MOSAIK

Timestamp:

Apr 5, 2017 5:01:07 PM (8 years ago)

Author:

kanani

Comment:

--

idefix

@@ -22 +22 @@
 
 == Access and user environment ==
+'''idefix''' can be accessed via:
+{{{ssh -X <username>@idefix.muk.uni-hannover.de}}}
+\\
 
+In your $HOME directory, create {{{.myprofile}}} if missing, and add following content:
+{{{
+export LD_LIBRARY_PATH=/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib:$LD_LIBRARY_PATH
+ulimit -s unlimited
+}}}
+\\
+== Installation of PALM ==
+To download and install the latest PALM version, follow the first steps of the [https://palm.muk.uni-hannover.de/trac/wiki/doc/install/advanced#Packageinstallation advanced installation procedure] as described on the PALM website. The [https://palm.muk.uni-hannover.de/trac/wiki/doc/install/automatic automatic installer] will be available soon. Following steps also need to be carried out and are slightly different to those described on the PALM website. With the automatic installer, the following steps will be carried out automatically. 
 
-== Installation of PALM ==
+(1) To use the PALM scripts, the {{{PATH}}}-variable has to be extended and the environment variable {{{PALM_BIN}}} has to be set in the respective profile of the users default shell (e.g. {{{.myprofile}}}:
+{{{
+  export PATH=$HOME/palm/current_version/trunk/SCRIPTS:$PATH
+  export PALM_BIN=$HOME/palm/current_version/trunk/SCRIPTS
+}}}
+You may have to login again in order to activate these settings.\\\\
+
+(2) Copy '''idefix'''-specific mbuild/mrun configuration file (available from rXXXX) to your working directory:
+{{{
+cp $HOME/palm/current_version/trunk/SCRIPTS/.mrun.config.idefix $HOME/palm/current_version/.mrun.config
+}}}
+Besides many other things, this file contains typical installation parameters like compiler name, compiler options, etc. In this file, enter your '''idefix''' user name where prompted by "<replace by your username>.\\\\
+'''Warning: When editing the configuration file, please NEVER use the TAB key. Otherwise, very confusing errors may occur when mrun is executing.'''\\\\
+
+(3) Compilation of utilities and source code:
+After modifying the configuration file, the respective executables are generated by executing
+{{{
+  mbuild -u -h lcidefix
+}}}
+Pre-compile the PALM code by
+{{{
+  mbuild -h lcidefix
+}}}
+
+(4) Installation verification:
+...example_cbl
 
 == Batch system (not yet available) ==
@@ -31 +67 @@
 
 == Software ==
+(1) Compiler, MPI, NetCDF, ...
+* Intel Fortran
+* mvapich2
+* fftw
+* netcdf4
+* hdf5-parallel \\\\
+
+(2) Data processing and visualization
+* ncl
+* nco/cdo
+* ncview
+* udunits \\\\
 
 }}}