Changes between Version 269 and Version 270 of doc/app/parlist

Timestamp:

Feb 12, 2020 1:12:41 PM (5 years ago)

Author:

scharf

Comment:

--

doc/app/parlist

@@ -52 +52 @@
 || [../agtpar#alloc_factor_mas alloc_factor_mas ] || agt || R || 20.0  || Factor (in percent) describing the memory allocated additionally to the memory needed for initial agents at a given grid cell.
 || [../canpar#alpha_lad alpha_lad] || pcm || R || 9999999.9 || Coefficient for constructing leaf area density profile. 
-|| [../inipar#alpha_surface alpha_surface] || ini || R || 0.0 || Inclination of the model domain with respect to the horizontal (in degrees). 
+|| [../initialization_parameters#alpha_surface alpha_surface] || ini || R || 0.0 || Inclination of the model domain with respect to the horizontal (in degrees). 
 || [../lsmpar#alpha_vangenuchten alpha_vangenuchten] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Value of the coefficient alpha for the calculation of the hydraulic conductivity of soil in the parametrization after Van Genuchten 
-||[../inipar#approximation approximation] || ini || C*20 || 'boussinesq' || Parameter to choose the approximation of the model equations. 
+||[../initialization_parameters#approximation approximation] || ini || C*20 || 'boussinesq' || Parameter to choose the approximation of the model equations. 
 || [../agtpar#asl asl ] || agt || R(100) || 100 * 9999999.9  || Left border of agent source(s) (in m).
 || [../agtpar#asn asn ] || agt || R(100) || 100 * 9999999.9  || North border of agent source(s) (in m).
@@ -66 +66 @@
 || [../chempar#bc_cs_b bc_cs_b] [=#b] || chem || C*20 || 'dirichlet' || Bottom boundary condition of the chemical species (cs) concentration. 
 || [../chempar#bc_cs_t bc_cs_t] || chem || C*20 || 'initial_gradient' || Top boundary condition of the scalar concentration.  
-|| [../inipar#bc_e_b bc_e_b] || ini || C*20 || 'neumann' || Bottom boundary condition of the TKE. 
-|| [../inipar#bc_lr bc_lr] || ini || C*20 || 'cyclic' || Boundary condition along x (for all quantities). 
+|| [../initialization_parameters#bc_e_b bc_e_b] || ini || C*20 || 'neumann' || Bottom boundary condition of the TKE. 
+|| [../initialization_parameters#bc_lr bc_lr] || ini || C*20 || 'cyclic' || Boundary condition along x (for all quantities). 
 || [../agtpar#bc_mas_lr bc_mas_lr] || agt || C*15  || 'absorb'   || Boundary condition for agents at the left and right model boundary.
 || [../agtpar#bc_mas_ns bc_mas_ns] || agt || C*15  || 'absorb'   || Boundary condition for agents at the north and south model boundary.
-|| [../inipar#bc_ns bc_ns] || ini || C*20 || 'cyclic' || Boundary condition along y (for all quantities). 
-|| [../inipar#bc_p_b bc_p_b] || ini || C*20 || 'neumann' || Bottom boundary condition of the perturbation pressure. 
-|| [../inipar#bc_p_t bc_p_t] || ini || C*20 || 'dirichlet' || Top boundary condition of the perturbation pressure. 
+|| [../initialization_parameters#bc_ns bc_ns] || ini || C*20 || 'cyclic' || Boundary condition along y (for all quantities). 
+|| [../initialization_parameters#bc_p_b bc_p_b] || ini || C*20 || 'neumann' || Bottom boundary condition of the perturbation pressure. 
+|| [../initialization_parameters#bc_p_t bc_p_t] || ini || C*20 || 'dirichlet' || Top boundary condition of the perturbation pressure. 
 || [../parpar#bc_par_b bc_par_b] || lpm || C*15 || 'reflect' || Bottom boundary condition for particle transport. 
 || [../parpar#bc_par_lr bc_par_lr] || lpm || C*15 || 'cyclic' || Lateral boundary condition (x-direction) for particle transport. 
 || [../parpar#bc_par_ns bc_par_ns] || lpm || C*15 || 'cyclic' || Lateral boundary condition (y-direction) for particle transport. 
 || [../parpar#bc_par_t bc_par_t] || lpm || C*15 || 'absorb' || Top boundary condition for particle transport. 
-|| [../inipar#bc_pt_b bc_pt_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the potential temperature. 
-|| [../inipar#bc_pt_t bc_pt_t] || ini || C*20 || 'initial_gradient' || Top boundary condition of the potential temperature. 
-|| [../inipar#bc_q_b bc_q_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the water vapor / total water mixing ratio.
-|| [../inipar#bc_q_t bc_q_t] || ini || C*20 || 'neumann' || Top boundary condition of the water vapor / total water mixing ratio. 
-|| [../inipar#bc_s_b bc_s_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the scalar concentration.
-|| [../inipar#bc_s_t bc_s_t] || ini || C*20 || 'neumann' || Top boundary condition of the scalar concentration.
+|| [../initialization_parameters#bc_pt_b bc_pt_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the potential temperature. 
+|| [../initialization_parameters#bc_pt_t bc_pt_t] || ini || C*20 || 'initial_gradient' || Top boundary condition of the potential temperature. 
+|| [../initialization_parameters#bc_q_b bc_q_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the water vapor / total water mixing ratio.
+|| [../initialization_parameters#bc_q_t bc_q_t] || ini || C*20 || 'neumann' || Top boundary condition of the water vapor / total water mixing ratio. 
+|| [../initialization_parameters#bc_s_b bc_s_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the scalar concentration.
+|| [../initialization_parameters#bc_s_t bc_s_t] || ini || C*20 || 'neumann' || Top boundary condition of the scalar concentration.
 || [../oceanpar#bc_sa_t bc_sa_t] || ocean || C*20 || 'neumann' || Top boundary condition of the salinity.
 || [../salsa#bc_salsa_b bc_salsa_b] || salsa || C*20 || 'neumann' || The bottom boundary condition of the aerosol (and gas) concentrations. 
 || [../salsa#bc_salsa_t bc_salsa_t] || salsa || C*20 || 'neumann' || The top boundary condition of the aerosol (and gas) concentrations. 
-|| [../inipar#bc_uv_b bc_uv_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the horizontal wind components u and v. 
-|| [../inipar#bc_uv_t bc_uv_t] || ini || C*20 || 'dirichlet' || Top boundary condition of the horizontal velocity components u and v. 
+|| [../initialization_parameters#bc_uv_b bc_uv_b] || ini || C*20 || 'dirichlet' || Bottom boundary condition of the horizontal wind components u and v. 
+|| [../initialization_parameters#bc_uv_t bc_uv_t] || ini || C*20 || 'dirichlet' || Top boundary condition of the horizontal velocity components u and v. 
 || [../canpar#beta_lad beta_lad] || pcm || R || 9999999.9 || Coefficient for constructing leaf area density profile. 
 || [../biometpar#bio_perct bio_perct] || biomet || L || .T. || Switch the calculation of Perceived Temperature off (.F.) or on (.T.).
@@ -93 +93 @@
 || [../biometpar#bio_utci bio_utci] || biomet || L || .T. || Switch the calculation of Universal Thermal Climate Index off (.F.) or on (.T.). 
 || [../oceanpar#bottom_salinityflux bottom_salinityflux] || ocean || R || 0.0 || Kinematic salinity flux near the surface (in psu m/s). 
-|| [../inipar#building_height building_height] || ini || R || 50.0 || Height of a single building in m. 
-|| [../inipar#building_length_x building_length_x] || ini || R || 50.0 || Width of a single building in m. 
-|| [../inipar#building_length_y building_length_y] || ini || R || 50.0 || Depth of a single building in m. 
+|| [../initialization_parameters#building_height building_height] || ini || R || 50.0 || Height of a single building in m. 
+|| [../initialization_parameters#building_length_x building_length_x] || ini || R || 50.0 || Width of a single building in m. 
+|| [../initialization_parameters#building_length_y building_length_y] || ini || R || 50.0 || Depth of a single building in m. 
 || [../indoorpar#building_type building_type] || indoor || I || 1 || Index of used building type in building database.
-|| [../inipar#building_wall_left building_wall_left] || ini || R || building centered in \\ x-direction || x-coordinate of the left building wall in m. 
-|| [../inipar#building_wall_south building_wall_south] || ini || R || building centered in \\ y-direction || y-coordinate of the South building wall in m. 
+|| [../initialization_parameters#building_wall_left building_wall_left] || ini || R || building centered in \\ x-direction || x-coordinate of the left building wall in m. 
+|| [../initialization_parameters#building_wall_south building_wall_south] || ini || R || building centered in \\ y-direction || y-coordinate of the South building wall in m. 
 || [../bcmpar#bulk_cloud_model bulk_cloud_model] || bulkc || L || .F. || Parameter to switch on the bulk cloud model.
 || [../bcmpar#c_sedimentation c_sedimentation] [=#c] || bulkc || R || 2.0 || Courant number of sedimentation process. 
 || [../lsmpar#c_surface c_surface] || lsm || R || 20000.0 || Heat capacity of the surface (skin layer) per unit of area (in J/m²/K). 
-|| [../inipar#calc_soil_moisture_during_spinup calc_soil_moisture] \\ [../inipar#calc_soil_moisture_during_spinup  _during_spinup] || ini || L || .F. || Solve prognosic equation for soil moisture in the spinup phase. 
+|| [../initialization_parameters#calc_soil_moisture_during_spinup calc_soil_moisture] \\ [../initialization_parameters#calc_soil_moisture_during_spinup  _during_spinup] || ini || L || .F. || Solve prognosic equation for soil moisture in the spinup phase. 
 || [../chempar#call_chem_at_all_substeps   call_chem_at_all_substeps ] || chem || L || .FALSE. || Switch whether chemistry is called at each substep of the Runge-Kutta scheme or just at each full dynamical time step 'dt'.
-|| [../inipar#call_psolver_at_all_substeps call_psolver_at] \\ [../inipar#call_psolver_at_all_substeps _all_substeps] || ini || L || .T. || Switch to steer the call of the pressure solver. 
+|| [../initialization_parameters#call_psolver_at_all_substeps call_psolver_at] \\ [../initialization_parameters#call_psolver_at_all_substeps _all_substeps] || ini || L || .T. || Switch to steer the call of the pressure solver. 
 || [../bcmpar#call_microphysics_at_all_substeps call_microphysics_at] \\ [../bcmpar#call_microphysics_at_all_substeps _all_substeps] || bulkc || L || .F. || Switch to steer the call of 2-moment microphysics. 
 || [../canpar#canopy_drag_coeff canopy_drag_coeff] || pcm || R || 0.0 || Drag coefficient used in the [/wiki/doc/tut/the/canopy#Canopymodel plant canopy model]. 
-|| [../inipar#canopy_mode canopy_mode] || pcm || C*20 || 'block' || Canopy mode. 
-|| [../inipar#canyon_height canyon_height] || ini || R || 50.0 || Street canyon height in m. 
+|| [../initialization_parameters#canopy_mode canopy_mode] || pcm || C*20 || 'block' || Canopy mode. 
+|| [../initialization_parameters#canyon_height canyon_height] || ini || R || 50.0 || Street canyon height in m. 
 || [../lsmpar#canopy_resistance_coefficient canopy_resistance] \\ [../lsmpar#canopy_resistance_coefficient _coefficient] || lsm || R || depends on [../lsmpar#veg_type veg_type] || A coefficient (in 1/hPa) for the dependence of the canopy resistance on water vapor pressure deficit. 
-|| [../inipar#canyon_width_x canyon_width_x] || ini || R || 9999999.9 || Street canyon width in x-direction in m. 
-|| [../inipar#canyon_width_y canyon_width_y] || ini || R || 9999999.9 || Street canyon width in y-direction in m. 
-|| [../inipar#canyon_wall_left canyon_wall_left] || ini || R || canyon centered in \\ x-direction || x-coordinate of the left canyon wall in m. 
-|| [../inipar#canyon_wall_south canyon_wall_south] || ini || R || canyon centered in \\ y-direction || y-coordinate of the South canyon wall in m.
+|| [../initialization_parameters#canyon_width_x canyon_width_x] || ini || R || 9999999.9 || Street canyon width in x-direction in m. 
+|| [../initialization_parameters#canyon_width_y canyon_width_y] || ini || R || 9999999.9 || Street canyon width in y-direction in m. 
+|| [../initialization_parameters#canyon_wall_left canyon_wall_left] || ini || R || canyon centered in \\ x-direction || x-coordinate of the left canyon wall in m. 
+|| [../initialization_parameters#canyon_wall_south canyon_wall_south] || ini || R || canyon centered in \\ y-direction || y-coordinate of the South canyon wall in m.
 || [../chempar#chem_debug0   chem_debug0 ] || chem || L || .FALSE. || Extra print output of chemistry variables. 
 || [../chempar#chem_gasphase_on   chem_gasphase_on ] || chem || L || .TRUE. || Switch for switching off the chemical reactions but still doing the transport for all chemical compounds. Useful for test purposes. 
 || [../chempar#chem_mechanism   chem_mechanism ] || chem || C*30 || 'phstatp' || Parameter for check of chemistry mechanism.
-|| [../inipar#cfl_factor cfl_factor] || ini || R || 0.1, 0.8 or 0.9 || Time step limiting factor. 
+|| [../initialization_parameters#cfl_factor cfl_factor] || ini || R || 0.1, 0.8 or 0.9 || Time step limiting factor. 
 || [../biometpar#clothing clothing] || biomet || I || 1 || Choose clothing outfit for human model. 
-|| [../inipar#cloud_droplets cloud_droplets] || ini || L || .F. || Parameter to switch on usage of cloud droplets. 
+|| [../initialization_parameters#cloud_droplets cloud_droplets] || ini || L || .F. || Parameter to switch on usage of cloud droplets. 
 || [../bcmpar#cloud_scheme cloud_scheme] || bulkc || C*20 || 'saturation_adjust' || Parameter to choose microphysics for bulk cloud physics.
-|| [../inipar#cloud_top_radiation cloud_top_radiation] || ini || L || .F. || Parameter to switch on longwave radiation cooling at cloud-tops. 
+|| [../initialization_parameters#cloud_top_radiation cloud_top_radiation] || ini || L || .F. || Parameter to switch on longwave radiation cooling at cloud-tops. 
 || [../bcmpar#cloud_water_sedimentation cloud_water_sedimentation] || bulkc || L || .F. || Parameterize cloud water sedimentation in cloud physics scheme. 
 || [../agtpar#coll_t_0 coll_t_0] || agt || R ||3.0|| Range of unscreened interactions for social force model (in s).
-|| [../inipar#collective_wait collective_wait] || ini || L || see parameter \\ description || Set barriers in front of collective MPI operations. 
+|| [../initialization_parameters#collective_wait collective_wait] || ini || L || see parameter \\ description || Set barriers in front of collective MPI operations. 
 || [../parpar#collision_kernel collision_kernel] || lpm || C*15 || 'none' || Parameter to steer cloud droplet growth by collision processes. 
 || [../bcmpar#collision_turbulence collision_turbulence] || bulkc || L || .F. || Parameterize turbulence effects on autoconversion and accretion of cloud droplets. 
 || [../sppar#comp_spectra_level comp_spectra_level] || spec || I(100) || no level || Vertical level for which horizontal spectra are to be calculated and output (gridpoints). 
-|| [../inipar#complex_terrain complex_terrain] || ini || L || .F. || Parameter to enable simulations featuring complex topography. 
-|| [../inipar#conserve_volume_flow conserve_volume_flow] || ini || L || .F. || Conservation of volume flow in x- and y-direction. 
-|| [../inipar#conserve_volume_flow_mode conserve_volume] \\ [../inipar#conserve_volume_flow_mode _flow_mode] || ini || C*16 || 'default' || Modus of volume flow conservation. 
+|| [../initialization_parameters#complex_terrain complex_terrain] || ini || L || .F. || Parameter to enable simulations featuring complex topography. 
+|| [../initialization_parameters#conserve_volume_flow conserve_volume_flow] || ini || L || .F. || Conservation of volume flow in x- and y-direction. 
+|| [../initialization_parameters#conserve_volume_flow_mode conserve_volume] \\ [../initialization_parameters#conserve_volume_flow_mode _flow_mode] || ini || C*16 || 'default' || Modus of volume flow conservation. 
 || [../lsmpar#conserve_water_content conserve_water_content] || lsm || L || .T. || Flag parameter for the bottom boundary condition of the soil model. 
 || [../biometpar#consider_obstructions consider_obstructions] || biomet || L || .T. || Considers obstruction. 
 || [../radpar#constant_albedo constant_albedo] || rrtmg || L || .F. || Parameter to fix the surface albedo. 
-|| [../inipar#constant_flux_layer constant_flux_layer] || ini || L || .T. || Parameter to switch on a constant flux layer between the surface and first computational grid level. 
+|| [../initialization_parameters#constant_flux_layer constant_flux_layer] || ini || L || .T. || Parameter to switch on a constant flux layer between the surface and first computational grid level. 
 || [../agtpar#corner_gate_start corner_gate_start] || agt || R ||0.5|| Distance of navigation gate starting point to obstacle corner (in m).
 || [../agtpar#corner_gate_width corner_gate_width] || agt || R ||1.0|| Width of navigation gate at obstacle corners (in m).
-|| [../inipar#coupling_start_time coupling_start_time] || ini || R || 0.0 || Simulation time of a precursor run.. 
+|| [../initialization_parameters#coupling_start_time coupling_start_time] || ini || R || 0.0 || Simulation time of a precursor run.. 
 || [../d3par#cpu_log_barrierwait cpu_log_barrierwait] || run || L || .F. || Set an MPI-barrier at the beginning of each CPU time measurement. 
 || [../d3par#create_disturbances create_disturbances] || run || L || .T. || Switch to impose random perturbations to the horizontal velocity field.
@@ -148 +148 @@
 || [../parpar#curvature_solution_effects curvature_solution] \\ [../parpar#curvature_solution_effects _effects] || lpm || L || .F. || Parameter to consider solution and curvature effects on the equilibrium vapor pressure of cloud droplets. 
 || [../bcmpar#curvature_solution_effects_bulk curvature_solution] \\ [../bcmpar#curvature_solution_effects_bulk _effects_bulk] || bulkc || L || .F. || Parameter to switch on an activation scheme which considers curvature and solution effects of cloud droplet activation. 
-|| [../inipar#cycle_mg cycle_mg] || ini || C*1 || 'w' || Type of cycle to be used with the multi-grid method. 
-|| [../inipar#damp_level_1d damp_level_1d] [=#d] || ini || R || zu(nz + 1) || Height where the damping layer begins in the 1d-model (in m). 
+|| [../initialization_parameters#cycle_mg cycle_mg] || ini || C*1 || 'w' || Type of cycle to be used with the multi-grid method. 
+|| [../initialization_parameters#damp_level_1d damp_level_1d] [=#d] || ini || R || zu(nz + 1) || Height where the damping layer begins in the 1d-model (in m). 
 || [../d3par#data_output data_output] || run || C*10(100) || 100*' ' || Quantities for which 2d cross section and/or 3d volume data are to be output. 
 || [../d3par#data_output_2d_on_each_pe data_output_2d_on] \\ [../d3par#data_output_2d_on_each_pe _each_pe] || run || L || .T. || Output 2d cross section data by one or all processors.
@@ -175 +175 @@
 || [../agtpar#dim_size_factor_agtnum dim_size_factor_agtnum] || agt || R ||1.0|| Factor to modify the agent-number dimension size for agent output.
 || [../parpar#dissipation_classes dissipation_classes] || lpm || I ||10|| Number of dissipation classes to be used in the collision efficiency table. 
-|| [../inipar#dissipation_1d dissipation_1d] || ini || C*20 || 'detering' || Calculation method for the energy dissipation term in the TKE equation of the 1d-model. 
+|| [../initialization_parameters#dissipation_1d dissipation_1d] || ini || C*20 || 'detering' || Calculation method for the energy dissipation term in the TKE equation of the 1d-model. 
 || [../agtpar#dist_to_int_target dist_to_int_target] || agt || R ||0.25|| Distance (in m) at which an intermittent target counts as reached.
 || [../d3par#disturbance_amplitude disturbance_amplitude] || run || R || 0.25 || Maximum perturbation amplitude of the random perturbations imposed to the horizontal velocity field (in m/s).
@@ -184 +184 @@
 || [../d3par#do2d_at_begin do2d_at_begin] || run || L || .F. || Output 2d cross section data by one or all processors. 
 || [../d3par#do3d_at_begin do3d_at_begin] || run || L || .F. || Output of 3d volume data at the beginning of a run. 
-|| [../inipar#dp_external dp_external] || run || L || .F. || External pressure gradient switch. 
-|| [../inipar#dp_smooth dp_smooth] || run || L || .F. || Vertically smooth the external pressure gradient using a sinusoidal smoothing function. 
-|| [../inipar#dp_level_b dp_level_b] || run || R || 0.0 || Lower limit of the vertical range for which the external pressure gradient is applied (in m). 
-|| [../inipar#dpdxy dpdxy] || run || R(2) || 2*0.0 || Values of the external pressure gradient applied in x- and y-direction, respectively (in Pa/m). 
+|| [../initialization_parameters#dp_external dp_external] || run || L || .F. || External pressure gradient switch. 
+|| [../initialization_parameters#dp_smooth dp_smooth] || run || L || .F. || Vertically smooth the external pressure gradient using a sinusoidal smoothing function. 
+|| [../initialization_parameters#dp_level_b dp_level_b] || run || R || 0.0 || Lower limit of the vertical range for which the external pressure gradient is applied (in m). 
+|| [../initialization_parameters#dpdxy dpdxy] || run || R(2) || 2*0.0 || Values of the external pressure gradient applied in x- and y-direction, respectively (in Pa/m). 
 || [../salsa#dpg dpg] || salsa || R(7) || 0.013, 0.054, 0.86, 0.2, 0.2, 0.2, 0.2   || The number geometric mean diameter per aerosol mode (in µm).
 || [../bcmpar#dry_aerosol_radius dry_aerosol_radius] || bulkc || R || 0.05E-6 || The mean geometric radius of the dry aerosol spectrum. 
@@ -213 +213 @@
 || [../parpar#dt_min_part dt_min_part] || lpm || R || 0.0002 || Minimum value for the particle timestep when SGS velocities are used (in s). 
 || [../parpar#dt_prel dt_prel] || lpm || R || 9999999.9 || Temporal interval at which particles are to be released from a particle source (in s). 
-|| [../inipar#dt_pr_1d dt_pr_1d] || ini || R || 9999999.9 || Temporal interval of vertical profile output of the 1D-model (in s). 
+|| [../initialization_parameters#dt_pr_1d dt_pr_1d] || ini || R || 9999999.9 || Temporal interval of vertical profile output of the 1D-model (in s). 
 || [../radpar#dt_radiation dt_radiation] || rrtmg || R || 0.0 || Time step of the radiation model (in s). 
 || [../d3par#dt_restart dt_restart] || run || R || 9999999.9 || Temporal interval at which a new restart run is to be carried out (in s). 
 || [../d3par#dt_run_control dt_run_control] || run || R || 60.0 || Temporal interval at which run control output is to be made (in s). 
-|| [../inipar#dt_run_control_1d dt_run_control_1d] || ini || R || 60.0 || Temporal interval of runtime control output of the 1d-model (in s). 
+|| [../initialization_parameters#dt_run_control_1d dt_run_control_1d] || ini || R || 60.0 || Temporal interval of runtime control output of the 1d-model (in s). 
 || [../salsa#dt_salsa dt_salsa] || salsa || R || 0.1   || Time step for calling aerosol dynamic processes of SALSA.
 || [../parpar#dt_spinup dt_spinup] || ini || R || 60.0 || Time step during integration of the land surface, urban surface, and radiation models during the spinup phase.
@@ -223 +223 @@
 || [../parpar#dt_write_particle_data dt_write_particle] \\ [../parpar#dt_write_particle_data _data] || lpm || R || 9999999.9 || Temporal interval for output of particle data (in s). 
 || [../wind_turbine_par#dtow dtow] || wtm || R(100) || none || Diameter of the tower of the wind turbine used below the rotor. This parameter has to be non-zero if a tower should be included. The parameter needs to be specified for every turbine separately. 
-|| [../inipar#dx dx] || ini || R || 1.0 || Horizontal grid spacing along the x-direction (in m). 
-|| [../inipar#dy dy] || ini || R || 1.0 || Horizontal grid spacing along the y-direction (in m). 
-|| [../inipar#dz dz] || ini || R || no default value || Vertical grid spacing (in m). 
-|| [../inipar#dz_max dz_max] || ini || R || 9999999.9 || Allowed maximum vertical grid spacing (in m). 
-|| [../inipar#dz_stretch_factor dz_stretch_factor] || ini || R || 1.08 || Stretch factor for a vertically stretched grid (see [../inipar#dz_stretch_level dz_stretch_level]). 
-|| [../inipar#dz_stretch_level dz_stretch_level] || ini || R || 100000.0 || Height level above/below which the grid is to be stretched vertically (in m). 
-|| [../inipar#e_init e_init] [=#e] || ini || R || 0.0 || Initial TKE in m^2^s^-2^. 
-|| [../inipar#e_min e_min] || ini || R || 0.0 || Minimum TKE in m^2^s^-2^. 
+|| [../initialization_parameters#dx dx] || ini || R || 1.0 || Horizontal grid spacing along the x-direction (in m). 
+|| [../initialization_parameters#dy dy] || ini || R || 1.0 || Horizontal grid spacing along the y-direction (in m). 
+|| [../initialization_parameters#dz dz] || ini || R || no default value || Vertical grid spacing (in m). 
+|| [../initialization_parameters#dz_max dz_max] || ini || R || 9999999.9 || Allowed maximum vertical grid spacing (in m). 
+|| [../initialization_parameters#dz_stretch_factor dz_stretch_factor] || ini || R || 1.08 || Stretch factor for a vertically stretched grid (see [../initialization_parameters#dz_stretch_level dz_stretch_level]). 
+|| [../initialization_parameters#dz_stretch_level dz_stretch_level] || ini || R || 100000.0 || Height level above/below which the grid is to be stretched vertically (in m). 
+|| [../initialization_parameters#e_init e_init] [=#e] || ini || R || 0.0 || Initial TKE in m^2^s^-2^. 
+|| [../initialization_parameters#e_min e_min] || ini || R || 0.0 || Minimum TKE in m^2^s^-2^. 
 || [../chempar#emiss_factor_main emiss_factor_main] || chem || R(99) || -9999.0 ||  Constant emission scaling factor for MAIN street types, used in the PARAMETERIZED mode of chem_emission module.  
 || [../chempar#emiss_factor_side emiss_factor_side] || chem || R(99) || -9999.0 ||  Constant emission scaling factor for SIDE (secondary) street types, used in the PARAMETERIZED mode of chem_emission module.
@@ -239 +239 @@
 || [../agtpar#end_time_arel end_time_arel] || agt || R ||9999999.9|| Simulation time at which the release of agent is stopped (in s).
 || [../parpar#end_time_prel end_time_prel] || lpm || R || 9999999.9 || Time of the last release of particles (in s). 
-|| [../inipar#end_time_1d end_time_1d] || ini || R || 864000.0 || Time to be simulated for the 1D-model (in s). 
-|| [../inipar#ensemble_member_nr ensemble_member_nr] || ini || I ||0|| Number of statistically independent members of a simulation. 
+|| [../initialization_parameters#end_time_1d end_time_1d] || ini || R || 864000.0 || Time to be simulated for the 1D-model (in s). 
+|| [../initialization_parameters#ensemble_member_nr ensemble_member_nr] || ini || I ||0|| Number of statistically independent members of a simulation. 
 || [../lsmpar#f_shortwave f_shortwave_incoming] [=#f] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Fraction of the net shortwave radiation that is transmitted directly to the top soil layer. 
 || [../salsa#feedback_to_palm feedback_to_palm] || salsa || L || .F. || Parameter to switch on the dynamic feedback to the flow due to condensation of water vapour on aerosol particles. 
 || [../lsmpar#field_capacity field_capacity] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Soil moisture at field capacity (in m³/m³). 
-|| [../inipar#fft_method fft_method] || ini || C*20 || 'system specific' || FFT-method to be used. 
+|| [../initialization_parameters#fft_method fft_method] || ini || C*20 || 'system specific' || FFT-method to be used. 
 || [../flpar#flight_angle flight_angle] || vfm || R(100) || 100*45.0 || Horizontal flight angle (in degrees) describing the flight direction.  
 || [../flpar#flight_begin flight_begin] || vfm || R || 0.0 || Start time of virtual flight measurement. 
 || [../flpar#flight_end flight_end] || vfm || R ||  9999999.9 || End time of virtual flight measurement.  
 || [../flpar#flight_level flight_level] || vfm || R(100) || 100*100.0 || Flight level in meter.
-|| [../inipar#flux_input_mode flux_input_mode] || ini || C*40 || 'approximation-specific' || Parameter to choose the flux unit for input data. 
-|| [../inipar#flux_output_mode flux_output_mode] || ini || C*40 || 'approximation-specific' || Parameter to choose the flux unit for outputdata. 
+|| [../initialization_parameters#flux_input_mode flux_input_mode] || ini || C*40 || 'approximation-specific' || Parameter to choose the flux unit for input data. 
+|| [../initialization_parameters#flux_output_mode flux_output_mode] || ini || C*40 || 'approximation-specific' || Parameter to choose the flux unit for outputdata. 
 || [../d3par#force_print_header force_print_header] || run || L || .F. || Steering of header output to the local file [../iofiles#RUN_CONTROL RUN_CONTROL]. 
-|| [../inipar#galilei_transformation galilei_transformation] [=#g] || ini || L || .F. || Application of a Galilei-transformation to the coordinate system of the model. 
+|| [../initialization_parameters#galilei_transformation galilei_transformation] [=#g] || ini || L || .F. || Application of a Galilei-transformation to the coordinate system of the model. 
 || [../wind_turbine_par#gear_eff gear_eff] || wtm || R || 1.0 || Efficiency of the gear: Loss between rotor and generator. 
 || [../wind_turbine_par#gear_ratio gear_ratio] || wtm || R || 97.0 || Gear ratio from rotor to generator. 
@@ -258 +258 @@
 || [../salsa#H2SO4_init H2SO4_init] [=#h] || salsa || R || 1.0 || Initial number concentration (in m^-3^) of gaseous sulphuric acid H2SO4 (g). 
 || [../salsa#HNO3_init HNO3_init] || salsa || R || 1.0 || Initial number concentration (in m^-3^) of gaseous nitric acid HNO3 (g). 
-|| [../inipar#humidity humidity]  || ini || L || .F. || Parameter to switch on the prognostic equation for water vapor mixing ratio q. 
+|| [../initialization_parameters#humidity humidity]  || ini || L || .F. || Parameter to switch on the prognostic equation for water vapor mixing ratio q. 
 || [../lsmpar#hydraulic_conductivity hydraulic_conductivity] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Hydraulic conductivity of the soil at saturation (in m/s). 
 || [../chempar#icntrl icntrl] [=#i] || chem || I(20) || 0 ||  Selection and steering of the chemistry solver.
 || [../wind_turbine_par#inertia_gen inertia_gen] || wtm || R ||534.116|| Inertia of the generator (in kg/m^2^). 
 || [../wind_turbine_par#inertia_rot inertia_rot] || wtm || R || 34784179.0 || Inertia of the rotor (in kg/m^2). 
-|| [../inipar#inflow_damping_height inflow_damping_height] || ini || R || from precursor run || Height below which the turbulence signal is used for turbulence recycling (in m). 
-|| [../inipar#inflow_damping_width inflow_damping_width] || ini || R || 0.1* [../inipar#inflow_damping_height inflow] \\ [../inipar#inflow_damping_height _damping_height] || Transition range within which the turbulence signal is damped to zero (in m). 
-|| [../inipar#inflow_disturbance_begin inflow_disturbance] \\ [../inipar#inflow_disturbance_begin _begin] || ini || I || MIN(10, nx/2 or ny/2) || Lower limit of the horizontal range for which random perturbations are to be imposed on the horizontal velocity field (gridpoints). 
-|| [../inipar#inflow_disturbance_end inflow_disturbance] \\ [../inipar#inflow_disturbance_end _end] || ini || I || MIN(100, 3/4*nx or 3/4*ny) || Upper limit of the horizontal range for which random perturbations are to be imposed on the horizontal velocity field (gridpoints).
+|| [../initialization_parameters#inflow_damping_height inflow_damping_height] || ini || R || from precursor run || Height below which the turbulence signal is used for turbulence recycling (in m). 
+|| [../initialization_parameters#inflow_damping_width inflow_damping_width] || ini || R || 0.1* [../initialization_parameters#inflow_damping_height inflow] \\ [../initialization_parameters#inflow_damping_height _damping_height] || Transition range within which the turbulence signal is damped to zero (in m). 
+|| [../initialization_parameters#inflow_disturbance_begin inflow_disturbance] \\ [../initialization_parameters#inflow_disturbance_begin _begin] || ini || I || MIN(10, nx/2 or ny/2) || Lower limit of the horizontal range for which random perturbations are to be imposed on the horizontal velocity field (gridpoints). 
+|| [../initialization_parameters#inflow_disturbance_end inflow_disturbance] \\ [../initialization_parameters#inflow_disturbance_end _end] || ini || I || MIN(100, 3/4*nx or 3/4*ny) || Upper limit of the horizontal range for which random perturbations are to be imposed on the horizontal velocity field (gridpoints).
 || [../indoorpar#initial_indoor_temperature initial_indoor_temperature] || indoor || R || 293.15 || Initial indoor temperatures. 
-|| [../inipar#initializing_actions initializing_actions] || ini || C*100 || no default value || Initialization actions to be carried out. 
+|| [../initialization_parameters#initializing_actions initializing_actions] || ini || C*100 || no default value || Initialization actions to be carried out. 
 || [../parpar#initial_weighting_factor initial_weighting] \\ [../parpar#initial_weighting_factor _factor] || lpm || R || 1.0 || Factor to define the real number of initial droplets in a grid cell. 
 || [../salsa#init_aerosol_type init_aerosol_type] || salsa || I || 1 || Aerosol size distribution initialisation type.
 || [../salsa#init_gases_type init_gases_type]  || salsa || I || 1 || Gas concentration initialisation type.
-|| [../inipar#km_constant km_constant] [=#k] || ini || R || variable (computed \\ from TKE) || Constant eddy diffusivities are used (laminar simulations). 
-|| [../inipar#km_damp_max km_damp_max] || ini || R || 0.5*(dx or dy) || Maximum diffusivity used for filtering the velocity field in the vicinity of the outflow (in m^2^/s). 
+|| [../initialization_parameters#km_constant km_constant] [=#k] || ini || R || variable (computed \\ from TKE) || Constant eddy diffusivities are used (laminar simulations). 
+|| [../initialization_parameters#km_damp_max km_damp_max] || ini || R || 0.5*(dx or dy) || Maximum diffusivity used for filtering the velocity field in the vicinity of the outflow (in m^2^/s). 
 || [../lsmpar#l_vangenuchten l_vangenuchten] [=#l] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Value of the coefficient l for the calculation of the hydraulic conductivity of soil in the parametrization after Van Genuchten. 
-|| [../inipar#lad_surface lad_surface] || pcm || R || 0.0 || Surface value of the leaf area density (in m^2^/m^3^). 
-|| [../inipar#lad_vertical_gradient lad_vertical_gradient] || pcm || R(10) || 10*0.0 || Gradient(s) of the leaf area density (in m^2^/m^4^). 
-|| [../inipar#lad_vertical_gradient_level lad_vertical_gradient] \\ [../inipar#lad_vertical_gradient_level _level] || pcm || R(10) || 10*0.0 || Height level above which the gradient of the leaf area density defined by [../inipar#lad_vertical_gradient lad_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#lad_surface lad_surface] || pcm || R || 0.0 || Surface value of the leaf area density (in m^2^/m^3^). 
+|| [../initialization_parameters#lad_vertical_gradient lad_vertical_gradient] || pcm || R(10) || 10*0.0 || Gradient(s) of the leaf area density (in m^2^/m^4^). 
+|| [../initialization_parameters#lad_vertical_gradient_level lad_vertical_gradient] \\ [../initialization_parameters#lad_vertical_gradient_level _level] || pcm || R(10) || 10*0.0 || Height level above which the gradient of the leaf area density defined by [../initialization_parameters#lad_vertical_gradient lad_vertical_gradient] is effective (in m). 
 || [../canpar#lai_beta lai_beta] || pcm || R || 0.0 || Leaf area index needed for construction of leaf area density profile. 
 ||[../lsmpar#lambda_surface_stable lambda_surface_stable ] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Heat conductivity (between atmosphere and soil) (in W/m²/K) in case of stable stratification. 
 ||[../lsmpar#lambda_surface_unstable lambda_surface_unstable ] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Heat conductivity (between atmosphere and soil) (in W/m²/K) in case of unstable stratification. 
-|| [../inipar#large_scale_forcing large_scale_forcing] || ini || L || .F. || Parameter to switch on the use of large-scale forcing information from an external file.
-|| [../inipar#large_scale_subsidence large_scale_subsidence] || ini || L || .F. || Parameter to switch on the use of large scale subsidence/ascent.
-|| [../inipar#latitude latitude] || ini || R || 55.0 || Geographical latitude (in degrees). 
+|| [../initialization_parameters#large_scale_forcing large_scale_forcing] || ini || L || .F. || Parameter to switch on the use of large-scale forcing information from an external file.
+|| [../initialization_parameters#large_scale_subsidence large_scale_subsidence] || ini || L || .F. || Parameter to switch on the use of large scale subsidence/ascent.
+|| [../initialization_parameters#latitude latitude] || ini || R || 55.0 || Geographical latitude (in degrees). 
 || [../lsmpar#leaf_area_index leaf_area_index] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Leaf area index of the canopy (in m²/m²). 
 || [../canpar#leaf_scalar_exch_coeff leaf_scalar_exch_coeff] || pcm || R || 0.0 || Scalar exchange coefficient for a leaf (dimensionless). 
@@ -291 +291 @@
 || [../salsa#listspec listspec] || salsa || C*3(7)  || 'SO4', 6 * ' '  || List of activated aerosol chemical components. 
 || [../parpar#log_sigma log_sigma] || lpm || R(3) || 2.0 || Parameters of initial aerosol spectrum. 
-|| [../inipar#longitude longitude] || ini || R || 0.0 || Geographical longitude (in degrees). 
-|| [../inipar#loop_optimization loop_optimization] || ini || C*16 || 'cache' || Method used to optimize loops for solving the prognostic equations. 
-|| [../inipar#lsf_exception lsf_exception] || ini || L || .F. || Parameter to explicitly allow large-scale forcing in case of topography /= 'flat' .
+|| [../initialization_parameters#longitude longitude] || ini || R || 0.0 || Geographical longitude (in degrees). 
+|| [../initialization_parameters#loop_optimization loop_optimization] || ini || C*16 || 'cache' || Method used to optimize loops for solving the prognostic equations. 
+|| [../initialization_parameters#lsf_exception lsf_exception] || ini || L || .F. || Parameter to explicitly allow large-scale forcing in case of topography /= 'flat' .
 || [../radpar#lw_radiation lw_radiation] || rrtmg || L || .T. || Parameter to switch on/off longwave radiation. 
 || [../chempar#main_street_id main_street_id] [=#m] || chem || I(99) || 0 ||  Index for identifying MAIN streets following street type classes from {{{OpenStreetMap}}}. 
-|| [../inipar#masking_method masking_method]  || ini || L || .F. || Switch for topography boundary conditions in multigrid solver. 
+|| [../initialization_parameters#masking_method masking_method]  || ini || L || .F. || Switch for topography boundary conditions in multigrid solver. 
 || [../d3par#mask_scale_x mask_scale_x] || run || R || 1.0 || Scaling length for masked data output along x-direction. 
 || [../d3par#mask_scale_y mask_scale_y] || run || R || 1.0 || Scaling length for masked data output along y-direction. 
@@ -314 +314 @@
 || [../wind_turbine_par#max_torque_gen max_torque_gen] || wtm || R || 47402.91 || Maximum Torque of the generator (in Nm). 
 || [../wind_turbine_par#max_trq_rate max_trq_rate] || wtm || R || 15000.0 || Maximum generator torque rate (in Nm/s). 
-|| [../inipar#mg_cycles mg_cycles] || ini || I ||-1|| Number of cycles to be used with the multigrid scheme. 
-|| [../inipar#mg_switch_to_pe0_level mg_switch_to] \\ [../inipar#mg_switch_to_pe0_level _pe0_level] || ini || I || see parameter \\ description || Grid level at which data shall be gathered on PE0. 
+|| [../initialization_parameters#mg_cycles mg_cycles] || ini || I ||-1|| Number of cycles to be used with the multigrid scheme. 
+|| [../initialization_parameters#mg_switch_to_pe0_level mg_switch_to] \\ [../initialization_parameters#mg_switch_to_pe0_level _pe0_level] || ini || I || see parameter \\ description || Grid level at which data shall be gathered on PE0. 
 || [../lsmpar#min_canopy_resistance min_canopy_resistance] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Minimum canopy (i.e., stomatal) resistance (in s/m). 
 || [../wind_turbine_par#min_miss min_miss] || wtm || R || 0.008726 || Minimum yaw misalignment for which the actuator stops (in rad). 
@@ -323 +323 @@
 || [../wind_turbine_par#min_reg2 min_reg2] || wtm || R ||9.121.091|| Lower generator speed boundary of region 2 [rad/s]. 
 || [../lsmpar#min_soil_resistance min_soil_resistance] || lsm || R || 50.0 || Minimum soil resistance (in s/m). 
-|| [../inipar#mixing_length_1d mixing_length_1d] || ini || C*20 || 'blackadar' || Mixing length used in the 1d-model. 
+|| [../initialization_parameters#mixing_length_1d mixing_length_1d] || ini || C*20 || 'blackadar' || Mixing length used in the 1d-model. 
 || [../chempar#mode_emis mode_emis] || chem || C*80 || 'PARAMETERIZED' ||  Mode of chemistry emissions (Options: 'PARAMETERIZED', 'DEFAULT', 'PREPROCESSED'). '''Obsolete, use emiss_lod instead'''
-|| [../inipar#momentum_advec momentum_advec] || ini || C*10 || 'ws-scheme' || Advection scheme to be used for the momentum equations. 
+|| [../initialization_parameters#momentum_advec momentum_advec] || ini || C*10 || 'ws-scheme' || Advection scheme to be used for the momentum equations. 
 || [../agtpar#multi_agent_system_end multi_agent_system_end] || agt || R ||9999999.9|| Simulation time at which the multi agent system will stop excuting (in s).
 || [../agtpar#multi_agent_system_start multi_agent_system_start] || agt || R ||0.0|| Simulation time at which the multi agent system will start excuting (in s).
@@ -342 +342 @@
 || [../d3par#netcdf_deflate netcdf_deflate] || run || I ||0|| Data compression level for NetCDF4/HDF5 format. 
 || [../d3par#netcdf_precision netcdf_precision] || ini || C*20(10) || single precision for \\ all output quantities || Defines the accuracy of the netCDF output. 
-|| [../inipar#neutral neutral] || ini || L || .F. || Parameter to switch off calculation of temperature equation. 
+|| [../initialization_parameters#neutral neutral] || ini || L || .F. || Parameter to switch off calculation of temperature equation. 
 || [../salsa#nf2a nf2a] || salsa || R || 1.0 || The number fraction allocated to subrange 2a.
-|| [../inipar#ngsrb ngsrb] || ini || I ||2|| Number of Gauss-Seidel iterations to be carried out on each grid level of the multigrid Poisson solver. 
+|| [../initialization_parameters#ngsrb ngsrb] || ini || I ||2|| Number of Gauss-Seidel iterations to be carried out on each grid level of the multigrid Poisson solver. 
 || [../salsa#NH3_init NH3_init] || salsa || R || 1.0 || Initial number concentration (in m^-3^) of gaseous ammonia NH3 (g). 
 || [../salsa#nj3 nj3] || salsa || I || 1 || Parametrisation for calculating the apparent formation rate of 3 nm sized aerosol particles (J,,3,,, in # s^-1^). 
@@ -359 +359 @@
 || [../d3par#npey npey] || run || I || no default value || Number of processors along y-direction of the virtual processor net. 
 || [../salsa#nsnucl nsnucl] || salsa || I ||0|| The nucleation scheme applied. 
-|| [../inipar#nsor nsor] || run || I ||20|| Number of iterations to be used with the SOR-scheme. 
-|| [../inipar#nsor_ini nsor_ini] || ini || I ||100|| Initial number of iterations with the SOR algorithm. 
+|| [../initialization_parameters#nsor nsor] || run || I ||20|| Number of iterations to be used with the SOR-scheme. 
+|| [../initialization_parameters#nsor_ini nsor_ini] || ini || I ||100|| Initial number of iterations with the SOR algorithm. 
 || [../wind_turbine_par#nturbines nturbines] || wtm || I ||1|| Number of the turbines to be included. Maximum is 100.
-|| [../inipar#nudging nudging] || ini || L || .F. || Parameter to switch on nudging with data from larger scale models or from measurements.
+|| [../initialization_parameters#nudging nudging] || ini || L || .F. || Parameter to switch on nudging with data from larger scale models or from measurements.
 || [../parpar#number_concentration number_concentration] || lpm || R || -1.0 || Initial particle number concentration. 
 || [../agtpar#number_of_agent_groups number_of_agent_groups] || agt || I ||1|| Number of agent groups.
 || [../parpar#number_of_particle_groups number_of] \\ [../parpar#number_of_particle_groups _particle_groups] || lpm || I ||-1|| Number of particle groups to be used. 
 || [../parpar#number_particles_per_gridbox number_particles] \\ [../parpar#number_particles_per_gridbox _per_gridbox] || lpm || I ||1|| Number of created particles per gridbox. 
-|| [../inipar#nx nx] || ini || I || no default value || Number of grid points in x-direction. 
-|| [../inipar#ny ny] || ini || I || no default value || Number of grid points in y-direction. 
-|| [../inipar#nz nz] || ini || I || no default value || Number of grid points in z-direction. 
+|| [../initialization_parameters#nx nx] || ini || I || no default value || Number of grid points in x-direction. 
+|| [../initialization_parameters#ny ny] || ini || I || no default value || Number of grid points in y-direction. 
+|| [../initialization_parameters#nz nz] || ini || I || no default value || Number of grid points in z-direction. 
 || [../d3par#nz_do3d nz_do3d] || ini || I || nz + 1 || Limits the output of 3d volume data along the vertical direction (grid point index k). 
 || [../salsa#OCNV_init OCNV_init] [=#o] || salsa || R ||1.0|| Initial number concentration (in m^-3^) of gaseous non-volatile organic compounds. 
 || [../salsa#OCSV_init OCSV_init] || salsa || R ||1.0|| Initial number concentration (in m^-3^) of gaseous semi-volatile organic compounds. 
-|| [../inipar#omega omega] || ini || R ||7.29E+00|| Angular velocity of the rotating system (in rad s^-1^). 
+|| [../initialization_parameters#omega omega] || ini || R ||7.29E+00|| Angular velocity of the rotating system (in rad s^-1^). 
 || [../wind_turbine_par#omega_rot omega_rot] || wtm || R(100) || 0.0 || Initial rotational speed for each turbine (in rad s^-1^). 
-|| [../inipar#omega_sor omega_sor] || ini || R || 1.8 || Convergence factor to be used with the SOR-scheme. 
+|| [../initialization_parameters#omega_sor omega_sor] || ini || R || 1.8 || Convergence factor to be used with the SOR-scheme. 
 || [../biometpar#orientation_angle orientation_angle] || biomet || F || 180.0 || Orientation angle of front/face of the human model. 
-|| [../inipar#outflow_source_plane outflow_source] \\ [../inipar#outflow_source_plane _plane] || ini || R || - || Horizontal position (in m) of the vertical source plane from where instantaneous values of u, v, w, pt, q, s, and e are copied to the outflow boundary. 
+|| [../initialization_parameters#outflow_source_plane outflow_source] \\ [../initialization_parameters#outflow_source_plane _plane] || ini || R || - || Horizontal position (in m) of the vertical source plane from where instantaneous values of u, v, w, pt, q, s, and e are copied to the outflow boundary. 
 || [../parpar#particles_per_point particles_per_point] [=#p] || lpm || I ||1|| Number of particles to be started per point. 
 || [../parpar#particle_advection_start particle_advection] \\ [../parpar#particle_advection_start _start] || lpm || R || 0.0 || Time of the first release of particles (in s).  
 || [../parpar#particle_maximum_age particle_maximum] \\ [../parpar#particle_maximum_age _age] || lpm || R || 9999999.9 || Maximum allowed age of particles (in s). 
-|| [../inipar#passive_scalar passive_scalar] || ini || L || .F. || Parameter to switch on the prognostic equation for a passive scalar. 
+|| [../initialization_parameters#passive_scalar passive_scalar] || ini || L || .F. || Parameter to switch on the prognostic equation for a passive scalar. 
 || [../lsmpar#pave_depth pave_depth] || lsm || R || 0.0 || Depth of the paved surface. 
 || [../lsmpar#pave_heat_capacity pave_heat_capacity] || lsm || R || 1.94E6 || Heat capacity of the pavement. 
@@ -396 +396 @@
 || [../canpar#plant_canopy_transpiration plant_canopy_transpiration] || pcm || L || .F. || Enables calculation of evapotranspiration and corresponding latent heat flux of the resolved plant canopy which utilizes SW and LW radiation fluxes calculated in RTM. 
 || [../sppar#plot_spectra_level plot_spectra_level] || spec || I(100) || No level || Vertical level(s) for which horizontal spectra are to be plotted (in grid points). 
-|| [../inipar#prandtl_number prandtl_number] || ini || R || 1.0 || Ratio of the eddy diffusivities for momentum and heat (K,,m,,/K,,h,,). 
+|| [../initialization_parameters#prandtl_number prandtl_number] || ini || R || 1.0 || Ratio of the eddy diffusivities for momentum and heat (K,,m,,/K,,h,,). 
 || [../d3par#precipitation_amount_interval precipitation_amount] \\ [../d3par#precipitation_amount_interval _interval] || run || R || value of [../d3par#dt_do2d_xy dt_do2d_xy] || Temporal interval for which the precipitation amount (in mm) shall be calculated and output (in s). 
 || [../d3par#profile_columns profile_columns] || run || I ||3|| Number of coordinate systems to be plotted in one row by plot software '''palmplot'''. 
@@ -403 +403 @@
 || [../parpar#psl psl] || lpm || R(10) || 10*0.0 || Left edge of a particle source (in m). 
 || [../parpar#psn psn] || lpm || R(10) || 10*(ny*dy) || Rear ("north") edge of a particle source (in m). 
-|| [../inipar#psolver psolver] || ini || C*10 || 'poisfft' || Scheme to be used to solve the Poisson equation for the perturbation pressure. 
+|| [../initialization_parameters#psolver psolver] || ini || C*10 || 'poisfft' || Scheme to be used to solve the Poisson equation for the perturbation pressure. 
 || [../parpar#psr psr] || lpm || R(10) || 10*(nx*dx) || Right edge of a particle source (in m). 
 || [../parpar#pss pss] || lpm || R(10) || 10*0.0 || Front ("south") edge of a particle source (in m). 
 || [../parpar#pst pst] || lpm || R(10) || 10*zu(nz/2) || Top edge of a particle source (in m). 
-|| [../inipar#pt_damping_factor pt_damping_factor] || ini || R || 0.0 || Factor for damping the potential temperature. 
-|| [../inipar#pt_damping_width pt_damping_width] || ini || R || 0.0 || Width of the damping domain of the potential temperature (in m). 
-|| [../inipar#pt_reference pt_reference] || ini || R || value of [../inipar#pt_surface pt_surface] || Reference temperature to be used in the buoyancy term (in K). 
-|| [../inipar#pt_surface pt_surface] || ini || R || 300.0 || Surface potential temperature (in K). 
-|| [../inipar#pt_surface_initial_change pt_surface_initial] \\ [../inipar#pt_surface_initial_change _change] || ini || R || 0.0 || Change in surface temperature to be made at the beginning of the 3d run (in K). 
-|| [../inipar#pt_vertical_gradient pt_vertical_gradient] || ini || R(10) || 10*0.0 || Temperature gradient(s) of the initial temperature profile (in K / 100 m). 
-|| [../inipar#pt_vertical_gradient_level pt_vertical_gradient] \\ [../inipar#pt_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the temperature gradient defined by [../inipar#pt_vertical_gradient pt_vertical_gradient] is effective (in m). 
-|| [../inipar#q_surface q_surface] [=#q] || ini || R || 0.0 || Surface water vapor / total water mixing ratio (kg/kg). 
-|| [../inipar#q_surface_initial_change q_surface_initial] \\ [../inipar#q_surface_initial_change _change] || ini || R || 0.0 || Change in surface water vapor / total water mixing ratio to be made at the beginning of the 3d run (kg/kg). 
-|| [../inipar#q_vertical_gradient q_vertical_gradient] || ini || R(10) || 10*0.0 || Humidity gradient(s) of the initial humidity profile (in 1/100 m). 
-|| [../inipar#q_vertical_gradient_level q_vertical_gradient] \\ [../inipar#q_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the humidity gradient defined by [../inipar#q_vertical_gradient q_vertical_gradient] is effective (in m). 
-|| [../inipar#radiation radiation][=#r]  || ini || L || .F. || Parameter to switch on longwave radiation cooling at cloud-tops. 
+|| [../initialization_parameters#pt_damping_factor pt_damping_factor] || ini || R || 0.0 || Factor for damping the potential temperature. 
+|| [../initialization_parameters#pt_damping_width pt_damping_width] || ini || R || 0.0 || Width of the damping domain of the potential temperature (in m). 
+|| [../initialization_parameters#pt_reference pt_reference] || ini || R || value of [../initialization_parameters#pt_surface pt_surface] || Reference temperature to be used in the buoyancy term (in K). 
+|| [../initialization_parameters#pt_surface pt_surface] || ini || R || 300.0 || Surface potential temperature (in K). 
+|| [../initialization_parameters#pt_surface_initial_change pt_surface_initial] \\ [../initialization_parameters#pt_surface_initial_change _change] || ini || R || 0.0 || Change in surface temperature to be made at the beginning of the 3d run (in K). 
+|| [../initialization_parameters#pt_vertical_gradient pt_vertical_gradient] || ini || R(10) || 10*0.0 || Temperature gradient(s) of the initial temperature profile (in K / 100 m). 
+|| [../initialization_parameters#pt_vertical_gradient_level pt_vertical_gradient] \\ [../initialization_parameters#pt_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the temperature gradient defined by [../initialization_parameters#pt_vertical_gradient pt_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#q_surface q_surface] [=#q] || ini || R || 0.0 || Surface water vapor / total water mixing ratio (kg/kg). 
+|| [../initialization_parameters#q_surface_initial_change q_surface_initial] \\ [../initialization_parameters#q_surface_initial_change _change] || ini || R || 0.0 || Change in surface water vapor / total water mixing ratio to be made at the beginning of the 3d run (kg/kg). 
+|| [../initialization_parameters#q_vertical_gradient q_vertical_gradient] || ini || R(10) || 10*0.0 || Humidity gradient(s) of the initial humidity profile (in 1/100 m). 
+|| [../initialization_parameters#q_vertical_gradient_level q_vertical_gradient] \\ [../initialization_parameters#q_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the humidity gradient defined by [../initialization_parameters#q_vertical_gradient q_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#radiation radiation][=#r]  || ini || L || .F. || Parameter to switch on longwave radiation cooling at cloud-tops. 
 || [../radpar#radiation_scheme radiation_scheme] || rrtmg || C*10 || 'clear-sky' || Radiation scheme to be used. 
 || [../parpar#radius radius] || lpm || R(10) || 0.0, 9* \\ 9999999.9 || Particle radius (in m). 
 || [../agtpar#radius_agent radius_agent] || agt || R ||0.25|| Quasi-solid core of agents.
 || [../parpar#radius_classes radius_classes] || lpm || I ||20|| Number of radius classes to be used in the collision efficiency table. 
-|| [../inipar#random_generator random_generator] || ini || C*20 || 'random-parallel' || Random number generator to be used for creating uniformly distributed random numbers. 
-|| [../inipar#random_heatflux random_heatflux] || ini || L || .F. || Parameter to impose random perturbations on the internal two-dimensional near surface heat flux field ''shf.'' 
+|| [../initialization_parameters#random_generator random_generator] || ini || C*20 || 'random-parallel' || Random number generator to be used for creating uniformly distributed random numbers. 
+|| [../initialization_parameters#random_heatflux random_heatflux] || ini || L || .F. || Parameter to impose random perturbations on the internal two-dimensional near surface heat flux field ''shf.'' 
 || [../parpar#random_start_position random_start_position] || lpm || L || .F. || Initial position of the particles is varied randomly within certain limits. 
 || [../agtpar#random_start_position_agents random_start_position] \\ [../agtpar#random_start_position_agents _agents] || agt || L ||.T.|| Initial position of the particles is varied randomly within certain limits. 
@@ -430 +430 @@
 || [../wind_turbine_par#rated_genspeed rated_genspeed] || wtm || R ||1.216.805|| Rated generator speed (in rad/s). 
 || [../wind_turbine_par#rated_power rated_power] || wtm || R || 5296610.0 || Rated power of the wind turbine (in W). 
-|| [../inipar#rayleigh_damping_factor rayleigh_damping] \\ [../inipar#rayleigh_damping_factor _factor] || ini || R || 0.0 and/or 0.01 || Factor for Rayleigh damping. 
-|| [../inipar#rayleigh_damping_height rayleigh_damping] \\ [../inipar#rayleigh_damping_height _height] || ini || R || 2/3*zu(nz) || Height where the Rayleigh damping starts (in m). 
+|| [../initialization_parameters#rayleigh_damping_factor rayleigh_damping] \\ [../initialization_parameters#rayleigh_damping_factor _factor] || ini || R || 0.0 and/or 0.01 || Factor for Rayleigh damping. 
+|| [../initialization_parameters#rayleigh_damping_height rayleigh_damping] \\ [../initialization_parameters#rayleigh_damping_height _height] || ini || R || 2/3*zu(nz) || Height where the Rayleigh damping starts (in m). 
 || [../chempar#rcntrl rcntrl] || chem || R(20) || 0.0 ||  Steering of the chemistry solver. 
 || [../wind_turbine_par#rcx rcx] || wtm || R(100) || none || Longitudinal position of the rotor center (in m). 
@@ -439 +439 @@
 || [../parpar#read_particles_from_restartfile read_particles_from] \\ [../parpar#read_particles_from_restartfile _restartfile] || lpm || L || .T. || Read particle data from the previous run. 
 || [../salsa#read_restart_data_salsa read_restart_data_salsa]  || salsa || L || .F. || Read the restart data of the salsa module from the previous run. 
-|| [../inipar#recycling_width recycling_width] || ini || R || 0.1*[../inipar#nx nx]*[../inipar#dx dx] || Distance of the recycling plane from the inflow boundary (in m). 
-|| [../inipar#reference_state reference_state] || ini || C*20 || '' 'initial_profile' '' || Defines what is used as reference state in the buoyancy term. 
+|| [../initialization_parameters#recycling_width recycling_width] || ini || R || 0.1*[../initialization_parameters#nx nx]*[../initialization_parameters#dx dx] || Distance of the recycling plane from the inflow boundary (in m). 
+|| [../initialization_parameters#reference_state reference_state] || ini || C*20 || '' 'initial_profile' '' || Defines what is used as reference state in the buoyancy term. 
 || [../userpar#region region] || user || C*40(0:9) |||| Name(s) of the subdomain(s) defined by the user. 
 || [../salsa#reglim reglim]  || salsa || R(3) || 3.0E-9, 5.0E-8, 1.0E-5  || Aerosol diameter limits for the subranges (in m) in the following order: lower limit of 1, upper limit of 1 and lower limit of 2, upper limit of 2. 
 || [../agtpar#repuls_agent repuls_agent] || agt || R ||1.5|| Magnitude of the repulsive force agents exert on each other (in m^2^ s^-2^).
 || [../agtpar#repuls_wall repuls_wall] || agt || R ||7.0|| Magnitude of the repulsive force obstacles exert on agents (in m^2^ s^-2^).
-|| [../inipar#residual_limit residual_limit] || ini || R || 1.0E-6 || Largest residual permitted for the multigrid scheme (in s^-2^m^-3^). 
+|| [../initialization_parameters#residual_limit residual_limit] || ini || R || 1.0E-6 || Largest residual permitted for the multigrid scheme (in s^-2^m^-3^). 
 || [../lsmpar#residual_moisture residual_moisture] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Residual soil moisture content (in m³/m³). 
 || [../d3par#restart_time restart_time] || run || R || 9999999.9 || Simulated time after which a restart run is to be carried out (in s). 
@@ -451 +451 @@
 || [../wind_turbine_par#rnac rnac] || wtm || R(100) || none || Radius of the nacelle for each turbine (in m). This parameter has to be non-zero if the nacelle should be included. 
 || [../lsmpar#root_fraction root_fraction] || lsm || R(4) || depends on [../lsmpar#veg_type veg_type] || Root distribution over the four soil layers. 
-|| [../inipar#roughness_length roughness_length] || ini || R || 0.1 || Roughness length (in m). 
+|| [../initialization_parameters#roughness_length roughness_length] || ini || R || 0.1 || Roughness length (in m). 
 || [../wind_turbine_par#rr rr] || wtm || R(100) ||63|| Radius of the rotor (in m). 
-|| [../inipar#s_surface s_surface] [=#s] || ini || R || 0.0 || Surface value of the passive scalar (in kg m^-3^ or ppm). 
-|| [../inipar#s_surface_initial_change s_surface_initial] \\ [../inipar#s_surface_initial_change _change] || ini || R || 0.0 || Change in surface scalar concentration to be made at the beginning of the 3d run (in kg m^-3^ or ppm). 
-|| [../inipar#s_vertical_gradient s_vertical_gradient] || ini || R(10) || 10*0.0 || Scalar concentration gradient(s) of the initial scalar concentration profile (in (kg m^-3^ or ppm) / 100 m). 
-|| [../inipar#s_vertical_gradient_level s_vertical_gradient] \\ [../inipar#s_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the scalar gradient defined by [../inipar#s_vertical_gradient s_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#s_surface s_surface] [=#s] || ini || R || 0.0 || Surface value of the passive scalar (in kg m^-3^ or ppm). 
+|| [../initialization_parameters#s_surface_initial_change s_surface_initial] \\ [../initialization_parameters#s_surface_initial_change _change] || ini || R || 0.0 || Change in surface scalar concentration to be made at the beginning of the 3d run (in kg m^-3^ or ppm). 
+|| [../initialization_parameters#s_vertical_gradient s_vertical_gradient] || ini || R(10) || 10*0.0 || Scalar concentration gradient(s) of the initial scalar concentration profile (in (kg m^-3^ or ppm) / 100 m). 
+|| [../initialization_parameters#s_vertical_gradient_level s_vertical_gradient] \\ [../initialization_parameters#s_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the scalar gradient defined by [../initialization_parameters#s_vertical_gradient s_vertical_gradient] is effective (in m). 
 || [../oceanpar#salinity salinity] || ocean || L || .T. || Parameter to switch on/off calculation of salinity equation. 
 || [../salsa#salsa_emission_mode salsa_emission_mode] || salsa || C(20) || 'no_source'  || Source mode for aerosol and gaseous emissions. 
 || [../oceanpar#sa_surface sa_surface] || ocean || R || 35.0 || Surface salinity (in psu). 
 || [../oceanpar#sa_vertical_gradient sa_vertical_gradient] || ocean || R(10) || 10*0.0 || Salinity gradient(s) of the initial salinity profile (in psu / 100 m). 
-|| [../oceanpar#sa_vertical_gradient_level sa_vertical_gradient] \\ [../inipar#sa_vertical_gradient_level _level] || ocean || R(10) || 10*0.0 || Height level above which the salinity gradient defined by [../oceanpar#sa_vertical_gradient sa_vertical_gradient] is effective (in m). 
+|| [../oceanpar#sa_vertical_gradient_level sa_vertical_gradient] \\ [../initialization_parameters#sa_vertical_gradient_level _level] || ocean || R(10) || 10*0.0 || Height level above which the salinity gradient defined by [../oceanpar#sa_vertical_gradient sa_vertical_gradient] is effective (in m). 
 || [../lsmpar#saturation_moisture saturation_moisture] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Soil moisture at saturation (in m³/m³). 
-|| [../inipar#scalar_advec scalar_advec] || ini || C*10 || 'ws-scheme' || Advection scheme to be used for the scalar quantities. 
-|| [../inipar#scalar_rayleigh_damping scalar_rayleigh] \\ [../inipar#scalar_rayleigh_damping _damping] || ini || L || .T. || Application of Rayleigh damping to scalars. 
+|| [../initialization_parameters#scalar_advec scalar_advec] || ini || C*10 || 'ws-scheme' || Advection scheme to be used for the scalar quantities. 
+|| [../initialization_parameters#scalar_rayleigh_damping scalar_rayleigh] \\ [../initialization_parameters#scalar_rayleigh_damping _damping] || ini || L || .T. || Application of Rayleigh damping to scalars. 
 || [../agtpar#scan_radius_agent scan_radius_agent] || agt || R ||3.0|| Radius around the agent in which it scans for obstacles (in m).
 || [../d3par#section_xy section_xy] || run || I(100) || no section || Position of cross section(s) for output of 2d horizontal cross sections (grid point index k). 
@@ -496 +496 @@
 || [../flpar#speed_agl speed_agl] || vfm || R(100) ||100*25.0|| Horizontal speed of the aircraft above ground level in meter per second. 
 || [../wind_turbine_par#speed_control speed_control] || wtm || L || .F. || Parameter to switch on the speed control. 
-|| [../inipar#spinup_pt_amplitude spinup_pt_amplitude] || ini || R || 0.0 || Representative amplitude of the diurnal near-surface temperature variation during the spinup phase. 
-|| [../inipar#spinup_pt_mean spinup_pt_mean] || ini || R || [value of] [pt_surface] || Mean near-surface air temperature during the spinup phase (see spinup_time). 
-|| [../inipar#spinup_time spinup_time] || ini || R || 0.0 || Parameter for steering of the spinup time. 
-|| [../inipar#statistic_regions statistic_regions] || ini || I ||0|| Number of additional user-defined subdomains for which statistical analysis and corresponding output (profiles, time series) shall be made. 
+|| [../initialization_parameters#spinup_pt_amplitude spinup_pt_amplitude] || ini || R || 0.0 || Representative amplitude of the diurnal near-surface temperature variation during the spinup phase. 
+|| [../initialization_parameters#spinup_pt_mean spinup_pt_mean] || ini || R || [value of] [pt_surface] || Mean near-surface air temperature during the spinup phase (see spinup_time). 
+|| [../initialization_parameters#spinup_time spinup_time] || ini || R || 0.0 || Parameter for steering of the spinup time. 
+|| [../initialization_parameters#statistic_regions statistic_regions] || ini || I ||0|| Number of additional user-defined subdomains for which statistical analysis and corresponding output (profiles, time series) shall be made. 
 || [../agtpar#step_dealloc_mas step_dealloc_mas] || agt || I ||100|| Interval for memory reallocation.
 || [../oceanpar#stokes_waveheight stokes_waveheight] || ocean || R || 0.0 || Parameter to switch on and set the effects of Langmuir circulation in PALM's ocean mode.
 || [../oceanpar#stokes_wavelength stokes_wavelength] || ocean || R || 0.0 || Parameter to switch on and set the effects of Langmuir circulation in PALM's ocean mode.
-|| [../inipar#subs_vertical_gradient subs_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the profile for the large scale subsidence/ascent velocity (in (m/s) / 100 m). 
-|| [../inipar#subs_vertical_gradient_level subs_vertical_gradient] \\ [../inipar#subs_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient for the subsidence/ascent velocity defined by [../inipar#subs_vertical_gradient subs_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#subs_vertical_gradient subs_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the profile for the large scale subsidence/ascent velocity (in (m/s) / 100 m). 
+|| [../initialization_parameters#subs_vertical_gradient_level subs_vertical_gradient] \\ [../initialization_parameters#subs_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient for the subsidence/ascent velocity defined by [../initialization_parameters#subs_vertical_gradient subs_vertical_gradient] is effective (in m). 
 || [../biometpar#sun_in_south sun_in_south] || biomet || L || .F. || Azimuthal position of the sun.  
 || [../salsa#surface_aerosol_flux surface_aerosol_flux] || salsa || R(7) || 1.04e+11, 3.23E+10, 5.4E+6, 0.0, 0.0, 0.0, 0.0 || The total surface number flux per aerosol mode (in m^-2^s^-1^).
@@ -510 +510 @@
 || [../chempar#surface_csflux surface_csflux] || chem || R(99) || 0.0 ||  Values of surface fluxes of chemistry emissions to be used in the PARAMETERIZED mode.
 || [../chempar#surface_csflux_name surface_csflux_name] || chem || C*11(99) || 'novalue' ||  Names of chemical species which are emitted.
-|| [../inipar#surface_heatflux surface_heatflux] || ini || R || no prescribed \\ heatflux || Kinematic sensible heat flux at the bottom surface (in K m/s). 
-|| [../inipar#surface_pressure surface_pressure] || ini || R || 1013.25 || Atmospheric pressure at the surface (in hPa). 
-|| [../inipar#surface_scalarflux surface_scalarflux] || ini || R || 0.0 || Scalar flux at the surface (in kg m^-2^ s^-1^ or ppm m s^-1^). 
-|| [../inipar#surface_waterflux surface_waterflux] || ini || R || 0.0 || Kinematic water flux near the surface (in m/s). 
+|| [../initialization_parameters#surface_heatflux surface_heatflux] || ini || R || no prescribed \\ heatflux || Kinematic sensible heat flux at the bottom surface (in K m/s). 
+|| [../initialization_parameters#surface_pressure surface_pressure] || ini || R || 1013.25 || Atmospheric pressure at the surface (in hPa). 
+|| [../initialization_parameters#surface_scalarflux surface_scalarflux] || ini || R || 0.0 || Scalar flux at the surface (in kg m^-2^ s^-1^ or ppm m s^-1^). 
+|| [../initialization_parameters#surface_waterflux surface_waterflux] || ini || R || 0.0 || Kinematic water flux near the surface (in m/s). 
 || [../radpar#sw_radiation sw_radiation] || rrtmg || L || .T. || Parameter to switch on/off shortwave radiation. 
 || [../d3par#synchronous_exchange synchronous_exchange] || run || L || .F. || Defines how MPI handles the exchange of ghost points. 
@@ -523 +523 @@
 || [../wind_turbine_par#time_turbine_on time_turbine_on] || wtm || R || 0.0 || Simulation time at which the turbines are switched on. 
 || [../radpar#time_utc_init time_utc_init] || rrtmg || R || 43200.0 || UTC time at model start in seconds starting from midnight. 
-|| [../inipar#timestep_scheme timestep_scheme] || ini || C*20 || 'runge-kutta-3' || Time step scheme to be used for integration of the prognostic variables. 
-|| [../inipar#topography topography] || ini || C*40 || 'flat' || Topography mode. 
-|| [../inipar#topography_grid_convention topography_grid] \\ [../inipar#topography_grid_convention _convention] || ini || C*11 || default depends on \\ value of [../inipar#topography topography] || Convention for defining the topography grid. 
-|| [../inipar#top_heatflux top_heatflux] || ini || R || no prescribed \\ heatflux || Kinematic sensible heat flux at the top surface (in K m/s). 
-|| [../inipar#top_momentumflux_u top_momentumflux_u] || ini || R || no prescribed momentumflux || Momentum flux along x at the top boundary (in m^2^/s^2^). 
-|| [../inipar#top_momentumflux_v top_momentumflux_v] || ini || R || no prescribed momentumflux || Momentum flux along y at the top boundary (in m^2^/s^2^). 
+|| [../initialization_parameters#timestep_scheme timestep_scheme] || ini || C*20 || 'runge-kutta-3' || Time step scheme to be used for integration of the prognostic variables. 
+|| [../initialization_parameters#topography topography] || ini || C*40 || 'flat' || Topography mode. 
+|| [../initialization_parameters#topography_grid_convention topography_grid] \\ [../initialization_parameters#topography_grid_convention _convention] || ini || C*11 || default depends on \\ value of [../initialization_parameters#topography topography] || Convention for defining the topography grid. 
+|| [../initialization_parameters#top_heatflux top_heatflux] || ini || R || no prescribed \\ heatflux || Kinematic sensible heat flux at the top surface (in K m/s). 
+|| [../initialization_parameters#top_momentumflux_u top_momentumflux_u] || ini || R || no prescribed momentumflux || Momentum flux along x at the top boundary (in m^2^/s^2^). 
+|| [../initialization_parameters#top_momentumflux_v top_momentumflux_v] || ini || R || no prescribed momentumflux || Momentum flux along y at the top boundary (in m^2^/s^2^). 
 || [../oceanpar#top_salinityflux top_salinityflux] || ocean || R || no prescribed \\ salinityflux || Kinematic salinity flux at the top boundary, i.e. the sea surface (in psu m/s). 
-|| [../inipar#top_scalarflux top_scalarflux] || ini || R || no prescribed \\ scalarflux || Scalar flux at the top surface (in kg m^-2^ s^-1^ or ppm m s^-1^). 
-|| [../inipar#transpose_compute_overlap transpose_compute] \\ [../inipar#transpose_compute_overlap _overlap] || ini || L || .F. || Parameter to switch on parallel execution of fft and transpositions (with MPI_ALLTOALL). 
-|| [../inipar#tunnel_height tunnel_height] || ini || R || 0.2*nz || Height of outer-wall tunnel top. 
-|| [../inipar#tunnel_length tunnel_length] || ini || R || 9999999.9 || Length of the tunnel. 
-|| [../inipar#tunnel_width_x tunnel_width_x] || ini || R || 9999999.9 || Tunnel width along x-direction. 
-|| [../inipar#tunnel_width_y tunnel_width_y] || ini || R || 9999999.9 || Tunnel width along y-direction. 
-|| [../inipar#tunnel_wall_depth tunnel_wall_depth] || ini || R || max( dx, dy, dz ) || Depth of tunnel walls. 
-|| [../inipar#turbulent_inflow turbulent_inflow] || ini || L || .F. || Generates a turbulent inflow at side boundaries using a turbulence recycling method. 
-|| [../inipar#turbulent_outflow turbulent_outflow] || ini || L || .F. || Generates a turbulent outflow at side boundaries using a turbulence recycling method. 
+|| [../initialization_parameters#top_scalarflux top_scalarflux] || ini || R || no prescribed \\ scalarflux || Scalar flux at the top surface (in kg m^-2^ s^-1^ or ppm m s^-1^). 
+|| [../initialization_parameters#transpose_compute_overlap transpose_compute] \\ [../initialization_parameters#transpose_compute_overlap _overlap] || ini || L || .F. || Parameter to switch on parallel execution of fft and transpositions (with MPI_ALLTOALL). 
+|| [../initialization_parameters#tunnel_height tunnel_height] || ini || R || 0.2*nz || Height of outer-wall tunnel top. 
+|| [../initialization_parameters#tunnel_length tunnel_length] || ini || R || 9999999.9 || Length of the tunnel. 
+|| [../initialization_parameters#tunnel_width_x tunnel_width_x] || ini || R || 9999999.9 || Tunnel width along x-direction. 
+|| [../initialization_parameters#tunnel_width_y tunnel_width_y] || ini || R || 9999999.9 || Tunnel width along y-direction. 
+|| [../initialization_parameters#tunnel_wall_depth tunnel_wall_depth] || ini || R || max( dx, dy, dz ) || Depth of tunnel walls. 
+|| [../initialization_parameters#turbulent_inflow turbulent_inflow] || ini || L || .F. || Generates a turbulent inflow at side boundaries using a turbulence recycling method. 
+|| [../initialization_parameters#turbulent_outflow turbulent_outflow] || ini || L || .F. || Generates a turbulent outflow at side boundaries using a turbulence recycling method. 
 || [../biometpar#turn_to_sun turn_to_sun] || biomet || L || .T. || Orientation of the front/face of the human model. 
-|| [../inipar#u_bulk u_bulk] [=#u] || ini || R || 0.0 || u-component of the predefined bulk velocity (in m/s). 
-|| [../inipar#u_profile u_profile] || ini || R(100) || 100 * 9999999.9 || Values of u-velocity component to be used as initial profile (in m/s). 
-|| [../inipar#ug_surface ug_surface] || ini || R || 0.0 || u-component of the geostrophic wind at the surface (in m/s). 
-|| [../inipar#ug_vertical_gradient ug_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the initial profile of the u-component of the geostrophic wind (in 1/100s). 
-|| [../inipar#ug_vertical_gradient_level ug_vertical_gradient] \\ [../inipar#ug_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient defined by [../inipar#ug_vertical_gradient ug_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#u_bulk u_bulk] [=#u] || ini || R || 0.0 || u-component of the predefined bulk velocity (in m/s). 
+|| [../initialization_parameters#u_profile u_profile] || ini || R(100) || 100 * 9999999.9 || Values of u-velocity component to be used as initial profile (in m/s). 
+|| [../initialization_parameters#ug_surface ug_surface] || ini || R || 0.0 || u-component of the geostrophic wind at the surface (in m/s). 
+|| [../initialization_parameters#ug_vertical_gradient ug_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the initial profile of the u-component of the geostrophic wind (in 1/100s). 
+|| [../initialization_parameters#ug_vertical_gradient_level ug_vertical_gradient] \\ [../initialization_parameters#ug_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient defined by [../initialization_parameters#ug_vertical_gradient ug_vertical_gradient] is effective (in m). 
 || [../biometpar#uv_exposure uv_exposure] || biomet || L || .F. || Activation of the UV Exposure Model.
-|| [../inipar#uv_heights uv_heights] || ini || R(100) || 100 * 9999999.9 || Height levels for prescribed u,v-profiles (in m). 
-|| [../inipar#use_cmax use_cmax] || ini || L || .T. || Parameter to choose calculation method of the phase velocity in case of radiation boundary conditions. 
-|| [../inipar#use_free_convection_scaling use_free_convection] \\ [../inipar#use_free_convection_scaling _scaling] || ini || L || .F. || Parameter to switch on the use of the local free convection velocity scale. 
+|| [../initialization_parameters#uv_heights uv_heights] || ini || R(100) || 100 * 9999999.9 || Height levels for prescribed u,v-profiles (in m). 
+|| [../initialization_parameters#use_cmax use_cmax] || ini || L || .T. || Parameter to choose calculation method of the phase velocity in case of radiation boundary conditions. 
+|| [../initialization_parameters#use_free_convection_scaling use_free_convection] \\ [../initialization_parameters#use_free_convection_scaling _scaling] || ini || L || .F. || Parameter to switch on the use of the local free convection velocity scale. 
 || [../parpar#use_sgs_for_particles use_sgs_for_particles] || lpm || L || .F. || Use subgrid-scale velocities for particle advection. 
-|| [../inipar#use_subsidence_tendencies use_subsidence] \\ [../inipar#use_subsidence_tendencies _tendencies] || ini || L || .F. || Parameter to choose the calculation method of subsidence in case of runs with large scale forcing. 
-|| [../inipar#use_surface_fluxes use_surface_fluxes] || ini || L || .F. || Parameter to steer the treatment of the subgrid-scale vertical fluxes within the diffusion terms at k=1 (bottom boundary). 
-|| [../inipar#use_top_fluxes use_top_fluxes] || ini || L || .F. || Parameter to steer the treatment of the subgrid-scale vertical fluxes within the diffusion terms at k=nz (top boundary). 
-|| [../inipar#use_ug_for_galilei_tr use_ug_for_galilei_tr] || ini || L || .T. || Switch to determine the translation velocity in case that a Galilean transformation is used. 
-|| [../inipar#use_upstream_for_tke use_upstream] \\ [../inipar#use_upstream_for_tke _for_tke] || ini || L || .F. || Parameter to choose the advection/timestep scheme to be used for the subgrid-scale TKE. 
-|| [../inipar#v_bulk v_bulk] [=#v] || ini || R || 0.0 || v-component of the predefined bulk velocity (in m/s). 
-|| [../inipar#v_profile v_profile] || ini || R(100) || 100 * 9999999.9 || Values of v-velocity component to be used as initial profile (in m/s). 
+|| [../initialization_parameters#use_subsidence_tendencies use_subsidence] \\ [../initialization_parameters#use_subsidence_tendencies _tendencies] || ini || L || .F. || Parameter to choose the calculation method of subsidence in case of runs with large scale forcing. 
+|| [../initialization_parameters#use_surface_fluxes use_surface_fluxes] || ini || L || .F. || Parameter to steer the treatment of the subgrid-scale vertical fluxes within the diffusion terms at k=1 (bottom boundary). 
+|| [../initialization_parameters#use_top_fluxes use_top_fluxes] || ini || L || .F. || Parameter to steer the treatment of the subgrid-scale vertical fluxes within the diffusion terms at k=nz (top boundary). 
+|| [../initialization_parameters#use_ug_for_galilei_tr use_ug_for_galilei_tr] || ini || L || .T. || Switch to determine the translation velocity in case that a Galilean transformation is used. 
+|| [../initialization_parameters#use_upstream_for_tke use_upstream] \\ [../initialization_parameters#use_upstream_for_tke _for_tke] || ini || L || .F. || Parameter to choose the advection/timestep scheme to be used for the subgrid-scale TKE. 
+|| [../initialization_parameters#v_bulk v_bulk] [=#v] || ini || R || 0.0 || v-component of the predefined bulk velocity (in m/s). 
+|| [../initialization_parameters#v_profile v_profile] || ini || R(100) || 100 * 9999999.9 || Values of v-velocity component to be used as initial profile (in m/s). 
 || [../salsa#van_der_waals_coagc van_der_waals_coagc] || salsa || L ||.F.|| Parameter to switch on the van der Waals forces when calculating the collision kernel in the coagulation subroutine.
-|| [../inipar#vdi_checks vdi_checks] || ini || L || .F. || Switch the internal controls according to VDI 3783 Part 9 on. 
+|| [../initialization_parameters#vdi_checks vdi_checks] || ini || L || .F. || Switch the internal controls according to VDI 3783 Part 9 on. 
 || [../lsmpar#veg_type veg_type] || lsm || I ||2|| Vegetation type to be used in the land surface model. 
 || [../lsmpar#vegetation_coverage vegetation_coverage] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Vegetation coverage of the surface. 
 || [../bcmpar#ventilation_effect ventilation_effect] || bulkc || L || .T. || Parameterize ventilation effect on evaporation of raindrops. 
 || [../parpar#vertical_particle_advection vertical_particle] \\ [../parpar#vertical_particle_advection _advection] || lpm || L || .T. || Switch on/off vertical particle transport.
-|| [../inipar#vg_surface vg_surface] || ini || R || 0.0 || v-component of the geostrophic wind at the surface (in m/s). 
-|| [../inipar#vg_vertical_gradient vg_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the initial profile of thev-component of the geostrophic wind (in 1/100s). 
-|| [../inipar#vg_vertical_gradient_level vg_vertical_gradient] \\ [../inipar#vg_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient defined by [../inipar#vg_vertical_gradient vg_vertical_gradient] is effective (in m). 
-|| [../inipar#wall_adjustment wall_adjustment] [=#w] || ini || L || .T. || Parameter to restrict the mixing length in the vicinity of the bottom boundary (and near vertical walls of a non-flat [../inipar#topography topography]). 
-|| [../inipar#wall_heatflux wall_heatflux] || ini || R(5) || 5*0.0 || Prescribed kinematic sensible heat flux in K m/s at the five topography faces. 
-|| [../inipar#wall_humidityflux wall_humidityflux] || ini || R(5) || 5*0.0 || Prescribed kinematic humidity flux in m/s at the five topography faces. 
+|| [../initialization_parameters#vg_surface vg_surface] || ini || R || 0.0 || v-component of the geostrophic wind at the surface (in m/s). 
+|| [../initialization_parameters#vg_vertical_gradient vg_vertical_gradient] || ini || R(10) || 10*0.0 || Gradient(s) of the initial profile of thev-component of the geostrophic wind (in 1/100s). 
+|| [../initialization_parameters#vg_vertical_gradient_level vg_vertical_gradient] \\ [../initialization_parameters#vg_vertical_gradient_level _level] || ini || R(10) || 10*0.0 || Height level above which the gradient defined by [../initialization_parameters#vg_vertical_gradient vg_vertical_gradient] is effective (in m). 
+|| [../initialization_parameters#wall_adjustment wall_adjustment] [=#w] || ini || L || .T. || Parameter to restrict the mixing length in the vicinity of the bottom boundary (and near vertical walls of a non-flat [../initialization_parameters#topography topography]). 
+|| [../initialization_parameters#wall_heatflux wall_heatflux] || ini || R(5) || 5*0.0 || Prescribed kinematic sensible heat flux in K m/s at the five topography faces. 
+|| [../initialization_parameters#wall_humidityflux wall_humidityflux] || ini || R(5) || 5*0.0 || Prescribed kinematic humidity flux in m/s at the five topography faces. 
 || [../oceanpar#wall_salinityflux wall_salinityflux] || ocean || R(0:5) || 6*0.0 || Prescribed kinematic salinity flux in Psu m/s at the six topography faces
-|| [../inipar#wall_scalarflux wall_scalarflux] || ini || R(5) || 5*0.0 || Prescribed scalar flux at the five topography faces (in kg m^-2^ s^-1^ or ppm m s^-1^). 
+|| [../initialization_parameters#wall_scalarflux wall_scalarflux] || ini || R(5) || 5*0.0 || Prescribed scalar flux at the five topography faces (in kg m^-2^ s^-1^ or ppm m s^-1^). 
 || [../oceanpar#wave_breaking wave_breaking] || ocean || L || .F. || Parameter to switch on turbulence generation by wave breaking. 
 || [../lsmpar#wilting_point wilting_point] || lsm || R || depends on [../lsmpar#soil_type soil_type] || Soil moisture at permanent wilting point (in m³/m³). 
@@ -581 +581 @@
 || [../wind_turbine_par#yaw_control yaw_control] || wtm || L || .F. || Parameter to switch on the yaw controller. 
 || [../wind_turbine_par#yaw_speed yaw_speed] || wtm || R || 0.005236 || Speed of the yaw actuator (in rad/s). 
-|| [../inipar#y_shift y_shift] || ini || I ||0|| Distance of y-shift for cyclic and non-cyclic boundary conditions (in number of PEs). 
+|| [../initialization_parameters#y_shift y_shift] || ini || I ||0|| Distance of y-shift for cyclic and non-cyclic boundary conditions (in number of PEs). 
 || [../lsmpar#z0_eb z0_eb] [=#z] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Roughness length for momentum (in m). 
 || [../lsmpar#z0h_eb z0h_eb] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Roughness length for heat (in m). 
 || [../lsmpar#z0q_eb z0q_eb] || lsm || R || depends on [../lsmpar#veg_type veg_type] || Roughness length for moisture (in m). 
-|| [../inipar#z0h_factor z0h_factor] || ini || R || 1.0 || Factor for calculating the roughness length for scalars. 
-|| [../inipar#zeta_max zeta_max] || ini || R || 20.0 || Upper limit of the stability parameter {{{zeta = z_mo/L}}}. 
-|| [../inipar#zeta_min zeta_min] || ini || R || -9990.0 || Lower limit of the stability parameter {{{zeta = z_mo/L}}}. 
+|| [../initialization_parameters#z0h_factor z0h_factor] || ini || R || 1.0 || Factor for calculating the roughness length for scalars. 
+|| [../initialization_parameters#zeta_max zeta_max] || ini || R || 20.0 || Upper limit of the stability parameter {{{zeta = z_mo/L}}}. 
+|| [../initialization_parameters#zeta_min zeta_min] || ini || R || -9990.0 || Lower limit of the stability parameter {{{zeta = z_mo/L}}}. 
 || [../lsmpar#zs zs] || lsm || R(4) || see description || Depths of the four soil layers (in m).