1738	[[ $found = true ]] && printf "\n"
[1]	1739	cd - > /dev/null
	1740	fi
	1741	fi
	1742
	1743
	1744	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1745	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1746	if [[ $restart_run != true && -n $package_list ]]
[1]	1747	then
	1748
	1749	cd $source_path
	1750
	1751	for package in $package_list
	1752	do
	1753
	1754	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1755
	1756	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1757	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1758	# LIEFERT
	1759	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1760
	1761
	1762	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1763	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1764	for source_list_name in $package_source_list
	1765	do
	1766	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1767	then
	1768
	1769	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1770	ending=`echo $source_list_name \| cut -f2 -d.`
	1771	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1772	then
	1773	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1774	source_list="$source_list $source_list_name"
	1775	fi
	1776	fi
	1777	done
	1778	done
	1779
	1780	cd - > /dev/null
	1781	fi
	1782
	1783
	1784	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1785	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1786	# if [[ "$restart_run" != true ]]
	1787	# then
	1788	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1789	# if [[ ! -f $makefile ]]
	1790	# then
	1791	# printf "\n +++ file \"$makefile\" does not exist"
	1792	# locat=make; exit
	1793	# else
	1794	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1795	# fi
	1796	# fi
[1]	1797
	1798	fi # do_compile=true
	1799
	1800
	1801	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1802	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1803	if [[ $do_compile = true ]]
	1804	then
	1805
	1806	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1807	# ZUSAMMENSETZEN
[83]	1808	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1809	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1810	then
[82]	1811	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1812	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1813	then
[82]	1814	cpp_options="$cpp_options -D__nec"
	1815	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1816	then
	1817	cpp_options="$cpp_options -D__lc"
[1]	1818	else
[82]	1819	cpp_options="$cpp_options -D__$localhost"
[1]	1820	fi
[83]	1821
	1822	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1823	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1824	then
[82]	1825	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1826	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1827	else
[82]	1828	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1829	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1830	fi
[83]	1831
	1832	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1833	if [[ -n $package_list ]]
	1834	then
	1835	for package in $package_list
	1836	do
	1837	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1838	then
	1839	if [[ $package != "dvrp_graphics+1PE" ]]
	1840	then
[82]	1841	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1842	else
[82]	1843	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1844	export use_seperate_pe_for_dvrp_output=true
	1845	fi
	1846	else
	1847	if [[ $package != "dvrp_graphics+1PE" ]]
	1848	then
[82]	1849	cpp_options="$cpp_options -D__$package"
[1]	1850	else
[82]	1851	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1852	export use_seperate_pe_for_dvrp_output=true
	1853	fi
	1854	fi
	1855	done
	1856	fi
[83]	1857
	1858	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1859	if [[ -n $cpp_opts ]]
	1860	then
	1861	for popts in $cpp_opts
	1862	do
[82]	1863	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1864	then
	1865	cpp_options="${cpp_options},-D__$popts=__$popts"
	1866	else
	1867	cpp_options="$cpp_options -D__$popts"
	1868	fi
[1]	1869	done
	1870	fi
	1871
	1872	else
	1873
	1874
	1875	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1876	if [[ $do_remote = false ]]
	1877	then
	1878	if [[ ! -f $executable ]]
	1879	then
	1880	printf "\n +++ executable file: $executable"
	1881	printf "\n does not exist"
	1882	locat=executable; exit
	1883	fi
	1884	fi
	1885	fi
	1886
	1887
	1888	# JOBMODUS FESTSTELLEN
	1889	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1890	then
	1891	jobmo=BATCH
	1892	else
	1893	jobmo=INTERACTIVE
	1894	fi
	1895
	1896
	1897	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1898	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1899	if [[ "$compiler_name" = "" ]]
	1900	then
[82]	1901
[220]	1902	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1903	locat=compiler_name; exit
	1904
[1]	1905	fi
	1906
	1907
	1908	# COMPILER AUF NECK UEBERSCHREIBEN
	1909	[[ $localhost = neck ]] && compiler_name=mpif90
	1910
	1911
	1912
	1913	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1914	kennung=$RANDOM
	1915	if [[ "$tmp_user_catalog" = "" ]]
	1916	then
	1917	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1918	then
	1919	tmp_user_catalog=$TMPDIR
	1920	elif [[ $localhost = nech ]]
	1921	then
	1922	tmp_user_catalog=$WRKSHR
	1923	else
	1924	tmp_user_catalog=/tmp
	1925	fi
	1926	fi
	1927	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1928
	1929
	1930	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1931	# BESTIMMEN
	1932	if [[ "$tmp_data_catalog" = "" ]]
	1933	then
	1934	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1935	then
	1936	tmp_data_catalog=$WORK/mrun_restart_data
	1937	elif [[ $localhost = nech ]]
	1938	then
	1939	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1940	else
	1941	tmp_data_catalog=/tmp/mrun_restart_data
	1942	fi
	1943	fi
	1944
	1945
	1946	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1947	# ERSETZEN
	1948	if [[ $do_remote = false && $do_compile = true ]]
	1949	then
	1950	eval fopts=\"$fopts\"
	1951	eval lopts=\"$lopts\"
	1952	fi
	1953
	1954
	1955
	1956	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[82]	1957	fopts="$fopts $netcdf_inc $dvrp_inc"
	1958	lopts="$lopts $netcdf_lib $dvrp_lib"
[1]	1959	ROPTS="$ropts"
[179]	1960	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
[1]	1961	then
	1962	XOPT="-X $numprocs"
	1963	fi
	1964
	1965
	1966
	1967	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1968	# GRAMM BENOETIGT
	1969	done=false
	1970	while [[ $done = false ]]
	1971	do
	1972	cputime=$cpumax
	1973	if (( $cputime == 0 ))
	1974	then
	1975	printf "\n +++ cpu-time is undefined"
	1976	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1977	printf "\n >>> "
	1978	read cputime 1>/dev/null 2>&1
	1979	else
	1980	done=true
	1981	fi
	1982	cpumax=$cputime
	1983	done
	1984
	1985	(( minuten = cputime / 60 ))
	1986	(( sekunden = cputime - minuten * 60 ))
	1987
	1988
	1989	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1990	if [[ $do_batch = true ]]
	1991	then
	1992	done=false
	1993	while [[ $done = false ]]
	1994	do
	1995	if (( memory == 0 ))
	1996	then
	1997	printf "\n +++ memory demand is undefined"
	1998	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1999	printf "\n >>> "
	2000	read memory 1>/dev/null 2>&1
	2001	else
	2002	done=true
	2003	fi
	2004	done
	2005	fi
	2006
	2007
	2008	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2009	if [[ $do_remote = true && -z $remote_username ]]
	2010	then
	2011	while [[ -z $remote_username ]]
	2012	do
	2013	printf "\n +++ username on remote host \"$host\" is undefined"
	2014	printf "\n >>> Please type username:"
	2015	printf "\n >>> "
	2016	read remote_username
	2017	done
	2018	mc="$mc -u$remote_username"
	2019	fi
	2020
[221]	2021
	2022	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2023	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2024	then
	2025	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2026	fi
	2027
	2028
	2029
[1]	2030	###########################################################################
	2031	# HEADER-AUSGABE
	2032	###########################################################################
	2033
	2034
	2035	calltime=$(date)
	2036	printf "\n"
	2037	# [[ $silent = false ]] && clear
	2038	printf "#--------------------------------------------------------------# \n"
	2039	printf "\| $version$calltime \| \n"
	2040	printf "\| \| \n"
	2041	spalte1="called on:"; spalte2=$localhost_realname
	2042	printf "\| $spalte1$spalte2 \| \n"
	2043	if [[ $local_compile = false ]]
	2044	then
	2045	if [[ $do_remote = true ]]
	2046	then
	2047	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2048	else
	2049	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2050	fi
	2051	else
	2052	spalte1="compiling test only!"; spalte2=""
	2053	fi
	2054	printf "\| $spalte1$spalte2 \| \n"
	2055	if [[ -n $numprocs ]]
	2056	then
	2057	spalte1="number of PEs:"; spalte2=$numprocs
	2058	printf "\| $spalte1$spalte2 \| \n"
	2059	fi
	2060	if [[ -n $tasks_per_node ]]
	2061	then
	2062	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2063	printf "\| $spalte1$spalte2 \| \n"
	2064	fi
	2065	if [[ $threads_per_task != 1 ]]
	2066	then
	2067	spalte1="threads per task:"; spalte2="$threads_per_task"
	2068	printf "\| $spalte1$spalte2 \| \n"
	2069	fi
	2070	printf "\| \| \n"
	2071	if [[ $do_compile = true ]]
	2072	then
[82]	2073	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2074	printf "\| $spalte1$spalte2 \| \n"
[82]	2075	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2076	while [[ "$zeile" != "" ]]
	2077	do
	2078	spalte1=""
	2079	spalte2=$zeile
	2080	printf "\| $spalte1$spalte2 \| \n"
	2081	zeile=$(echo "$zeile" \| cut -c41-)
	2082	done
	2083
[82]	2084	spalte1=compiler-options:; spalte2="$fopts"
[1]	2085	printf "\| $spalte1$spalte2 \| \n"
[82]	2086	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2087	while [[ "$zeile" != "" ]]
	2088	do
	2089	spalte1=""
	2090	spalte2=$zeile
	2091	printf "\| $spalte1$spalte2 \| \n"
	2092	zeile=$(echo "$zeile" \| cut -c41-)
	2093	done
	2094
[82]	2095	spalte1=linker-options:; spalte2=$lopts
[1]	2096	printf "\| $spalte1$spalte2 \| \n"
[82]	2097	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2098	while [[ "$zeile" != "" ]]
	2099	do
	2100	spalte1=""
	2101	spalte2=$zeile
	2102	printf "\| $spalte1$spalte2 \| \n"
	2103	zeile=$(echo "$zeile" \| cut -c41-)
	2104	done
	2105
	2106	spalte1="main program":; spalte2=$mainprog
	2107	printf "\| $spalte1$spalte2 \| \n"
	2108	else
	2109	spalte1=executable:; spalte2=$executable
	2110	printf "\| $spalte1$spalte2 \| \n"
	2111	fi
	2112	printf "\| \| \n"
	2113	spalte1="base name of files":; spalte2=$fname
	2114	printf "\| $spalte1$spalte2 \| \n"
	2115	if [[ $fname != $afname ]]
	2116	then
	2117	spalte1="base name of input files":; spalte2=$afname
	2118	printf "\| $spalte1$spalte2 \| \n"
	2119	fi
	2120	spalte1="INPUT control list":; spalte2=$input_list
	2121	printf "\| $spalte1$spalte2 \| \n"
	2122	spalte1="OUTPUT control list":; spalte2=$output_list
	2123	printf "\| $spalte1$spalte2 \| \n"
	2124
	2125	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2126	then
	2127	spalte1="memory demand / PE":; spalte2="$memory MB"
	2128	printf "\| $spalte1$spalte2 \| \n"
	2129	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2130	printf "\| $spalte1$spalte2 \| \n"
	2131	fi
	2132
	2133	if [[ $do_compile = true ]]
	2134	then
	2135	printf "\| \| \n"
	2136	printf "\| Files to be compiled: \| \n"
	2137	zeile=$source_list
	2138	while [[ "$zeile" != "" ]]
	2139	do
	2140	spalte3=$zeile
	2141	printf "\| $spalte3 \| \n"
	2142	zeile=$(echo "$zeile" \| cut -c61-)
	2143	done
	2144	fi
	2145	printf "#--------------------------------------------------------------#"
	2146
	2147
	2148
	2149	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2150	if [[ $do_trace = true ]]
	2151	then
	2152	(( i = 0 ))
	2153	while (( i < iin ))
	2154	do
	2155	(( i = i + 1 ))
	2156	if (( i == 1 ))
	2157	then
	2158	printf "\n\n >>> INPUT-file assignments:\n"
	2159	fi
	2160	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2161	done
	2162	(( i = 0 ))
	2163	while (( i < iout ))
	2164	do
	2165	(( i = i + 1 ))
	2166	if (( i == 1 ))
	2167	then
	2168	printf "\n\n >>> OUTPUT-file assignments:\n"
	2169	fi
	2170	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2171	done
	2172	(( i = 0 ))
	2173	while (( i < iic ))
	2174	do
	2175	(( i = i + 1 ))
	2176	if (( i == 1 ))
	2177	then
	2178	printf "\n\n >>> INPUT-commands:\n"
	2179	fi
	2180	printf "\n ${in_command[$i]}"
	2181	done
	2182	(( i = 0 ))
	2183	while (( i < ioc ))
	2184	do
	2185	(( i = i + 1 ))
	2186	if (( i == 1 ))
	2187	then
	2188	printf "\n\n >>> OUTPUT-commands:\n"
	2189	fi
	2190	printf "\n ${out_command[$i]}"
	2191	done
	2192	fi
	2193
	2194
	2195	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2196	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2197	then
	2198	antwort=dummy
	2199	printf "\n\n"
	2200	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2201	do
	2202	printf " >>> everything o.k. (y/n) ? "
	2203	read antwort
	2204	done
	2205	if [[ $antwort = n \|\| $antwort = N ]]
	2206	then
	2207	locat=user_abort; (( iec = 0 )); exit
	2208	fi
	2209	if [[ $do_batch = true ]]
	2210	then
	2211	printf " >>> batch-job will be created and submitted"
	2212	else
	2213	if [[ $local_compile = false ]]
	2214	then
	2215	printf " >>> MRUN will now continue to execute on this machine"
	2216	else
	2217	printf " >>> a test compilation will now be carried out on this machine"
	2218	fi
	2219	fi
	2220	fi
	2221
	2222
	2223
	2224
	2225	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2226	# CHENDE AKTIONEN DURCHGEFUEHRT
	2227	if [[ $do_batch = false ]]
	2228	then
	2229
	2230
	2231	# TEMPORAEREN KATALOG ERZEUGEN
	2232	mkdir -p $TEMPDIR
	2233	chmod go+rx $TEMPDIR
	2234	tmpcreate=true
	2235
	2236
	2237	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2238	# TEMPORAERES VERZEICHNIS KOPIEREN
	2239	if [[ $do_compile = true ]]
	2240	then
	2241
	2242	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2243	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2244	if [[ $localhost = nech ]]
	2245	then
	2246	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2247	if mkdir -p $TEMPDIR_COMPILE
	2248	then
	2249	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2250	printf "\n is generated as temporary directory for cross compiling\n"
	2251	else
	2252	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2253	printf "\n needed for cross compilation failed"
	2254	locat=compile
	2255	exit
	2256	fi
	2257	else
	2258	TEMPDIR_COMPILE=$TEMPDIR
	2259	fi
	2260
	2261
[82]	2262	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2263	line=""
	2264	grep "%depository_path" $config_file > tmp_mrun
	2265	while read line
	2266	do
	2267	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2268	then
	2269	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2270	then
[82]	2271	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2272	fi
[82]	2273	fi
	2274	done < tmp_mrun
[1]	2275
[82]	2276	line=""
	2277	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2278	while read line
	2279	do
	2280	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2281	then
[211]	2282	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2283	then
	2284	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2285	fi
[1]	2286	fi
[82]	2287	done < tmp_mrun
[1]	2288
[82]	2289	if [[ "$local_depository_path" = "" ]]
	2290	then
	2291	if [[ "$global_depository_path" != "" ]]
[1]	2292	then
[82]	2293	local_depository_path=$global_depository_path
[1]	2294	else
[82]	2295	printf "\n\n +++ no depository path found in configuration file"
	2296	printf "\n for local host \"$localhost\" "
	2297	printf "\n please set \"\%depository_path\" in configuration file\n"
	2298	locat=config_file; exit
[1]	2299	fi
[82]	2300	fi
	2301	eval local_depository_path=$local_depository_path
[215]	2302	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2303	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2304
[215]	2305
[82]	2306	basename=`print $mainprog \| cut -f1 -d"."`
	2307	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2308	if [[ ! -f $make_depository ]]
	2309	then
	2310	printf "\n"
	2311	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2312	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2313	else
	2314	cp $make_depository $TEMPDIR_COMPILE
[1]	2315	cd $TEMPDIR_COMPILE
[82]	2316	tar -xf $make_depository > /dev/null 2>&1
[1]	2317	cd - > /dev/null
	2318	fi
[82]	2319
	2320	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2321
	2322	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2323	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2324	# MAKEFILE EINTRAGEN
[211]	2325	# cd $TEMPDIR_COMPILE
	2326	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2327	# if [[ "$interface_file" != "" ]]
	2328	# then
	2329	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2330	# mv Makefile Makefile_old
	2331	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2332	# fi
	2333	# cd - > /dev/null
[1]	2334	else
	2335	cp $executable ${TEMPDIR}/a.out
	2336	fi
	2337
	2338
	2339	# WECHSEL IN TEMPORAEREN KATALOG
	2340	cd $TEMPDIR
	2341	printf "\n *** changed to temporary directory: $TEMPDIR"
	2342
	2343
	2344	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2345	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2346	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2347	# ERMITTELN
	2348	(( i = 0 ))
	2349	while (( i < iout ))
	2350	do
	2351	(( i = i + 1 ))
	2352	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2353	then
	2354	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2355	else
	2356	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2357	fi
	2358	done
	2359
	2360
	2361	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2362	if [[ $do_compile = true ]]
	2363	then
	2364
	2365
	2366	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2367	printf "\n\n\n *** compilation starts \n$striche\n"
	2368	printf " *** compilation with make using following options:\n"
[211]	2369	printf " make depository: $make_depository"
[82]	2370	printf " compilername: $compiler_name\n"
	2371	printf " options: $fopts\n"
	2372	printf " preprocessor-directives: $cpp_options \n"
	2373	printf " linker-options: $lopts \n"
	2374	printf " source code files: $source_list \n"
	2375
	2376	if [[ $localhost = nech ]]
[1]	2377	then
[82]	2378	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2379	cp $TEMPDIR_COMPILE/a.out .
	2380	[[ $? != 0 ]] && compile_error=true
	2381	rm -rf $TEMPDIR_COMPILE
[197]	2382	elif [[ $localhost = lcsgib ]]
	2383	then
[221]	2384	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
	2385	ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2386	[[ ! -f a.out ]] && compile_error=true
	2387	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2388	elif [[ $localhost = lcsgih ]]
	2389	then
[221]	2390	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
	2391	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2392	[[ ! -f a.out ]] && compile_error=true
	2393	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2394	else
[118]	2395	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2396	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2397	fi
[1]	2398
	2399	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2400	then
	2401	printf "\n +++ error occured while compiling or linking"
	2402	locat=compile
[181]	2403
[182]	2404	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2405	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2406	# then
[181]	2407	exit
[197]	2408	# else
	2409	# locat=normal
	2410	# fi
[1]	2411	else
	2412	printf "$striche\n *** compilation finished \n"
	2413	fi
	2414	fi
	2415
	2416
	2417	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2418	if [[ $local_compile = true ]]
	2419	then
	2420	cd $HOME
	2421	rm -rf $TEMPDIR
	2422	locat=local_compile; exit
	2423	fi
	2424
	2425
	2426	# BEREITSTELLEN DER INPUT-DATEIEN
	2427	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2428	(( i = 0 ))
	2429	while (( i < iin ))
	2430	do
	2431	(( i = i + 1 ))
	2432	if (( i == 1 ))
	2433	then
	2434	printf "\n\n *** providing INPUT-files:\n$striche"
	2435	fi
	2436
	2437
	2438	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2439	if [[ "${transin[$i]}" = unavailable ]]
	2440	then
	2441	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2442	then
	2443	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2444	printf "\n is not available!"
	2445	else
	2446	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2447	printf "\n is not available!"
	2448	fi
	2449	continue
	2450	fi
	2451
	2452	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2453	files_for_pes=false; datentyp=file
	2454	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2455	then
	2456	files_for_pes=true; datentyp=directory
	2457	actionin[$i]=""
	2458	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2459	then
	2460	actionin[$i]=""
	2461	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2462	then
	2463	files_for_pes=true; datentyp=directory
	2464	actionin[$i]="ar"
	2465	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2466	then
	2467	actionin[$i]="ar"
	2468	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2469	then
	2470	files_for_pes=true; datentyp=directory
	2471	actionin[$i]="fl"
	2472	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2473	then
	2474	actionin[$i]="fl"
	2475	fi
	2476
	2477	if [[ $files_for_pes = true ]]
	2478	then
	2479	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2480	else
	2481	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2482	fi
	2483
	2484	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2485	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2486	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2487	# SERVER ZU HOLEN
	2488	if [[ "${actionin[$i]}" = fl ]]
	2489	then
	2490	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2491	if [[ $files_for_pes = false ]]
	2492	then
	2493	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2494	then
	2495	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2496	got_tmp[$i]=true
	2497	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2498	then
	2499	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2500	printf "\n *** trying to use backup copy in \"$WORK\" "
	2501	cp $WORK/${frelin[$i]} ${localin[$i]}
	2502	else
	2503	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2504	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2505	printf "\n *** trying to get copy from archive"
	2506	actionin[$i]=ar
	2507	fi
	2508	else
	2509	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2510	then
	2511	mkdir ${localin[$i]}
[149]	2512	cd $tmp_data_catalog/${frelin[$i]}
	2513	for file in $(ls *)
	2514	do
	2515	ln $file $TEMPDIR/${localin[$i]}
	2516	done
	2517	cd $TEMPDIR
[1]	2518	got_tmp[$i]=true
	2519	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2520	then
	2521	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2522	printf "\n *** trying to use backup copy in \"$WORK\" "
	2523	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2524	else
	2525	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2526	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2527	printf "\n *** trying to get copy from archive"
	2528	actionin[$i]=ar
	2529	fi
	2530	fi
	2531	fi
	2532
	2533
	2534	# DATEI LIEGT AUF ARCHIV-SERVER
	2535	if [[ "${actionin[$i]}" = ar ]]
	2536	then
	2537
	2538	if [[ $files_for_pes = false ]]
	2539	then
	2540	printf "\n file will be restored from archive-system ($archive_system)!"
	2541	else
	2542	printf "\n directory will be restored from archive-system ($archive_system)!"
	2543	fi
	2544
	2545	file_restored=false
	2546
	2547	if [[ $archive_system = asterix ]]
	2548	then
	2549	do_stagein=true
	2550	(( stagein_anz = 0 ))
	2551	while [[ $do_stagein = true ]]
	2552	do
	2553	if [[ $files_for_pes = false ]]
	2554	then
	2555	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2556	else
	2557	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2558	fi
	2559	cat STAGEIN_OUTPUT
	2560	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2561	then
	2562	file_restored=true
	2563	do_stagein=false
	2564	else
	2565	(( stagein_anz = stagein_anz + 1 ))
	2566	if (( stagein_anz == 10 ))
	2567	then
	2568	printf "\n +++ stagein stoped after 10 tries"
	2569	locat=stage
	2570	exit
	2571	fi
	2572	printf "\n +++ restoring from archive failed, trying again:"
	2573	sleep 900
	2574	fi
	2575	done
	2576	elif [[ $archive_system = DMF ]]
	2577	then
	2578	if [[ $files_for_pes = false ]]
	2579	then
	2580	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2581	locat=DMF
	2582	exit
	2583	else
	2584	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2585	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2586	file_restored=true
	2587	fi
	2588	elif [[ $archive_system = tivoli ]]
	2589	then
	2590	if [[ $files_for_pes = false ]]
	2591	then
	2592	if [[ $localhost = ibmh ]]
	2593	then
	2594	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2595	else
	2596	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2597	fi
	2598	else
	2599	(( inode = 0 ))
	2600	while (( inode < nodes ))
	2601	do
	2602	if [[ $localhost = ibmh ]]
	2603	then
	2604	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2605	else
	2606	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2607	fi
	2608	(( inode = inode + 1 ))
	2609	done
	2610	fi
	2611	file_restored=true
	2612	elif [[ $archive_system = ut ]]
	2613	then
	2614	if [[ $files_for_pes = false ]]
	2615	then
	2616	cp $UT/${frelin[$i]} .
	2617	else
	2618	(( inode = 0 ))
	2619	while (( inode < nodes ))
	2620	do
	2621	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2622	(( inode = inode + 1 ))
	2623	done
	2624	fi
	2625	file_restored=true
	2626	else
	2627	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2628	locat=rearchive
	2629	exit
	2630	fi
	2631
	2632	if [[ $file_restored = true ]]
	2633	then
	2634
	2635	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2636	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2637	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2638	if [[ $files_for_pes = false ]]
	2639	then
	2640	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2641	else
	2642	mkdir $tmp_data_catalog/${frelin[$i]}
	2643	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2644	fi
	2645	got_tmp[$i]=true
	2646
	2647	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2648	mv ${frelin[$i]} ${localin[$i]}
	2649
	2650	fi
	2651	fi
	2652
	2653
	2654	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2655	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2656	then
	2657
	2658	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2659	then
	2660
	2661	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2662	printf "\n file will be provided for $numprocs processors"
	2663	mkdir ${localin[$i]}
	2664	ival=$numprocs
	2665	(( ii = 0 ))
	2666	while (( ii <= ival-1 ))
	2667	do
	2668	if (( ii < 10 ))
	2669	then
	2670	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2671	elif (( ii < 100 ))
	2672	then
	2673	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2674	elif (( ii < 1000 ))
	2675	then
	2676	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2677	else
	2678	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2679	fi
	2680	(( ii = ii + 1 ))
	2681	done
	2682
	2683	else
	2684
	2685	if [[ $files_for_pes = true ]]
	2686	then
	2687
	2688	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2689	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2690	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2691	# PER MOVE UMBENANNT WERDEN
	2692	printf "\n providing $numprocs files for the respective processors"
	2693	mkdir ${localin[$i]}
[183]	2694	if [[ $link_local_input = true ]]
	2695	then
	2696	printf " using ln -f\n"
	2697	cd ${absnamein[$i]}
	2698	for file in $(ls *)
	2699	do
	2700	ln -f $file ${localin[$i]}
	2701	done
	2702	cd $TEMPDIR
	2703	fi
	2704	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2705	if [[ ! -f "${localin[$i]}/_0000" ]]
	2706	then
	2707	if [[ $link_local_input = true ]]
	2708	then
	2709	printf " ln failed for .../_0000, using cp...\n"
	2710	fi
	2711	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2712	fi
[1]	2713
	2714	else
	2715	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2716	if [[ $link_local_input = true ]]
	2717	then
	2718	printf " using ln -f\n"
	2719	ln -f ${absnamein[$i]} ${localin[$i]}
	2720	fi
	2721	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2722	if [[ ! -f "${localin[$i]}" ]]
	2723	then
	2724	if [[ $link_local_input = true ]]
	2725	then
	2726	printf " ln failed, using cp...\n"
	2727	fi
	2728	cp ${absnamein[$i]} ${localin[$i]}
	2729	fi
[1]	2730	fi
	2731	fi
	2732	fi
	2733
	2734	done
	2735	if (( i != 0 ))
	2736	then
	2737	printf "\n$striche\n *** all INPUT-files provided \n"
	2738	fi
	2739
	2740
	2741	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2742	# LESEN VON PALM)
	2743	cat > ENVPAR << %%END%%
	2744	&envpar run_identifier = '$fname', host = '$localhost',
	2745	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[75]	2746	maximum_cpu_time_allowed = ${cpumax}.,
	2747	revision = '$global_revision' /
[1]	2748
	2749	%%END%%
	2750
	2751
	2752	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2753	(( i = 0 ))
	2754	while (( i < iic ))
	2755	do
	2756	(( i = i + 1 ))
	2757	if (( i == 1 ))
	2758	then
	2759	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2760	fi
	2761	printf "\n >>> ${in_command[$i]}"
	2762	eval ${in_command[$i]}
	2763	if (( i == iic ))
	2764	then
	2765	printf "\n$striche\n"
	2766	fi
	2767	done
	2768
	2769
	2770	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2771	cpurest=${cpumax}.
	2772
	2773
	2774	# PROGRAMMSTART
	2775	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2776	PATH=$PATH:$TEMPDIR
	2777
	2778	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2779	then
	2780	if [[ "$ENVIRONMENT" = BATCH ]]
	2781	then
[211]	2782	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2783	then
	2784	printf "\n +++ debug is allowed in interactive mode only"
	2785	locat=debug
	2786	exit
	2787	fi
[1]	2788	fi
[5]	2789	if [[ $localhost = decalpha ]]
[1]	2790	then
	2791	dxladebug a.out
	2792	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2793	then
	2794
	2795	# SETUP THE IBM MPI ENVIRONMENT
	2796	export MP_SHARED_MEMORY=yes
	2797	export AIXTHREADS_SCOPE=S
	2798	export OMP_NUM_THREADS=$threads_per_task
	2799	export AUTHSTATE=files
	2800	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2801
	2802	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2803	export MP_ADAPTER_USE=shared
	2804	export MP_CPU_USE=multiple
	2805	export MP_TIMEOUT=1200
	2806
	2807	unset MP_TASK_AFFINITY
	2808
	2809	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2810	#(( ii = 1 ))
	2811	#while (( ii <= $numprocs ))
	2812	#do
	2813	# echo $localhost_realname >> hostfile
	2814	# (( ii = ii + 1 ))
	2815	#done
	2816	#export MP_HOSTFILE=hostfile
	2817
	2818	if [[ "$LOADLBATCH" = yes ]]
	2819	then
	2820	totalview poe a.out $ROPTS
	2821	else
	2822	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2823	export TVDSVRLAUNCHCMD=ssh
	2824	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2825	fi
[211]	2826	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2827	then
	2828	# CURRENTLY NO DEBUGGER ON LCSGI
	2829	if [[ $run_coupled_model = true ]]
	2830	then
	2831	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2832	locat=debug
	2833	exit
[223]	2834	else
	2835	echo "no_coupling" > runfile_atmos
[211]	2836	fi
	2837	(( ii = $numprocs / $threads_per_task ))
	2838	export OMP_NUM_THREADS=$threads_per_task
	2839	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2840	if [[ $threads_per_task != 1 ]]
	2841	then
	2842	printf "\n threads per task: $threads_per_task"
	2843	fi
	2844	printf "\n\n"
[223]	2845	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2846	then
	2847	# export MPI_LAUNCH_TIMEOUT=360
	2848	if [[ "$totalview" = true ]]
	2849	then
	2850	printf "\n running totalview debugger"
	2851	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2852	else
	2853	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2854	fi
	2855	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2856	then
	2857	# ulimit -s 300000 # A too large stack size causes problems
	2858	# export MV2_NUM_PORTS=2
	2859	# export MV2_CPU_MAPPING=0:1:2:3
	2860	mpiexec ./a.out $ROPTS < runfile_atmos
	2861	fi
[1]	2862	else
	2863	printf "\n +++ no debug available on \"$localhost\" "
	2864	printf "\n or not implemented in mrun so far"
	2865	locat=debug
	2866	exit
	2867	fi
	2868	else
	2869	if [[ -n $numprocs ]]
	2870	then
	2871
	2872	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2873	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2874	then
	2875	# SETUP THE IBM MPI ENVIRONMENT
	2876	export MP_SHARED_MEMORY=yes
	2877	export AIXTHREAD_SCOPE=S
	2878	export OMP_NUM_THREADS=$threads_per_task
	2879	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2880	export AUTHSTATE=files
	2881	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2882	# export MP_PRINTENV=yes
	2883
	2884	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2885	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2886	export MP_WAIT_MODE=poll
	2887	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2888	# export MP_EAGER_LIMIT=65535
	2889
	2890	# # TESTWEISE FUER TURBOMPI (JAN 05)
	2891	# export MPJ_MTAB=128
	2892	# export MPJ_ALLTOALL=1
	2893	# export MPJ_ALLTOALLV=1
	2894
	2895	if [[ "$LOADLBATCH" = yes ]]
	2896	then
	2897	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2898	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	2899	then
[102]	2900	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	2901	else
[102]	2902	poe ./a.out $ROPTS
[1]	2903	fi
	2904	else
	2905	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	2906	then
[102]	2907	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	2908	elif [[ $localhost = ibmy ]]
	2909	then
	2910	if [[ -f $hostfile ]]
	2911	then
	2912	cp $hostfile hostfile
	2913	else
	2914	(( ii = 1 ))
	2915	while (( ii <= $numprocs ))
	2916	do
	2917	echo $localhost_realname >> hostfile
	2918	(( ii = ii + 1 ))
	2919	done
	2920	fi
	2921	export MP_HOSTFILE=hostfile
[102]	2922	./a.out -procs $tasks_per_node $ROPTS
[1]	2923	else
	2924	if [[ "$host_file" = "" ]]
	2925	then
	2926	printf "\n +++ no hostfile given in configuration file"
	2927	locat=config_file
	2928	exit
	2929	else
	2930	eval host_file=$host_file
	2931	fi
	2932	export MP_HOSTFILE=$host_file
[102]	2933	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	2934	fi
	2935	fi
	2936	elif [[ $host = nech \|\| $host = neck ]]
	2937	then
	2938	(( ii = nodes ))
	2939	if [[ $ii = 1 ]]
	2940	then
	2941	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	2942	export MPIPROGINF=YES
[61]	2943	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	2944	echo "*** execution on single node with mpirun"
[102]	2945	mpirun -np $numprocs ./a.out $ROPTS
[1]	2946	else
	2947	(( i = 0 ))
	2948	while (( i < ii ))
	2949	do
	2950	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	2951	(( i = i + 1 ))
	2952	done
	2953
	2954	echo "#!/bin/sh" > mpi_exec_shell
	2955	echo " " >> mpi_exec_shell
	2956	echo "set -u" >> mpi_exec_shell
	2957	echo "F_ERRCNT=0" >> mpi_exec_shell
	2958	echo "MPIPROGINV=YES" >> mpi_exec_shell
	2959	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	2960	echo "cpurest=$cpurest" >> mpi_exec_shell
	2961	echo "fname=$fname" >> mpi_exec_shell
	2962	echo "localhost=$localhost" >> mpi_exec_shell
	2963	echo "return_addres=$return_addres" >> mpi_exec_shell
	2964	echo "return_username=$return_username" >> mpi_exec_shell
	2965	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	2966	echo "write_binary=$write_binary" >> mpi_exec_shell
	2967	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	2968	echo " " >> mpi_exec_shell
	2969	echo "export F_ERRCNT" >> mpi_exec_shell
	2970	echo "export MPIPROGINV" >> mpi_exec_shell
	2971	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	2972	echo "export cpurest" >> mpi_exec_shell
	2973	echo "export fname" >> mpi_exec_shell
	2974	echo "export localhost" >> mpi_exec_shell
	2975	echo "export return_addres" >> mpi_exec_shell
	2976	echo "export return_username" >> mpi_exec_shell
	2977	echo "export tasks_per_node" >> mpi_exec_shell
	2978	echo "export write_binary" >> mpi_exec_shell
	2979	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	2980	echo " " >> mpi_exec_shell
[102]	2981	echo "exec ./a.out" >> mpi_exec_shell
[1]	2982
	2983	chmod u+x mpi_exec_shell
	2984	export MPIPROGINF=YES
	2985	mpirun -f multinode_config &
	2986	wait
	2987
	2988	fi
[82]	2989	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	2990	then
	2991
	2992	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	2993	# DOES NOT EXIST
[179]	2994	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	2995	then
[179]	2996	if [[ -f $hostfile ]]
	2997	then
	2998	cp $hostfile hostfile
	2999	else
	3000	(( ii = 1 ))
	3001	while (( ii <= $numprocs / $threads_per_task ))
	3002	do
	3003	echo $localhost_realname >> hostfile
	3004	(( ii = ii + 1 ))
	3005	done
	3006	fi
	3007	eval zeile=\"`head -n $ii hostfile`\"
	3008	printf "\n *** running on: $zeile"
[1]	3009	fi
[179]	3010
[1]	3011	(( ii = $numprocs / $threads_per_task ))
	3012	export OMP_NUM_THREADS=$threads_per_task
[179]	3013	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3014	if [[ $threads_per_task != 1 ]]
	3015	then
	3016	printf "\n threads per task: $threads_per_task"
	3017	fi
[102]	3018	if [[ $run_coupled_model = false ]]
[1]	3019	then
[223]	3020	echo "no_coupling" > runfile_atmos
[102]	3021	printf "\n\n"
[179]	3022	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3023	then
[221]	3024	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3025	then
	3026	# export MPI_LAUNCH_TIMEOUT=360
[223]	3027	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3028	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3029	then
	3030	# ulimit -s 300000 # A too large stack size causes problems
	3031	# export MV2_NUM_PORTS=2
	3032	# export MV2_CPU_MAPPING=0:1:2:3
[223]	3033	mpiexec ./a.out $ROPTS < runfile_atmos
[221]	3034	fi
[179]	3035	elif [[ $host = lcxt4 ]]
	3036	then
[223]	3037	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3038	else
[223]	3039	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3040	fi
[1]	3041	else
[164]	3042
[206]	3043	# currently there is no full MPI-2 support on ICE and XT4
	3044	(( iia = $numprocs_atmos / $threads_per_task ))
	3045	(( iio = $numprocs_ocean / $threads_per_task ))
	3046	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3047	printf "\n using $coupled_mode coupling"
[102]	3048	printf "\n\n"
[164]	3049
[206]	3050	if [[ $coupled_mode = "mpi2" ]]
[164]	3051	then
[206]	3052	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3053	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3054	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3055	then
[197]	3056
[221]	3057	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3058	then
	3059	# export MPI_LAUNCH_TIMEOUT=360
	3060	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3061	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3062	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3063	then
	3064	# ulimit -s 300000 # A too large stack size causes problems
	3065	# export MV2_NUM_PORTS=2
	3066	# export MV2_CPU_MAPPING=0:1:2:3
	3067	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3068	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3069	fi
[197]	3070
[206]	3071	elif [[ $host = lcxt4 ]]
	3072	then
[197]	3073
[206]	3074	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3075	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3076
	3077	else
	3078	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3079	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3080	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3081	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3082	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3083	fi
	3084	wait
	3085
[164]	3086	else
	3087
[206]	3088	echo "coupled_run $iia $iio" > runfile_atmos
	3089	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3090	then
	3091
[221]	3092	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3093	then
	3094	# export MPI_LAUNCH_TIMEOUT=360
	3095	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3096	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3097	then
	3098	# ulimit -s 300000 # A too large stack size causes problems
	3099	# export MV2_NUM_PORTS=2
	3100	# export MV2_CPU_MAPPING=0:1:2:3
	3101	mpiexec ./a.out $ROPTS < runfile_atmos
	3102	fi
[206]	3103
	3104	elif [[ $host = lcxt4 ]]
	3105	then
	3106
	3107	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3108
	3109	fi
	3110	wait
[164]	3111	fi
[102]	3112
	3113	# if [[ $scirocco = true ]]
	3114	# then
	3115	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3116	# else
	3117	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3118	# fi
[206]	3119	fi
[1]	3120	elif [[ $host = decalpha ]]
	3121	then
[102]	3122	dmpirun -np $numprocs a.out $ROPTS
[1]	3123	elif [[ $host = lctit ]]
	3124	then
	3125	export runfile=runfile.$kennung
	3126
	3127	echo "cd $PWD" > $runfile
	3128	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3129	echo "export cpurest=$cpurest" >> $runfile
	3130	echo "export fname=$fname" >> $runfile
	3131	echo "export localhost=$localhost" >> $runfile
	3132	echo "export return_addres=$return_addres" >> $runfile
	3133	echo "export return_username=$return_username" >> $runfile
	3134	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3135	echo "export write_binary=$write_binary" >> $runfile
	3136	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3137	echo "./a.out" >> $runfile
	3138	chmod u+x $runfile
	3139
	3140	if [[ "$QUEUE" = interactive ]]
	3141	then
[102]	3142	mpirun -np $numprocs a.out $ROPTS
[1]	3143	else
[127]	3144	(( mem_tsubame = $memory / 1024.0 ))
	3145	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3146	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[126]	3147	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3148	fi
	3149
	3150	rm $runfile
	3151	else
[102]	3152	mpprun -n $numprocs a.out $ROPTS
[1]	3153	fi
	3154	[[ $? != 0 ]] && execution_error=true
	3155
	3156
	3157	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3158	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3159	then
	3160	apprentice
	3161	fi
	3162	else
[102]	3163	a.out $ROPTS
[1]	3164	fi
	3165	fi
	3166	if [[ $? != 0 \|\| $execution_error = true ]]
	3167	then
	3168
	3169	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3170	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3171	printf "\n +++ runtime error occured"
	3172	locat=execution
	3173	exit
	3174	else
[102]	3175	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3176	printf "\n$striche\n *** execution finished \n"
	3177	fi
	3178
	3179
	3180
	3181	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3182	(( i = 0 ))
	3183	while (( i < ioc ))
	3184	do
	3185	(( i = i + 1 ))
	3186	if (( i == 1 ))
	3187	then
	3188	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3189	fi
	3190	printf "\n >>> ${out_command[$i]}"
	3191	eval ${out_command[$i]}
	3192	if (( i == ioc ))
	3193	then
	3194	printf "\n$striche\n"
	3195	fi
	3196	done
	3197
	3198
	3199	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3200	if [[ $do_trace = true ]]
	3201	then
	3202	printf "\n\n"
	3203	ls -al
	3204	fi
	3205
	3206
	3207
	3208	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3209	(( i = 0 ))
	3210	while (( i < iout ))
	3211	do
	3212	(( i = i + 1 ))
	3213	if (( i == 1 ))
	3214	then
	3215	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3216	fi
	3217
	3218	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3219	files_for_pes=false; filetyp=file
	3220	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3221	then
	3222	files_for_pes=true; filetyp=directory
	3223	actionout[$i]=""
	3224	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3225	then
	3226	actionout[$i]=""
	3227	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3228	then
	3229	files_for_pes=true; filetyp=directory
	3230	actionout[$i]="ar"
	3231	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3232	then
	3233	actionout[$i]="ar"
	3234	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3235	then
	3236	files_for_pes=true; filetyp=directory
	3237	actionout[$i]="fl"
	3238	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3239	then
	3240	actionout[$i]="fl"
	3241	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3242	then
	3243	files_for_pes=true; filetyp=directory
	3244	actionout[$i]="tr"
	3245	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3246	then
	3247	actionout[$i]="tr"
	3248	fi
	3249
	3250	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3251	then
	3252	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
	3253	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
	3254	then
	3255	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3256	else
	3257
	3258
	3259	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3260	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3261	# REMOTE-RECHNUNGEN
	3262	if [[ "${actionout[$i]}" = tr ]]
	3263	then
	3264	if [[ $localhost != $fromhost ]]
	3265	then
	3266	if [[ $files_for_pes = false ]]
	3267	then
	3268	cps=""
	3269	cst=""
	3270	else
	3271	cps=-c
	3272	cst="/"
	3273	fi
	3274	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3275	then
	3276
	3277	# TRANSFER IN EIGENSTAENDIGEM JOB
	3278	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3279	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3280	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3281	if [[ $files_for_pes = false ]]
	3282	then
	3283	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3284	else
	3285	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3286	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3287	fi
	3288
	3289	echo "set -x" > transfer_${localout[$i]}
	3290	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3291
	3292	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3293	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3294	printf "\n or higher cycle\n"
	3295	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3296
[1]	3297	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3298
	3299	if [[ $localhost = nech ]]
	3300	then
[82]	3301	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3302	else
	3303	if [[ "$LOGNAME" = b323013 ]]
	3304	then
[164]	3305	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3306	else
[164]	3307	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3308	fi
	3309	fi
	3310
	3311	else
	3312
	3313	# TRANSFER INNERHALB DIESES JOBS
	3314	transfer_failed=false
[82]	3315	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3316	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3317	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3318	[[ $? != 0 ]] && transfer_failed=true
[1]	3319
	3320	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3321	# LOKALER MASCHINE ANLEGEN
	3322	if [[ $transfer_failed = true ]]
	3323	then
	3324	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3325	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3326
	3327	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3328	# ANLEGEN.
	3329	eval local_catalog=${pathout[$i]}
	3330	if [[ ! -d $local_catalog ]]
	3331	then
	3332	printf " *** local directory does not exist. Trying to create:\n"
	3333	printf " $local_catalog \n"
	3334	mkdir -p $local_catalog
	3335	fi
	3336	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3337	transfer_problems=true
	3338	fi
	3339	fi
	3340	else
	3341
	3342	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3343	actionout[$i]=""
	3344	fi
	3345	fi
	3346
	3347
	3348	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3349	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3350	# REMOTE-RECHNUNGEN
	3351	if [[ "${actionout[$i]}" = tra ]]
	3352	then
	3353	if [[ $localhost != $fromhost ]]
	3354	then
	3355	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3356	then
	3357
	3358	# TRANSFER IN EIGENSTAENDIGEM JOB
	3359	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3360	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3361	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3362	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3363
	3364	echo "set -x" > transfer_${localout[$i]}
	3365	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3366
	3367	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3368	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3369	printf "\n or higher cycle\n"
	3370	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3371
[1]	3372	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3373
	3374	if [[ $localhost = nech ]]
	3375	then
[82]	3376	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3377	else
	3378	if [[ $LOGNAME = b323013 ]]
	3379	then
[164]	3380	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3381	else
[164]	3382	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3383	fi
	3384	fi
	3385
	3386	else
	3387
	3388	# TRANSFER INNERHALB DIESES JOBS
	3389	transfer_failed=false
[82]	3390	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3391	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3392	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3393	[[ $? != 0 ]] && transfer_failed=true
[1]	3394
	3395	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3396	# LOKALER MASCHINE ANLEGEN
	3397	if [[ $transfer_failed = true ]]
	3398	then
	3399	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3400	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3401
	3402	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3403	# ANLEGEN
	3404	eval local_catalog=${pathout[$i]}
	3405	if [[ ! -d $local_catalog ]]
	3406	then
	3407	printf " *** local directory does not exist. Trying to create:\n"
	3408	printf " $local_catalog \n"
	3409	mkdir -p $local_catalog
	3410	fi
	3411
	3412	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3413	transfer_problems=true
	3414	fi
	3415	fi
	3416	else
	3417
	3418	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3419	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3420	actionout[$i]=a
	3421	fi
	3422	fi
	3423
	3424
	3425	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3426	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3427	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3428	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3429	if [[ "${actionout[$i]}" = fl ]]
	3430	then
	3431	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3432	chmod g+rx $tmp_data_catalog
	3433	if [[ $files_for_pes = false ]]
	3434	then
	3435	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3436	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3437	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3438	else
	3439	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3440	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3441	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3442	cd ${localout[$i]}
	3443	for file in $(ls *)
	3444	do
	3445	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3446	done
	3447	cd $TEMPDIR
[1]	3448	fi
	3449
	3450
	3451	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3452	if [[ $store_on_archive_system = true ]]
	3453	then
	3454
	3455	if [[ $archive_system = asterix ]]
	3456	then
	3457	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3458	if [[ $files_for_pes = false ]]
	3459	then
	3460	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3461	else
	3462	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3463	fi
	3464	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3465	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3466	echo "then" >> archive_${frelout[$i]}
	3467	echo " do_stageout=false" >> archive_${frelout[$i]}
	3468	echo "else" >> archive_${frelout[$i]}
	3469	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3470	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3471	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3472	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3473	if [[ $files_for_pes = false ]]
	3474	then
	3475	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3476	else
	3477	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3478	fi
	3479	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3480	echo "fi" >> archive_${frelout[$i]}
	3481	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3482	elif [[ $archive_system = DMF ]]
	3483	then
	3484	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3485	if [[ $files_for_pes = false ]]
	3486	then
	3487	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3488	locat=DMF
	3489	exit
	3490	else
	3491	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3492	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3493	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3494	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3495	fi
	3496	elif [[ $archive_system = tivoli ]]
	3497	then
	3498	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3499	if [[ $files_for_pes = false ]]
	3500	then
	3501	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3502	echo "set -x" >> archive_${frelout[$i]}
	3503	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3504	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3505	else
	3506
	3507	echo "set -x" >> archive_${frelout[$i]}
	3508	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3509	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3510	cd $tmp_data_catalog
	3511	all_files=`ls -1 ${frelout[$i]}/*`
	3512	cd - > /dev/null
	3513	(( inode = 0 ))
	3514	(( tp1 = tasks_per_node + 1 ))
	3515	while (( inode < nodes ))
	3516	do
	3517	# echo "*** all_files = \"$all_files\" "
	3518	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3519	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3520	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3521	# echo "*** files = \"$files\" "
	3522	# echo "*** all_files = \"$all_files\" "
	3523	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3524	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3525	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3526	(( inode = inode + 1 ))
	3527	done
	3528	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3529	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3530	fi
	3531	elif [[ $archive_system = ut ]]
	3532	then
	3533	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3534	if [[ $files_for_pes = false ]]
	3535	then
	3536	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3537	echo "set -x" >> archive_${frelout[$i]}
	3538	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3539	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3540	else
	3541
	3542	echo "set -x" >> archive_${frelout[$i]}
	3543	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3544	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3545	cd $tmp_data_catalog
	3546	all_files=`ls -1 ${frelout[$i]}/*`
	3547	cd - > /dev/null
	3548	(( inode = 0 ))
	3549	(( tp1 = tasks_per_node + 1 ))
	3550	while (( inode < nodes ))
	3551	do
	3552	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3553	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3554	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3555	(( inode = inode + 1 ))
	3556	done
	3557	fi
	3558	elif [[ $archive_system = none ]]
	3559	then
	3560	printf " +++ archiving on $localhost not available!\n"
	3561	fi
	3562
	3563	if [[ $archive_system != none ]]
	3564	then
	3565	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3566	then
[164]	3567	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3568	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3569	elif [[ $localhost = nech ]]
	3570	then
[82]	3571	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3572	fi
	3573	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3574	fi
	3575	else
	3576	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3577	fi
	3578
	3579
	3580	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3581	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3582	if [[ $files_for_pes = false ]]
	3583	then
	3584	cat /dev/null > ${pathout[$i]}
	3585	else
	3586	mkdir -p ${pathout[$i]}
	3587	fi
	3588
	3589	fi
	3590
	3591
	3592	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3593	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3594	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3595	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3596	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3597	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3598	if [[ "${actionout[$i]}" = ar ]]
	3599	then
	3600	if [[ $files_for_pes = false ]]
	3601	then
	3602	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3603	printf "\n ${pathout[$i]}"
	3604	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3605	else
	3606	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3607	printf "\n ${pathout[$i]}"
	3608	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3609	fi
	3610	mv ${localout[$i]} ${frelout[$i]}
	3611
	3612	file_saved=false
	3613
	3614	if [[ $archive_system = asterix ]]
	3615	then
	3616	do_stageout=true
	3617	(( stageout_anz = 0 ))
	3618	while [[ $do_stageout = true ]]
	3619	do
	3620	if [[ $files_for_pes = false ]]
	3621	then
	3622	stageout ${frelout[$i]} > STAGE_OUTPUT
	3623	else
	3624	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3625	fi
	3626	cat STAGE_OUTPUT
	3627	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3628	then
	3629	file_saved=true
	3630	do_stageout=false
	3631	else
	3632	if [[ $files_for_pes = false ]]
	3633	then
	3634	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3635	else
	3636	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3637	fi
	3638	(( stageout_anz = stageout_anz + 1 ))
	3639	if (( stageout_anz == 10 ))
	3640	then
	3641	printf "\n +++ stoped after 10 unsuccessful tries!"
	3642	archive_save=false
	3643	do_stageout=false
	3644	else
	3645	printf "\n *** new try to store on archive after 15 min:"
	3646	sleep 900
	3647	fi
	3648	fi
	3649	done
	3650	elif [[ $archive_system = DMF ]]
	3651	then
	3652	if [[ $files_for_pes = false ]]
	3653	then
	3654	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3655	locat=DMF
	3656	exit
	3657	else
	3658	rm -rf $ARCHIVE/${frelout[$i]}
	3659	cp -r ${frelout[$i]} $ARCHIVE
	3660	fi
	3661	file_saved=true
	3662	elif [[ $archive_system = tivoli ]]
	3663	then
	3664	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3665	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3666	# GELEGT WERDEN
	3667	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3668	chmod g+rx $tmp_data_catalog
	3669	if [[ $files_for_pes = false ]]
	3670	then
	3671	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3672	else
	3673	mkdir $tmp_data_catalog/${frelout[$i]}
	3674	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3675	fi
	3676
	3677	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3678	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3679	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3680	if [[ $files_for_pes = false ]]
	3681	then
	3682	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3683	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3684	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3685	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3686	else
	3687	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3688	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3689	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3690	fi
	3691
[164]	3692	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3693	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3694	file_saved=true
	3695
	3696	elif [[ $archive_system = ut ]]
	3697	then
	3698	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3699	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3700	# GELEGT WERDEN
	3701	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3702	chmod g+rx $tmp_data_catalog
	3703	if [[ $files_for_pes = false ]]
	3704	then
	3705	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3706	else
	3707	mkdir $tmp_data_catalog/${frelout[$i]}
	3708	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3709	fi
	3710
	3711	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3712	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3713	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3714	if [[ $files_for_pes = false ]]
	3715	then
	3716	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3717	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3718	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3719	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3720	else
	3721	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3722	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3723	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3724	fi
	3725
[82]	3726	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3727	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3728	file_saved=true
	3729
	3730	else
	3731	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3732	archive_save=false
	3733	fi
	3734	if [[ $file_saved = true ]]
	3735	then
	3736	if [[ $files_for_pes = false ]]
	3737	then
	3738	cat /dev/null > ${pathout[$i]}
	3739	else
	3740	mkdir -p ${pathout[$i]}
	3741	fi
	3742	fi
	3743	fi
	3744
	3745	# APPEND AUF LOKALER MASCHINE
	3746	if [[ "${actionout[$i]}" = "a" ]]
	3747	then
	3748	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3749	cat ${localout[$i]} >> ${pathout[$i]}
	3750	fi
	3751
	3752	# KOPIEREN AUF LOKALER MASCHINE
	3753	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3754	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3755	then
	3756
	3757	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3758	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3759	then
	3760	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3761	if [[ $link_local_output = true ]]
	3762	then
	3763	printf " using ln -f\n"
	3764	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3765	fi
	3766	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3767	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3768	then
	3769	if [[ $link_local_output = true ]]
	3770	then
	3771	printf " ln failed, using cp...\n"
	3772	fi
	3773	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3774	fi
[1]	3775	else
	3776	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3777	if [[ $link_local_output = true ]]
	3778	then
	3779	printf " using ln -f\n"
	3780	ln -f ${localout[$i]} ${pathout[$i]}
	3781	fi
	3782	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3783	if [[ ! -f "${pathout[$i]}" ]]
	3784	then
	3785	if [[ $link_local_output = true ]]
	3786	then
	3787	printf " ln failed, using cp...\n"
	3788	fi
	3789	cp ${localout[$i]} ${pathout[$i]}
	3790	fi
[1]	3791	fi
	3792
	3793	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3794	then
	3795
	3796	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3797	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3798	# WIRD DANN KOPIERT
	3799	# PER MOVE UMBENANNT WERDEN
	3800	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3801	if [[ $link_local_output = true ]]
	3802	then
	3803	printf " using ln -f\n"
	3804	mkdir ${pathout[$i]}
	3805	cd ${localout[$i]}
	3806	for file in $(ls *)
	3807	do
	3808	ln -f $file ${pathout[$i]}
	3809	done
	3810	cd $TEMPDIR
	3811	fi
	3812	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	3813	if [[ ! -f "${pathout[$i]}/_0000" ]]
	3814	then
	3815	if [[ $link_local_output = true ]]
	3816	then
	3817	printf " ln failed for .../_0000, using cp...\n"
	3818	fi
	3819	cp -r ${localout[$i]} ${pathout[$i]}
	3820	fi
[1]	3821
	3822	fi
	3823	fi
	3824	done
	3825	if (( i != 0 ))
	3826	then
	3827	if [[ $transfer_problems = true ]]
	3828	then
	3829	printf "\n$striche\n *** OUTPUT-files saved"
	3830	printf "\n +++ WARNING: some data transfers failed! \n"
	3831	else
	3832	printf "\n$striche\n *** all OUTPUT-files saved \n"
	3833	fi
	3834	fi
	3835
	3836
	3837	# EVENTUELL FOLGEJOB STARTEN
	3838	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	3839	if [[ -f CONTINUE_RUN ]]
	3840	then
	3841
	3842	if [[ $archive_save = true ]]
	3843	then
	3844
	3845	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	3846	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	3847	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	3848	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	3849	# HANDEN
	3850	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	3851	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	3852	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	3853	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	3854	then
	3855	mc=`echo $mc \| sed 's/#/f/g'`
	3856	fi
	3857
	3858
	3859	# JOB STARTEN
	3860	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	3861	echo " $mc"
	3862	printf "\n$striche\n"
	3863	if [[ $localhost != $fromhost ]]
	3864	then
	3865
[204]	3866	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	3867	then
	3868	echo "*** ssh will be used to initiate restart-runs!"
	3869	echo " return_addres=\"$return_addres\" "
	3870	echo " return_username=\"$return_username\" "
	3871	if [[ $return_addres = 172.20.25.41 ]]
	3872	then
	3873	# WORKAROUND AUF SCIROCCO AM TIT
[33]	3874	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	3875	else
[33]	3876	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	3877	fi
	3878	else
	3879	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	3880	locat=restart; exit
	3881	fi
	3882
	3883	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	3884	# DER AKTUELLE JOB ENDET
	3885	sleep 30
	3886
	3887	else
	3888
	3889	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	3890	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	3891	cd $LOCAL_PWD
[108]	3892	if [[ $localhost = lcfimm ]]
	3893	then
	3894	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	3895	else
	3896	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	3897	fi
[1]	3898	cd - > /dev/null
	3899	fi
	3900	printf "\n$striche\n *** restart-run initiated \n"
	3901
	3902
	3903	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	3904	# GEHOLT WORDEN SIND, LOESCHEN
	3905	(( i = 0 ))
	3906	while (( i < iin ))
	3907	do
	3908	(( i = i + 1 ))
	3909	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	3910	then
	3911	rm -r $tmp_data_catalog/${frelin[$i]}
	3912	fi
	3913	done
	3914
	3915	else
	3916
	3917	printf "\n +++ no restart-run possible, since errors occured"
	3918	printf "\n during the archive process"
	3919	fi
	3920
	3921	fi
	3922
	3923
	3924
	3925	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
	3926	if [[ "$email_notification" != "" ]]
	3927	then
	3928
	3929	if [[ $localhost != $fromhost ]]
	3930	then
	3931	if [[ -f CONTINUE_RUN ]]
	3932	then
	3933	echo "PALM restart run necessary" > email_text
	3934	echo "description header of actual run:" >> email_text
	3935	cat CONTINUE_RUN >> email_text
	3936	echo "mrun-command to restart:" >> email_text
	3937	echo "$mc" >> email_text
	3938	else
	3939	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	3940	fi
	3941	mail $email_notification < email_text
	3942	printf "\n *** email notification sent to \"$email_notification\" "
	3943	fi
	3944	fi
	3945
	3946
	3947
	3948	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	3949	cd $HOME
	3950	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	3951
	3952	else
	3953
	3954
	3955	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	3956	# CHENDE AKTIONEN DURCHGEFUEHRT
	3957
	3958	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	3959	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	3960	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	3961	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	3962	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	3963	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	3964	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	3965	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	3966	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	3967	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	3968	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	3969	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	3970	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	3971	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	3972	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	3973	if [[ $use_openmp = true ]]
	3974	then
	3975	mrun_com=${mrun_com}" -O"
	3976	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	3977	else
	3978	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	3979	fi
	3980	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	3981	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	3982	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	3983	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	3984	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[206]	3985	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	3986	if [[ $do_remote = true ]]
	3987	then
	3988	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	3989	fi
	3990
	3991
	3992	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	3993	jobfile=jobfile.$RANDOM
	3994
	3995
	3996	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	3997	echo "mkdir $TEMPDIR" >> $jobfile
	3998	echo "cd $TEMPDIR" >> $jobfile
	3999
	4000
	4001	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4002	if [[ $do_trace = true ]]
	4003	then
	4004	echo "set -x" >> $jobfile
	4005	else
	4006	echo "set +vx" >> $jobfile
	4007	fi
	4008
	4009
[191]	4010	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4011	# DATEI FUER DEN JOB
	4012	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4013	then
	4014
[191]	4015	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4016	# KOPIEREN
	4017	if [[ $restart_run != true ]]
	4018	then
	4019	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4020	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4021	fi
[1]	4022
[191]	4023	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4024	echo "set -x" >> $jobfile
	4025	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4026	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4027
[193]	4028	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4029	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4030	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4031	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4032	echo "execute_mrun=true" >> $jobfile
	4033	echo " " >> $jobfile
	4034
[191]	4035	else
	4036
	4037	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4038	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4039	if [[ $do_compile = true ]]
	4040	then
	4041
	4042	source_catalog=SOURCES_FOR_RUN_$fname
	4043
	4044	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4045	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4046	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4047	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4048	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4049	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4050
	4051	for filename in $source_list
	4052	do
	4053	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4054	echo "cat > $filename << \"%END%\"" >> $jobfile
	4055	cat $source_catalog/$filename >> $jobfile
	4056	echo " " >> $jobfile
	4057	echo "%END%" >> $jobfile
	4058	echo " " >> $jobfile
	4059	done
	4060
[1]	4061	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4062	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4063	cat $source_catalog/Makefile >> $jobfile
[1]	4064	echo " " >> $jobfile
	4065	echo "%END%" >> $jobfile
	4066	echo " " >> $jobfile
	4067
[191]	4068	echo "cd - > /dev/null" >> $jobfile
[1]	4069
[191]	4070	fi
[1]	4071
	4072
[191]	4073	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4074	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4075	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4076	cat $config_file >> $jobfile
	4077	echo "%END%" >> $jobfile
	4078	echo " " >> $jobfile
[1]	4079
	4080
[191]	4081	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4082	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4083	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4084	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4085	echo "%END%" >> $jobfile
	4086	if [[ $host = lctit ]]
	4087	then
	4088	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4089	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4090	fi
	4091	echo "chmod u+x $mrun_script_name" >> $jobfile
	4092	echo "execute_mrun=true" >> $jobfile
	4093	echo " " >> $jobfile
[1]	4094
	4095	fi
	4096
[191]	4097
[1]	4098	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4099	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4100	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4101	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4102	if [[ $do_remote = true ]]
	4103	then
	4104	(( i = 0 ))
	4105	while (( i < iin ))
	4106	do
	4107	(( i = i + 1 ))
	4108	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4109	if [[ "${transin[$i]}" = job ]]
	4110	then
	4111	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4112	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4113	echo " " >> $jobfile
	4114	echo "%END%" >> $jobfile
	4115	else
[82]	4116	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4117	fi
	4118
	4119	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4120	echo "if [[ \$? = 1 ]]" >> $jobfile
	4121	echo "then" >> $jobfile
	4122	echo " echo \" \" " >> $jobfile
	4123	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4124	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4125	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4126	echo " execute_mrun=false" >> $jobfile
	4127	echo "fi" >> $jobfile
	4128	done
	4129	fi
	4130
	4131	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4132	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4133	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4134	echo "export LOCAL_PWD" >> $jobfile
	4135
	4136	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4137	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4138	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4139
[66]	4140	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4141	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4142	then
	4143	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4144	fi
[1]	4145
	4146	# MRUN AUF ZIELRECHNER AUFRUFEN
	4147	echo "set -x" >> $jobfile
	4148	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4149
	4150	echo 'ls -al; echo `pwd`' >> $jobfile
	4151	echo "cd \$HOME" >> $jobfile
	4152	echo "rm -rf $TEMPDIR" >> $jobfile
	4153
	4154
	4155
	4156
	4157	# JOB PER SUBJOB STARTEN
	4158	if [[ $silent = false ]]
	4159	then
	4160	printf "\n "
	4161	else
	4162	printf "\n\n"
	4163	fi
	4164
[164]	4165	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile
[1]	4166	rm -rf $jobfile
	4167
	4168
	4169	fi # ENDE REMOTE-TEIL
	4170
	4171
	4172
	4173	# ENDE DER PROZEDUR

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