[71] | 1 | #!/bin/ksh |
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[66] | 2 | # mrun - Plot-Shellskript |
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[169] | 3 | # $Id: mrun 206 2008-10-13 14:59:11Z raasch $ |
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[1] | 4 | |
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| 5 | # Prozedur zum Starten von Modellaeufen |
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| 6 | |
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| 7 | # letzte Aenderung: |
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| 8 | # 03/03/94 - Siggi - Entwicklungsbeginn |
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| 9 | # 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0) |
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| 10 | # 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein- |
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| 11 | # zelne Variable exportiert. Dies ist noetig, weil an- |
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| 12 | # sonsten irgendein Speicher ueberlaeuft und von mrun |
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| 13 | # aufgerufene Programme (z.B. stageout) mit Fehlern |
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| 14 | # abbrechen (too many arguments) |
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| 15 | # 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt |
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| 16 | # defaultmaessig im RRZN-Profile eingeschaltet |
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| 17 | # 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht |
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| 18 | # wegfallen |
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| 19 | # 25/04/00 - Siggi - Version 1.5 |
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| 20 | # remote_addres und remote_user in return_addres bzw. |
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| 21 | # return_username umbenannt, return_username wird dem |
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| 22 | # mrun-Aufruf im Job ueber Option -U mitgegeben. |
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| 23 | # Neue Variable remote_username, die beim interaktiven |
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| 24 | # mrun-Aufruf zwingend ueber die neue Option -u oder |
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| 25 | # in der Konfigurationsdatei angegeben werden muss. |
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| 26 | # 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt, |
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| 27 | # Version 1.7 |
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| 28 | # 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich |
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| 29 | # 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf |
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| 30 | # IBM gesetzt, um Record-Laenge der NAMELIST-Dateien, |
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| 31 | # zu bestimmen; Praeprozessoroptionen haben nun alle |
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| 32 | # die Form -Dtext=text, weil auf IBM sonst text durch |
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| 33 | # die leere Zeichenkette ersetzt wird |
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| 34 | # 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm |
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| 35 | # 07/01/04 - Siggi - additional preprocessor directive for ibm included |
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| 36 | # (-D$OMP=OMP) in order to avoid problems with |
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| 37 | # OMP_NUM_THREADS |
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| 38 | # 04/01/05 - Siggi - archiving on hanni and berni is done in separate |
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| 39 | # tar files, one for each node used |
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| 40 | # 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated |
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| 41 | # 09/01/05 - Siggi - workaround for getting the IP address on gfdl3 |
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| 42 | # 17/01/05 - Siggi - job for data transfer to local machine now within |
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| 43 | # job class c1 (HLRN) |
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| 44 | # 27/01/05 - Siggi - IP address workaround for gfdl3 removed |
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| 45 | # 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the |
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| 46 | # base filename and cycle number |
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| 47 | # 16/02/05 - Gerald - hababai validated |
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| 48 | # 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT) |
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| 49 | # 29/03/05 - Marcus - berni*-en0 validated |
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| 50 | # 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored |
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| 51 | # 24/04/05 - Siggi - netcdf support on lcmuk |
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| 52 | # 25/04/05 - Siggi - netcdf support on gfld3 (decalpha) |
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| 53 | # 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle |
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| 54 | # number) can now be used within interactive runs |
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| 55 | # 12/05/05 - Siggi - netcdf support on ibm |
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| 56 | # 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed |
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| 57 | # 18/05/05 - Siggi - netcdf support on nec |
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| 58 | # 24/05/05 - Siggi - netcdf support on ibms |
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| 59 | # 14/06/05 - Siggi - sleep interval after submit of restart job increased |
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| 60 | # to 30 seconds |
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| 61 | # 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_ |
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| 62 | # PATH is temporarily set) |
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| 63 | # 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it |
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| 64 | # caused warnings in the job protocol |
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| 65 | # 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3) |
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| 66 | # 25/10/05 - Siggi - error in listing files for getting the cycle number |
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| 67 | # removed |
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| 68 | # 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs |
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| 69 | # realized by file attribute trpe |
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| 70 | # 28/10/05 - Siggi - if existing, the file extension is output in case |
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| 71 | # of missing input file - no job abort in case of |
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| 72 | # missing input files with file extensions |
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| 73 | # (preliminary solution) |
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| 74 | # 31/10/05 - Siggi - data transfer from nech now within seperate job |
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| 75 | # 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb |
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| 76 | # 07/12/05 - Siggi - gallego and elephanta admitted |
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| 77 | # 30/12/05 - Siggi - gfdl5 (ibmy) admitted |
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| 78 | # 10/01/06 - Siggi - cpp directive for NetCDF 64bit support |
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| 79 | # 20/01/06 - Siggi - cpp directive for ibmy |
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| 80 | # 09/02/06 - Siggi - ibmy admitted for batch mode |
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| 81 | # 13/04/06 - Siggi - ostria admitted |
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| 82 | # 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O) |
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| 83 | # 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for |
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| 84 | # optimization of OpenMP runs (option stacksize is |
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| 85 | # necessary for large gridpoint numbers because |
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| 86 | # otherwise a segmentation fault occurs) |
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| 87 | # 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted |
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| 88 | # 21/08/06 - Siggi - standard mrun path on scirocco is as on bora |
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| 89 | # 23/08/06 - Siggi - netcdf support for scirocco (notebook) |
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| 90 | # 20/09/06 - Marcus - add DVRP library on nech |
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| 91 | # 24/10/06 - Siggi - Environment variables for PALM steering are written |
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| 92 | # on local NAMELIST file ENVPAR |
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| 93 | # 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1 |
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| 94 | # 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10 |
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| 95 | # 06/02/07 - Siggi - add DVRP library on lcmuk |
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| 96 | # 07/02/07 - Siggi - revision of source code handling, source code is |
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| 97 | # now expected in directory given by source_path and |
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| 98 | # not in the current working directory, source code |
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| 99 | # files provided in add_source_path are allways |
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| 100 | # compiled, source code to be compiled is allways |
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| 101 | # sampled in SOURCES_FOR_RUN_$fname which is a |
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| 102 | # subdirectory of the current working directory, |
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[5] | 103 | # -s TEST changed to -s WRITE_PERMIT or -s WP, |
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[1] | 104 | # adapted for RIAM (neck) |
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[5] | 105 | # bugfix for cycle number of output file (extout) |
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| 106 | # all hpmuk-related code removed |
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[14] | 107 | # 14/02/07 - Siggi - dvrp support for neck added |
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[21] | 108 | # 28/02/07 - Siggi - empty lines in configuration file are accepted |
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[26] | 109 | # mrun_path replaced by PALM_BIN, |
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| 110 | # all machines are calling interpret_config.x |
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[66] | 111 | # 14/03/07 - Siggi - fimm admitted, revision number added to terminal |
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| 112 | # output |
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[69] | 113 | # 16/03/07 - Siggi - adjustments for lctit |
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[78] | 114 | # 29/03/07 - Siggi - global revision transfered to batch job by new |
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| 115 | # option -G |
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[82] | 116 | # 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options |
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| 117 | # + netcdf/dvrp-options are read from configuration |
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| 118 | # file, host identifier (local_host) is read from |
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| 119 | # config file, code related to ftp filetransfer |
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| 120 | # removed (incl. option -f) |
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[97] | 121 | # 19/06/07 - Siggi - time limit for cdata jobs increased |
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[102] | 122 | # 25/07/07 - Siggi - two sets of executables can be started on lcmuk, |
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| 123 | # if new option -Y (coupling) is given, |
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| 124 | # output of executables to aout_output removed, |
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| 125 | # messages are immediately written to stdout instead |
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[108] | 126 | # 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm |
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| 127 | # 09/08/07 - Marcus - workaround on lcfimm to propagate environment |
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| 128 | # variables out to the nodes in coupled mode -disabled- |
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| 129 | # 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm |
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[109] | 130 | # 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate |
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| 131 | # environment variables out to the nodes in coupled mode |
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[118] | 132 | # 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's |
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| 133 | # suggestions |
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[122] | 134 | # 19/10/07 - Marcus - further adjustments for lctit: add new optional |
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| 135 | # argument -g group_number, admit all sla* node_usage |
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| 136 | # queues |
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[129] | 137 | # 30/10/07 - Marcus - further adjustments for queues on lctit |
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[149] | 138 | # 14/02/08 - Bjoern - link of restart files with long file name possible |
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| 139 | # 28/02/08 - Marcus - If environment variable link_local_output is set to |
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| 140 | # true, mrun tries "ln -f" on local output and resorts |
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| 141 | # to "cp" or "cp -r" on error |
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[164] | 142 | # 15/04/08 - Siggi - argument -c introduced to most of the subjob calls, |
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| 143 | # which allows the user to choose his own job catalog |
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| 144 | # by setting job_catalog in the configuration file |
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| 145 | # (default is ~/job_queue), |
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[172] | 146 | # workaround for mpiexec with -env option, |
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[164] | 147 | # adjustments for lcxt4 (Bergen Center for Computational |
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| 148 | # Science) |
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[183] | 149 | # 22/05/08 - Marcus - If environment variable link_local_input is set to |
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| 150 | # true, mrun tries "ln -f" on local input and resorts |
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| 151 | # to "cp" or "cp -r" on error |
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[180] | 152 | # 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far) |
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[179] | 153 | # 14/07/08 - Siggi - adjustments for lcsgih |
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[188] | 154 | # 08/08/08 - Marcus - typo removed in lcxt4 branch |
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[204] | 155 | # 17/09/08 - Siggi - restart mechanism adjusted for lcsgi |
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[206] | 156 | # 02/10/09 - BjornM - argument "-Y" modified, adjustments for coupled runs |
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[1] | 157 | |
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| 158 | # VARIABLENVEREINBARUNGEN + DEFAULTWERTE |
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| 159 | |
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| 160 | set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT |
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| 161 | # NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM) |
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| 162 | set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN |
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| 163 | |
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| 164 | AddFilenames="" |
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| 165 | additional_conditions="" |
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| 166 | add_source_path="" |
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| 167 | afname="" |
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| 168 | archive_save=true |
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| 169 | archive_system=none |
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| 170 | compiler_name="" |
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| 171 | cond1="" |
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| 172 | cond2="" |
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| 173 | config_file=.mrun.config |
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[206] | 174 | coupled_dist="" |
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| 175 | coupled_mode="mpi1" |
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[1] | 176 | cpp_opts="" |
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[82] | 177 | cpp_options="" |
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[1] | 178 | cpumax=0 |
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| 179 | cpurest=0 |
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| 180 | delete_temporary_catalog=true |
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| 181 | do_batch=false |
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| 182 | do_compile=true |
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| 183 | do_remote=false |
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| 184 | do_stagein=true |
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| 185 | do_stageout=true |
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| 186 | do_trace=false |
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| 187 | email_notification="" |
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| 188 | exclude="" |
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| 189 | executable="" |
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| 190 | execution_error=false |
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[67] | 191 | fimm=false |
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[1] | 192 | fname=test |
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| 193 | fromhost="" |
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[78] | 194 | global_revision="" |
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[122] | 195 | group_number=none |
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[1] | 196 | host="" |
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| 197 | host_file="" |
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| 198 | hp="" |
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| 199 | ignore_archive_error=false |
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| 200 | input_list="" |
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| 201 | interpreted_config_file="" |
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[164] | 202 | job_catalog="~/job_queue" |
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[1] | 203 | job_on_file="" |
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| 204 | keep_data_from_previous_run=false |
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[183] | 205 | link_local_input=false |
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[149] | 206 | link_local_output=false |
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[1] | 207 | localhost_realname=$(hostname) |
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| 208 | local_compile=false |
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| 209 | locat=normal |
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| 210 | mainprog="" |
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| 211 | makefile="" |
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| 212 | mc=$0 |
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| 213 | while [[ $(echo $mc | grep -c "/") != 0 ]] |
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| 214 | do |
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| 215 | mc=`echo $mc | cut -f2- -d"/"` |
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| 216 | done |
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| 217 | module_files="" |
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| 218 | mrun_script_name=$mc |
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[82] | 219 | netcdf_inc="" |
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| 220 | netcdf_lib="" |
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[1] | 221 | netcdf_support=false |
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| 222 | node_usage=default |
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| 223 | numprocs="" |
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[206] | 224 | numprocs_atmos=0 |
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| 225 | numprocs_ocean=0 |
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[1] | 226 | OOPT="" |
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| 227 | openmp=false |
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| 228 | output_list="" |
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| 229 | package_list="" |
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| 230 | punkte="..........................................................." |
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| 231 | queue=none |
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| 232 | read_from_config="" |
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[5] | 233 | restart_run=false |
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[146] | 234 | return_addres=$(nslookup `hostname` 2>&1 | grep "Address:" | tail -1 | awk '{print $2}') |
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[1] | 235 | if [[ $return_addres = 130.75.105.158 ]] |
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| 236 | then |
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| 237 | return_addres=172.20.25.41 |
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| 238 | echo "+++ WARNING: return_addres changed to $return_addres !!!!!" |
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| 239 | fi |
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| 240 | # if [[ $return_addres = 210.117.65.1 ]] |
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| 241 | # if [[ $(nslookup `hostname` 2>&1 | grep -c 210.117.65.1) = 1 ]] |
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| 242 | # then |
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| 243 | # [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56 |
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| 244 | # fi |
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| 245 | return_password="" |
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| 246 | return_username=$LOGNAME |
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| 247 | remotecall=false |
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| 248 | remote_username="" |
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[102] | 249 | run_coupled_model=false |
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[1] | 250 | run_mode="" |
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| 251 | scirocco=false |
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| 252 | store_on_archive_system=true |
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| 253 | striche=" ----------------------------------------------------------------------------" |
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| 254 | silent=false |
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| 255 | source_list="" |
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| 256 | source_path=SOURCE |
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| 257 | tasks_per_node="" |
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| 258 | threads_per_task=1 |
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| 259 | tmpcreate=false |
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| 260 | tmp_data_catalog="" |
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| 261 | transfer_problems=false |
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| 262 | usern=$LOGNAME |
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| 263 | working_directory=`pwd` |
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| 264 | TOPT="" |
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| 265 | XOPT="" |
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| 266 | zeit=$( date | cut -c 12-19 ) |
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| 267 | |
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| 268 | typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0 |
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[206] | 269 | typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1 |
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[1] | 270 | |
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[66] | 271 | typeset -R30 calltime |
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[1] | 272 | typeset -L20 spalte1 |
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| 273 | typeset -L40 spalte2 |
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| 274 | typeset -L60 spalte3 |
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| 275 | typeset -L35 string1=`date` |
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| 276 | typeset -L12 string2=$usern |
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| 277 | typeset -L12 string3=$localhost_realname |
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| 278 | typeset -L12 string4 |
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| 279 | typeset -L12 string5 |
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[201] | 280 | typeset -L30 version="MRUN 2.0 Rev$Rev: 206 $" |
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[1] | 281 | |
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| 282 | |
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| 283 | |
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| 284 | # EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN |
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| 285 | export cpurest fname host localhost return_addres return_username remotecall tasks_per_node |
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| 286 | |
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| 287 | # FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI |
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| 288 | # EXPORTIERT WERDEN |
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| 289 | export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost |
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[127] | 290 | export group_number input_list memory numprocs output_list queue run_mode |
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[1] | 291 | |
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| 292 | |
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| 293 | |
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| 294 | # FEHLERBEHANDLUNG |
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| 295 | # BEI EXIT: |
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[83] | 296 | trap 'rm -rf $working_directory/tmp_mrun |
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[69] | 297 | if [[ $locat != localhost ]] |
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[1] | 298 | then |
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[22] | 299 | # if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]] |
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| 300 | # then |
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| 301 | # cat > ${mrun_path}/statistik/mrun_statistik << %STATEND% |
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| 302 | #MRUN-calls on $localhost |
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| 303 | # |
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| 304 | #date and time user localhost remotehost termination mrun-command |
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| 305 | #-------------------------------------------------------------------------------------------------------------------- |
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| 306 | #%STATEND% |
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| 307 | # chmod 666 ${mrun_path}/statistik/mrun_statistik |
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| 308 | # fi |
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| 309 | # |
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| 310 | # # EINTRAG IN DIE STATISTIK-DATEI |
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| 311 | # string4=$host |
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| 312 | # string5=$locat |
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| 313 | # if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]] |
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| 314 | # then |
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| 315 | # if [[ $do_batch = true ]] |
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| 316 | # then |
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| 317 | # printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik |
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| 318 | # else |
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| 319 | # printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik |
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| 320 | # fi |
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| 321 | # fi |
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[69] | 322 | echo " " > /dev/null |
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[1] | 323 | fi |
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| 324 | |
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| 325 | if [[ $locat != normal && $locat != control_c && $locat != local_compile ]] |
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| 326 | then |
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| 327 | |
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| 328 | # EVENTUELLE ERROR-KOMMANDOS ABARBEITEN |
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| 329 | (( i = 0 )) |
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| 330 | while (( i < iec )) |
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| 331 | do |
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| 332 | (( i = i + 1 )) |
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| 333 | printf "\n *** Execution of ERROR-command:\n" |
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| 334 | printf " >>> ${err_command[$i]}\n" |
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| 335 | eval ${err_command[$i]} |
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| 336 | done |
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| 337 | if [[ -n $interpreted_config_file ]] then |
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| 338 | rm -rf $interpreted_config_file |
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| 339 | fi |
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[71] | 340 | if [[ -n .mrun_environment ]] then |
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| 341 | rm -rf .mrun_environment |
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| 342 | fi |
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[1] | 343 | if [[ $tmpcreate = true ]] |
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| 344 | then |
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| 345 | printf "\n *** Contents of \"$TEMPDIR\":\n" |
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| 346 | ls -al; cd |
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| 347 | [[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR |
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| 348 | fi |
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| 349 | if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]] |
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| 350 | then |
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| 351 | rm -rf ~/job_queue/JOBINFO.$QSUB_REQID |
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| 352 | fi |
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| 353 | printf "\n\n+++ MRUN killed \n\n" |
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| 354 | elif [[ $locat != control_c ]] |
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| 355 | then |
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| 356 | printf "\n\n --> all actions finished\n\n" |
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| 357 | printf " Bye, bye $usern !!\n\n" |
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| 358 | fi' exit |
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| 359 | |
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| 360 | |
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| 361 | # BEI TERMINAL-BREAK: |
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[83] | 362 | trap 'rm -rf $working_directory/tmp_mrun |
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[69] | 363 | [[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR) |
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[1] | 364 | if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]] |
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| 365 | then |
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| 366 | rm -rf ~/job_queue/JOBINFO.$QSUB_REQID |
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| 367 | fi |
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| 368 | printf "\n+++ MRUN killed by \"^C\" \n\n" |
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| 369 | locat=control_c |
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| 370 | exit |
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| 371 | ' 2 |
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| 372 | |
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| 373 | |
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[22] | 374 | # CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS |
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| 375 | # BEEN SET |
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| 376 | if [[ "$PALM_BIN" = "" ]] |
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| 377 | then |
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| 378 | printf "\n +++ environment variable PALM_BIN has not been set" |
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| 379 | printf "\n please set it to the directory where the PALM scripts are located" |
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| 380 | locat=palm_bin; exit |
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| 381 | fi |
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[180] | 382 | export PATH=$PALM_BIN:$PATH |
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[22] | 383 | |
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| 384 | |
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[1] | 385 | |
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| 386 | # SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES |
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| 387 | # FUER FOLGEJOBS BENOETIGT WIRD |
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[206] | 388 | while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y: option |
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[1] | 389 | do |
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| 390 | case $option in |
---|
| 391 | (a) afname=$OPTARG;; |
---|
| 392 | (A) store_on_archive_system=false; mc="$mc -A";; |
---|
| 393 | (b) do_batch=true; mc="$mc -b";; |
---|
| 394 | (B) delete_temporary_catalog=false; mc="$mc -B";; |
---|
| 395 | (c) config_file=$OPTARG; mc="$mc -c$OPTARG";; |
---|
[5] | 396 | (C) restart_run=true; mc="$mc -C";; |
---|
[1] | 397 | (d) fname=$OPTARG; mc="$mc -d$OPTARG";; |
---|
| 398 | (D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";; |
---|
[79] | 399 | (F) job_on_file="-D"; mc="$mc -F";; |
---|
[122] | 400 | (g) group_number=$OPTARG; mc="$mc -g$OPTARG";; |
---|
[78] | 401 | (G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";; |
---|
[1] | 402 | (h) host=$OPTARG; mc="$mc -h$OPTARG";; |
---|
| 403 | (H) fromhost=$OPTARG; mc="$mc -H$OPTARG";; |
---|
| 404 | (i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";; |
---|
| 405 | (I) ignore_archive_error=true; mc="$mc -I";; |
---|
| 406 | (k) keep_data_from_previous_run=true; mc="$mc -k";; |
---|
| 407 | (K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";; |
---|
| 408 | (m) memory=$OPTARG; mc="$mc -m$OPTARG";; |
---|
| 409 | (M) makefile=$OPTARG; mc="$mc -M$OPTARG";; |
---|
| 410 | (n) node_usage=$OPTARG; mc="$mc -n$OPTARG";; |
---|
| 411 | (o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";; |
---|
| 412 | (O) use_openmp=true; mc="$mc -O";; |
---|
| 413 | (p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";; |
---|
| 414 | (P) return_password=$OPTARG; mc="$mc -P$OPTARG";; |
---|
| 415 | (q) queue=$OPTARG; mc="$mc -q$OPTARG";; |
---|
| 416 | (r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";; |
---|
| 417 | (R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";; |
---|
| 418 | (s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";; |
---|
| 419 | (S) read_from_config=false; mc="$mc -S";; |
---|
| 420 | (t) cpumax=$OPTARG; mc="$mc -t$OPTARG";; |
---|
| 421 | (T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";; |
---|
| 422 | (u) remote_username=$OPTARG; mc="$mc -u$OPTARG";; |
---|
| 423 | (U) return_username=$OPTARG; mc="$mc -U$OPTARG";; |
---|
| 424 | (v) silent=true; mc="$mc -v";; |
---|
| 425 | (x) do_trace=true;set -x; mc="$mc -x";; |
---|
| 426 | (X) numprocs=$OPTARG; mc="$mc -X$OPTARG";; |
---|
[206] | 427 | (Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";; |
---|
[1] | 428 | (\?) printf "\n +++ unknown option $OPTARG \n" |
---|
| 429 | printf "\n --> type \"$0 ?\" for available options \n" |
---|
| 430 | locat=parameter;exit;; |
---|
| 431 | esac |
---|
| 432 | done |
---|
| 433 | |
---|
| 434 | |
---|
| 435 | # EVTL. POSITIONSPARAMETER EINLESEN |
---|
| 436 | # ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO) |
---|
| 437 | shift OPTIND-1 |
---|
| 438 | |
---|
| 439 | |
---|
| 440 | # KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN |
---|
| 441 | if [[ "$1" = "?" ]] |
---|
| 442 | then |
---|
| 443 | (printf "\n *** mrun can be called as follows:\n" |
---|
[206] | 444 | printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -Y.. <modus>\n" |
---|
[1] | 445 | printf "\n Description of available options:\n" |
---|
| 446 | printf "\n Option Description Default-Value" |
---|
| 447 | printf "\n -a base name of input files equiv. -d" |
---|
| 448 | printf "\n -A no archiving when using file-attribute fl" |
---|
| 449 | printf "\n -b batch-job on local machine ---" |
---|
| 450 | printf "\n -B do not delete temporary directory at end ---" |
---|
| 451 | printf "\n -c configuration file .mrun.config" |
---|
| 452 | printf "\n -d base name of files attached to program test" |
---|
| 453 | printf "\n -D preprocessor(cpp)-directives \"\" " |
---|
| 454 | printf "\n -F create remote job file only ---" |
---|
| 455 | printf "\n -h execution host $localhost_realname" |
---|
| 456 | printf "\n -i INPUT control list \"\" " |
---|
| 457 | printf "\n -I archiving errors of previous batch-jobs" |
---|
| 458 | printf "\n will be ignored" |
---|
| 459 | printf "\n -k keep data from previous run" |
---|
| 460 | printf "\n -K additional conditions for controling" |
---|
| 461 | printf "\n usage of conditional code and" |
---|
| 462 | printf "\n env-variables in configuration file \"\" " |
---|
| 463 | printf "\n -m memory demand in MB (batch-jobs) 0 MB" |
---|
| 464 | printf "\n -M Makefile name Makefile" |
---|
| 465 | printf "\n -n node usage (shared/not_shared) depending on -h" |
---|
| 466 | printf "\n -o OUTPUT control list \"\" " |
---|
| 467 | printf "\n -O use OpenMP ---" |
---|
| 468 | printf "\n -p software package list \"\" " |
---|
| 469 | printf "\n -q queue \"$queue\" " |
---|
| 470 | printf "\n -r run control list (combines -i -o) \"\" " |
---|
| 471 | printf "\n -s filenames of routines to be compiled \"\" " |
---|
| 472 | printf "\n must end with .f, .f90, .F, or .c !" |
---|
| 473 | printf "\n use \"..\" for more than one file and wildcards" |
---|
| 474 | printf "\n -s TEST compiles all files with w-permit" |
---|
| 475 | printf "\n -S config file interpreted by shellscript ---" |
---|
| 476 | printf "\n -t allowed cpu-time in seconds (batch) 0" |
---|
| 477 | printf "\n -T tasks per node depending on -h" |
---|
| 478 | printf "\n -u username on remote machine \"\" " |
---|
| 479 | printf "\n -v no prompt for confirmation ---" |
---|
| 480 | printf "\n -x tracing of mrun for debug purposes ---" |
---|
| 481 | printf "\n -X # of processors (on parallel machines) 1" |
---|
[206] | 482 | printf "\n -Y run coupled model, \"#1 #2\" with" |
---|
| 483 | printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X" |
---|
[1] | 484 | printf "\n " |
---|
| 485 | printf "\n Possible values of positional parameter <modus>:" |
---|
| 486 | printf "\n \"?\" - this outline \n\n") | more |
---|
| 487 | exit |
---|
| 488 | elif [[ "$1" != "" ]] |
---|
| 489 | then |
---|
| 490 | printf "\n +++ positional parameter $1 unknown \n" |
---|
| 491 | locat=parameter; exit |
---|
| 492 | fi |
---|
| 493 | |
---|
| 494 | |
---|
| 495 | |
---|
| 496 | # KURZE STARTMELDUNG |
---|
| 497 | printf "\n*** $version " |
---|
| 498 | printf "\n will be executed. Please wait ..." |
---|
| 499 | |
---|
| 500 | |
---|
[82] | 501 | |
---|
| 502 | # PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN |
---|
| 503 | if [[ ! -f $config_file ]] |
---|
| 504 | then |
---|
| 505 | printf "\n\n +++ configuration file: " |
---|
| 506 | printf "\n $config_file" |
---|
| 507 | printf "\n does not exist" |
---|
| 508 | locat=connect; exit |
---|
| 509 | fi |
---|
| 510 | |
---|
| 511 | |
---|
| 512 | # HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN |
---|
| 513 | line="" |
---|
| 514 | grep "%host_identifier" $config_file > tmp_mrun |
---|
| 515 | while read line |
---|
| 516 | do |
---|
[206] | 517 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] |
---|
[82] | 518 | then |
---|
| 519 | HOSTNAME=`echo $line | cut -d" " -s -f2` |
---|
| 520 | host_identifier=`echo $line | cut -d" " -s -f3` |
---|
[83] | 521 | if [[ $localhost_realname = $HOSTNAME ]] |
---|
[82] | 522 | then |
---|
| 523 | localhost=$host_identifier |
---|
| 524 | break |
---|
| 525 | fi |
---|
| 526 | fi |
---|
| 527 | done < tmp_mrun |
---|
| 528 | |
---|
| 529 | if [[ "$localhost" = "" ]] |
---|
| 530 | then |
---|
| 531 | printf "\n\n +++ no host identifier found in configuration file \"$config_file\"" |
---|
| 532 | printf "\n for local host \"$localhost_realname\"." |
---|
| 533 | printf "\n Please add line" |
---|
| 534 | printf "\n \"\%host_identifier $localhost_realname <identifier>\"" |
---|
| 535 | printf "\n to the configuration file." |
---|
| 536 | locat=localhost; exit |
---|
| 537 | fi |
---|
| 538 | |
---|
| 539 | |
---|
| 540 | # HOSTSPEZIFISCHE VARIABLEN SETZEN |
---|
| 541 | case $localhost_realname in |
---|
| 542 | (breg*-en0|berni*-en0) archive_system=tivoli;; |
---|
| 543 | (cs*) archive_system=ut;; |
---|
| 544 | (fimm.bccs.uib.no) fimm=true;; |
---|
| 545 | (gate|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;; |
---|
| 546 | (hreg*-en0|hanni*-en0) archive_system=tivoli;; |
---|
| 547 | (scirocco) scirocco=true;; |
---|
| 548 | esac |
---|
| 549 | |
---|
| 550 | |
---|
| 551 | |
---|
[1] | 552 | # BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN, |
---|
| 553 | # WENN NICHT VOM BENUTZER ANDERS BESTIMMT |
---|
| 554 | [[ "$afname" = "" ]] && afname=$fname |
---|
| 555 | |
---|
| 556 | |
---|
| 557 | # EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN |
---|
| 558 | if [[ "$run_mode" != "" ]] |
---|
| 559 | then |
---|
| 560 | input_list="$input_list $run_mode" |
---|
| 561 | output_list="$output_list $run_mode" |
---|
| 562 | fi |
---|
| 563 | |
---|
| 564 | |
---|
| 565 | # RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD, |
---|
| 566 | # ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT |
---|
| 567 | # ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS |
---|
| 568 | # STARTET) |
---|
| 569 | if [[ "$fromhost" = "" ]] |
---|
| 570 | then |
---|
| 571 | fromhost=$localhost |
---|
| 572 | fi |
---|
| 573 | |
---|
| 574 | |
---|
| 575 | # PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL |
---|
| 576 | if [[ "$source_list" = LOCAL_COMPILE_TEST ]] |
---|
| 577 | then |
---|
| 578 | source_list=TEST |
---|
| 579 | local_compile=true |
---|
| 580 | host=$localhost |
---|
| 581 | fi |
---|
| 582 | |
---|
| 583 | |
---|
| 584 | # PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL |
---|
| 585 | # WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT. |
---|
| 586 | # WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR, |
---|
| 587 | # DASS EIN BATCH-JOB GESTARTET WERDEN MUSS |
---|
| 588 | if [[ -n $host && "$host" != $localhost ]] |
---|
| 589 | then |
---|
| 590 | do_batch=true |
---|
| 591 | do_remote=true |
---|
| 592 | case $host in |
---|
[206] | 593 | (ibm|ibmb|ibmh|ibms|ibmy|nech|neck|lcsgib|lcsgih|lctit|unics|lcxt4) true;; |
---|
[1] | 594 | (*) printf "\n" |
---|
[83] | 595 | printf "\n +++ sorry: execution of batch jobs on remote host \"$host\"" |
---|
| 596 | printf "\n is not available" |
---|
[1] | 597 | locat=nqs; (( iec = 0 )); exit;; |
---|
| 598 | esac |
---|
| 599 | else |
---|
| 600 | host=$localhost |
---|
| 601 | fi |
---|
| 602 | |
---|
| 603 | |
---|
| 604 | # ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN |
---|
| 605 | if [[ -n $additional_conditions ]] |
---|
| 606 | then |
---|
[69] | 607 | # echo $additional_conditions | cut -d" " -f1-3 | read cond1 cond2 dummy |
---|
| 608 | cond1=`echo $additional_conditions | cut -d" " -f1` |
---|
| 609 | cond2=`echo $additional_conditions | cut -d" " -s -f2` |
---|
| 610 | dummy=`echo $additional_conditions | cut -d" " -s -f3` |
---|
[1] | 611 | if [[ -n $dummy ]] |
---|
| 612 | then |
---|
| 613 | printf "\n +++ more than 2 additional conditions given for Option \"-K\"" |
---|
| 614 | locat=options; exit |
---|
| 615 | fi |
---|
| 616 | fi |
---|
| 617 | |
---|
| 618 | |
---|
[206] | 619 | # KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN |
---|
| 620 | if [[ $run_coupled_model = true ]] |
---|
| 621 | then |
---|
| 622 | |
---|
| 623 | if [[ -n $coupled_dist ]] |
---|
| 624 | then |
---|
| 625 | |
---|
| 626 | numprocs_atmos=`echo $coupled_dist | cut -d" " -s -f1` |
---|
| 627 | numprocs_ocean=`echo $coupled_dist | cut -d" " -s -f2` |
---|
| 628 | |
---|
| 629 | if (( $numprocs_ocean + $numprocs_atmos != $numprocs )) |
---|
| 630 | then |
---|
| 631 | |
---|
| 632 | printf "\n +++ number of processors does not fit to specification by \"-Y\"." |
---|
| 633 | printf "\n PEs (total) : $numprocs" |
---|
| 634 | printf "\n PEs (atmosphere): $numprocs_atmos" |
---|
| 635 | printf "\n PEs (ocean) : $numprocs_ocean" |
---|
| 636 | locat=coupling; exit |
---|
| 637 | |
---|
| 638 | # REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED |
---|
| 639 | # THIS SHOULD BE REMOVED IN FUTURE |
---|
| 640 | elif (( $numprocs_ocean != $numprocs_atmos )) |
---|
| 641 | then |
---|
| 642 | |
---|
| 643 | printf "\n +++ currently only 1:1 topologies are supported" |
---|
| 644 | printf "\n PEs (total) : $numprocs" |
---|
| 645 | printf "\n PEs (atmosphere): $numprocs_atmos" |
---|
| 646 | printf "\n PEs (ocean) : $numprocs_ocean" |
---|
| 647 | (( numprocs_atmos = $numprocs / 2 )) |
---|
| 648 | (( numprocs_ocean = $numprocs / 2 )) |
---|
| 649 | printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean" |
---|
| 650 | |
---|
| 651 | fi |
---|
| 652 | |
---|
| 653 | else |
---|
| 654 | |
---|
| 655 | (( numprocs_ocean = $numprocs / 2 )) |
---|
| 656 | (( numprocs_atmos = $numprocs / 2 )) |
---|
| 657 | |
---|
| 658 | fi |
---|
| 659 | coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"` |
---|
| 660 | |
---|
| 661 | # GET coupled_mode FROM THE CONFIG FILE |
---|
| 662 | line="" |
---|
| 663 | grep "%cpp_options.*-D__mpi2.*$host" $config_file > tmp_mrun |
---|
| 664 | while read line |
---|
| 665 | do |
---|
| 666 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" && ( $(echo $line | cut -d" " -s -f4) = $cond1 || $(echo $line | cut -d" " -s -f4) = $cond2 ) ]] |
---|
| 667 | then |
---|
| 668 | coupled_mode="mpi2" |
---|
| 669 | fi |
---|
| 670 | done < tmp_mrun |
---|
| 671 | |
---|
| 672 | fi |
---|
| 673 | |
---|
| 674 | |
---|
[1] | 675 | # PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE |
---|
| 676 | # ARCHIVIERUNG FEHLGESCHLAGEN IST |
---|
| 677 | if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]] |
---|
| 678 | then |
---|
| 679 | if [[ $ignore_archive_error = false ]] |
---|
| 680 | then |
---|
| 681 | printf "\n +++ data archiving of previous run failed" |
---|
| 682 | printf "\n see directory \~/job_queue on remote machine" |
---|
| 683 | locat=archive; exit |
---|
| 684 | else |
---|
| 685 | printf "\n +++ warning: data archiving in a previous run failed" |
---|
| 686 | printf "\n MRUN continues, trying to get backup copy" |
---|
| 687 | fi |
---|
| 688 | fi |
---|
| 689 | |
---|
| 690 | |
---|
| 691 | |
---|
| 692 | # LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS |
---|
| 693 | # VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN |
---|
| 694 | if [[ "$read_from_config" = false ]] |
---|
| 695 | then |
---|
| 696 | |
---|
| 697 | [[ $silent = false ]] && printf "\n Reading the configuration file... " |
---|
| 698 | while read zeile |
---|
| 699 | do |
---|
| 700 | [[ $silent = false ]] && printf "." |
---|
| 701 | |
---|
| 702 | |
---|
| 703 | # ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE |
---|
| 704 | # ERSETZEN |
---|
| 705 | eval zeile=\"$zeile\" |
---|
| 706 | |
---|
| 707 | |
---|
| 708 | # INTERPRETATION DER ZEILE |
---|
[21] | 709 | if [[ "$(echo $zeile)" = "" ]] |
---|
[1] | 710 | then |
---|
[21] | 711 | # LEERZEILE, KEINE AKTION |
---|
| 712 | continue |
---|
[1] | 713 | |
---|
[21] | 714 | elif [[ "$(echo $zeile | cut -c1)" = "#" ]] |
---|
| 715 | then |
---|
| 716 | |
---|
[1] | 717 | # ZEILE IST KOMMENTARZEILE |
---|
| 718 | true |
---|
| 719 | |
---|
| 720 | elif [[ "$(echo $zeile | cut -c1)" = "%" ]] |
---|
| 721 | then |
---|
| 722 | |
---|
| 723 | # ZEILE DEFINIERT ENVIRONMENT-VARIABLE |
---|
| 724 | zeile=$(echo $zeile | cut -c2-) |
---|
[69] | 725 | # echo $zeile | cut -d" " -f1-5 | read var value for_host for_cond1 for_cond2 |
---|
| 726 | var=`echo $zeile | cut -d" " -f1` |
---|
| 727 | value=`echo $zeile | cut -d" " -s -f2` |
---|
| 728 | for_host=`echo $zeile | cut -d" " -s -f3` |
---|
| 729 | for_cond1=`echo $zeile | cut -d" " -s -f4` |
---|
| 730 | for_cond2=`echo $zeile | cut -d" " -s -f5` |
---|
[1] | 731 | |
---|
| 732 | if [[ "$for_host" = "" || ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) || $(echo "$input_list$output_list"|grep -c "$for_host") != 0 ]] |
---|
| 733 | then |
---|
| 734 | |
---|
| 735 | # BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " " |
---|
| 736 | # ERSETZEN. "::" WIRD DURCH ":" ERSETZT. |
---|
| 737 | value=`echo $value | sed 's/::/%DUM%/g' | sed 's/:/ /g' | sed 's/%DUM%/:/g'` |
---|
| 738 | |
---|
| 739 | |
---|
| 740 | # ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI |
---|
| 741 | # ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE |
---|
| 742 | # ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE |
---|
| 743 | # VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN |
---|
| 744 | # WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER |
---|
| 745 | # KONFIGURATIONSDATEI |
---|
| 746 | if [[ "$(eval echo \$$var)" = "" || "$(eval echo \$$var)" = "0" ]] |
---|
| 747 | then |
---|
| 748 | eval $var=\$value |
---|
| 749 | |
---|
| 750 | # EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN |
---|
| 751 | if [[ $do_trace = true ]] |
---|
| 752 | then |
---|
| 753 | printf "\n*** ENVIRONMENT-VARIABLE $var = $value" |
---|
| 754 | fi |
---|
| 755 | fi |
---|
| 756 | |
---|
| 757 | # WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN |
---|
| 758 | # WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT |
---|
| 759 | # WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR, |
---|
| 760 | # DASS EIN BATCH-JOB GESTARTET WERDEN MUSS |
---|
| 761 | if [[ $var = host ]] |
---|
| 762 | then |
---|
| 763 | if [[ -n $host && "$host" != $localhost ]] |
---|
| 764 | then |
---|
| 765 | do_batch=true |
---|
| 766 | do_remote=true |
---|
| 767 | case $host in |
---|
[206] | 768 | (ibm|ibms|ibmy|lcsgib|lcsgih|lctit|nech|neck|unics|lcxt4) true;; |
---|
[83] | 769 | (*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\"" |
---|
| 770 | printf "\n is not available" |
---|
[1] | 771 | locat=nqs; exit;; |
---|
| 772 | esac |
---|
| 773 | else |
---|
| 774 | host=$localhost |
---|
| 775 | fi |
---|
| 776 | fi |
---|
| 777 | |
---|
| 778 | # VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL |
---|
| 779 | # EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN- |
---|
| 780 | # DEN PROGRAMMEN BENOETIGT WERDEN |
---|
| 781 | export $var |
---|
| 782 | fi |
---|
| 783 | |
---|
| 784 | |
---|
| 785 | |
---|
| 786 | |
---|
| 787 | elif [[ "$(echo $zeile | cut -c1-3)" = "EC:" ]] |
---|
| 788 | then |
---|
| 789 | |
---|
| 790 | # ZEILE DEFINIERT ERROR-KOMMANDO |
---|
| 791 | (( iec = iec + 1 )) |
---|
| 792 | zeile=$(echo $zeile | cut -c4-) |
---|
| 793 | err_command[$iec]="$zeile" |
---|
| 794 | |
---|
| 795 | elif [[ "$(echo $zeile | cut -c1-3)" = "IC:" ]] |
---|
| 796 | then |
---|
| 797 | |
---|
| 798 | # ZEILE DEFINIERT INPUT-KOMMANDO |
---|
| 799 | (( iic = iic + 1 )) |
---|
| 800 | zeile=$(echo $zeile | cut -c4-) |
---|
| 801 | in_command[$iic]="$zeile" |
---|
| 802 | |
---|
| 803 | elif [[ "$(echo $zeile | cut -c1-3)" = "OC:" ]] |
---|
| 804 | then |
---|
| 805 | |
---|
| 806 | # ZEILE DEFINIERT OUTPUT-KOMMANDO |
---|
| 807 | (( ioc = ioc + 1 )) |
---|
| 808 | zeile=$(echo $zeile | cut -c4-) |
---|
| 809 | out_command[$ioc]="$zeile" |
---|
| 810 | |
---|
| 811 | else |
---|
| 812 | |
---|
| 813 | # ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN |
---|
| 814 | # s2a: in/out - Feld |
---|
| 815 | # s2b: loc - Feld (optional) |
---|
| 816 | # s2c: tr/ar - Feld (optional) |
---|
[69] | 817 | # echo $zeile | cut -d" " -f1-2 | read s1 s2 |
---|
| 818 | s1=`echo $zeile | cut -d" " -f1` |
---|
| 819 | s2=`echo $zeile | cut -d" " -s -f2` |
---|
[1] | 820 | s2a=$(echo $s2 | cut -d":" -f1) |
---|
| 821 | if [[ $(echo $s2 | grep -c ":") = 0 ]] |
---|
| 822 | then |
---|
| 823 | s2b="" |
---|
| 824 | s2c="" |
---|
| 825 | else |
---|
[69] | 826 | # echo $s2 | cut -d":" -f2-3 | sed 's/:/ /g' | read s2b s2c |
---|
| 827 | s2b=`echo $s2 | cut -d":" -f2 | sed 's/:/ /g'` |
---|
| 828 | s2c=`echo $s2 | cut -d":" -s -f3 | sed 's/:/ /g'` |
---|
[1] | 829 | fi |
---|
[69] | 830 | # echo $zeile | cut -d" " -f3-6 | read s3 s4 s5 s6 |
---|
| 831 | s3=`echo $zeile | cut -d" " -f3` |
---|
| 832 | s4=`echo $zeile | cut -d" " -s -f4` |
---|
| 833 | s5=`echo $zeile | cut -d" " -s -f5` |
---|
| 834 | s6=`echo $zeile | cut -d" " -s -f6` |
---|
[1] | 835 | |
---|
| 836 | |
---|
| 837 | # ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST |
---|
| 838 | # VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":") |
---|
| 839 | # DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN |
---|
| 840 | # PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR- |
---|
| 841 | # HANDEN SEIN MUSS (D.H. s2b = loc) |
---|
| 842 | IFSALT="$IFS"; IFS="$IFS:" |
---|
| 843 | if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc || "$s2b" = locopt ) ) ]] |
---|
| 844 | then |
---|
| 845 | found=false |
---|
| 846 | for actual in $input_list |
---|
| 847 | do |
---|
| 848 | for formal in $s3 |
---|
| 849 | do |
---|
| 850 | [[ $actual = $formal || "$formal" = "-" ]] && found=true |
---|
| 851 | done |
---|
| 852 | done |
---|
| 853 | if [[ $found = true ]] |
---|
| 854 | then |
---|
| 855 | (( iin = iin + 1 )) |
---|
| 856 | localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c; |
---|
| 857 | typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5; |
---|
| 858 | extin[$iin]=$s6 |
---|
| 859 | fi |
---|
| 860 | elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]] |
---|
| 861 | then |
---|
| 862 | found=false |
---|
| 863 | for actual in $output_list |
---|
| 864 | do |
---|
| 865 | for formal in $s3 |
---|
| 866 | do |
---|
| 867 | [[ $actual = $formal || "$formal" = "-" ]] && found=true |
---|
| 868 | done |
---|
| 869 | done |
---|
| 870 | if [[ $found = true ]] |
---|
| 871 | then |
---|
| 872 | (( iout = iout + 1 )) |
---|
| 873 | localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3; |
---|
| 874 | pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6 |
---|
| 875 | fi |
---|
| 876 | elif [[ "$s2a" != in && "$s2a" != out ]] |
---|
| 877 | then |
---|
| 878 | printf "\n +++ I/O-attribute in configuration file $config_file has the invalid" |
---|
| 879 | printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!" |
---|
| 880 | locat=connect; exit |
---|
| 881 | fi |
---|
| 882 | IFS="$IFSALT" |
---|
| 883 | fi |
---|
| 884 | done < $config_file |
---|
| 885 | |
---|
| 886 | else |
---|
| 887 | |
---|
| 888 | |
---|
| 889 | # INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM |
---|
| 890 | [[ $silent = false ]] && printf "..." |
---|
| 891 | export cond1 cond2 config_file do_remote do_trace input_list localhost output_list |
---|
| 892 | export interpreted_config_file=.icf.$RANDOM |
---|
| 893 | |
---|
| 894 | |
---|
[69] | 895 | |
---|
| 896 | # ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR |
---|
| 897 | # VERFUEGUNG STELLEN |
---|
| 898 | cat > .mrun_environment << %%END%% |
---|
| 899 | &mrun_environment cond1 = '$cond1', cond2 = '$cond2', |
---|
| 900 | config_file = '$config_file', do_remote = '$do_remote', |
---|
| 901 | do_trace = '$do_trace', host = '$host', |
---|
| 902 | input_list = '$input_list', icf = '$interpreted_config_file', |
---|
| 903 | localhost = '$localhost', output_list = '$output_list' / |
---|
| 904 | |
---|
| 905 | %%END%% |
---|
| 906 | |
---|
| 907 | # WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE |
---|
| 908 | # IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN |
---|
| 909 | mrun_memory=$memory |
---|
[127] | 910 | mrun_group_number=$group_number |
---|
[69] | 911 | mrun_cpumax=$cpumax |
---|
| 912 | mrun_numprocs=$numprocs |
---|
| 913 | |
---|
[66] | 914 | if [[ $localhost_realname = "gate" ]] |
---|
| 915 | then |
---|
| 916 | interpret_config_gate.x |
---|
| 917 | else |
---|
| 918 | interpret_config.x |
---|
| 919 | fi |
---|
[71] | 920 | rm .mrun_environment |
---|
[1] | 921 | |
---|
[71] | 922 | |
---|
[1] | 923 | # AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL |
---|
| 924 | chmod u+x $interpreted_config_file |
---|
| 925 | export PATH=$PATH:. |
---|
| 926 | . $interpreted_config_file |
---|
[71] | 927 | rm $interpreted_config_file |
---|
[1] | 928 | |
---|
[71] | 929 | |
---|
[69] | 930 | # OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI |
---|
[71] | 931 | [[ $mrun_memory != 0 ]] && memory=$mrun_memory |
---|
[127] | 932 | [[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number |
---|
[71] | 933 | [[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax |
---|
| 934 | [[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs |
---|
[69] | 935 | |
---|
[1] | 936 | fi |
---|
| 937 | |
---|
| 938 | |
---|
| 939 | # QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI |
---|
| 940 | # BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h |
---|
| 941 | # ANGEGEBENEN REMOTE-RECHNERS SEIN) |
---|
| 942 | # BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT |
---|
| 943 | if [[ "$SOURCES_COMPLETE" = "" ]] |
---|
| 944 | then |
---|
| 945 | |
---|
| 946 | # ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER |
---|
| 947 | # VEREINBART WURDE |
---|
| 948 | source_path="" |
---|
| 949 | line="" |
---|
| 950 | grep "%source_path" $config_file > tmp_mrun |
---|
| 951 | while read line |
---|
| 952 | do |
---|
| 953 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] |
---|
| 954 | then |
---|
| 955 | if [[ "$(echo $line | cut -d" " -f3)" = "" ]] |
---|
| 956 | then |
---|
| 957 | global_source_path=`echo $line | cut -d" " -f2` |
---|
| 958 | fi |
---|
| 959 | fi |
---|
| 960 | done < tmp_mrun |
---|
| 961 | |
---|
| 962 | line="" |
---|
| 963 | found=false |
---|
| 964 | grep " $localhost" $config_file | grep "%source_path" > tmp_mrun |
---|
| 965 | while read line |
---|
| 966 | do |
---|
| 967 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] |
---|
| 968 | then |
---|
| 969 | if [[ $found = true ]] |
---|
| 970 | then |
---|
| 971 | printf "\n\n +++ more than one source path found in configuration file" |
---|
| 972 | printf "\n for local host \"$localhost\" " |
---|
| 973 | locat=source_path; exit |
---|
| 974 | fi |
---|
| 975 | source_path=`echo $line | cut -d" " -f2` |
---|
| 976 | found=true |
---|
| 977 | fi |
---|
| 978 | done < tmp_mrun |
---|
| 979 | rm tmp_mrun |
---|
| 980 | |
---|
| 981 | if [[ "$source_path" = "" ]] |
---|
| 982 | then |
---|
| 983 | if [[ "$global_source_path" != "" ]] |
---|
| 984 | then |
---|
| 985 | source_path=$global_source_path |
---|
| 986 | else |
---|
| 987 | printf "\n\n +++ no source path found in configuration file" |
---|
| 988 | printf "\n for local host \"$localhost\" " |
---|
| 989 | locat=source_path; exit |
---|
| 990 | fi |
---|
| 991 | fi |
---|
| 992 | eval source_path=$source_path |
---|
| 993 | |
---|
| 994 | if [[ ! -d $source_path ]] |
---|
| 995 | then |
---|
| 996 | printf "\n\n +++ source path \"$source_path\" on local host" |
---|
| 997 | printf "\n \"$localhost\" does not exist" |
---|
| 998 | locat=source_path; exit |
---|
| 999 | fi |
---|
| 1000 | |
---|
| 1001 | fi |
---|
| 1002 | |
---|
| 1003 | |
---|
[78] | 1004 | # GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE |
---|
| 1005 | # DURCH OPTION -G MITGETEILT) |
---|
| 1006 | if [[ "$global_revision" = "" ]] |
---|
| 1007 | then |
---|
| 1008 | global_revision=`svnversion $source_path 2>/dev/null` |
---|
| 1009 | global_revision="Rev: $global_revision" |
---|
| 1010 | fi |
---|
[1] | 1011 | |
---|
[78] | 1012 | |
---|
[1] | 1013 | # NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL |
---|
| 1014 | # (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN) |
---|
| 1015 | # WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT. |
---|
| 1016 | # WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR, |
---|
| 1017 | # DASS EIN BATCH-JOB GESTARTET WERDEN MUSS |
---|
| 1018 | if [[ -n $host && "$host" != $localhost ]] |
---|
| 1019 | then |
---|
| 1020 | do_batch=true |
---|
| 1021 | do_remote=true |
---|
| 1022 | case $host in |
---|
[206] | 1023 | (ibm|ibmb|ibmh|ibms|ibmy|lcsgib|lcsgih|lctit|nech|neck|unics|lcxt4) true;; |
---|
[1] | 1024 | (*) printf "\n" |
---|
[83] | 1025 | printf "\n +++ sorry: execution of batch jobs on remote host \"$host\"" |
---|
| 1026 | printf "\n is not available" |
---|
[1] | 1027 | locat=nqs; (( iec = 0 )); exit;; |
---|
| 1028 | esac |
---|
| 1029 | else |
---|
| 1030 | host=$localhost |
---|
| 1031 | fi |
---|
| 1032 | |
---|
| 1033 | |
---|
| 1034 | # PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN |
---|
| 1035 | if [[ "$cond1" = parallel || "$cond2" = parallel ]] |
---|
| 1036 | then |
---|
| 1037 | |
---|
| 1038 | # PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE |
---|
| 1039 | if [[ ! -n $numprocs ]] |
---|
| 1040 | then |
---|
| 1041 | printf "\n" |
---|
| 1042 | printf "\n +++ option \"-K parallel\" requires additional specification" |
---|
| 1043 | printf "\n of the number of processors to be used by" |
---|
| 1044 | printf "\n mrun-option \"-X\" or by environment-variable" |
---|
| 1045 | printf "\n \"numprocs\" in the configuration file" |
---|
| 1046 | locat=numprocs; (( iec = 0 )); exit |
---|
| 1047 | fi |
---|
| 1048 | |
---|
| 1049 | # PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF. |
---|
| 1050 | # DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER |
---|
| 1051 | # GESAMTPROZESSORANZAHL IST |
---|
| 1052 | if [[ $host = nech || $host = neck || $host = ibmh || $host = ibmb || $host = ibms ]] |
---|
| 1053 | then |
---|
| 1054 | [[ "$tasks_per_node" = "" ]] && tasks_per_node=6 |
---|
| 1055 | (( ival = $tasks_per_node )) |
---|
| 1056 | (( pes = numprocs )) |
---|
| 1057 | # if [[ $(echo $package_list | grep -c dvrp_graphics+1PE) = 1 ]] |
---|
| 1058 | # then |
---|
| 1059 | # (( pes = pes - 1 )) |
---|
| 1060 | # fi |
---|
| 1061 | (( ii = pes / ival )) |
---|
| 1062 | if (( pes - ii * ival > 0 )) |
---|
| 1063 | then |
---|
| 1064 | printf "\n" |
---|
| 1065 | printf "\n +++ tasks per node (option \"-T\") must be an integral" |
---|
| 1066 | printf "\n divisor of the total number of processors (option \"-X\")" |
---|
| 1067 | printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\"" |
---|
| 1068 | locat=tasks_per_node; (( iec = 0 )); exit |
---|
| 1069 | fi |
---|
| 1070 | fi |
---|
| 1071 | |
---|
| 1072 | # IBMY HAT NUR EINEN KNOTEN |
---|
| 1073 | if [[ $host = ibmy ]] |
---|
| 1074 | then |
---|
| 1075 | if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]] |
---|
| 1076 | then |
---|
| 1077 | printf "\n" |
---|
| 1078 | printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the" |
---|
| 1079 | printf "\n total number of processors (option \"-X\")" |
---|
| 1080 | printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\"" |
---|
| 1081 | locat=tasks_per_node; (( iec = 0 )); exit |
---|
| 1082 | fi |
---|
| 1083 | fi |
---|
| 1084 | |
---|
| 1085 | # FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS |
---|
| 1086 | # SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN |
---|
| 1087 | if [[ $use_openmp = true ]] |
---|
| 1088 | then |
---|
| 1089 | threads_per_task=$tasks_per_node |
---|
| 1090 | tasks_per_node=1 |
---|
| 1091 | fi |
---|
| 1092 | OOPT="-O $threads_per_task" |
---|
| 1093 | TOPT="-T $tasks_per_node" |
---|
| 1094 | |
---|
| 1095 | # GESAMTZAHL DER KNOTEN BESTIMMEN |
---|
| 1096 | if [[ "$tasks_per_node" != "" ]] |
---|
| 1097 | then |
---|
| 1098 | (( nodes = numprocs / ( tasks_per_node * threads_per_task ) )) |
---|
| 1099 | fi |
---|
| 1100 | |
---|
| 1101 | # PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT |
---|
| 1102 | # SETZEN |
---|
| 1103 | if [[ $node_usage = default ]] |
---|
| 1104 | then |
---|
| 1105 | if [[ $host = ibms ]] |
---|
| 1106 | then |
---|
| 1107 | node_usage=shared |
---|
[118] | 1108 | elif [[ $host = lctit ]] |
---|
| 1109 | then |
---|
[129] | 1110 | node_usage=sla3 |
---|
[181] | 1111 | elif [[ $(echo $host | cut -c1-5) = lcsgi ]] |
---|
| 1112 | then |
---|
| 1113 | node_usage=singlejob |
---|
[1] | 1114 | else |
---|
| 1115 | node_usage=not_shared |
---|
| 1116 | fi |
---|
| 1117 | fi |
---|
[181] | 1118 | |
---|
| 1119 | if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage | cut -c1-3)" != "sla" && $node_usage != novice ]] |
---|
[1] | 1120 | then |
---|
| 1121 | printf "\n" |
---|
| 1122 | printf "\n +++ node usage (option \"-n\") is only allowed to be set" |
---|
| 1123 | printf "\n \"shared\" or \"not_shared\"" |
---|
| 1124 | locat=tasks_per_node; (( iec = 0 )); exit |
---|
| 1125 | fi |
---|
| 1126 | |
---|
| 1127 | fi |
---|
| 1128 | |
---|
| 1129 | # PRUEFEN, OB HOSTFILE EXISTIERT |
---|
| 1130 | if [[ -n $hostfile ]] |
---|
| 1131 | then |
---|
| 1132 | if [[ ! -f $hostfile ]] |
---|
| 1133 | then |
---|
| 1134 | printf "\n" |
---|
| 1135 | printf "\n +++ hostfile \"$hostfile\" does not exist" |
---|
| 1136 | locat=hostfile; exit |
---|
| 1137 | fi |
---|
| 1138 | fi |
---|
| 1139 | |
---|
| 1140 | # PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN |
---|
| 1141 | if [[ $host = ibmy && $do_remote = false ]] |
---|
| 1142 | then |
---|
| 1143 | if [[ ! -f $HOME/.rhosts ]] |
---|
| 1144 | then |
---|
| 1145 | echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts |
---|
| 1146 | printf "\n\n *** file:" |
---|
| 1147 | printf "\n $HOME/.rhosts" |
---|
| 1148 | printf "\n was created\n" |
---|
| 1149 | fi |
---|
| 1150 | if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]] |
---|
| 1151 | then |
---|
| 1152 | echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts |
---|
| 1153 | printf "\n\n *** file:" |
---|
| 1154 | printf "\n $HOME/.rhosts" |
---|
| 1155 | printf "\n was extended by the name of the current host\n" |
---|
| 1156 | fi |
---|
| 1157 | fi |
---|
| 1158 | |
---|
| 1159 | |
---|
| 1160 | |
---|
| 1161 | # FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN |
---|
| 1162 | if [[ $queue = none ]] |
---|
| 1163 | then |
---|
| 1164 | case $host in |
---|
| 1165 | (ibmb) if [[ $node_usage = shared ]] |
---|
| 1166 | then |
---|
| 1167 | queue=cshare |
---|
| 1168 | else |
---|
| 1169 | queue=csolo |
---|
| 1170 | fi;; |
---|
| 1171 | (ibmh) if [[ $node_usage = shared ]] |
---|
| 1172 | then |
---|
| 1173 | queue=cshare |
---|
| 1174 | else |
---|
| 1175 | queue=csolo |
---|
| 1176 | fi;; |
---|
| 1177 | (ibmy) queue=parallel;; |
---|
[191] | 1178 | (lcsgib) queue=bigq;; |
---|
| 1179 | (lcsgih) queue=bigq;; |
---|
[129] | 1180 | (lctit) queue=sla3;; |
---|
[1] | 1181 | (nech) queue=none;; |
---|
| 1182 | (neck) queue=P;; |
---|
| 1183 | (unics) queue=unics;; |
---|
| 1184 | esac |
---|
| 1185 | fi |
---|
| 1186 | |
---|
| 1187 | |
---|
| 1188 | # VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN, |
---|
| 1189 | # INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER |
---|
| 1190 | # ERMITTELN |
---|
| 1191 | (( i = 0 )) |
---|
| 1192 | while (( i < iin )) |
---|
| 1193 | do |
---|
| 1194 | (( i = i + 1 )) |
---|
| 1195 | (( maxcycle = 0 )) |
---|
| 1196 | |
---|
| 1197 | # NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN) |
---|
| 1198 | if [[ "${actionin[$i]}" = di ]] |
---|
| 1199 | then |
---|
| 1200 | remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF |
---|
| 1201 | # REM-MASCHINE AUSWERTEN |
---|
| 1202 | eval filename=${pathin[$i]}/${endin[$i]} |
---|
| 1203 | else |
---|
| 1204 | remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF |
---|
| 1205 | # REM-MASCHINE AUSWERTEN |
---|
| 1206 | eval filename=${pathin[$i]}/${afname}${endin[$i]} |
---|
| 1207 | fi |
---|
| 1208 | |
---|
| 1209 | # PRUEFEN AUF VORHANDENSEIN |
---|
| 1210 | if [[ $(ls $filename* 2>&1 | grep -c "not found") = 1 || \ |
---|
| 1211 | $(ls $filename* 2>&1 | grep -c "No such file") = 1 || \ |
---|
| 1212 | $(ls $filename* 2>&1 | grep -c "does not exist") = 1 ]] |
---|
| 1213 | then |
---|
| 1214 | # DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN |
---|
| 1215 | # SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE |
---|
| 1216 | # VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE |
---|
| 1217 | # EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI- |
---|
| 1218 | # VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?) |
---|
| 1219 | if [[ "${transin[$i]}" != "locopt" ]] |
---|
| 1220 | then |
---|
| 1221 | printf "\n\n +++ INPUT-file: " |
---|
| 1222 | if [[ "${extin[$i]}" = "" ]] |
---|
| 1223 | then |
---|
| 1224 | printf "\n $filename" |
---|
| 1225 | else |
---|
| 1226 | printf "\n $filename.${extin[$i]}" |
---|
| 1227 | fi |
---|
| 1228 | printf "\n does not exist\n" |
---|
| 1229 | locat=input; exit |
---|
| 1230 | else |
---|
| 1231 | transin[$i]="unavailable" |
---|
| 1232 | fi |
---|
| 1233 | else |
---|
| 1234 | |
---|
| 1235 | # ZYKLUSNUMMER FESTSTELLEN |
---|
| 1236 | ls -1 -d $filename > filelist 2>/dev/null |
---|
| 1237 | ls -1 -d $filename.* >> filelist 2>/dev/null |
---|
| 1238 | while read zeile |
---|
| 1239 | do |
---|
| 1240 | cycle=$(print $zeile | cut -f2 -d".") |
---|
| 1241 | if [[ "$cycle" = "$zeile" ]] |
---|
| 1242 | then |
---|
| 1243 | (( icycle = 0 )) |
---|
| 1244 | elif [[ "$cycle" = "${extin[$i]}" ]] |
---|
| 1245 | then |
---|
| 1246 | (( icycle = 0 )) |
---|
| 1247 | else |
---|
| 1248 | (( icycle = $cycle )) |
---|
| 1249 | fi |
---|
| 1250 | if (( icycle > maxcycle )) |
---|
| 1251 | then |
---|
| 1252 | (( maxcycle = icycle )) |
---|
| 1253 | file_to_be_used=$zeile |
---|
| 1254 | fi |
---|
| 1255 | done <filelist |
---|
| 1256 | rm filelist |
---|
| 1257 | |
---|
| 1258 | # EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN |
---|
| 1259 | if (( maxcycle > 0 )) |
---|
| 1260 | then |
---|
| 1261 | if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]] |
---|
| 1262 | then |
---|
| 1263 | filename=${filename}.$maxcycle.${extin[$i]} |
---|
| 1264 | else |
---|
| 1265 | filename=${filename}.$maxcycle |
---|
| 1266 | fi |
---|
| 1267 | else |
---|
| 1268 | if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]] |
---|
| 1269 | then |
---|
| 1270 | filename=${filename}.${extin[$i]} |
---|
| 1271 | fi |
---|
| 1272 | fi |
---|
| 1273 | |
---|
| 1274 | # DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN, |
---|
| 1275 | # DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT |
---|
| 1276 | absnamein[$i]=$filename |
---|
| 1277 | if (( maxcycle > 0 )) |
---|
| 1278 | then |
---|
| 1279 | if [[ "${actionin[$i]}" = di ]] |
---|
| 1280 | then |
---|
| 1281 | frelin[$i]=${endin[$i]}.$maxcycle |
---|
| 1282 | else |
---|
| 1283 | frelin[$i]=${afname}${endin[$i]}.$maxcycle |
---|
| 1284 | fi |
---|
| 1285 | else |
---|
| 1286 | if [[ "${actionin[$i]}" = di ]] |
---|
| 1287 | then |
---|
| 1288 | frelin[$i]=${endin[$i]} |
---|
| 1289 | else |
---|
| 1290 | frelin[$i]=${afname}${endin[$i]} |
---|
| 1291 | fi |
---|
| 1292 | fi |
---|
| 1293 | |
---|
| 1294 | fi |
---|
| 1295 | done |
---|
| 1296 | |
---|
| 1297 | |
---|
| 1298 | # VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN, |
---|
| 1299 | # OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER |
---|
| 1300 | # ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN |
---|
| 1301 | # DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE |
---|
| 1302 | # RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL! |
---|
| 1303 | (( i = 0 )) |
---|
| 1304 | while (( i < iout )) |
---|
| 1305 | do |
---|
| 1306 | (( i = i + 1 )) |
---|
| 1307 | if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr || "${actionout[$i]}" = tra || "${actionout[$i]}" = trpe ) ) ]] |
---|
| 1308 | then |
---|
| 1309 | if [[ "${actionout[$i]}" = tr || "${actionout[$i]}" = trpe ]] |
---|
| 1310 | then |
---|
| 1311 | actionout[$i]="" |
---|
| 1312 | elif [[ "${actionout[$i]}" = tra ]] |
---|
| 1313 | then |
---|
| 1314 | actionout[$i]=a |
---|
| 1315 | fi |
---|
| 1316 | (( maxcycle = 0 )) |
---|
| 1317 | eval filename=${pathout[$i]}/${fname}${endout[$i]} |
---|
| 1318 | eval catalogname=${pathout[$i]} |
---|
| 1319 | if [[ $(ls $filename* 2>&1 | grep -c "not found") = 1 || \ |
---|
| 1320 | $(ls $filename* 2>&1 | grep -c "No such file") = 1 || \ |
---|
| 1321 | $(ls $filename* 2>&1 | grep -c "does not exist") = 1 ]] |
---|
| 1322 | then |
---|
| 1323 | |
---|
| 1324 | # OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH. |
---|
| 1325 | if cat /dev/null > $filename |
---|
| 1326 | then |
---|
| 1327 | rm $filename |
---|
| 1328 | else |
---|
| 1329 | |
---|
| 1330 | # PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN |
---|
| 1331 | if [[ ! -d $catalogname ]] |
---|
| 1332 | then |
---|
| 1333 | if mkdir -p $catalogname |
---|
| 1334 | then |
---|
| 1335 | printf "\n\n *** directory:" |
---|
| 1336 | printf "\n $catalogname" |
---|
| 1337 | printf "\n was created\n" |
---|
| 1338 | else |
---|
| 1339 | printf "\n\n +++ OUTPUT-file:" |
---|
| 1340 | printf "\n $filename" |
---|
| 1341 | printf "\n cannot be created, because directory does not exist" |
---|
| 1342 | printf "\n and cannot be created either" |
---|
| 1343 | printf "\n" |
---|
| 1344 | locat=output ; exit |
---|
| 1345 | fi 2>/dev/null |
---|
| 1346 | else |
---|
| 1347 | printf "\n\n +++ OUTPUT-file:" |
---|
| 1348 | printf "\n $filename" |
---|
| 1349 | printf "\n cannot be created, although directory exists" |
---|
| 1350 | printf "\n" |
---|
| 1351 | locat=output ; exit |
---|
| 1352 | fi |
---|
| 1353 | fi 2>/dev/null |
---|
| 1354 | else |
---|
| 1355 | |
---|
| 1356 | # ZYKLUSNUMMER FESTSTELLEN |
---|
| 1357 | ls -1 -d $filename > filelist 2>/dev/null |
---|
| 1358 | ls -1 -d $filename.* >> filelist 2>/dev/null |
---|
| 1359 | while read zeile |
---|
| 1360 | do |
---|
| 1361 | cycle=$(print $zeile | cut -f2 -d".") |
---|
| 1362 | if [[ "$cycle" = "$zeile" || "$cycle" = ${extout[$i]} ]] |
---|
| 1363 | then |
---|
| 1364 | (( icycle = 1 )) |
---|
| 1365 | else |
---|
| 1366 | (( icycle = $cycle + 1 )) |
---|
| 1367 | fi |
---|
| 1368 | if (( icycle > maxcycle )) |
---|
| 1369 | then |
---|
| 1370 | (( maxcycle = icycle )) |
---|
| 1371 | fi |
---|
| 1372 | done <filelist |
---|
| 1373 | rm filelist |
---|
| 1374 | fi |
---|
| 1375 | |
---|
| 1376 | # EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH |
---|
| 1377 | # DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN |
---|
| 1378 | # HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG |
---|
| 1379 | # IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH |
---|
| 1380 | if [[ "${actionout[$i]}" != a ]] |
---|
| 1381 | then |
---|
| 1382 | if (( maxcycle > 0 )) |
---|
| 1383 | then |
---|
| 1384 | filename=${filename}.$maxcycle |
---|
| 1385 | if cat /dev/null > $filename |
---|
| 1386 | then |
---|
| 1387 | rm $filename |
---|
| 1388 | else |
---|
| 1389 | printf "\n +++ OUTPUT-file:" |
---|
| 1390 | printf "\n $filename" |
---|
| 1391 | printf "\n cannot be created" |
---|
| 1392 | locat=output ; exit |
---|
| 1393 | fi |
---|
| 1394 | fi |
---|
| 1395 | else |
---|
| 1396 | (( maxcycle = maxcycle - 1 )) |
---|
| 1397 | if (( maxcycle > 0 )) |
---|
| 1398 | then |
---|
| 1399 | filename=${filename}.$maxcycle |
---|
| 1400 | fi |
---|
| 1401 | fi |
---|
| 1402 | |
---|
| 1403 | # DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN, |
---|
| 1404 | # DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER |
---|
| 1405 | # DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT |
---|
| 1406 | pathout[$i]=$filename |
---|
| 1407 | if (( maxcycle > 0 )) |
---|
| 1408 | then |
---|
| 1409 | frelout[$i]=${fname}${endout[$i]}.$maxcycle |
---|
| 1410 | else |
---|
| 1411 | frelout[$i]=${fname}${endout[$i]} |
---|
| 1412 | fi |
---|
| 1413 | |
---|
| 1414 | fi |
---|
| 1415 | done |
---|
| 1416 | |
---|
| 1417 | |
---|
[83] | 1418 | # DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK |
---|
| 1419 | if [[ $(echo $package_list | grep -c dvrp_graphics) != 0 ]] |
---|
| 1420 | then |
---|
| 1421 | if [[ "$dvrp_inc" = "" ]] |
---|
| 1422 | then |
---|
| 1423 | printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file" |
---|
| 1424 | printf "\n This is required for the dvrp_graphics package.\n" |
---|
| 1425 | locat=dvrp; exit |
---|
| 1426 | fi |
---|
| 1427 | if [[ "$dvrp_lib" = "" ]] |
---|
| 1428 | then |
---|
| 1429 | printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file" |
---|
| 1430 | printf "\n This is required for the dvrp_graphics package.\n" |
---|
| 1431 | locat=dvrp; exit |
---|
| 1432 | fi |
---|
| 1433 | fi |
---|
| 1434 | |
---|
| 1435 | |
---|
[1] | 1436 | # PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES |
---|
| 1437 | # PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT |
---|
| 1438 | # UEBERSETZT ZU WERDEN) |
---|
| 1439 | if [[ "$mainprog" = "" && "$executable" = "" ]] |
---|
| 1440 | then |
---|
| 1441 | printf "\n +++ neither main program nor executable defined" |
---|
| 1442 | locat=source; exit |
---|
| 1443 | elif [[ "$mainprog" != "" && "$executable" != "" ]] |
---|
| 1444 | then |
---|
| 1445 | printf "\n +++ main program as well as executable defined" |
---|
| 1446 | locat=source; exit |
---|
| 1447 | elif [[ "$mainprog" = "" && "$executable" != "" ]] |
---|
| 1448 | then |
---|
| 1449 | do_compile=false |
---|
| 1450 | fi |
---|
| 1451 | |
---|
| 1452 | |
---|
[191] | 1453 | # SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE |
---|
| 1454 | # ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN- |
---|
| 1455 | # SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT |
---|
[193] | 1456 | if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]] |
---|
[191] | 1457 | then |
---|
| 1458 | rm -rf SOURCES_FOR_RUN_$fname |
---|
| 1459 | mkdir SOURCES_FOR_RUN_$fname |
---|
| 1460 | fi |
---|
| 1461 | |
---|
| 1462 | |
---|
[1] | 1463 | # ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN |
---|
| 1464 | # BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH |
---|
| 1465 | # DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND |
---|
| 1466 | # IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND |
---|
| 1467 | if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]] |
---|
| 1468 | then |
---|
| 1469 | |
---|
[5] | 1470 | [[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED |
---|
| 1471 | [[ "$source_list" = WP ]] && source_list=WRITE_PERMIT |
---|
[1] | 1472 | |
---|
| 1473 | |
---|
| 1474 | # EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT |
---|
| 1475 | # WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB |
---|
| 1476 | # UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN |
---|
| 1477 | # BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN |
---|
| 1478 | # WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER |
---|
| 1479 | # MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH |
---|
| 1480 | # ZU UBERSETZENDEN DATEIEN ERSETZT IST. |
---|
| 1481 | # ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_... |
---|
| 1482 | # GESAMMELT |
---|
[5] | 1483 | if [[ "$source_list" = WRITE_PERMIT ]] |
---|
[1] | 1484 | then |
---|
| 1485 | |
---|
| 1486 | source_list="" |
---|
| 1487 | cd $source_path |
---|
| 1488 | |
---|
| 1489 | |
---|
| 1490 | # ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN |
---|
| 1491 | Names=$(ls -1 *.f90 2>&1) |
---|
| 1492 | [[ $(echo $Names | grep -c '*.f90') = 0 ]] && Filenames="$Names" |
---|
| 1493 | Names=$(ls -1 *.F90 2>&1) |
---|
| 1494 | [[ $(echo $Names | grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names" |
---|
| 1495 | Names=$(ls -1 *.F 2>&1) |
---|
| 1496 | [[ $(echo $Names | grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names" |
---|
| 1497 | Names=$(ls -1 *.f 2>&1) |
---|
| 1498 | [[ $(echo $Names | grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names" |
---|
| 1499 | Names=$(ls -1 *.c 2>&1) |
---|
| 1500 | [[ $(echo $Names | grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names" |
---|
| 1501 | |
---|
| 1502 | |
---|
| 1503 | # DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN |
---|
| 1504 | for dateiname in $Filenames |
---|
| 1505 | do |
---|
| 1506 | if [[ -w $dateiname ]] |
---|
| 1507 | then |
---|
| 1508 | if [[ "$exclude" = "" || $(echo $exclude | grep -c $dateiname) = 0 ]] |
---|
| 1509 | then |
---|
| 1510 | cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 1511 | source_list=$source_list"$dateiname " |
---|
| 1512 | fi |
---|
| 1513 | fi |
---|
| 1514 | done |
---|
| 1515 | |
---|
| 1516 | cd - > /dev/null |
---|
| 1517 | |
---|
| 1518 | |
---|
[5] | 1519 | elif [[ "$source_list" = LOCALLY_MODIFIED ]] |
---|
| 1520 | then |
---|
| 1521 | |
---|
| 1522 | # MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN |
---|
| 1523 | source_list="" |
---|
| 1524 | cd $source_path |
---|
| 1525 | |
---|
| 1526 | |
---|
| 1527 | # PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT |
---|
| 1528 | if [[ ! -d .svn ]] |
---|
| 1529 | then |
---|
| 1530 | printf "\n\n +++ source directory" |
---|
| 1531 | printf "\n \"$source_path\" " |
---|
| 1532 | printf "\n is not under control of \"subversion\"." |
---|
| 1533 | printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n" |
---|
| 1534 | fi |
---|
| 1535 | |
---|
| 1536 | |
---|
| 1537 | # ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN |
---|
| 1538 | Filenames="" |
---|
[69] | 1539 | svn status > tmp_mrun |
---|
| 1540 | while read line |
---|
[5] | 1541 | do |
---|
| 1542 | firstc=`echo $line | cut -c1` |
---|
| 1543 | if [[ $firstc = M || $firstc = "?" ]] |
---|
| 1544 | then |
---|
| 1545 | Name=`echo "$line" | cut -c8-` |
---|
| 1546 | extension=`echo $Name | cut -d. -f2` |
---|
| 1547 | if [[ "$extension" = f90 || "$extension" = F90 || "$extension" = f || "$extension" = F || "$extension" = c ]] |
---|
| 1548 | then |
---|
| 1549 | Filenames="$Filenames "$Name |
---|
| 1550 | fi |
---|
| 1551 | fi |
---|
[69] | 1552 | done < tmp_mrun |
---|
[5] | 1553 | |
---|
| 1554 | |
---|
| 1555 | # DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN |
---|
| 1556 | for dateiname in $Filenames |
---|
| 1557 | do |
---|
| 1558 | cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 1559 | source_list=$source_list"$dateiname " |
---|
| 1560 | done |
---|
| 1561 | |
---|
| 1562 | cd - > /dev/null |
---|
| 1563 | |
---|
| 1564 | |
---|
[1] | 1565 | # MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN |
---|
| 1566 | # BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN |
---|
| 1567 | # VORHANDEN |
---|
[5] | 1568 | elif [[ "$source_list" != "" && $restart_run != true ]] |
---|
[1] | 1569 | then |
---|
| 1570 | |
---|
| 1571 | cd $source_path |
---|
| 1572 | |
---|
| 1573 | for filename in $source_list |
---|
| 1574 | do |
---|
| 1575 | |
---|
| 1576 | # QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN |
---|
| 1577 | if [[ $(print $filename | grep -c "/") != 0 ]] |
---|
| 1578 | then |
---|
| 1579 | printf "\n +++ source code file: $filename" |
---|
| 1580 | printf "\n must not contain (\"/\") " |
---|
| 1581 | locat=source; exit |
---|
| 1582 | fi |
---|
| 1583 | |
---|
| 1584 | if [[ ! -f $filename ]] |
---|
| 1585 | then |
---|
| 1586 | printf "\n +++ source code file: $filename" |
---|
| 1587 | printf "\n does not exist" |
---|
| 1588 | locat=source; exit |
---|
| 1589 | else |
---|
| 1590 | cp $filename $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 1591 | fi |
---|
| 1592 | |
---|
| 1593 | done |
---|
| 1594 | |
---|
| 1595 | cd - > /dev/null |
---|
| 1596 | |
---|
| 1597 | fi |
---|
| 1598 | |
---|
| 1599 | |
---|
| 1600 | # PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER |
---|
| 1601 | # LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN |
---|
| 1602 | # NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT) |
---|
[5] | 1603 | if [[ $restart_run != true ]] |
---|
[1] | 1604 | then |
---|
| 1605 | |
---|
| 1606 | if [[ ! -f "$source_path/$mainprog" ]] |
---|
| 1607 | then |
---|
| 1608 | printf "\n\n +++ main program: $mainprog" |
---|
| 1609 | printf "\n does not exist in source directory" |
---|
| 1610 | printf "\n \"$source_path\"\n" |
---|
| 1611 | locat=source; exit |
---|
| 1612 | else |
---|
| 1613 | if [[ $(echo $source_list | grep -c $mainprog) = 0 ]] |
---|
| 1614 | then |
---|
| 1615 | cp $source_path/$mainprog SOURCES_FOR_RUN_$fname |
---|
| 1616 | source_list=${mainprog}" $source_list" |
---|
| 1617 | fi |
---|
| 1618 | fi |
---|
| 1619 | fi |
---|
| 1620 | |
---|
| 1621 | |
---|
| 1622 | # DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN |
---|
[5] | 1623 | if [[ $restart_run != true && "$add_source_path" != "" ]] |
---|
[1] | 1624 | then |
---|
| 1625 | |
---|
| 1626 | # GIBT ES DAS VERZEICHNIS UEBERHAUPT? |
---|
| 1627 | if [[ ! -d $add_source_path ]] |
---|
| 1628 | then |
---|
| 1629 | printf "\n\n +++ WARNING: additional source code directory" |
---|
| 1630 | printf "\n \"$add_source_path\" " |
---|
| 1631 | printf "\n does not exist or is not a directory." |
---|
| 1632 | printf "\n No source code will be used from this directory!\n" |
---|
| 1633 | add_source_path="" |
---|
| 1634 | sleep 3 |
---|
| 1635 | else |
---|
| 1636 | |
---|
| 1637 | cd $add_source_path |
---|
| 1638 | |
---|
| 1639 | Names=$(ls -1 *.f90 2>&1) |
---|
| 1640 | [[ $(echo $Names | grep -c '*.f90') = 0 ]] && AddFilenames="$Names" |
---|
| 1641 | Names=$(ls -1 *.F90 2>&1) |
---|
| 1642 | [[ $(echo $Names | grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names" |
---|
| 1643 | Names=$(ls -1 *.F 2>&1) |
---|
| 1644 | [[ $(echo $Names | grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names" |
---|
| 1645 | Names=$(ls -1 *.f 2>&1) |
---|
| 1646 | [[ $(echo $Names | grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names" |
---|
| 1647 | Names=$(ls -1 *.c 2>&1) |
---|
| 1648 | [[ $(echo $Names | grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names" |
---|
| 1649 | |
---|
| 1650 | cd - > /dev/null |
---|
| 1651 | cd SOURCES_FOR_RUN_$fname |
---|
| 1652 | |
---|
| 1653 | for dateiname in $AddFilenames |
---|
| 1654 | do |
---|
| 1655 | if [[ -f $dateiname ]] |
---|
| 1656 | then |
---|
| 1657 | printf "\n +++ source code file \"$dateiname\" found in additional" |
---|
| 1658 | printf "\n source code directory \"$add_source_path\" " |
---|
| 1659 | printf "\n as well as in directory \"$source_path\"." |
---|
| 1660 | locat=source; exit |
---|
| 1661 | fi |
---|
| 1662 | |
---|
| 1663 | cp $add_source_path/$dateiname . |
---|
| 1664 | source_list="$source_list $dateiname" |
---|
| 1665 | |
---|
| 1666 | # Default User-Interface von der Liste entfernen, falls Datei |
---|
| 1667 | # ein User-Interface enthaelt |
---|
| 1668 | if [[ $( cat $dateiname | grep -c "END SUBROUTINE user_parin" ) != 0 ]] |
---|
| 1669 | then |
---|
[50] | 1670 | if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]] |
---|
[1] | 1671 | then |
---|
| 1672 | rm -rf user_interface.f90 |
---|
| 1673 | source_list=`echo $source_list | sed -e 's/user_interface.f90//'` |
---|
[50] | 1674 | printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated" |
---|
[1] | 1675 | printf "\n since a user-interface is found in file" |
---|
| 1676 | printf "\n \"$add_source_path/$dateiname\" \n" |
---|
| 1677 | sleep 3 |
---|
| 1678 | else |
---|
| 1679 | printf "\n\n *** user-interface file \"$dateiname\" " |
---|
| 1680 | printf "\n added to the files to be translated \n" |
---|
| 1681 | sleep 3 |
---|
| 1682 | fi |
---|
| 1683 | fi |
---|
| 1684 | done |
---|
| 1685 | |
---|
| 1686 | cd - > /dev/null |
---|
| 1687 | fi |
---|
| 1688 | fi |
---|
| 1689 | |
---|
| 1690 | |
---|
| 1691 | # ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN, |
---|
| 1692 | # DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN |
---|
[5] | 1693 | if [[ $restart_run != true && -n $package_list ]] |
---|
[1] | 1694 | then |
---|
| 1695 | |
---|
| 1696 | cd $source_path |
---|
| 1697 | |
---|
| 1698 | for package in $package_list |
---|
| 1699 | do |
---|
| 1700 | |
---|
| 1701 | [[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics |
---|
| 1702 | |
---|
| 1703 | # ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN |
---|
| 1704 | # FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN |
---|
| 1705 | # LIEFERT |
---|
| 1706 | package_source_list=`grep "defined( __$package " * 2>/dev/null | cut -f1 -d:` |
---|
| 1707 | |
---|
| 1708 | |
---|
| 1709 | # FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN |
---|
| 1710 | # HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN |
---|
| 1711 | for source_list_name in $package_source_list |
---|
| 1712 | do |
---|
| 1713 | if [[ $(echo $source_list | grep -c $source_list_name) = 0 ]] |
---|
| 1714 | then |
---|
| 1715 | |
---|
| 1716 | # NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN |
---|
| 1717 | ending=`echo $source_list_name | cut -f2 -d.` |
---|
| 1718 | if [[ "$ending" = f90 || "$ending" = F90 || "$ending" = f || "$ending" = F || "$ending" = c ]] |
---|
| 1719 | then |
---|
| 1720 | cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 1721 | source_list="$source_list $source_list_name" |
---|
| 1722 | fi |
---|
| 1723 | fi |
---|
| 1724 | done |
---|
| 1725 | done |
---|
| 1726 | |
---|
| 1727 | cd - > /dev/null |
---|
| 1728 | fi |
---|
| 1729 | |
---|
| 1730 | |
---|
| 1731 | # MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN |
---|
| 1732 | # BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN... |
---|
[82] | 1733 | if [[ "$restart_run" != true ]] |
---|
[1] | 1734 | then |
---|
| 1735 | [[ "$makefile" = "" ]] && makefile=$source_path/Makefile |
---|
| 1736 | if [[ ! -f $makefile ]] |
---|
| 1737 | then |
---|
| 1738 | printf "\n +++ file \"$makefile\" does not exist" |
---|
| 1739 | locat=make; exit |
---|
| 1740 | else |
---|
| 1741 | cp $makefile SOURCES_FOR_RUN_$fname/Makefile |
---|
| 1742 | fi |
---|
| 1743 | fi |
---|
| 1744 | |
---|
| 1745 | fi # do_compile=true |
---|
| 1746 | |
---|
| 1747 | |
---|
| 1748 | # FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE |
---|
| 1749 | # UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN |
---|
| 1750 | if [[ $do_compile = true ]] |
---|
| 1751 | then |
---|
| 1752 | |
---|
| 1753 | # PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN |
---|
| 1754 | # ZUSAMMENSETZEN |
---|
[83] | 1755 | # DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE |
---|
[1] | 1756 | if [[ $(echo $localhost | cut -c1-3) = ibm ]] |
---|
| 1757 | then |
---|
[82] | 1758 | cpp_options="${cpp_options},-D__ibm=__ibm" |
---|
[1] | 1759 | elif [[ $(echo $localhost | cut -c1-3) = nec ]] |
---|
| 1760 | then |
---|
[82] | 1761 | cpp_options="$cpp_options -D__nec" |
---|
| 1762 | elif [[ $(echo $localhost | cut -c1-2) = lc ]] |
---|
| 1763 | then |
---|
| 1764 | cpp_options="$cpp_options -D__lc" |
---|
[1] | 1765 | else |
---|
[82] | 1766 | cpp_options="$cpp_options -D__$localhost" |
---|
[1] | 1767 | fi |
---|
[83] | 1768 | |
---|
| 1769 | # DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL) |
---|
[1] | 1770 | if [[ $(echo $localhost | cut -c1-3) = ibm ]] |
---|
| 1771 | then |
---|
[82] | 1772 | [[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1" |
---|
| 1773 | [[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2" |
---|
[1] | 1774 | else |
---|
[82] | 1775 | [[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1" |
---|
| 1776 | [[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2" |
---|
[1] | 1777 | fi |
---|
[83] | 1778 | |
---|
| 1779 | # DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p) |
---|
[1] | 1780 | if [[ -n $package_list ]] |
---|
| 1781 | then |
---|
| 1782 | for package in $package_list |
---|
| 1783 | do |
---|
| 1784 | if [[ $(echo $localhost | cut -c1-3) = ibm ]] |
---|
| 1785 | then |
---|
| 1786 | if [[ $package != "dvrp_graphics+1PE" ]] |
---|
| 1787 | then |
---|
[82] | 1788 | cpp_options="${cpp_options},-D__$package=__$package" |
---|
[1] | 1789 | else |
---|
[82] | 1790 | cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics" |
---|
[1] | 1791 | export use_seperate_pe_for_dvrp_output=true |
---|
| 1792 | fi |
---|
| 1793 | else |
---|
| 1794 | if [[ $package != "dvrp_graphics+1PE" ]] |
---|
| 1795 | then |
---|
[82] | 1796 | cpp_options="$cpp_options -D__$package" |
---|
[1] | 1797 | else |
---|
[82] | 1798 | cpp_options="$cpp_options -D__dvrp_graphics" |
---|
[1] | 1799 | export use_seperate_pe_for_dvrp_output=true |
---|
| 1800 | fi |
---|
| 1801 | fi |
---|
| 1802 | done |
---|
| 1803 | fi |
---|
[83] | 1804 | |
---|
| 1805 | # DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND |
---|
[1] | 1806 | if [[ -n $cpp_opts ]] |
---|
| 1807 | then |
---|
| 1808 | for popts in $cpp_opts |
---|
| 1809 | do |
---|
[82] | 1810 | if [[ $(echo $localhost | cut -c1-3) = ibm ]] |
---|
| 1811 | then |
---|
| 1812 | cpp_options="${cpp_options},-D__$popts=__$popts" |
---|
| 1813 | else |
---|
| 1814 | cpp_options="$cpp_options -D__$popts" |
---|
| 1815 | fi |
---|
[1] | 1816 | done |
---|
| 1817 | fi |
---|
| 1818 | |
---|
| 1819 | else |
---|
| 1820 | |
---|
| 1821 | |
---|
| 1822 | # BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN |
---|
| 1823 | if [[ $do_remote = false ]] |
---|
| 1824 | then |
---|
| 1825 | if [[ ! -f $executable ]] |
---|
| 1826 | then |
---|
| 1827 | printf "\n +++ executable file: $executable" |
---|
| 1828 | printf "\n does not exist" |
---|
| 1829 | locat=executable; exit |
---|
| 1830 | fi |
---|
| 1831 | fi |
---|
| 1832 | fi |
---|
| 1833 | |
---|
| 1834 | |
---|
| 1835 | # JOBMODUS FESTSTELLEN |
---|
| 1836 | if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit || "$QUEUE" != interactive && $localhost = lctit ]] |
---|
| 1837 | then |
---|
| 1838 | jobmo=BATCH |
---|
| 1839 | else |
---|
| 1840 | jobmo=INTERACTIVE |
---|
| 1841 | fi |
---|
| 1842 | |
---|
| 1843 | |
---|
| 1844 | # HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS |
---|
| 1845 | # DURCH BENUTZER ANDERWEITIG VEREINBART |
---|
| 1846 | if [[ "$compiler_name" = "" ]] |
---|
| 1847 | then |
---|
[82] | 1848 | |
---|
| 1849 | printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\"" |
---|
| 1850 | locat=compiler_name; exit |
---|
| 1851 | |
---|
[1] | 1852 | fi |
---|
| 1853 | |
---|
| 1854 | |
---|
| 1855 | # COMPILER AUF NECK UEBERSCHREIBEN |
---|
| 1856 | [[ $localhost = neck ]] && compiler_name=mpif90 |
---|
| 1857 | |
---|
| 1858 | |
---|
| 1859 | |
---|
| 1860 | # TEMPORAEREN KATALOGNAMEN BESTIMMEN |
---|
| 1861 | kennung=$RANDOM |
---|
| 1862 | if [[ "$tmp_user_catalog" = "" ]] |
---|
| 1863 | then |
---|
| 1864 | if [[ $localhost = ibmb || $localhost = ibmh ]] |
---|
| 1865 | then |
---|
| 1866 | tmp_user_catalog=$TMPDIR |
---|
| 1867 | elif [[ $localhost = nech ]] |
---|
| 1868 | then |
---|
| 1869 | tmp_user_catalog=$WRKSHR |
---|
| 1870 | else |
---|
| 1871 | tmp_user_catalog=/tmp |
---|
| 1872 | fi |
---|
| 1873 | fi |
---|
| 1874 | TEMPDIR=$tmp_user_catalog/${usern}.$kennung |
---|
| 1875 | |
---|
| 1876 | |
---|
| 1877 | # KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN |
---|
| 1878 | # BESTIMMEN |
---|
| 1879 | if [[ "$tmp_data_catalog" = "" ]] |
---|
| 1880 | then |
---|
| 1881 | if [[ $localhost = ibmb || $localhost = ibmh ]] |
---|
| 1882 | then |
---|
| 1883 | tmp_data_catalog=$WORK/mrun_restart_data |
---|
| 1884 | elif [[ $localhost = nech ]] |
---|
| 1885 | then |
---|
| 1886 | tmp_data_catalog=$WRKSHR/mrun_restart_data |
---|
| 1887 | else |
---|
| 1888 | tmp_data_catalog=/tmp/mrun_restart_data |
---|
| 1889 | fi |
---|
| 1890 | fi |
---|
| 1891 | |
---|
| 1892 | |
---|
| 1893 | # EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN |
---|
| 1894 | # ERSETZEN |
---|
| 1895 | if [[ $do_remote = false && $do_compile = true ]] |
---|
| 1896 | then |
---|
| 1897 | eval fopts=\"$fopts\" |
---|
| 1898 | eval lopts=\"$lopts\" |
---|
| 1899 | fi |
---|
| 1900 | |
---|
| 1901 | |
---|
| 1902 | |
---|
| 1903 | # COMPILE- UND LINK-OPTIONEN BESTIMMEN |
---|
[82] | 1904 | fopts="$fopts $netcdf_inc $dvrp_inc" |
---|
| 1905 | lopts="$lopts $netcdf_lib $dvrp_lib" |
---|
[1] | 1906 | ROPTS="$ropts" |
---|
[179] | 1907 | if [[ ( $(echo $host | cut -c1-3) = nec || $(echo $host | cut -c1-3) = ibm || $host = lcsgih || $host = lcsgib || $host = lctit || $host = lcfimm || $host = lcxt4 ) && -n $numprocs ]] |
---|
[1] | 1908 | then |
---|
| 1909 | XOPT="-X $numprocs" |
---|
| 1910 | fi |
---|
| 1911 | |
---|
| 1912 | |
---|
| 1913 | |
---|
| 1914 | # PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO- |
---|
| 1915 | # GRAMM BENOETIGT |
---|
| 1916 | done=false |
---|
| 1917 | while [[ $done = false ]] |
---|
| 1918 | do |
---|
| 1919 | cputime=$cpumax |
---|
| 1920 | if (( $cputime == 0 )) |
---|
| 1921 | then |
---|
| 1922 | printf "\n +++ cpu-time is undefined" |
---|
| 1923 | printf "\n >>> Please type CPU-time in seconds as INTEGER:" |
---|
| 1924 | printf "\n >>> " |
---|
| 1925 | read cputime 1>/dev/null 2>&1 |
---|
| 1926 | else |
---|
| 1927 | done=true |
---|
| 1928 | fi |
---|
| 1929 | cpumax=$cputime |
---|
| 1930 | done |
---|
| 1931 | |
---|
| 1932 | (( minuten = cputime / 60 )) |
---|
| 1933 | (( sekunden = cputime - minuten * 60 )) |
---|
| 1934 | |
---|
| 1935 | |
---|
| 1936 | # PRUEFEN DER KERNSPEICHERANFORDERUNG |
---|
| 1937 | if [[ $do_batch = true ]] |
---|
| 1938 | then |
---|
| 1939 | done=false |
---|
| 1940 | while [[ $done = false ]] |
---|
| 1941 | do |
---|
| 1942 | if (( memory == 0 )) |
---|
| 1943 | then |
---|
| 1944 | printf "\n +++ memory demand is undefined" |
---|
| 1945 | printf "\n >>> Please type memory in MByte per process as INTEGER:" |
---|
| 1946 | printf "\n >>> " |
---|
| 1947 | read memory 1>/dev/null 2>&1 |
---|
| 1948 | else |
---|
| 1949 | done=true |
---|
| 1950 | fi |
---|
| 1951 | done |
---|
| 1952 | fi |
---|
| 1953 | |
---|
| 1954 | |
---|
| 1955 | # PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE |
---|
| 1956 | if [[ $do_remote = true && -z $remote_username ]] |
---|
| 1957 | then |
---|
| 1958 | while [[ -z $remote_username ]] |
---|
| 1959 | do |
---|
| 1960 | printf "\n +++ username on remote host \"$host\" is undefined" |
---|
| 1961 | printf "\n >>> Please type username:" |
---|
| 1962 | printf "\n >>> " |
---|
| 1963 | read remote_username |
---|
| 1964 | done |
---|
| 1965 | mc="$mc -u$remote_username" |
---|
| 1966 | fi |
---|
| 1967 | |
---|
| 1968 | ########################################################################### |
---|
| 1969 | # HEADER-AUSGABE |
---|
| 1970 | ########################################################################### |
---|
| 1971 | |
---|
| 1972 | |
---|
| 1973 | calltime=$(date) |
---|
| 1974 | printf "\n" |
---|
| 1975 | # [[ $silent = false ]] && clear |
---|
| 1976 | printf "#--------------------------------------------------------------# \n" |
---|
| 1977 | printf "| $version$calltime | \n" |
---|
| 1978 | printf "| | \n" |
---|
| 1979 | spalte1="called on:"; spalte2=$localhost_realname |
---|
| 1980 | printf "| $spalte1$spalte2 | \n" |
---|
| 1981 | if [[ $local_compile = false ]] |
---|
| 1982 | then |
---|
| 1983 | if [[ $do_remote = true ]] |
---|
| 1984 | then |
---|
| 1985 | spalte1="execution on:"; spalte2="$host (username: $remote_username)" |
---|
| 1986 | else |
---|
| 1987 | spalte1="execution on:"; spalte2="$host ($localhost_realname)" |
---|
| 1988 | fi |
---|
| 1989 | else |
---|
| 1990 | spalte1="compiling test only!"; spalte2="" |
---|
| 1991 | fi |
---|
| 1992 | printf "| $spalte1$spalte2 | \n" |
---|
| 1993 | if [[ -n $numprocs ]] |
---|
| 1994 | then |
---|
| 1995 | spalte1="number of PEs:"; spalte2=$numprocs |
---|
| 1996 | printf "| $spalte1$spalte2 | \n" |
---|
| 1997 | fi |
---|
| 1998 | if [[ -n $tasks_per_node ]] |
---|
| 1999 | then |
---|
| 2000 | spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)" |
---|
| 2001 | printf "| $spalte1$spalte2 | \n" |
---|
| 2002 | fi |
---|
| 2003 | if [[ $threads_per_task != 1 ]] |
---|
| 2004 | then |
---|
| 2005 | spalte1="threads per task:"; spalte2="$threads_per_task" |
---|
| 2006 | printf "| $spalte1$spalte2 | \n" |
---|
| 2007 | fi |
---|
| 2008 | printf "| | \n" |
---|
| 2009 | if [[ $do_compile = true ]] |
---|
| 2010 | then |
---|
[82] | 2011 | spalte1=cpp-directives:; spalte2=$cpp_options |
---|
[1] | 2012 | printf "| $spalte1$spalte2 | \n" |
---|
[82] | 2013 | zeile=$(echo "$cpp_options" | cut -c41-) |
---|
[1] | 2014 | while [[ "$zeile" != "" ]] |
---|
| 2015 | do |
---|
| 2016 | spalte1="" |
---|
| 2017 | spalte2=$zeile |
---|
| 2018 | printf "| $spalte1$spalte2 | \n" |
---|
| 2019 | zeile=$(echo "$zeile" | cut -c41-) |
---|
| 2020 | done |
---|
| 2021 | |
---|
[82] | 2022 | spalte1=compiler-options:; spalte2="$fopts" |
---|
[1] | 2023 | printf "| $spalte1$spalte2 | \n" |
---|
[82] | 2024 | zeile=$(echo "$fopts" | cut -c41-) |
---|
[1] | 2025 | while [[ "$zeile" != "" ]] |
---|
| 2026 | do |
---|
| 2027 | spalte1="" |
---|
| 2028 | spalte2=$zeile |
---|
| 2029 | printf "| $spalte1$spalte2 | \n" |
---|
| 2030 | zeile=$(echo "$zeile" | cut -c41-) |
---|
| 2031 | done |
---|
| 2032 | |
---|
[82] | 2033 | spalte1=linker-options:; spalte2=$lopts |
---|
[1] | 2034 | printf "| $spalte1$spalte2 | \n" |
---|
[82] | 2035 | zeile=$(echo "$lopts" | cut -c41-) |
---|
[1] | 2036 | while [[ "$zeile" != "" ]] |
---|
| 2037 | do |
---|
| 2038 | spalte1="" |
---|
| 2039 | spalte2=$zeile |
---|
| 2040 | printf "| $spalte1$spalte2 | \n" |
---|
| 2041 | zeile=$(echo "$zeile" | cut -c41-) |
---|
| 2042 | done |
---|
| 2043 | |
---|
| 2044 | spalte1="main program":; spalte2=$mainprog |
---|
| 2045 | printf "| $spalte1$spalte2 | \n" |
---|
| 2046 | else |
---|
| 2047 | spalte1=executable:; spalte2=$executable |
---|
| 2048 | printf "| $spalte1$spalte2 | \n" |
---|
| 2049 | fi |
---|
| 2050 | printf "| | \n" |
---|
| 2051 | spalte1="base name of files":; spalte2=$fname |
---|
| 2052 | printf "| $spalte1$spalte2 | \n" |
---|
| 2053 | if [[ $fname != $afname ]] |
---|
| 2054 | then |
---|
| 2055 | spalte1="base name of input files":; spalte2=$afname |
---|
| 2056 | printf "| $spalte1$spalte2 | \n" |
---|
| 2057 | fi |
---|
| 2058 | spalte1="INPUT control list":; spalte2=$input_list |
---|
| 2059 | printf "| $spalte1$spalte2 | \n" |
---|
| 2060 | spalte1="OUTPUT control list":; spalte2=$output_list |
---|
| 2061 | printf "| $spalte1$spalte2 | \n" |
---|
| 2062 | |
---|
| 2063 | if [[ $do_batch = true || "$LOADLBATCH" = yes ]] |
---|
| 2064 | then |
---|
| 2065 | spalte1="memory demand / PE":; spalte2="$memory MB" |
---|
| 2066 | printf "| $spalte1$spalte2 | \n" |
---|
| 2067 | spalte1=CPU-time:; spalte2="$minuten:$sekunden" |
---|
| 2068 | printf "| $spalte1$spalte2 | \n" |
---|
| 2069 | fi |
---|
| 2070 | |
---|
| 2071 | if [[ $do_compile = true ]] |
---|
| 2072 | then |
---|
| 2073 | printf "| | \n" |
---|
| 2074 | printf "| Files to be compiled: | \n" |
---|
| 2075 | zeile=$source_list |
---|
| 2076 | while [[ "$zeile" != "" ]] |
---|
| 2077 | do |
---|
| 2078 | spalte3=$zeile |
---|
| 2079 | printf "| $spalte3 | \n" |
---|
| 2080 | zeile=$(echo "$zeile" | cut -c61-) |
---|
| 2081 | done |
---|
| 2082 | fi |
---|
| 2083 | printf "#--------------------------------------------------------------#" |
---|
| 2084 | |
---|
| 2085 | |
---|
| 2086 | |
---|
| 2087 | # BEDINGTE AUSGABE DER DATEIVERBINDUNGEN |
---|
| 2088 | if [[ $do_trace = true ]] |
---|
| 2089 | then |
---|
| 2090 | (( i = 0 )) |
---|
| 2091 | while (( i < iin )) |
---|
| 2092 | do |
---|
| 2093 | (( i = i + 1 )) |
---|
| 2094 | if (( i == 1 )) |
---|
| 2095 | then |
---|
| 2096 | printf "\n\n >>> INPUT-file assignments:\n" |
---|
| 2097 | fi |
---|
| 2098 | printf "\n ${localin[$i]} : ${absnamein[$i]}" |
---|
| 2099 | done |
---|
| 2100 | (( i = 0 )) |
---|
| 2101 | while (( i < iout )) |
---|
| 2102 | do |
---|
| 2103 | (( i = i + 1 )) |
---|
| 2104 | if (( i == 1 )) |
---|
| 2105 | then |
---|
| 2106 | printf "\n\n >>> OUTPUT-file assignments:\n" |
---|
| 2107 | fi |
---|
| 2108 | printf "\n ${localout[$i]} : ${pathout[$i]}" |
---|
| 2109 | done |
---|
| 2110 | (( i = 0 )) |
---|
| 2111 | while (( i < iic )) |
---|
| 2112 | do |
---|
| 2113 | (( i = i + 1 )) |
---|
| 2114 | if (( i == 1 )) |
---|
| 2115 | then |
---|
| 2116 | printf "\n\n >>> INPUT-commands:\n" |
---|
| 2117 | fi |
---|
| 2118 | printf "\n ${in_command[$i]}" |
---|
| 2119 | done |
---|
| 2120 | (( i = 0 )) |
---|
| 2121 | while (( i < ioc )) |
---|
| 2122 | do |
---|
| 2123 | (( i = i + 1 )) |
---|
| 2124 | if (( i == 1 )) |
---|
| 2125 | then |
---|
| 2126 | printf "\n\n >>> OUTPUT-commands:\n" |
---|
| 2127 | fi |
---|
| 2128 | printf "\n ${out_command[$i]}" |
---|
| 2129 | done |
---|
| 2130 | fi |
---|
| 2131 | |
---|
| 2132 | |
---|
| 2133 | # ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE |
---|
| 2134 | if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]] |
---|
| 2135 | then |
---|
| 2136 | antwort=dummy |
---|
| 2137 | printf "\n\n" |
---|
| 2138 | while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]] |
---|
| 2139 | do |
---|
| 2140 | printf " >>> everything o.k. (y/n) ? " |
---|
| 2141 | read antwort |
---|
| 2142 | done |
---|
| 2143 | if [[ $antwort = n || $antwort = N ]] |
---|
| 2144 | then |
---|
| 2145 | locat=user_abort; (( iec = 0 )); exit |
---|
| 2146 | fi |
---|
| 2147 | if [[ $do_batch = true ]] |
---|
| 2148 | then |
---|
| 2149 | printf " >>> batch-job will be created and submitted" |
---|
| 2150 | else |
---|
| 2151 | if [[ $local_compile = false ]] |
---|
| 2152 | then |
---|
| 2153 | printf " >>> MRUN will now continue to execute on this machine" |
---|
| 2154 | else |
---|
| 2155 | printf " >>> a test compilation will now be carried out on this machine" |
---|
| 2156 | fi |
---|
| 2157 | fi |
---|
| 2158 | fi |
---|
| 2159 | |
---|
| 2160 | |
---|
| 2161 | |
---|
| 2162 | |
---|
| 2163 | # FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE- |
---|
| 2164 | # CHENDE AKTIONEN DURCHGEFUEHRT |
---|
| 2165 | if [[ $do_batch = false ]] |
---|
| 2166 | then |
---|
| 2167 | |
---|
| 2168 | |
---|
| 2169 | # TEMPORAEREN KATALOG ERZEUGEN |
---|
| 2170 | mkdir -p $TEMPDIR |
---|
| 2171 | chmod go+rx $TEMPDIR |
---|
| 2172 | tmpcreate=true |
---|
| 2173 | |
---|
| 2174 | |
---|
| 2175 | # SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN |
---|
| 2176 | # TEMPORAERES VERZEICHNIS KOPIEREN |
---|
| 2177 | if [[ $do_compile = true ]] |
---|
| 2178 | then |
---|
| 2179 | |
---|
| 2180 | # ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING |
---|
| 2181 | # CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS) |
---|
| 2182 | if [[ $localhost = nech ]] |
---|
| 2183 | then |
---|
| 2184 | TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung |
---|
| 2185 | if mkdir -p $TEMPDIR_COMPILE |
---|
| 2186 | then |
---|
| 2187 | printf "\n *** \"$TEMPDIR_COMPILE\" " |
---|
| 2188 | printf "\n is generated as temporary directory for cross compiling\n" |
---|
| 2189 | else |
---|
| 2190 | printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" " |
---|
| 2191 | printf "\n needed for cross compilation failed" |
---|
| 2192 | locat=compile |
---|
| 2193 | exit |
---|
| 2194 | fi |
---|
| 2195 | else |
---|
| 2196 | TEMPDIR_COMPILE=$TEMPDIR |
---|
| 2197 | fi |
---|
| 2198 | |
---|
| 2199 | |
---|
[82] | 2200 | # PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN |
---|
| 2201 | line="" |
---|
| 2202 | grep "%depository_path" $config_file > tmp_mrun |
---|
| 2203 | while read line |
---|
| 2204 | do |
---|
| 2205 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] |
---|
| 2206 | then |
---|
| 2207 | if [[ "$(echo $line | cut -d" " -s -f3)" = "" ]] |
---|
[1] | 2208 | then |
---|
[82] | 2209 | global_depository_path=`echo $line | cut -d" " -s -f2` |
---|
[1] | 2210 | fi |
---|
[82] | 2211 | fi |
---|
| 2212 | done < tmp_mrun |
---|
[1] | 2213 | |
---|
[82] | 2214 | line="" |
---|
| 2215 | grep " $localhost" $config_file | grep "%depository_path" > tmp_mrun |
---|
| 2216 | while read line |
---|
| 2217 | do |
---|
| 2218 | if [[ "$line" != "" && $(echo $line | cut -c1) != "#" ]] |
---|
[1] | 2219 | then |
---|
[82] | 2220 | local_depository_path=`echo $line | cut -d" " -s -f2` |
---|
[1] | 2221 | fi |
---|
[82] | 2222 | done < tmp_mrun |
---|
[1] | 2223 | |
---|
[82] | 2224 | if [[ "$local_depository_path" = "" ]] |
---|
| 2225 | then |
---|
| 2226 | if [[ "$global_depository_path" != "" ]] |
---|
[1] | 2227 | then |
---|
[82] | 2228 | local_depository_path=$global_depository_path |
---|
[1] | 2229 | else |
---|
[82] | 2230 | printf "\n\n +++ no depository path found in configuration file" |
---|
| 2231 | printf "\n for local host \"$localhost\" " |
---|
| 2232 | printf "\n please set \"\%depository_path\" in configuration file\n" |
---|
| 2233 | locat=config_file; exit |
---|
[1] | 2234 | fi |
---|
[82] | 2235 | fi |
---|
| 2236 | eval local_depository_path=$local_depository_path |
---|
[1] | 2237 | |
---|
[82] | 2238 | basename=`print $mainprog | cut -f1 -d"."` |
---|
| 2239 | eval make_depository=${local_depository_path}/${basename}_current_version.tar |
---|
| 2240 | if [[ ! -f $make_depository ]] |
---|
| 2241 | then |
---|
| 2242 | printf "\n" |
---|
| 2243 | printf "\n *** WARNING: make depository \"$make_depository\" not found" |
---|
| 2244 | printf "\n \"make\" will fail, if the Makefile or other source files are missing\n" |
---|
| 2245 | else |
---|
| 2246 | cp $make_depository $TEMPDIR_COMPILE |
---|
[1] | 2247 | cd $TEMPDIR_COMPILE |
---|
[82] | 2248 | tar -xf $make_depository > /dev/null 2>&1 |
---|
[1] | 2249 | cd - > /dev/null |
---|
| 2250 | fi |
---|
[82] | 2251 | |
---|
| 2252 | cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE |
---|
| 2253 | |
---|
| 2254 | # FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN |
---|
| 2255 | # ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS |
---|
| 2256 | # MAKEFILE EINTRAGEN |
---|
| 2257 | cd $TEMPDIR_COMPILE |
---|
| 2258 | interface_file=`grep -l "END SUBROUTINE user_parin" $source_list` |
---|
| 2259 | if [[ "$interface_file" != "" ]] |
---|
| 2260 | then |
---|
| 2261 | interface_file=`echo $interface_file | cut -d"." -f1` |
---|
| 2262 | mv Makefile Makefile_old |
---|
| 2263 | sed "s/user_interface/$interface_file/g" Makefile_old > Makefile |
---|
| 2264 | fi |
---|
| 2265 | cd - > /dev/null |
---|
[1] | 2266 | else |
---|
| 2267 | cp $executable ${TEMPDIR}/a.out |
---|
| 2268 | fi |
---|
| 2269 | |
---|
| 2270 | |
---|
| 2271 | # WECHSEL IN TEMPORAEREN KATALOG |
---|
| 2272 | cd $TEMPDIR |
---|
| 2273 | printf "\n *** changed to temporary directory: $TEMPDIR" |
---|
| 2274 | |
---|
| 2275 | |
---|
| 2276 | # OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN |
---|
| 2277 | # DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN |
---|
| 2278 | # WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU |
---|
| 2279 | # ERMITTELN |
---|
| 2280 | (( i = 0 )) |
---|
| 2281 | while (( i < iout )) |
---|
| 2282 | do |
---|
| 2283 | (( i = i + 1 )) |
---|
| 2284 | if [[ "${actionout[$i]}" = tr || "${actionout[$i]}" = tra || "${actionout[$i]}" = trpe ]] |
---|
| 2285 | then |
---|
| 2286 | printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS |
---|
| 2287 | else |
---|
| 2288 | printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS |
---|
| 2289 | fi |
---|
| 2290 | done |
---|
| 2291 | |
---|
| 2292 | |
---|
| 2293 | # EVTL. UEBERSETZUNGSAKTIONEN STARTEN |
---|
| 2294 | if [[ $do_compile = true ]] |
---|
| 2295 | then |
---|
| 2296 | |
---|
| 2297 | |
---|
| 2298 | # COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS) |
---|
[82] | 2299 | printf "\n\n\n *** compilation starts \n$striche\n" |
---|
| 2300 | printf " *** compilation with make using following options:\n" |
---|
| 2301 | printf " compilername: $compiler_name\n" |
---|
| 2302 | printf " options: $fopts\n" |
---|
| 2303 | printf " preprocessor-directives: $cpp_options \n" |
---|
| 2304 | printf " linker-options: $lopts \n" |
---|
| 2305 | printf " source code files: $source_list \n" |
---|
| 2306 | |
---|
| 2307 | if [[ $localhost = nech ]] |
---|
[1] | 2308 | then |
---|
[82] | 2309 | ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " |
---|
| 2310 | cp $TEMPDIR_COMPILE/a.out . |
---|
| 2311 | [[ $? != 0 ]] && compile_error=true |
---|
| 2312 | rm -rf $TEMPDIR_COMPILE |
---|
[197] | 2313 | elif [[ $localhost = lcsgib ]] |
---|
| 2314 | then |
---|
| 2315 | printf " compiler is called via ssh on \"bicegate\" \n" |
---|
| 2316 | ssh 130.73.232.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " |
---|
| 2317 | [[ ! -f a.out ]] && compile_error=true |
---|
| 2318 | continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN |
---|
| 2319 | elif [[ $localhost = lcsgih ]] |
---|
| 2320 | then |
---|
| 2321 | printf " compiler is called via ssh on \"hicegate\" \n" |
---|
| 2322 | ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 " |
---|
| 2323 | # ssh 130.75.4.102 -l $usern ". /usr/share/modules/init/bash; module load mvapich2; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 " |
---|
| 2324 | # print ". /usr/share/modules/init/bash; module load mpt; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" " | ssh ${usern}@130.75.4.102 2>&1 |
---|
| 2325 | [[ ! -f a.out ]] && compile_error=true |
---|
| 2326 | continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN |
---|
[1] | 2327 | else |
---|
[118] | 2328 | [[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls |
---|
[82] | 2329 | make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts" |
---|
| 2330 | fi |
---|
[1] | 2331 | |
---|
| 2332 | if [[ $? != 0 || "$compile_error" = true || "$module_compile_error" = true ]] |
---|
| 2333 | then |
---|
| 2334 | printf "\n +++ error occured while compiling or linking" |
---|
| 2335 | locat=compile |
---|
[181] | 2336 | |
---|
[182] | 2337 | # WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT! |
---|
[197] | 2338 | # if [[ $localhost != lcsgib && $localhost != lcsgih ]] |
---|
| 2339 | # then |
---|
[181] | 2340 | exit |
---|
[197] | 2341 | # else |
---|
| 2342 | # locat=normal |
---|
| 2343 | # fi |
---|
[1] | 2344 | else |
---|
| 2345 | printf "$striche\n *** compilation finished \n" |
---|
| 2346 | fi |
---|
| 2347 | fi |
---|
| 2348 | |
---|
| 2349 | |
---|
| 2350 | # FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG |
---|
| 2351 | if [[ $local_compile = true ]] |
---|
| 2352 | then |
---|
| 2353 | cd $HOME |
---|
| 2354 | rm -rf $TEMPDIR |
---|
| 2355 | locat=local_compile; exit |
---|
| 2356 | fi |
---|
| 2357 | |
---|
| 2358 | |
---|
| 2359 | # BEREITSTELLEN DER INPUT-DATEIEN |
---|
| 2360 | # SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN |
---|
| 2361 | (( i = 0 )) |
---|
| 2362 | while (( i < iin )) |
---|
| 2363 | do |
---|
| 2364 | (( i = i + 1 )) |
---|
| 2365 | if (( i == 1 )) |
---|
| 2366 | then |
---|
| 2367 | printf "\n\n *** providing INPUT-files:\n$striche" |
---|
| 2368 | fi |
---|
| 2369 | |
---|
| 2370 | |
---|
| 2371 | # OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN |
---|
| 2372 | if [[ "${transin[$i]}" = unavailable ]] |
---|
| 2373 | then |
---|
| 2374 | if [[ "${extin[$i]}" = "" || "${extin[$i]}" = " " ]] |
---|
| 2375 | then |
---|
| 2376 | printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" " |
---|
| 2377 | printf "\n is not available!" |
---|
| 2378 | else |
---|
| 2379 | printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" " |
---|
| 2380 | printf "\n is not available!" |
---|
| 2381 | fi |
---|
| 2382 | continue |
---|
| 2383 | fi |
---|
| 2384 | |
---|
| 2385 | # PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR |
---|
| 2386 | files_for_pes=false; datentyp=file |
---|
| 2387 | if [[ "${actionin[$i]}" = pe && -n $numprocs ]] |
---|
| 2388 | then |
---|
| 2389 | files_for_pes=true; datentyp=directory |
---|
| 2390 | actionin[$i]="" |
---|
| 2391 | elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]] |
---|
| 2392 | then |
---|
| 2393 | actionin[$i]="" |
---|
| 2394 | elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]] |
---|
| 2395 | then |
---|
| 2396 | files_for_pes=true; datentyp=directory |
---|
| 2397 | actionin[$i]="ar" |
---|
| 2398 | elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]] |
---|
| 2399 | then |
---|
| 2400 | actionin[$i]="ar" |
---|
| 2401 | elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]] |
---|
| 2402 | then |
---|
| 2403 | files_for_pes=true; datentyp=directory |
---|
| 2404 | actionin[$i]="fl" |
---|
| 2405 | elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]] |
---|
| 2406 | then |
---|
| 2407 | actionin[$i]="fl" |
---|
| 2408 | fi |
---|
| 2409 | |
---|
| 2410 | if [[ $files_for_pes = true ]] |
---|
| 2411 | then |
---|
| 2412 | printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}" |
---|
| 2413 | else |
---|
| 2414 | printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}" |
---|
| 2415 | fi |
---|
| 2416 | |
---|
| 2417 | # INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT, |
---|
| 2418 | # OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN |
---|
| 2419 | # IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV- |
---|
| 2420 | # SERVER ZU HOLEN |
---|
| 2421 | if [[ "${actionin[$i]}" = fl ]] |
---|
| 2422 | then |
---|
| 2423 | printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !" |
---|
| 2424 | if [[ $files_for_pes = false ]] |
---|
| 2425 | then |
---|
| 2426 | if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]] |
---|
| 2427 | then |
---|
| 2428 | ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]} |
---|
| 2429 | got_tmp[$i]=true |
---|
| 2430 | elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]] |
---|
| 2431 | then |
---|
| 2432 | printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !" |
---|
| 2433 | printf "\n *** trying to use backup copy in \"$WORK\" " |
---|
| 2434 | cp $WORK/${frelin[$i]} ${localin[$i]} |
---|
| 2435 | else |
---|
| 2436 | printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" " |
---|
| 2437 | printf "\n or \"$tmp_data_catalog\" does not exist!" |
---|
| 2438 | printf "\n *** trying to get copy from archive" |
---|
| 2439 | actionin[$i]=ar |
---|
| 2440 | fi |
---|
| 2441 | else |
---|
| 2442 | if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]] |
---|
| 2443 | then |
---|
| 2444 | mkdir ${localin[$i]} |
---|
[149] | 2445 | cd $tmp_data_catalog/${frelin[$i]} |
---|
| 2446 | for file in $(ls *) |
---|
| 2447 | do |
---|
| 2448 | ln $file $TEMPDIR/${localin[$i]} |
---|
| 2449 | done |
---|
| 2450 | cd $TEMPDIR |
---|
[1] | 2451 | got_tmp[$i]=true |
---|
| 2452 | elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]] |
---|
| 2453 | then |
---|
| 2454 | printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !" |
---|
| 2455 | printf "\n *** trying to use backup copy in \"$WORK\" " |
---|
| 2456 | cp -r $WORK/${frelin[$i]} ${localin[$i]} |
---|
| 2457 | else |
---|
| 2458 | printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" " |
---|
| 2459 | printf "\n or \"$tmp_data_catalog\" does not exist!" |
---|
| 2460 | printf "\n *** trying to get copy from archive" |
---|
| 2461 | actionin[$i]=ar |
---|
| 2462 | fi |
---|
| 2463 | fi |
---|
| 2464 | fi |
---|
| 2465 | |
---|
| 2466 | |
---|
| 2467 | # DATEI LIEGT AUF ARCHIV-SERVER |
---|
| 2468 | if [[ "${actionin[$i]}" = ar ]] |
---|
| 2469 | then |
---|
| 2470 | |
---|
| 2471 | if [[ $files_for_pes = false ]] |
---|
| 2472 | then |
---|
| 2473 | printf "\n file will be restored from archive-system ($archive_system)!" |
---|
| 2474 | else |
---|
| 2475 | printf "\n directory will be restored from archive-system ($archive_system)!" |
---|
| 2476 | fi |
---|
| 2477 | |
---|
| 2478 | file_restored=false |
---|
| 2479 | |
---|
| 2480 | if [[ $archive_system = asterix ]] |
---|
| 2481 | then |
---|
| 2482 | do_stagein=true |
---|
| 2483 | (( stagein_anz = 0 )) |
---|
| 2484 | while [[ $do_stagein = true ]] |
---|
| 2485 | do |
---|
| 2486 | if [[ $files_for_pes = false ]] |
---|
| 2487 | then |
---|
| 2488 | stagein -O ${frelin[$i]} > STAGEIN_OUTPUT |
---|
| 2489 | else |
---|
| 2490 | stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT |
---|
| 2491 | fi |
---|
| 2492 | cat STAGEIN_OUTPUT |
---|
| 2493 | if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]] |
---|
| 2494 | then |
---|
| 2495 | file_restored=true |
---|
| 2496 | do_stagein=false |
---|
| 2497 | else |
---|
| 2498 | (( stagein_anz = stagein_anz + 1 )) |
---|
| 2499 | if (( stagein_anz == 10 )) |
---|
| 2500 | then |
---|
| 2501 | printf "\n +++ stagein stoped after 10 tries" |
---|
| 2502 | locat=stage |
---|
| 2503 | exit |
---|
| 2504 | fi |
---|
| 2505 | printf "\n +++ restoring from archive failed, trying again:" |
---|
| 2506 | sleep 900 |
---|
| 2507 | fi |
---|
| 2508 | done |
---|
| 2509 | elif [[ $archive_system = DMF ]] |
---|
| 2510 | then |
---|
| 2511 | if [[ $files_for_pes = false ]] |
---|
| 2512 | then |
---|
| 2513 | printf "\n +++ restoring of single files impossible with $archive_system !\n" |
---|
| 2514 | locat=DMF |
---|
| 2515 | exit |
---|
| 2516 | else |
---|
| 2517 | find $ARCHIVE/${frelin[$i]} -type m -print | dmget |
---|
| 2518 | cp -r $ARCHIVE/${frelin[$i]} $PWD |
---|
| 2519 | file_restored=true |
---|
| 2520 | fi |
---|
| 2521 | elif [[ $archive_system = tivoli ]] |
---|
| 2522 | then |
---|
| 2523 | if [[ $files_for_pes = false ]] |
---|
| 2524 | then |
---|
| 2525 | if [[ $localhost = ibmh ]] |
---|
| 2526 | then |
---|
| 2527 | ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD" |
---|
| 2528 | else |
---|
| 2529 | ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD" |
---|
| 2530 | fi |
---|
| 2531 | else |
---|
| 2532 | (( inode = 0 )) |
---|
| 2533 | while (( inode < nodes )) |
---|
| 2534 | do |
---|
| 2535 | if [[ $localhost = ibmh ]] |
---|
| 2536 | then |
---|
| 2537 | ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar" |
---|
| 2538 | else |
---|
| 2539 | ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar" |
---|
| 2540 | fi |
---|
| 2541 | (( inode = inode + 1 )) |
---|
| 2542 | done |
---|
| 2543 | fi |
---|
| 2544 | file_restored=true |
---|
| 2545 | elif [[ $archive_system = ut ]] |
---|
| 2546 | then |
---|
| 2547 | if [[ $files_for_pes = false ]] |
---|
| 2548 | then |
---|
| 2549 | cp $UT/${frelin[$i]} . |
---|
| 2550 | else |
---|
| 2551 | (( inode = 0 )) |
---|
| 2552 | while (( inode < nodes )) |
---|
| 2553 | do |
---|
| 2554 | tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar |
---|
| 2555 | (( inode = inode + 1 )) |
---|
| 2556 | done |
---|
| 2557 | fi |
---|
| 2558 | file_restored=true |
---|
| 2559 | else |
---|
| 2560 | printf "\n +++ archive_system=\"$archive_system\" restore impossible!" |
---|
| 2561 | locat=rearchive |
---|
| 2562 | exit |
---|
| 2563 | fi |
---|
| 2564 | |
---|
| 2565 | if [[ $file_restored = true ]] |
---|
| 2566 | then |
---|
| 2567 | |
---|
| 2568 | # DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT |
---|
| 2569 | # SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST |
---|
| 2570 | [[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog |
---|
| 2571 | if [[ $files_for_pes = false ]] |
---|
| 2572 | then |
---|
| 2573 | ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]} |
---|
| 2574 | else |
---|
| 2575 | mkdir $tmp_data_catalog/${frelin[$i]} |
---|
| 2576 | ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]} |
---|
| 2577 | fi |
---|
| 2578 | got_tmp[$i]=true |
---|
| 2579 | |
---|
| 2580 | # DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN |
---|
| 2581 | mv ${frelin[$i]} ${localin[$i]} |
---|
| 2582 | |
---|
| 2583 | fi |
---|
| 2584 | fi |
---|
| 2585 | |
---|
| 2586 | |
---|
| 2587 | # DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS |
---|
| 2588 | if [[ "${actionin[$i]}" = "" || "${actionin[$i]}" = "di" || "${actionin[$i]}" = "npe" ]] |
---|
| 2589 | then |
---|
| 2590 | |
---|
| 2591 | if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]] |
---|
| 2592 | then |
---|
| 2593 | |
---|
| 2594 | # DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT |
---|
| 2595 | printf "\n file will be provided for $numprocs processors" |
---|
| 2596 | mkdir ${localin[$i]} |
---|
| 2597 | ival=$numprocs |
---|
| 2598 | (( ii = 0 )) |
---|
| 2599 | while (( ii <= ival-1 )) |
---|
| 2600 | do |
---|
| 2601 | if (( ii < 10 )) |
---|
| 2602 | then |
---|
| 2603 | cp ${absnamein[$i]} ${localin[$i]}/_000$ii |
---|
| 2604 | elif (( ii < 100 )) |
---|
| 2605 | then |
---|
| 2606 | cp ${absnamein[$i]} ${localin[$i]}/_00$ii |
---|
| 2607 | elif (( ii < 1000 )) |
---|
| 2608 | then |
---|
| 2609 | cp ${absnamein[$i]} ${localin[$i]}/_0$ii |
---|
| 2610 | else |
---|
| 2611 | cp ${absnamein[$i]} ${localin[$i]}/_$ii |
---|
| 2612 | fi |
---|
| 2613 | (( ii = ii + 1 )) |
---|
| 2614 | done |
---|
| 2615 | |
---|
| 2616 | else |
---|
| 2617 | |
---|
| 2618 | if [[ $files_for_pes = true ]] |
---|
| 2619 | then |
---|
| 2620 | |
---|
| 2621 | # DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN |
---|
| 2622 | # DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE |
---|
| 2623 | # KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN |
---|
| 2624 | # PER MOVE UMBENANNT WERDEN |
---|
| 2625 | printf "\n providing $numprocs files for the respective processors" |
---|
| 2626 | mkdir ${localin[$i]} |
---|
[183] | 2627 | if [[ $link_local_input = true ]] |
---|
| 2628 | then |
---|
| 2629 | printf " using ln -f\n" |
---|
| 2630 | cd ${absnamein[$i]} |
---|
| 2631 | for file in $(ls *) |
---|
| 2632 | do |
---|
| 2633 | ln -f $file ${localin[$i]} |
---|
| 2634 | done |
---|
| 2635 | cd $TEMPDIR |
---|
| 2636 | fi |
---|
| 2637 | # If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r" |
---|
| 2638 | if [[ ! -f "${localin[$i]}/_0000" ]] |
---|
| 2639 | then |
---|
| 2640 | if [[ $link_local_input = true ]] |
---|
| 2641 | then |
---|
| 2642 | printf " ln failed for .../_0000, using cp...\n" |
---|
| 2643 | fi |
---|
| 2644 | cp -r ${absnamein[$i]}/* ${localin[$i]} |
---|
| 2645 | fi |
---|
[1] | 2646 | |
---|
| 2647 | else |
---|
| 2648 | # BEREITSTELLUNG AUF EINPROZESSORRECHNERN |
---|
[183] | 2649 | if [[ $link_local_input = true ]] |
---|
| 2650 | then |
---|
| 2651 | printf " using ln -f\n" |
---|
| 2652 | ln -f ${absnamein[$i]} ${localin[$i]} |
---|
| 2653 | fi |
---|
| 2654 | # If "ln -f" fails of if "$link_local_input = false" do a normal "cp" |
---|
| 2655 | if [[ ! -f "${localin[$i]}" ]] |
---|
| 2656 | then |
---|
| 2657 | if [[ $link_local_input = true ]] |
---|
| 2658 | then |
---|
| 2659 | printf " ln failed, using cp...\n" |
---|
| 2660 | fi |
---|
| 2661 | cp ${absnamein[$i]} ${localin[$i]} |
---|
| 2662 | fi |
---|
[1] | 2663 | fi |
---|
| 2664 | fi |
---|
| 2665 | fi |
---|
| 2666 | |
---|
| 2667 | done |
---|
| 2668 | if (( i != 0 )) |
---|
| 2669 | then |
---|
| 2670 | printf "\n$striche\n *** all INPUT-files provided \n" |
---|
| 2671 | fi |
---|
| 2672 | |
---|
| 2673 | |
---|
| 2674 | # NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU |
---|
| 2675 | # LESEN VON PALM) |
---|
| 2676 | cat > ENVPAR << %%END%% |
---|
| 2677 | &envpar run_identifier = '$fname', host = '$localhost', |
---|
| 2678 | write_binary = '$write_binary', tasks_per_node = $tasks_per_node, |
---|
[75] | 2679 | maximum_cpu_time_allowed = ${cpumax}., |
---|
| 2680 | revision = '$global_revision' / |
---|
[1] | 2681 | |
---|
| 2682 | %%END%% |
---|
| 2683 | |
---|
| 2684 | |
---|
| 2685 | # EVENTUELLE INPUT-KOMMANDOS ABARBEITEN |
---|
| 2686 | (( i = 0 )) |
---|
| 2687 | while (( i < iic )) |
---|
| 2688 | do |
---|
| 2689 | (( i = i + 1 )) |
---|
| 2690 | if (( i == 1 )) |
---|
| 2691 | then |
---|
| 2692 | printf "\n\n *** execution of INPUT-commands:\n$striche" |
---|
| 2693 | fi |
---|
| 2694 | printf "\n >>> ${in_command[$i]}" |
---|
| 2695 | eval ${in_command[$i]} |
---|
| 2696 | if (( i == iic )) |
---|
| 2697 | then |
---|
| 2698 | printf "\n$striche\n" |
---|
| 2699 | fi |
---|
| 2700 | done |
---|
| 2701 | |
---|
| 2702 | |
---|
| 2703 | # VERBLEIBENDE CPU-ZEIT BERECHNEN |
---|
| 2704 | cpurest=${cpumax}. |
---|
| 2705 | |
---|
| 2706 | |
---|
| 2707 | # PROGRAMMSTART |
---|
| 2708 | printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n" |
---|
| 2709 | PATH=$PATH:$TEMPDIR |
---|
| 2710 | |
---|
| 2711 | if [[ "$cond1" = debug || "$cond2" = debug ]] |
---|
| 2712 | then |
---|
| 2713 | if [[ "$ENVIRONMENT" = BATCH ]] |
---|
| 2714 | then |
---|
| 2715 | printf "\n +++ debug is allowed in interactive mode only" |
---|
| 2716 | locat=debug |
---|
| 2717 | exit |
---|
| 2718 | fi |
---|
[5] | 2719 | if [[ $localhost = decalpha ]] |
---|
[1] | 2720 | then |
---|
| 2721 | dxladebug a.out |
---|
| 2722 | elif [[ $localhost = ibmb || $localhost = ibmh ]] |
---|
| 2723 | then |
---|
| 2724 | |
---|
| 2725 | # SETUP THE IBM MPI ENVIRONMENT |
---|
| 2726 | export MP_SHARED_MEMORY=yes |
---|
| 2727 | export AIXTHREADS_SCOPE=S |
---|
| 2728 | export OMP_NUM_THREADS=$threads_per_task |
---|
| 2729 | export AUTHSTATE=files |
---|
| 2730 | export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT |
---|
| 2731 | |
---|
| 2732 | # FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW |
---|
| 2733 | export MP_ADAPTER_USE=shared |
---|
| 2734 | export MP_CPU_USE=multiple |
---|
| 2735 | export MP_TIMEOUT=1200 |
---|
| 2736 | |
---|
| 2737 | unset MP_TASK_AFFINITY |
---|
| 2738 | |
---|
| 2739 | # SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION |
---|
| 2740 | #(( ii = 1 )) |
---|
| 2741 | #while (( ii <= $numprocs )) |
---|
| 2742 | #do |
---|
| 2743 | # echo $localhost_realname >> hostfile |
---|
| 2744 | # (( ii = ii + 1 )) |
---|
| 2745 | #done |
---|
| 2746 | #export MP_HOSTFILE=hostfile |
---|
| 2747 | |
---|
| 2748 | if [[ "$LOADLBATCH" = yes ]] |
---|
| 2749 | then |
---|
| 2750 | totalview poe a.out $ROPTS |
---|
| 2751 | else |
---|
| 2752 | echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS |
---|
| 2753 | export TVDSVRLAUNCHCMD=ssh |
---|
| 2754 | totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS |
---|
| 2755 | fi |
---|
| 2756 | else |
---|
| 2757 | printf "\n +++ no debug available on \"$localhost\" " |
---|
| 2758 | printf "\n or not implemented in mrun so far" |
---|
| 2759 | locat=debug |
---|
| 2760 | exit |
---|
| 2761 | fi |
---|
| 2762 | else |
---|
| 2763 | if [[ -n $numprocs ]] |
---|
| 2764 | then |
---|
| 2765 | |
---|
| 2766 | # RUNNING THE PROGRAM ON PARALLEL MACHINES |
---|
| 2767 | if [[ $(echo $host | cut -c1-3) = ibm ]] |
---|
| 2768 | then |
---|
| 2769 | # SETUP THE IBM MPI ENVIRONMENT |
---|
| 2770 | export MP_SHARED_MEMORY=yes |
---|
| 2771 | export AIXTHREAD_SCOPE=S |
---|
| 2772 | export OMP_NUM_THREADS=$threads_per_task |
---|
| 2773 | export XLSMPOPTS="spins=0:yields=0:stack=20000000" |
---|
| 2774 | export AUTHSTATE=files |
---|
| 2775 | export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT |
---|
| 2776 | # export MP_PRINTENV=yes |
---|
| 2777 | |
---|
| 2778 | # TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION |
---|
| 2779 | # ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG |
---|
| 2780 | export MP_WAIT_MODE=poll |
---|
| 2781 | [[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes |
---|
| 2782 | # export MP_EAGER_LIMIT=65535 |
---|
| 2783 | |
---|
| 2784 | # # TESTWEISE FUER TURBOMPI (JAN 05) |
---|
| 2785 | # export MPJ_MTAB=128 |
---|
| 2786 | # export MPJ_ALLTOALL=1 |
---|
| 2787 | # export MPJ_ALLTOALLV=1 |
---|
| 2788 | |
---|
| 2789 | if [[ "$LOADLBATCH" = yes ]] |
---|
| 2790 | then |
---|
| 2791 | printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n" |
---|
| 2792 | if [[ "$cond1" = hpmcount || "$cond2" = hpmcount ]] |
---|
| 2793 | then |
---|
[102] | 2794 | /opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS |
---|
[1] | 2795 | else |
---|
[102] | 2796 | poe ./a.out $ROPTS |
---|
[1] | 2797 | fi |
---|
| 2798 | else |
---|
| 2799 | if [[ $localhost = ibmb || $localhost = ibmh || $localhost = ibms ]] |
---|
| 2800 | then |
---|
[102] | 2801 | poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS |
---|
[1] | 2802 | elif [[ $localhost = ibmy ]] |
---|
| 2803 | then |
---|
| 2804 | if [[ -f $hostfile ]] |
---|
| 2805 | then |
---|
| 2806 | cp $hostfile hostfile |
---|
| 2807 | else |
---|
| 2808 | (( ii = 1 )) |
---|
| 2809 | while (( ii <= $numprocs )) |
---|
| 2810 | do |
---|
| 2811 | echo $localhost_realname >> hostfile |
---|
| 2812 | (( ii = ii + 1 )) |
---|
| 2813 | done |
---|
| 2814 | fi |
---|
| 2815 | export MP_HOSTFILE=hostfile |
---|
[102] | 2816 | ./a.out -procs $tasks_per_node $ROPTS |
---|
[1] | 2817 | else |
---|
| 2818 | if [[ "$host_file" = "" ]] |
---|
| 2819 | then |
---|
| 2820 | printf "\n +++ no hostfile given in configuration file" |
---|
| 2821 | locat=config_file |
---|
| 2822 | exit |
---|
| 2823 | else |
---|
| 2824 | eval host_file=$host_file |
---|
| 2825 | fi |
---|
| 2826 | export MP_HOSTFILE=$host_file |
---|
[102] | 2827 | poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS |
---|
[1] | 2828 | fi |
---|
| 2829 | fi |
---|
| 2830 | elif [[ $host = nech || $host = neck ]] |
---|
| 2831 | then |
---|
| 2832 | (( ii = nodes )) |
---|
| 2833 | if [[ $ii = 1 ]] |
---|
| 2834 | then |
---|
| 2835 | export F_ERRCNT=0 # acceptable number of errors before program is stopped |
---|
| 2836 | export MPIPROGINF=YES |
---|
[61] | 2837 | # export F_TRACE=YES|FMT1|FMT2 # output of ftrace informations to job protocol |
---|
[1] | 2838 | echo "*** execution on single node with mpirun" |
---|
[102] | 2839 | mpirun -np $numprocs ./a.out $ROPTS |
---|
[1] | 2840 | else |
---|
| 2841 | (( i = 0 )) |
---|
| 2842 | while (( i < ii )) |
---|
| 2843 | do |
---|
| 2844 | echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config |
---|
| 2845 | (( i = i + 1 )) |
---|
| 2846 | done |
---|
| 2847 | |
---|
| 2848 | echo "#!/bin/sh" > mpi_exec_shell |
---|
| 2849 | echo " " >> mpi_exec_shell |
---|
| 2850 | echo "set -u" >> mpi_exec_shell |
---|
| 2851 | echo "F_ERRCNT=0" >> mpi_exec_shell |
---|
| 2852 | echo "MPIPROGINV=YES" >> mpi_exec_shell |
---|
| 2853 | echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell |
---|
| 2854 | echo "cpurest=$cpurest" >> mpi_exec_shell |
---|
| 2855 | echo "fname=$fname" >> mpi_exec_shell |
---|
| 2856 | echo "localhost=$localhost" >> mpi_exec_shell |
---|
| 2857 | echo "return_addres=$return_addres" >> mpi_exec_shell |
---|
| 2858 | echo "return_username=$return_username" >> mpi_exec_shell |
---|
| 2859 | echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell |
---|
| 2860 | echo "write_binary=$write_binary" >> mpi_exec_shell |
---|
| 2861 | echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell |
---|
| 2862 | echo " " >> mpi_exec_shell |
---|
| 2863 | echo "export F_ERRCNT" >> mpi_exec_shell |
---|
| 2864 | echo "export MPIPROGINV" >> mpi_exec_shell |
---|
| 2865 | echo "export OMP_NUM_THREADS" >> mpi_exec_shell |
---|
| 2866 | echo "export cpurest" >> mpi_exec_shell |
---|
| 2867 | echo "export fname" >> mpi_exec_shell |
---|
| 2868 | echo "export localhost" >> mpi_exec_shell |
---|
| 2869 | echo "export return_addres" >> mpi_exec_shell |
---|
| 2870 | echo "export return_username" >> mpi_exec_shell |
---|
| 2871 | echo "export tasks_per_node" >> mpi_exec_shell |
---|
| 2872 | echo "export write_binary" >> mpi_exec_shell |
---|
| 2873 | echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell |
---|
| 2874 | echo " " >> mpi_exec_shell |
---|
[102] | 2875 | echo "exec ./a.out" >> mpi_exec_shell |
---|
[1] | 2876 | |
---|
| 2877 | chmod u+x mpi_exec_shell |
---|
| 2878 | export MPIPROGINF=YES |
---|
| 2879 | mpirun -f multinode_config & |
---|
| 2880 | wait |
---|
| 2881 | |
---|
| 2882 | fi |
---|
[82] | 2883 | elif [[ $(echo $host | cut -c1-2) = lc && $host != lctit ]] |
---|
[1] | 2884 | then |
---|
| 2885 | |
---|
| 2886 | # COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT |
---|
| 2887 | # DOES NOT EXIST |
---|
[179] | 2888 | if [[ $host != lcsgih && $host != lcsgib ]] |
---|
[1] | 2889 | then |
---|
[179] | 2890 | if [[ -f $hostfile ]] |
---|
| 2891 | then |
---|
| 2892 | cp $hostfile hostfile |
---|
| 2893 | else |
---|
| 2894 | (( ii = 1 )) |
---|
| 2895 | while (( ii <= $numprocs / $threads_per_task )) |
---|
| 2896 | do |
---|
| 2897 | echo $localhost_realname >> hostfile |
---|
| 2898 | (( ii = ii + 1 )) |
---|
| 2899 | done |
---|
| 2900 | fi |
---|
| 2901 | eval zeile=\"`head -n $ii hostfile`\" |
---|
| 2902 | printf "\n *** running on: $zeile" |
---|
[1] | 2903 | fi |
---|
[179] | 2904 | |
---|
[1] | 2905 | (( ii = $numprocs / $threads_per_task )) |
---|
| 2906 | export OMP_NUM_THREADS=$threads_per_task |
---|
[179] | 2907 | echo "OMP_NUM_THREADS=$OMP_NUM_THREADS" |
---|
[1] | 2908 | if [[ $threads_per_task != 1 ]] |
---|
| 2909 | then |
---|
| 2910 | printf "\n threads per task: $threads_per_task" |
---|
| 2911 | fi |
---|
[102] | 2912 | if [[ $run_coupled_model = false ]] |
---|
[1] | 2913 | then |
---|
[102] | 2914 | printf "\n\n" |
---|
[179] | 2915 | if [[ $host = lcsgih || $host = lcsgib ]] |
---|
[164] | 2916 | then |
---|
[197] | 2917 | # ulimit -s 300000 # A too large stack size causes problems |
---|
[196] | 2918 | # export MV2_NUM_PORTS=2 |
---|
[181] | 2919 | # export MV2_CPU_MAPPING=0:1:2:3 |
---|
[197] | 2920 | # mpiexec ./a.out $ROPTS |
---|
| 2921 | mpiexec_mpt -np $ii ./a.out $ROPTS |
---|
[179] | 2922 | elif [[ $host = lcxt4 ]] |
---|
| 2923 | then |
---|
[164] | 2924 | aprun -n $ii -N $tasks_per_node a.out $ROPTS |
---|
| 2925 | else |
---|
[172] | 2926 | echo "no_coupling" > runfile_atmos |
---|
| 2927 | mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS |
---|
[164] | 2928 | fi |
---|
[1] | 2929 | else |
---|
[164] | 2930 | |
---|
[206] | 2931 | # currently there is no full MPI-2 support on ICE and XT4 |
---|
| 2932 | (( iia = $numprocs_atmos / $threads_per_task )) |
---|
| 2933 | (( iio = $numprocs_ocean / $threads_per_task )) |
---|
| 2934 | printf "\n coupled run ($iia atmosphere, $iio ocean)" |
---|
| 2935 | printf "\n using $coupled_mode coupling" |
---|
[102] | 2936 | printf "\n\n" |
---|
[164] | 2937 | |
---|
[206] | 2938 | if [[ $coupled_mode = "mpi2" ]] |
---|
[164] | 2939 | then |
---|
[206] | 2940 | echo "atmosphere_to_ocean $iia $iio" > runfile_atmos |
---|
| 2941 | echo "ocean_to_atmosphere $iia $iio" > runfile_ocean |
---|
| 2942 | if [[ $host = lcsgih || $host = lcsgib ]] |
---|
| 2943 | then |
---|
[197] | 2944 | |
---|
[206] | 2945 | mpiexec_mpt -np $iia ./palm $ROPTS < runfile_atmos & |
---|
| 2946 | mpiexec_mpt -np $iio ./palm $ROPTS < runfile_ocean & |
---|
[197] | 2947 | |
---|
[206] | 2948 | elif [[ $host = lcxt4 ]] |
---|
| 2949 | then |
---|
[197] | 2950 | |
---|
[206] | 2951 | aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS & |
---|
| 2952 | aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS & |
---|
| 2953 | |
---|
| 2954 | else |
---|
| 2955 | # WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS |
---|
| 2956 | mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos & |
---|
| 2957 | mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean & |
---|
| 2958 | # mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS & |
---|
| 2959 | # mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS & |
---|
| 2960 | fi |
---|
| 2961 | wait |
---|
| 2962 | |
---|
[164] | 2963 | else |
---|
| 2964 | |
---|
[206] | 2965 | echo "coupled_run $iia $iio" > runfile_atmos |
---|
| 2966 | if [[ $host = lcsgih || $host = lcsgib ]] |
---|
| 2967 | then |
---|
| 2968 | |
---|
| 2969 | mpiexec_mpt -np $ii a.out $ROPTS < runfile_atmos |
---|
| 2970 | |
---|
| 2971 | elif [[ $host = lcxt4 ]] |
---|
| 2972 | then |
---|
| 2973 | |
---|
| 2974 | aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS |
---|
| 2975 | |
---|
| 2976 | fi |
---|
| 2977 | wait |
---|
[164] | 2978 | fi |
---|
[102] | 2979 | |
---|
| 2980 | # if [[ $scirocco = true ]] |
---|
| 2981 | # then |
---|
| 2982 | # mpiexec -machinefile hostfile -n $ii a.out $ROPTS |
---|
| 2983 | # else |
---|
| 2984 | # mpirun -machinefile hostfile -np $ii a.out $ROPTS |
---|
| 2985 | # fi |
---|
[206] | 2986 | fi |
---|
[1] | 2987 | elif [[ $host = decalpha ]] |
---|
| 2988 | then |
---|
[102] | 2989 | dmpirun -np $numprocs a.out $ROPTS |
---|
[1] | 2990 | elif [[ $host = lctit ]] |
---|
| 2991 | then |
---|
| 2992 | export runfile=runfile.$kennung |
---|
| 2993 | |
---|
| 2994 | echo "cd $PWD" > $runfile |
---|
| 2995 | echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile |
---|
| 2996 | echo "export cpurest=$cpurest" >> $runfile |
---|
| 2997 | echo "export fname=$fname" >> $runfile |
---|
| 2998 | echo "export localhost=$localhost" >> $runfile |
---|
| 2999 | echo "export return_addres=$return_addres" >> $runfile |
---|
| 3000 | echo "export return_username=$return_username" >> $runfile |
---|
| 3001 | echo "export tasks_per_node=$tasks_per_node" >> $runfile |
---|
| 3002 | echo "export write_binary=$write_binary" >> $runfile |
---|
| 3003 | echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile |
---|
| 3004 | echo "./a.out" >> $runfile |
---|
| 3005 | chmod u+x $runfile |
---|
| 3006 | |
---|
| 3007 | if [[ "$QUEUE" = interactive ]] |
---|
| 3008 | then |
---|
[102] | 3009 | mpirun -np $numprocs a.out $ROPTS |
---|
[1] | 3010 | else |
---|
[127] | 3011 | (( mem_tsubame = $memory / 1024.0 )) |
---|
| 3012 | echo "Memory for Tsubame for each process in GB:", $mem_tsubame |
---|
[118] | 3013 | # n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS |
---|
[126] | 3014 | /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS |
---|
[1] | 3015 | fi |
---|
| 3016 | |
---|
| 3017 | rm $runfile |
---|
| 3018 | else |
---|
[102] | 3019 | mpprun -n $numprocs a.out $ROPTS |
---|
[1] | 3020 | fi |
---|
| 3021 | [[ $? != 0 ]] && execution_error=true |
---|
| 3022 | |
---|
| 3023 | |
---|
| 3024 | # PERFORMANCE-AUSWERTUNG MIT APPRENTICE |
---|
| 3025 | if [[ "$cond1" = apprentice || "$cond2" = apprentice ]] |
---|
| 3026 | then |
---|
| 3027 | apprentice |
---|
| 3028 | fi |
---|
| 3029 | else |
---|
[102] | 3030 | a.out $ROPTS |
---|
[1] | 3031 | fi |
---|
| 3032 | fi |
---|
| 3033 | if [[ $? != 0 || $execution_error = true ]] |
---|
| 3034 | then |
---|
| 3035 | |
---|
| 3036 | # ABBRUCH BEI LAUFZEITFEHLER |
---|
[102] | 3037 | # [[ ! ( "$cond1" = debug || "$cond2" = debug ) ]] && cat aout_output* |
---|
[1] | 3038 | printf "\n +++ runtime error occured" |
---|
| 3039 | locat=execution |
---|
| 3040 | exit |
---|
| 3041 | else |
---|
[102] | 3042 | # [[ ! ( "$cond1" = debug || "$cond2" = debug ) ]] && cat aout_output* |
---|
[1] | 3043 | printf "\n$striche\n *** execution finished \n" |
---|
| 3044 | fi |
---|
| 3045 | |
---|
| 3046 | |
---|
| 3047 | |
---|
| 3048 | # EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN |
---|
| 3049 | (( i = 0 )) |
---|
| 3050 | while (( i < ioc )) |
---|
| 3051 | do |
---|
| 3052 | (( i = i + 1 )) |
---|
| 3053 | if (( i == 1 )) |
---|
| 3054 | then |
---|
| 3055 | printf "\n\n *** execution of OUTPUT-commands:\n$striche" |
---|
| 3056 | fi |
---|
| 3057 | printf "\n >>> ${out_command[$i]}" |
---|
| 3058 | eval ${out_command[$i]} |
---|
| 3059 | if (( i == ioc )) |
---|
| 3060 | then |
---|
| 3061 | printf "\n$striche\n" |
---|
| 3062 | fi |
---|
| 3063 | done |
---|
| 3064 | |
---|
| 3065 | |
---|
| 3066 | # EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN |
---|
| 3067 | if [[ $do_trace = true ]] |
---|
| 3068 | then |
---|
| 3069 | printf "\n\n" |
---|
| 3070 | ls -al |
---|
| 3071 | fi |
---|
| 3072 | |
---|
| 3073 | |
---|
| 3074 | |
---|
| 3075 | # OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN |
---|
| 3076 | (( i = 0 )) |
---|
| 3077 | while (( i < iout )) |
---|
| 3078 | do |
---|
| 3079 | (( i = i + 1 )) |
---|
| 3080 | if (( i == 1 )) |
---|
| 3081 | then |
---|
| 3082 | printf "\n\n *** saving OUTPUT-files:\n$striche" |
---|
| 3083 | fi |
---|
| 3084 | |
---|
| 3085 | # PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR |
---|
| 3086 | files_for_pes=false; filetyp=file |
---|
| 3087 | if [[ "${actionout[$i]}" = pe && -n $numprocs ]] |
---|
| 3088 | then |
---|
| 3089 | files_for_pes=true; filetyp=directory |
---|
| 3090 | actionout[$i]="" |
---|
| 3091 | elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]] |
---|
| 3092 | then |
---|
| 3093 | actionout[$i]="" |
---|
| 3094 | elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]] |
---|
| 3095 | then |
---|
| 3096 | files_for_pes=true; filetyp=directory |
---|
| 3097 | actionout[$i]="ar" |
---|
| 3098 | elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]] |
---|
| 3099 | then |
---|
| 3100 | actionout[$i]="ar" |
---|
| 3101 | elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]] |
---|
| 3102 | then |
---|
| 3103 | files_for_pes=true; filetyp=directory |
---|
| 3104 | actionout[$i]="fl" |
---|
| 3105 | elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]] |
---|
| 3106 | then |
---|
| 3107 | actionout[$i]="fl" |
---|
| 3108 | elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]] |
---|
| 3109 | then |
---|
| 3110 | files_for_pes=true; filetyp=directory |
---|
| 3111 | actionout[$i]="tr" |
---|
| 3112 | elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]] |
---|
| 3113 | then |
---|
| 3114 | actionout[$i]="tr" |
---|
| 3115 | fi |
---|
| 3116 | |
---|
| 3117 | if [[ ! -f ${localout[$i]} && $files_for_pes = false ]] |
---|
| 3118 | then |
---|
| 3119 | printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n" |
---|
| 3120 | elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]] |
---|
| 3121 | then |
---|
| 3122 | printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n" |
---|
| 3123 | else |
---|
| 3124 | |
---|
| 3125 | |
---|
| 3126 | # KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG |
---|
| 3127 | # NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI |
---|
| 3128 | # REMOTE-RECHNUNGEN |
---|
| 3129 | if [[ "${actionout[$i]}" = tr ]] |
---|
| 3130 | then |
---|
| 3131 | if [[ $localhost != $fromhost ]] |
---|
| 3132 | then |
---|
| 3133 | if [[ $files_for_pes = false ]] |
---|
| 3134 | then |
---|
| 3135 | cps="" |
---|
| 3136 | cst="" |
---|
| 3137 | else |
---|
| 3138 | cps=-c |
---|
| 3139 | cst="/" |
---|
| 3140 | fi |
---|
| 3141 | if [[ $localhost = ibmh || $localhost = ibmb || $localhost = nech ]] |
---|
| 3142 | then |
---|
| 3143 | |
---|
| 3144 | # TRANSFER IN EIGENSTAENDIGEM JOB |
---|
| 3145 | # ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS |
---|
| 3146 | [[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER |
---|
| 3147 | file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung |
---|
| 3148 | if [[ $files_for_pes = false ]] |
---|
| 3149 | then |
---|
| 3150 | ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer |
---|
| 3151 | else |
---|
| 3152 | mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer |
---|
| 3153 | ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer |
---|
| 3154 | fi |
---|
| 3155 | |
---|
| 3156 | echo "set -x" > transfer_${localout[$i]} |
---|
| 3157 | echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]} |
---|
[82] | 3158 | |
---|
| 3159 | printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to" |
---|
| 3160 | printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst" |
---|
| 3161 | printf "\n or higher cycle\n" |
---|
| 3162 | echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]} |
---|
| 3163 | |
---|
[1] | 3164 | echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]} |
---|
| 3165 | |
---|
| 3166 | if [[ $localhost = nech ]] |
---|
| 3167 | then |
---|
[82] | 3168 | subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]} |
---|
[1] | 3169 | else |
---|
| 3170 | if [[ "$LOGNAME" = b323013 ]] |
---|
| 3171 | then |
---|
[164] | 3172 | subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]} |
---|
[1] | 3173 | else |
---|
[164] | 3174 | subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]} |
---|
[1] | 3175 | fi |
---|
| 3176 | fi |
---|
| 3177 | |
---|
| 3178 | else |
---|
| 3179 | |
---|
| 3180 | # TRANSFER INNERHALB DIESES JOBS |
---|
| 3181 | transfer_failed=false |
---|
[82] | 3182 | printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to" |
---|
| 3183 | printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n" |
---|
| 3184 | batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]} |
---|
| 3185 | [[ $? != 0 ]] && transfer_failed=true |
---|
[1] | 3186 | |
---|
| 3187 | # BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF |
---|
| 3188 | # LOKALER MASCHINE ANLEGEN |
---|
| 3189 | if [[ $transfer_failed = true ]] |
---|
| 3190 | then |
---|
| 3191 | printf " +++ transfer failed. Trying to save a copy on the local host under:\n" |
---|
| 3192 | printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n" |
---|
| 3193 | |
---|
| 3194 | # ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS |
---|
| 3195 | # ANLEGEN. |
---|
| 3196 | eval local_catalog=${pathout[$i]} |
---|
| 3197 | if [[ ! -d $local_catalog ]] |
---|
| 3198 | then |
---|
| 3199 | printf " *** local directory does not exist. Trying to create:\n" |
---|
| 3200 | printf " $local_catalog \n" |
---|
| 3201 | mkdir -p $local_catalog |
---|
| 3202 | fi |
---|
| 3203 | eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung |
---|
| 3204 | transfer_problems=true |
---|
| 3205 | fi |
---|
| 3206 | fi |
---|
| 3207 | else |
---|
| 3208 | |
---|
| 3209 | # WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD |
---|
| 3210 | actionout[$i]="" |
---|
| 3211 | fi |
---|
| 3212 | fi |
---|
| 3213 | |
---|
| 3214 | |
---|
| 3215 | # APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG |
---|
| 3216 | # NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI |
---|
| 3217 | # REMOTE-RECHNUNGEN |
---|
| 3218 | if [[ "${actionout[$i]}" = tra ]] |
---|
| 3219 | then |
---|
| 3220 | if [[ $localhost != $fromhost ]] |
---|
| 3221 | then |
---|
| 3222 | if [[ $localhost = ibmh || $localhost = ibmb || $localhost = nech ]] |
---|
| 3223 | then |
---|
| 3224 | |
---|
| 3225 | # TRANSFER IN EIGENSTAENDIGEM JOB |
---|
| 3226 | # ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS |
---|
| 3227 | [[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER |
---|
| 3228 | file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung |
---|
| 3229 | ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer |
---|
| 3230 | |
---|
| 3231 | echo "set -x" > transfer_${localout[$i]} |
---|
| 3232 | echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]} |
---|
[82] | 3233 | |
---|
| 3234 | printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to" |
---|
| 3235 | printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}" |
---|
| 3236 | printf "\n or higher cycle\n" |
---|
| 3237 | echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]} |
---|
| 3238 | |
---|
[1] | 3239 | echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]} |
---|
| 3240 | |
---|
| 3241 | if [[ $localhost = nech ]] |
---|
| 3242 | then |
---|
[82] | 3243 | subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]} |
---|
[1] | 3244 | else |
---|
| 3245 | if [[ $LOGNAME = b323013 ]] |
---|
| 3246 | then |
---|
[164] | 3247 | subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]} |
---|
[1] | 3248 | else |
---|
[164] | 3249 | subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]} |
---|
[1] | 3250 | fi |
---|
| 3251 | fi |
---|
| 3252 | |
---|
| 3253 | else |
---|
| 3254 | |
---|
| 3255 | # TRANSFER INNERHALB DIESES JOBS |
---|
| 3256 | transfer_failed=false |
---|
[82] | 3257 | printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to" |
---|
| 3258 | printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n" |
---|
| 3259 | batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]} |
---|
| 3260 | [[ $? != 0 ]] && transfer_failed=true |
---|
[1] | 3261 | |
---|
| 3262 | # BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF |
---|
| 3263 | # LOKALER MASCHINE ANLEGEN |
---|
| 3264 | if [[ $transfer_failed = true ]] |
---|
| 3265 | then |
---|
| 3266 | printf " +++ transfer failed. Trying to save a copy on the local host under:\n" |
---|
| 3267 | printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n" |
---|
| 3268 | |
---|
| 3269 | # ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS |
---|
| 3270 | # ANLEGEN |
---|
| 3271 | eval local_catalog=${pathout[$i]} |
---|
| 3272 | if [[ ! -d $local_catalog ]] |
---|
| 3273 | then |
---|
| 3274 | printf " *** local directory does not exist. Trying to create:\n" |
---|
| 3275 | printf " $local_catalog \n" |
---|
| 3276 | mkdir -p $local_catalog |
---|
| 3277 | fi |
---|
| 3278 | |
---|
| 3279 | eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung |
---|
| 3280 | transfer_problems=true |
---|
| 3281 | fi |
---|
| 3282 | fi |
---|
| 3283 | else |
---|
| 3284 | |
---|
| 3285 | # WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF |
---|
| 3286 | # LOKALER MASCHINE DURCHGEFUEHRT WIRD |
---|
| 3287 | actionout[$i]=a |
---|
| 3288 | fi |
---|
| 3289 | fi |
---|
| 3290 | |
---|
| 3291 | |
---|
| 3292 | # OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER |
---|
| 3293 | # LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD |
---|
| 3294 | # VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN |
---|
| 3295 | # SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN |
---|
| 3296 | if [[ "${actionout[$i]}" = fl ]] |
---|
| 3297 | then |
---|
| 3298 | [[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog |
---|
| 3299 | chmod g+rx $tmp_data_catalog |
---|
| 3300 | if [[ $files_for_pes = false ]] |
---|
| 3301 | then |
---|
| 3302 | printf "\n >>> OUTPUT: ${localout[$i]} to" |
---|
| 3303 | printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n" |
---|
| 3304 | ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]} |
---|
| 3305 | else |
---|
| 3306 | printf "\n >>> OUTPUT: ${localout[$i]}/.... to" |
---|
| 3307 | printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n" |
---|
| 3308 | mkdir $tmp_data_catalog/${frelout[$i]} |
---|
[149] | 3309 | cd ${localout[$i]} |
---|
| 3310 | for file in $(ls *) |
---|
| 3311 | do |
---|
| 3312 | ln -f $file $tmp_data_catalog/${frelout[$i]} |
---|
| 3313 | done |
---|
| 3314 | cd $TEMPDIR |
---|
[1] | 3315 | fi |
---|
| 3316 | |
---|
| 3317 | |
---|
| 3318 | # ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT |
---|
| 3319 | if [[ $store_on_archive_system = true ]] |
---|
| 3320 | then |
---|
| 3321 | |
---|
| 3322 | if [[ $archive_system = asterix ]] |
---|
| 3323 | then |
---|
| 3324 | echo "cd $tmp_data_catalog" >> archive_${frelout[$i]} |
---|
| 3325 | if [[ $files_for_pes = false ]] |
---|
| 3326 | then |
---|
| 3327 | echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]} |
---|
| 3328 | else |
---|
| 3329 | echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]} |
---|
| 3330 | fi |
---|
| 3331 | echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]} |
---|
| 3332 | echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]} |
---|
| 3333 | echo "then" >> archive_${frelout[$i]} |
---|
| 3334 | echo " do_stageout=false" >> archive_${frelout[$i]} |
---|
| 3335 | echo "else" >> archive_${frelout[$i]} |
---|
| 3336 | echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]} |
---|
| 3337 | echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]} |
---|
| 3338 | echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]} |
---|
| 3339 | echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]} |
---|
| 3340 | if [[ $files_for_pes = false ]] |
---|
| 3341 | then |
---|
| 3342 | echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]} |
---|
| 3343 | else |
---|
| 3344 | echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3345 | fi |
---|
| 3346 | echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]} |
---|
| 3347 | echo "fi" >> archive_${frelout[$i]} |
---|
| 3348 | echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]} |
---|
| 3349 | elif [[ $archive_system = DMF ]] |
---|
| 3350 | then |
---|
| 3351 | echo "cd $tmp_data_catalog" >> archive_${frelout[$i]} |
---|
| 3352 | if [[ $files_for_pes = false ]] |
---|
| 3353 | then |
---|
| 3354 | printf "\n +++ archiving of single files impossible with $archive_system !\n" |
---|
| 3355 | locat=DMF |
---|
| 3356 | exit |
---|
| 3357 | else |
---|
| 3358 | # FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH |
---|
| 3359 | # EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.) |
---|
| 3360 | echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3361 | echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]} |
---|
| 3362 | fi |
---|
| 3363 | elif [[ $archive_system = tivoli ]] |
---|
| 3364 | then |
---|
| 3365 | echo "cd $tmp_data_catalog" >> archive_${frelout[$i]} |
---|
| 3366 | if [[ $files_for_pes = false ]] |
---|
| 3367 | then |
---|
| 3368 | # EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN |
---|
| 3369 | echo "set -x" >> archive_${frelout[$i]} |
---|
| 3370 | echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3371 | echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3372 | else |
---|
| 3373 | |
---|
| 3374 | echo "set -x" >> archive_${frelout[$i]} |
---|
| 3375 | echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]} |
---|
| 3376 | echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3377 | cd $tmp_data_catalog |
---|
| 3378 | all_files=`ls -1 ${frelout[$i]}/*` |
---|
| 3379 | cd - > /dev/null |
---|
| 3380 | (( inode = 0 )) |
---|
| 3381 | (( tp1 = tasks_per_node + 1 )) |
---|
| 3382 | while (( inode < nodes )) |
---|
| 3383 | do |
---|
| 3384 | # echo "*** all_files = \"$all_files\" " |
---|
| 3385 | files=`echo $all_files | cut -d" " -f1-$tasks_per_node` |
---|
| 3386 | all_files=`echo $all_files | cut -d" " -f$tp1-` |
---|
| 3387 | # echo "*** tasks_per_node = \"$tasks_per_node\" " |
---|
| 3388 | # echo "*** files = \"$files\" " |
---|
| 3389 | # echo "*** all_files = \"$all_files\" " |
---|
| 3390 | echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]} |
---|
| 3391 | echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]} |
---|
| 3392 | echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]} |
---|
| 3393 | (( inode = inode + 1 )) |
---|
| 3394 | done |
---|
| 3395 | # echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]} |
---|
| 3396 | # echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3397 | fi |
---|
| 3398 | elif [[ $archive_system = ut ]] |
---|
| 3399 | then |
---|
| 3400 | echo "cd $tmp_data_catalog" >> archive_${frelout[$i]} |
---|
| 3401 | if [[ $files_for_pes = false ]] |
---|
| 3402 | then |
---|
| 3403 | # EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN |
---|
| 3404 | echo "set -x" >> archive_${frelout[$i]} |
---|
| 3405 | echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3406 | echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3407 | else |
---|
| 3408 | |
---|
| 3409 | echo "set -x" >> archive_${frelout[$i]} |
---|
| 3410 | echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]} |
---|
| 3411 | echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3412 | cd $tmp_data_catalog |
---|
| 3413 | all_files=`ls -1 ${frelout[$i]}/*` |
---|
| 3414 | cd - > /dev/null |
---|
| 3415 | (( inode = 0 )) |
---|
| 3416 | (( tp1 = tasks_per_node + 1 )) |
---|
| 3417 | while (( inode < nodes )) |
---|
| 3418 | do |
---|
| 3419 | files=`echo $all_files | cut -d" " -f1-$tasks_per_node` |
---|
| 3420 | all_files=`echo $all_files | cut -d" " -f$tp1-` |
---|
| 3421 | echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]} |
---|
| 3422 | (( inode = inode + 1 )) |
---|
| 3423 | done |
---|
| 3424 | fi |
---|
| 3425 | elif [[ $archive_system = none ]] |
---|
| 3426 | then |
---|
| 3427 | printf " +++ archiving on $localhost not available!\n" |
---|
| 3428 | fi |
---|
| 3429 | |
---|
| 3430 | if [[ $archive_system != none ]] |
---|
| 3431 | then |
---|
| 3432 | if [[ $localhost = ibmh || $localhost = ibmb ]] |
---|
| 3433 | then |
---|
[164] | 3434 | # subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]} |
---|
| 3435 | subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]} |
---|
[1] | 3436 | elif [[ $localhost = nech ]] |
---|
| 3437 | then |
---|
[82] | 3438 | subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]} |
---|
[1] | 3439 | fi |
---|
| 3440 | printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n" |
---|
| 3441 | fi |
---|
| 3442 | else |
---|
| 3443 | printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n" |
---|
| 3444 | fi |
---|
| 3445 | |
---|
| 3446 | |
---|
| 3447 | # LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST, |
---|
| 3448 | # WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET |
---|
| 3449 | if [[ $files_for_pes = false ]] |
---|
| 3450 | then |
---|
| 3451 | cat /dev/null > ${pathout[$i]} |
---|
| 3452 | else |
---|
| 3453 | mkdir -p ${pathout[$i]} |
---|
| 3454 | fi |
---|
| 3455 | |
---|
| 3456 | fi |
---|
| 3457 | |
---|
| 3458 | |
---|
| 3459 | # KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM |
---|
| 3460 | # AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST, |
---|
| 3461 | # WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET |
---|
| 3462 | # FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT, |
---|
| 3463 | # WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS- |
---|
| 3464 | # GEMAESSEN ARCHIVIERUNGEN GESETZT |
---|
| 3465 | if [[ "${actionout[$i]}" = ar ]] |
---|
| 3466 | then |
---|
| 3467 | if [[ $files_for_pes = false ]] |
---|
| 3468 | then |
---|
| 3469 | printf "\n >>> OUTPUT: ${localout[$i]} to" |
---|
| 3470 | printf "\n ${pathout[$i]}" |
---|
| 3471 | printf "\n File will be copied to archive-system ($archive_system) !\n" |
---|
| 3472 | else |
---|
| 3473 | printf "\n >>> OUTPUT: ${localout[$i]}/_.... to" |
---|
| 3474 | printf "\n ${pathout[$i]}" |
---|
| 3475 | printf "\n Directory will be copied to archive-system ($archive_system) !\n" |
---|
| 3476 | fi |
---|
| 3477 | mv ${localout[$i]} ${frelout[$i]} |
---|
| 3478 | |
---|
| 3479 | file_saved=false |
---|
| 3480 | |
---|
| 3481 | if [[ $archive_system = asterix ]] |
---|
| 3482 | then |
---|
| 3483 | do_stageout=true |
---|
| 3484 | (( stageout_anz = 0 )) |
---|
| 3485 | while [[ $do_stageout = true ]] |
---|
| 3486 | do |
---|
| 3487 | if [[ $files_for_pes = false ]] |
---|
| 3488 | then |
---|
| 3489 | stageout ${frelout[$i]} > STAGE_OUTPUT |
---|
| 3490 | else |
---|
| 3491 | stageout -t ${frelout[$i]} > STAGE_OUTPUT |
---|
| 3492 | fi |
---|
| 3493 | cat STAGE_OUTPUT |
---|
| 3494 | if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]] |
---|
| 3495 | then |
---|
| 3496 | file_saved=true |
---|
| 3497 | do_stageout=false |
---|
| 3498 | else |
---|
| 3499 | if [[ $files_for_pes = false ]] |
---|
| 3500 | then |
---|
| 3501 | printf "\n +++ file ${frelout[$i]} could not be saved on archive-system" |
---|
| 3502 | else |
---|
| 3503 | printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system" |
---|
| 3504 | fi |
---|
| 3505 | (( stageout_anz = stageout_anz + 1 )) |
---|
| 3506 | if (( stageout_anz == 10 )) |
---|
| 3507 | then |
---|
| 3508 | printf "\n +++ stoped after 10 unsuccessful tries!" |
---|
| 3509 | archive_save=false |
---|
| 3510 | do_stageout=false |
---|
| 3511 | else |
---|
| 3512 | printf "\n *** new try to store on archive after 15 min:" |
---|
| 3513 | sleep 900 |
---|
| 3514 | fi |
---|
| 3515 | fi |
---|
| 3516 | done |
---|
| 3517 | elif [[ $archive_system = DMF ]] |
---|
| 3518 | then |
---|
| 3519 | if [[ $files_for_pes = false ]] |
---|
| 3520 | then |
---|
| 3521 | printf "\n +++ archiving of single files impossible on $archive_system!\n" |
---|
| 3522 | locat=DMF |
---|
| 3523 | exit |
---|
| 3524 | else |
---|
| 3525 | rm -rf $ARCHIVE/${frelout[$i]} |
---|
| 3526 | cp -r ${frelout[$i]} $ARCHIVE |
---|
| 3527 | fi |
---|
| 3528 | file_saved=true |
---|
| 3529 | elif [[ $archive_system = tivoli ]] |
---|
| 3530 | then |
---|
| 3531 | # ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH |
---|
| 3532 | # DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS |
---|
| 3533 | # GELEGT WERDEN |
---|
| 3534 | [[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog |
---|
| 3535 | chmod g+rx $tmp_data_catalog |
---|
| 3536 | if [[ $files_for_pes = false ]] |
---|
| 3537 | then |
---|
| 3538 | ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]} |
---|
| 3539 | else |
---|
| 3540 | mkdir $tmp_data_catalog/${frelout[$i]} |
---|
| 3541 | ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]} |
---|
| 3542 | fi |
---|
| 3543 | |
---|
| 3544 | # BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER |
---|
| 3545 | # AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN |
---|
| 3546 | echo "cd $tmp_data_catalog" > archive_${frelout[$i]} |
---|
| 3547 | if [[ $files_for_pes = false ]] |
---|
| 3548 | then |
---|
| 3549 | # EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN |
---|
| 3550 | echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3551 | echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3552 | echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3553 | else |
---|
| 3554 | echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]} |
---|
| 3555 | echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3556 | echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3557 | fi |
---|
| 3558 | |
---|
[164] | 3559 | subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]} |
---|
[1] | 3560 | printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n" |
---|
| 3561 | file_saved=true |
---|
| 3562 | |
---|
| 3563 | elif [[ $archive_system = ut ]] |
---|
| 3564 | then |
---|
| 3565 | # ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH |
---|
| 3566 | # DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS |
---|
| 3567 | # GELEGT WERDEN |
---|
| 3568 | [[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog |
---|
| 3569 | chmod g+rx $tmp_data_catalog |
---|
| 3570 | if [[ $files_for_pes = false ]] |
---|
| 3571 | then |
---|
| 3572 | ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]} |
---|
| 3573 | else |
---|
| 3574 | mkdir $tmp_data_catalog/${frelout[$i]} |
---|
| 3575 | ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]} |
---|
| 3576 | fi |
---|
| 3577 | |
---|
| 3578 | # BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER |
---|
| 3579 | # AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN |
---|
| 3580 | echo "cd $tmp_data_catalog" > archive_${frelout[$i]} |
---|
| 3581 | if [[ $files_for_pes = false ]] |
---|
| 3582 | then |
---|
| 3583 | # EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN |
---|
| 3584 | echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3585 | echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3586 | echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3587 | else |
---|
| 3588 | echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]} |
---|
| 3589 | echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3590 | echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]} |
---|
| 3591 | fi |
---|
| 3592 | |
---|
[82] | 3593 | subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]} |
---|
[1] | 3594 | printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n" |
---|
| 3595 | file_saved=true |
---|
| 3596 | |
---|
| 3597 | else |
---|
| 3598 | printf "\n +++ archive_system=\"$archive_system\" archiving impossible!" |
---|
| 3599 | archive_save=false |
---|
| 3600 | fi |
---|
| 3601 | if [[ $file_saved = true ]] |
---|
| 3602 | then |
---|
| 3603 | if [[ $files_for_pes = false ]] |
---|
| 3604 | then |
---|
| 3605 | cat /dev/null > ${pathout[$i]} |
---|
| 3606 | else |
---|
| 3607 | mkdir -p ${pathout[$i]} |
---|
| 3608 | fi |
---|
| 3609 | fi |
---|
| 3610 | fi |
---|
| 3611 | |
---|
| 3612 | # APPEND AUF LOKALER MASCHINE |
---|
| 3613 | if [[ "${actionout[$i]}" = "a" ]] |
---|
| 3614 | then |
---|
| 3615 | printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n" |
---|
| 3616 | cat ${localout[$i]} >> ${pathout[$i]} |
---|
| 3617 | fi |
---|
| 3618 | |
---|
| 3619 | # KOPIEREN AUF LOKALER MASCHINE |
---|
| 3620 | # ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH |
---|
| 3621 | if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]] |
---|
| 3622 | then |
---|
| 3623 | |
---|
| 3624 | # KOPIEREN AUF EINPROZESSORMASCHINE |
---|
[5] | 3625 | if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]] |
---|
[1] | 3626 | then |
---|
| 3627 | printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n" |
---|
[149] | 3628 | if [[ $link_local_output = true ]] |
---|
| 3629 | then |
---|
| 3630 | printf " using ln -f\n" |
---|
| 3631 | ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]} |
---|
| 3632 | fi |
---|
| 3633 | # If "ln -f" fails of if "$link_local_output = false" do a normal "cp" |
---|
| 3634 | if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]] |
---|
| 3635 | then |
---|
| 3636 | if [[ $link_local_output = true ]] |
---|
| 3637 | then |
---|
| 3638 | printf " ln failed, using cp...\n" |
---|
| 3639 | fi |
---|
| 3640 | cp ${localout[$i]} ${pathout[$i]}.${extout[$i]} |
---|
| 3641 | fi |
---|
[1] | 3642 | else |
---|
| 3643 | printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n" |
---|
[149] | 3644 | if [[ $link_local_output = true ]] |
---|
| 3645 | then |
---|
| 3646 | printf " using ln -f\n" |
---|
| 3647 | ln -f ${localout[$i]} ${pathout[$i]} |
---|
| 3648 | fi |
---|
| 3649 | # If "ln -f" fails of if "$link_local_output = false" do a normal "cp" |
---|
| 3650 | if [[ ! -f "${pathout[$i]}" ]] |
---|
| 3651 | then |
---|
| 3652 | if [[ $link_local_output = true ]] |
---|
| 3653 | then |
---|
| 3654 | printf " ln failed, using cp...\n" |
---|
| 3655 | fi |
---|
| 3656 | cp ${localout[$i]} ${pathout[$i]} |
---|
| 3657 | fi |
---|
[1] | 3658 | fi |
---|
| 3659 | |
---|
| 3660 | elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]] |
---|
| 3661 | then |
---|
| 3662 | |
---|
| 3663 | # DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN |
---|
| 3664 | # DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER |
---|
| 3665 | # WIRD DANN KOPIERT |
---|
| 3666 | # PER MOVE UMBENANNT WERDEN |
---|
| 3667 | printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n" |
---|
[149] | 3668 | if [[ $link_local_output = true ]] |
---|
| 3669 | then |
---|
| 3670 | printf " using ln -f\n" |
---|
| 3671 | mkdir ${pathout[$i]} |
---|
| 3672 | cd ${localout[$i]} |
---|
| 3673 | for file in $(ls *) |
---|
| 3674 | do |
---|
| 3675 | ln -f $file ${pathout[$i]} |
---|
| 3676 | done |
---|
| 3677 | cd $TEMPDIR |
---|
| 3678 | fi |
---|
| 3679 | # If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r" |
---|
| 3680 | if [[ ! -f "${pathout[$i]}/_0000" ]] |
---|
| 3681 | then |
---|
| 3682 | if [[ $link_local_output = true ]] |
---|
| 3683 | then |
---|
| 3684 | printf " ln failed for .../_0000, using cp...\n" |
---|
| 3685 | fi |
---|
| 3686 | cp -r ${localout[$i]} ${pathout[$i]} |
---|
| 3687 | fi |
---|
[1] | 3688 | |
---|
| 3689 | fi |
---|
| 3690 | fi |
---|
| 3691 | done |
---|
| 3692 | if (( i != 0 )) |
---|
| 3693 | then |
---|
| 3694 | if [[ $transfer_problems = true ]] |
---|
| 3695 | then |
---|
| 3696 | printf "\n$striche\n *** OUTPUT-files saved" |
---|
| 3697 | printf "\n +++ WARNING: some data transfers failed! \n" |
---|
| 3698 | else |
---|
| 3699 | printf "\n$striche\n *** all OUTPUT-files saved \n" |
---|
| 3700 | fi |
---|
| 3701 | fi |
---|
| 3702 | |
---|
| 3703 | |
---|
| 3704 | # EVENTUELL FOLGEJOB STARTEN |
---|
| 3705 | # DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN |
---|
| 3706 | if [[ -f CONTINUE_RUN ]] |
---|
| 3707 | then |
---|
| 3708 | |
---|
| 3709 | if [[ $archive_save = true ]] |
---|
| 3710 | then |
---|
| 3711 | |
---|
| 3712 | # ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER |
---|
| 3713 | # STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER |
---|
| 3714 | # BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE |
---|
| 3715 | # DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR- |
---|
| 3716 | # HANDEN |
---|
| 3717 | [[ $(echo $mc | grep -c "\-C") = 0 ]] && mc="$mc -C" |
---|
| 3718 | [[ $(echo $mc | grep -c "\-v") = 0 ]] && mc="$mc -v" |
---|
| 3719 | [[ $(echo $mc | grep -c "\-b") = 0 ]] && mc="$mc -b" |
---|
| 3720 | if [[ $(echo $mc | grep -c "#") != 0 ]] |
---|
| 3721 | then |
---|
| 3722 | mc=`echo $mc | sed 's/#/f/g'` |
---|
| 3723 | fi |
---|
| 3724 | |
---|
| 3725 | |
---|
| 3726 | # JOB STARTEN |
---|
| 3727 | printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n" |
---|
| 3728 | echo " $mc" |
---|
| 3729 | printf "\n$striche\n" |
---|
| 3730 | if [[ $localhost != $fromhost ]] |
---|
| 3731 | then |
---|
| 3732 | |
---|
[204] | 3733 | if [[ $localhost = lcsgih || $localhost = lcsgib || $localhost = nech || $localhost = ibmb || $localhost = ibmh || $localhost = ibms || $localhost = lctit ]] |
---|
[1] | 3734 | then |
---|
| 3735 | echo "*** ssh will be used to initiate restart-runs!" |
---|
| 3736 | echo " return_addres=\"$return_addres\" " |
---|
| 3737 | echo " return_username=\"$return_username\" " |
---|
| 3738 | if [[ $return_addres = 172.20.25.41 ]] |
---|
| 3739 | then |
---|
| 3740 | # WORKAROUND AUF SCIROCCO AM TIT |
---|
[33] | 3741 | print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " | ssh $return_addres -l $return_username |
---|
[1] | 3742 | else |
---|
[33] | 3743 | ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " |
---|
[1] | 3744 | fi |
---|
| 3745 | else |
---|
| 3746 | printf "\n +++ no restart mechanism available for host \"$localhost\" " |
---|
| 3747 | locat=restart; exit |
---|
| 3748 | fi |
---|
| 3749 | |
---|
| 3750 | # WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR |
---|
| 3751 | # DER AKTUELLE JOB ENDET |
---|
| 3752 | sleep 30 |
---|
| 3753 | |
---|
| 3754 | else |
---|
| 3755 | |
---|
| 3756 | # BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE- |
---|
[108] | 3757 | # RUFEN WERDEN, AUSSER AUF lcfimm |
---|
[1] | 3758 | cd $LOCAL_PWD |
---|
[108] | 3759 | if [[ $localhost = lcfimm ]] |
---|
| 3760 | then |
---|
| 3761 | ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " |
---|
| 3762 | else |
---|
| 3763 | eval $mc # ' MUESSEN AUSGEWERTET WERDEN |
---|
| 3764 | fi |
---|
[1] | 3765 | cd - > /dev/null |
---|
| 3766 | fi |
---|
| 3767 | printf "\n$striche\n *** restart-run initiated \n" |
---|
| 3768 | |
---|
| 3769 | |
---|
| 3770 | # EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS |
---|
| 3771 | # GEHOLT WORDEN SIND, LOESCHEN |
---|
| 3772 | (( i = 0 )) |
---|
| 3773 | while (( i < iin )) |
---|
| 3774 | do |
---|
| 3775 | (( i = i + 1 )) |
---|
| 3776 | if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]] |
---|
| 3777 | then |
---|
| 3778 | rm -r $tmp_data_catalog/${frelin[$i]} |
---|
| 3779 | fi |
---|
| 3780 | done |
---|
| 3781 | |
---|
| 3782 | else |
---|
| 3783 | |
---|
| 3784 | printf "\n +++ no restart-run possible, since errors occured" |
---|
| 3785 | printf "\n during the archive process" |
---|
| 3786 | fi |
---|
| 3787 | |
---|
| 3788 | fi |
---|
| 3789 | |
---|
| 3790 | |
---|
| 3791 | |
---|
| 3792 | # EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF |
---|
| 3793 | if [[ "$email_notification" != "" ]] |
---|
| 3794 | then |
---|
| 3795 | |
---|
| 3796 | if [[ $localhost != $fromhost ]] |
---|
| 3797 | then |
---|
| 3798 | if [[ -f CONTINUE_RUN ]] |
---|
| 3799 | then |
---|
| 3800 | echo "PALM restart run necessary" > email_text |
---|
| 3801 | echo "description header of actual run:" >> email_text |
---|
| 3802 | cat CONTINUE_RUN >> email_text |
---|
| 3803 | echo "mrun-command to restart:" >> email_text |
---|
| 3804 | echo "$mc" >> email_text |
---|
| 3805 | else |
---|
| 3806 | echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text |
---|
| 3807 | fi |
---|
| 3808 | mail $email_notification < email_text |
---|
| 3809 | printf "\n *** email notification sent to \"$email_notification\" " |
---|
| 3810 | fi |
---|
| 3811 | fi |
---|
| 3812 | |
---|
| 3813 | |
---|
| 3814 | |
---|
| 3815 | # ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN |
---|
| 3816 | cd $HOME |
---|
| 3817 | [[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR |
---|
| 3818 | |
---|
| 3819 | else |
---|
| 3820 | |
---|
| 3821 | |
---|
| 3822 | # FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE- |
---|
| 3823 | # CHENDE AKTIONEN DURCHGEFUEHRT |
---|
| 3824 | |
---|
| 3825 | # MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN |
---|
[82] | 3826 | mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username" |
---|
[1] | 3827 | [[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\"" |
---|
[79] | 3828 | [[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\"" |
---|
[123] | 3829 | [[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number" |
---|
[1] | 3830 | [[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\"" |
---|
| 3831 | [[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\"" |
---|
| 3832 | [[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I" |
---|
| 3833 | [[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k" |
---|
| 3834 | [[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\"" |
---|
| 3835 | # [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\"" |
---|
| 3836 | [[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\"" |
---|
| 3837 | [[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S" |
---|
| 3838 | [[ $do_trace = true ]] && mrun_com=${mrun_com}" -x" |
---|
| 3839 | [[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs" |
---|
| 3840 | if [[ $use_openmp = true ]] |
---|
| 3841 | then |
---|
| 3842 | mrun_com=${mrun_com}" -O" |
---|
| 3843 | [[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task" |
---|
| 3844 | else |
---|
| 3845 | [[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node" |
---|
| 3846 | fi |
---|
| 3847 | [[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A" |
---|
| 3848 | [[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\"" |
---|
| 3849 | [[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password" |
---|
| 3850 | [[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B" |
---|
[127] | 3851 | [[ $node_usage != default && "$(echo $node_usage | cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage" |
---|
[206] | 3852 | [[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\"" |
---|
[1] | 3853 | if [[ $do_remote = true ]] |
---|
| 3854 | then |
---|
| 3855 | printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n" |
---|
| 3856 | fi |
---|
| 3857 | |
---|
| 3858 | |
---|
| 3859 | # ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile |
---|
| 3860 | jobfile=jobfile.$RANDOM |
---|
| 3861 | |
---|
| 3862 | |
---|
| 3863 | # TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN |
---|
| 3864 | echo "mkdir $TEMPDIR" >> $jobfile |
---|
| 3865 | echo "cd $TEMPDIR" >> $jobfile |
---|
| 3866 | |
---|
| 3867 | |
---|
| 3868 | # EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN |
---|
| 3869 | if [[ $do_trace = true ]] |
---|
| 3870 | then |
---|
| 3871 | echo "set -x" >> $jobfile |
---|
| 3872 | else |
---|
| 3873 | echo "set +vx" >> $jobfile |
---|
| 3874 | fi |
---|
| 3875 | |
---|
| 3876 | |
---|
[191] | 3877 | # BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS- |
---|
| 3878 | # DATEI FUER DEN JOB |
---|
| 3879 | if [[ $( echo $host | cut -c1-5 ) = lcsgi ]] |
---|
[1] | 3880 | then |
---|
| 3881 | |
---|
[191] | 3882 | # KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS |
---|
| 3883 | # KOPIEREN |
---|
| 3884 | if [[ $restart_run != true ]] |
---|
| 3885 | then |
---|
| 3886 | cp $config_file $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 3887 | cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname |
---|
| 3888 | fi |
---|
[1] | 3889 | |
---|
[191] | 3890 | # SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN |
---|
[193] | 3891 | echo "set -x" >> $jobfile |
---|
| 3892 | echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile |
---|
| 3893 | echo "export SOURCES_COMPLETE=true" >> $jobfile |
---|
[1] | 3894 | |
---|
[193] | 3895 | # QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE |
---|
| 3896 | # ARBEITSVERZEICHNIS VERSCHIEBEN |
---|
| 3897 | echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile |
---|
| 3898 | echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile |
---|
| 3899 | echo "execute_mrun=true" >> $jobfile |
---|
| 3900 | echo " " >> $jobfile |
---|
| 3901 | |
---|
[191] | 3902 | else |
---|
| 3903 | |
---|
| 3904 | # ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL) |
---|
| 3905 | # SOWIE GEGEBENENFALLS DES MAKEFILES |
---|
| 3906 | if [[ $do_compile = true ]] |
---|
| 3907 | then |
---|
| 3908 | |
---|
| 3909 | source_catalog=SOURCES_FOR_RUN_$fname |
---|
| 3910 | |
---|
| 3911 | # UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN |
---|
| 3912 | # MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE |
---|
| 3913 | # MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI) |
---|
| 3914 | echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile |
---|
| 3915 | echo "export SOURCES_COMPLETE=true" >> $jobfile |
---|
| 3916 | echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile |
---|
| 3917 | |
---|
| 3918 | for filename in $source_list |
---|
| 3919 | do |
---|
| 3920 | # ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN |
---|
| 3921 | echo "cat > $filename << \"%END%\"" >> $jobfile |
---|
| 3922 | cat $source_catalog/$filename >> $jobfile |
---|
| 3923 | echo " " >> $jobfile |
---|
| 3924 | echo "%END%" >> $jobfile |
---|
| 3925 | echo " " >> $jobfile |
---|
| 3926 | done |
---|
| 3927 | |
---|
[1] | 3928 | # ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN |
---|
[191] | 3929 | echo "cat > Makefile << \"%END%\"" >> $jobfile |
---|
| 3930 | cat $source_catalog/Makefile >> $jobfile |
---|
[1] | 3931 | echo " " >> $jobfile |
---|
| 3932 | echo "%END%" >> $jobfile |
---|
| 3933 | echo " " >> $jobfile |
---|
| 3934 | |
---|
[191] | 3935 | echo "cd - > /dev/null" >> $jobfile |
---|
[1] | 3936 | |
---|
[191] | 3937 | fi |
---|
[1] | 3938 | |
---|
| 3939 | |
---|
[191] | 3940 | # ABSPEICHERN DER KONFIGURATIONSDATEI |
---|
| 3941 | # ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN |
---|
| 3942 | echo "cat > $config_file << \"%END%\"" >> $jobfile |
---|
| 3943 | cat $config_file >> $jobfile |
---|
| 3944 | echo "%END%" >> $jobfile |
---|
| 3945 | echo " " >> $jobfile |
---|
[1] | 3946 | |
---|
| 3947 | |
---|
[191] | 3948 | # ABSPEICHERN DER AKTUELLEN MRUN-VERSION |
---|
| 3949 | # ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN |
---|
| 3950 | echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile |
---|
| 3951 | cat ${PALM_BIN}/$mrun_script_name >> $jobfile |
---|
| 3952 | echo "%END%" >> $jobfile |
---|
| 3953 | if [[ $host = lctit ]] |
---|
| 3954 | then |
---|
| 3955 | echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile |
---|
| 3956 | echo "mv mrun_new $mrun_script_name" >> $jobfile |
---|
| 3957 | fi |
---|
| 3958 | echo "chmod u+x $mrun_script_name" >> $jobfile |
---|
| 3959 | echo "execute_mrun=true" >> $jobfile |
---|
| 3960 | echo " " >> $jobfile |
---|
[1] | 3961 | |
---|
| 3962 | fi |
---|
| 3963 | |
---|
[191] | 3964 | |
---|
[1] | 3965 | # EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT |
---|
| 3966 | # MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN |
---|
| 3967 | # FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE |
---|
| 3968 | # UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN |
---|
| 3969 | if [[ $do_remote = true ]] |
---|
| 3970 | then |
---|
| 3971 | (( i = 0 )) |
---|
| 3972 | while (( i < iin )) |
---|
| 3973 | do |
---|
| 3974 | (( i = i + 1 )) |
---|
| 3975 | echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile |
---|
| 3976 | if [[ "${transin[$i]}" = job ]] |
---|
| 3977 | then |
---|
| 3978 | echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile |
---|
| 3979 | eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile |
---|
| 3980 | echo " " >> $jobfile |
---|
| 3981 | echo "%END%" >> $jobfile |
---|
| 3982 | else |
---|
[82] | 3983 | echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile |
---|
[1] | 3984 | fi |
---|
| 3985 | |
---|
| 3986 | # UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE |
---|
| 3987 | echo "if [[ \$? = 1 ]]" >> $jobfile |
---|
| 3988 | echo "then" >> $jobfile |
---|
| 3989 | echo " echo \" \" " >> $jobfile |
---|
| 3990 | echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile |
---|
| 3991 | echo " echo \" please check, if directory exists on $host!\" " >> $jobfile |
---|
| 3992 | echo " echo \"+++ MRUN will not be continued\" " >> $jobfile |
---|
| 3993 | echo " execute_mrun=false" >> $jobfile |
---|
| 3994 | echo "fi" >> $jobfile |
---|
| 3995 | done |
---|
| 3996 | fi |
---|
| 3997 | |
---|
| 3998 | # ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE |
---|
| 3999 | # FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN |
---|
| 4000 | echo "LOCAL_PWD=$working_directory" >> $jobfile |
---|
| 4001 | echo "export LOCAL_PWD" >> $jobfile |
---|
| 4002 | |
---|
| 4003 | # EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN |
---|
[22] | 4004 | echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile |
---|
[1] | 4005 | echo "export LOCAL_MRUN_PATH" >> $jobfile |
---|
| 4006 | |
---|
[66] | 4007 | # WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN |
---|
[69] | 4008 | if [[ $localhost_realname = "gate" || $localhost = lctit ]] |
---|
[66] | 4009 | then |
---|
| 4010 | echo "export PALM_BIN=$PALM_BIN" >> $jobfile |
---|
| 4011 | fi |
---|
[1] | 4012 | |
---|
| 4013 | # MRUN AUF ZIELRECHNER AUFRUFEN |
---|
| 4014 | echo "set -x" >> $jobfile |
---|
| 4015 | echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile |
---|
| 4016 | |
---|
| 4017 | echo 'ls -al; echo `pwd`' >> $jobfile |
---|
| 4018 | echo "cd \$HOME" >> $jobfile |
---|
| 4019 | echo "rm -rf $TEMPDIR" >> $jobfile |
---|
| 4020 | |
---|
| 4021 | |
---|
| 4022 | |
---|
| 4023 | |
---|
| 4024 | # JOB PER SUBJOB STARTEN |
---|
| 4025 | if [[ $silent = false ]] |
---|
| 4026 | then |
---|
| 4027 | printf "\n " |
---|
| 4028 | else |
---|
| 4029 | printf "\n\n" |
---|
| 4030 | fi |
---|
| 4031 | |
---|
[164] | 4032 | subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog $jobfile |
---|
[1] | 4033 | rm -rf $jobfile |
---|
| 4034 | |
---|
| 4035 | |
---|
| 4036 | fi # ENDE REMOTE-TEIL |
---|
| 4037 | |
---|
| 4038 | |
---|
| 4039 | |
---|
| 4040 | # ENDE DER PROZEDUR |
---|