| 1 | #$Id: .palm.config.aurora 4814 2020-12-09 13:08:08Z forkel $ |
|---|
| 2 | #column 1 column 2 |
|---|
| 3 | #name of variable value of variable (~ must not be used) |
|---|
| 4 | #---------------------------------------------------------------------------- |
|---|
| 5 | %base_directory $HOME/palm/current_version |
|---|
| 6 | %base_data ~/palm/current_version/JOBS |
|---|
| 7 | %source_path $HOME/palm/current_version/trunk/SOURCE |
|---|
| 8 | %user_source_path $base_data/$run_identifier/USER_CODE |
|---|
| 9 | %fast_io_catalog /scratch/<replace by LUIS username> |
|---|
| 10 | %restart_data_path /scratch/<replace by LUIS username> |
|---|
| 11 | %output_data_path $base_data |
|---|
| 12 | %local_jobcatalog $base_data/$run_identifier/LOG_FILES |
|---|
| 13 | |
|---|
| 14 | %local_ip 130.75.7.130 |
|---|
| 15 | %local_username <replace by LUIS username> |
|---|
| 16 | %defaultqueue all |
|---|
| 17 | %submit_command /usr/bin/qsub |
|---|
| 18 | |
|---|
| 19 | %compiler_name mpinfort |
|---|
| 20 | %compiler_name_ser mpinfort |
|---|
| 21 | %cpp_options -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION |
|---|
| 22 | %make_options -j 4 |
|---|
| 23 | %compiler_options -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include |
|---|
| 24 | %linker_options -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi |
|---|
| 25 | %execute_command mpirun -v -ve 0-3 -np {{mpi_tasks}} ./palm |
|---|
| 26 | %memory 2000 |
|---|
| 27 | %login_init_cmd source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh |
|---|
| 28 | |
|---|
| 29 | # BATCH-directives to be used for batch jobs. |
|---|
| 30 | # ATTENTION: The following batch directives still need to be adjusted for the |
|---|
| 31 | # NEC Aurora system!!!!!!!!!!!!!! |
|---|
| 32 | BD:#!/bin/bash |
|---|
| 33 | #BD:#PBS -A {{project_account}} |
|---|
| 34 | BD:#PBS -N {{run_id}} |
|---|
| 35 | BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} |
|---|
| 36 | BD:#PBS -l ncpus={{cores}} |
|---|
| 37 | BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} |
|---|
| 38 | BD:#PBS -l mem={{memory}}mb |
|---|
| 39 | BD:#PBS -W x=PARTITION:lena |
|---|
| 40 | BD:#PBS -o {{job_protocol_file}} |
|---|
| 41 | BD:#PBS -j oe |
|---|
| 42 | BD:#PBS -q {{queue}} |
|---|
| 43 | |
|---|
| 44 | #---------------------------------------------------------------------------- |
|---|
| 45 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
|---|
| 46 | #---------------------------------------------------------------------------- |
|---|
| 47 | #IC:ulimit -s unlimited |
|---|
| 48 | |
|---|
| 49 | #---------------------------------------------------------------------------- |
|---|
| 50 | # ERROR-commands - executed when program terminates abnormally |
|---|
| 51 | #---------------------------------------------------------------------------- |
|---|
| 52 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
|---|
| 53 | EC:[[ \$locat = execution ]] && cat PARTICLE_INFOS/* |
|---|
| 54 | |
|---|
| 55 | #---------------------------------------------------------------------------- |
|---|
| 56 | # OUTPUT-commands - executed when program terminates normally |
|---|
| 57 | #---------------------------------------------------------------------------- |
|---|
| 58 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
|---|
| 59 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
|---|
| 60 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
|---|
| 61 | |
|---|
| 62 | # Combine all particle information files |
|---|
| 63 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
|---|
