Ignore:
Timestamp:
Dec 9, 2020 1:08:08 PM (10 months ago)
Author:
gronemeier
Message:

add additional output paths to palm.iofiles and update configuration files accordingly

File:
1 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/SCRIPTS/.palm.config.idefix

    r3455 r4814  
    66#name of variable  value of variable (~ must not be used)
    77#-------------------------------------------------------------------------------
    8 %base_data          ~/palm/current_version/JOBS
    9 %base_directory     $HOME/palm/current_version
    10 %fast_io_catalog    /work/<replace_by_your_IDEFIX_username>
    11 %local_jobcatalog   $HOME/job_logfiles
    12 %output_path        /work/<replace_by_your_IDEFIX_username>/JOBS/$run_identifier
    13 %remote_jobcatalog  $HOME/job_logfiles
    14 %source_path        $HOME/palm/current_version/trunk/SOURCE
    15 %user_source_path   $base_directory/JOBS/$run_identifier/USER_CODE
    16 #
     8%base_directory      $HOME/palm/current_version
     9%base_data           ~/palm/current_version/JOBS
     10%source_path         $HOME/palm/current_version/trunk/SOURCE
     11%user_source_path    $base_directory/JOBS/$run_identifier/USER_CODE
     12%fast_io_catalog     /work/<replace_by_your_IDEFIX_username>
     13%restart_data_path    $fast_io_catalog
     14%output_data_path    /work/<replace_by_your_IDEFIX_username>/JOBS/
     15%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
     16%remote_jobcatalog   $base_data/$run_identifier/LOG_FILES
     17
    1718%local_ip            130.75.105.239
    1819%local_username      <replace_by_your_IDEFIX_username>
    1920%defaultqueue        workq
    2021%submit_command      /opt/pbspro/default/bin/qsub
    21 #
     22
    2223%compiler_name       mpif90
    2324%compiler_name_ser   ifort
     
    2829%hostfile            auto
    2930%module_commands     module load intel-compiler/2017.1.132 mvapich2/2.2/intel fftw/3.3.6-pl1/mvapich2-intel hdf5-parallel/1.10.0-patch1/intel netcdf4_hdf5parallel/4411c_443f/intel
    30 #
    3131%execute_command     mpirun  -machinefile hostfile  -n {{mpi_tasks}} palm
    32 #
    33 #
     32
    3433# BATCH-directives to be used for batch jobs.
    3534BD:#!/bin/bash
     
    4039BD:#PBS -j oe
    4140BD:#PBS -q{{queue}}
    42 #
     41
    4342# BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
    4443BDT:#!/bin/bash
     
    4948BDT:#PBS -j oe
    5049BDT:#PBS -q workq
    51 #
    52 #
     50
    5351#----------------------------------------------------------------------------
    54 # INPUT-commands, executed before running PALM - lines must start with "IC:" 
     52# INPUT-commands, executed before running PALM - lines must start with "IC:"
    5553#----------------------------------------------------------------------------
    5654IC:export MV2_ENABLE_AFFINITY=0
     
    5856IC:export MV2_CPU_BINDING_POLICY=scatter
    5957IC:ulimit -s unlimited
    60 #
     58
    6159#----------------------------------------------------------------------------
    6260# ERROR-commands - executed when program terminates abnormally
     
    6462EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
    6563EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
    66 #
     64
    6765#----------------------------------------------------------------------------
    6866# OUTPUT-commands - executed when program terminates normally
    6967#----------------------------------------------------------------------------
    70 #
    7168# Combine 1D- and 3D-profile output (these files are not usable for plotting)
    7269OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
    7370OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
    74 #
     71
    7572# Combine all particle information files
    7673OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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