source: palm/trunk/SCRIPTS/.palm.config.aurora @ 4759

Last change on this file since 4759 was 4759, checked in by suehring, 12 months ago

restore accidently modified config files

  • Property svn:keywords set to Id
File size: 3.1 KB
Line 
1#$Id: .palm.config.aurora 4759 2020-10-26 13:19:52Z suehring $
2#column 1          column 2
3#name of variable  value of variable (~ must not be used)
4#----------------------------------------------------------------------------
5%base_data         ~/palm/current_version/JOBS
6%base_directory    $HOME/palm/current_version
7%fast_io_catalog   /scratch/<replace by LUIS username>
8%source_path       $HOME/palm/current_version/trunk/SOURCE
9%user_source_path  $base_directory/JOBS/$run_identifier/USER_CODE
10%local_jobcatalog  $HOME/job_queue
11#
12%local_ip            130.75.7.130
13%local_username      <replace by LUIS username>
14%compiler_name       mpinfort
15%compiler_name_ser   mpinfort
16%cpp_options         -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION
17%make_options        -j 4
18%compiler_options    -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include
19%linker_options      -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi
20#%hostfile            auto
21%defaultqueue        all
22%submit_command      /usr/bin/qsub
23%memory              2000
24%login_init_cmd      source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh
25%execute_command     mpirun -v -ve 0-3  -np {{mpi_tasks}}  ./palm
26#
27#----------------------------------------------------------------------------
28# INPUT-commands, executed before running PALM - lines must start with "IC:"
29#----------------------------------------------------------------------------
30#IC:ulimit -s unlimited
31#
32#----------------------------------------------------------------------------
33# ERROR-commands - executed when program terminates abnormally
34#----------------------------------------------------------------------------
35EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
36EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
37#
38#----------------------------------------------------------------------------
39# OUTPUT-commands - executed when program terminates normally
40#----------------------------------------------------------------------------
41#
42# Combine 1D- and 3D-profile output (these files are not usable for plotting)
43OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
44OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
45#
46# Combine all particle information files
47OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
48#
49# BATCH-directives to be used for batch jobs.
50# ATTENTION: The batch following batch directives still need to be adjusted for the
51#            NEC Aurora system!!!!!!!!!!!!!!
52BD:#!/bin/bash
53BD:#PBS -N {{run_id}}
54BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
55BD:#PBS -l ncpus={{cores}}
56BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
57BD:#PBS -l mem={{memory}}mb
58BD:#PBS -W x=PARTITION:lena
59BD:#PBS -o {{job_protocol_file}}
60BD:#PBS -j oe
61BD:#PBS -q {{queue}}
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