Ignore:
Timestamp:
Dec 9, 2020 1:08:08 PM (10 months ago)
Author:
gronemeier
Message:

add additional output paths to palm.iofiles and update configuration files accordingly

File:
1 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/SCRIPTS/.palm.config.aurora

    r4759 r4814  
    33#name of variable  value of variable (~ must not be used)
    44#----------------------------------------------------------------------------
    5 %base_data         ~/palm/current_version/JOBS
    6 %base_directory    $HOME/palm/current_version
    7 %fast_io_catalog   /scratch/<replace by LUIS username>
    8 %source_path       $HOME/palm/current_version/trunk/SOURCE
    9 %user_source_path  $base_directory/JOBS/$run_identifier/USER_CODE
    10 %local_jobcatalog  $HOME/job_queue
    11 #
     5%base_directory      $HOME/palm/current_version
     6%base_data           ~/palm/current_version/JOBS
     7%source_path         $HOME/palm/current_version/trunk/SOURCE
     8%user_source_path    $base_data/$run_identifier/USER_CODE
     9%fast_io_catalog     /scratch/<replace by LUIS username>
     10%restart_data_path   /scratch/<replace by LUIS username>
     11%output_data_path    $base_data
     12%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
     13
    1214%local_ip            130.75.7.130
    1315%local_username      <replace by LUIS username>
     16%defaultqueue        all
     17%submit_command      /usr/bin/qsub
     18
    1419%compiler_name       mpinfort
    1520%compiler_name_ser   mpinfort
     
    1823%compiler_options    -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include
    1924%linker_options      -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi
    20 #%hostfile            auto
    21 %defaultqueue        all
    22 %submit_command      /usr/bin/qsub
     25%execute_command     mpirun -v -ve 0-3  -np {{mpi_tasks}}  ./palm
    2326%memory              2000
    2427%login_init_cmd      source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh
    25 %execute_command     mpirun -v -ve 0-3  -np {{mpi_tasks}}  ./palm
    26 #
    27 #----------------------------------------------------------------------------
    28 # INPUT-commands, executed before running PALM - lines must start with "IC:"
    29 #----------------------------------------------------------------------------
    30 #IC:ulimit -s unlimited
    31 #
    32 #----------------------------------------------------------------------------
    33 # ERROR-commands - executed when program terminates abnormally
    34 #----------------------------------------------------------------------------
    35 EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
    36 EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
    37 #
    38 #----------------------------------------------------------------------------
    39 # OUTPUT-commands - executed when program terminates normally
    40 #----------------------------------------------------------------------------
    41 #
    42 # Combine 1D- and 3D-profile output (these files are not usable for plotting)
    43 OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
    44 OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
    45 #
    46 # Combine all particle information files
    47 OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
    48 #
     28
    4929# BATCH-directives to be used for batch jobs.
    50 # ATTENTION: The batch following batch directives still need to be adjusted for the
     30# ATTENTION: The following batch directives still need to be adjusted for the
    5131#            NEC Aurora system!!!!!!!!!!!!!!
    5232BD:#!/bin/bash
     33#BD:#PBS -A {{project_account}}
    5334BD:#PBS -N {{run_id}}
    5435BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
     
    6041BD:#PBS -j oe
    6142BD:#PBS -q {{queue}}
     43
     44#----------------------------------------------------------------------------
     45# INPUT-commands, executed before running PALM - lines must start with "IC:"
     46#----------------------------------------------------------------------------
     47#IC:ulimit -s unlimited
     48
     49#----------------------------------------------------------------------------
     50# ERROR-commands - executed when program terminates abnormally
     51#----------------------------------------------------------------------------
     52EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
     53EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
     54
     55#----------------------------------------------------------------------------
     56# OUTPUT-commands - executed when program terminates normally
     57#----------------------------------------------------------------------------
     58# Combine 1D- and 3D-profile output (these files are not usable for plotting)
     59OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
     60OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
     61
     62# Combine all particle information files
     63OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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