Changeset 4814 for palm/trunk/SCRIPTS/.palm.config.idefix

Timestamp:

Dec 9, 2020 1:08:08 PM (3 years ago)

Author:

gronemeier

Message:

add additional output paths to palm.iofiles and update configuration files accordingly

File:

• palm/trunk/SCRIPTS/.palm.config.idefix (modified) (6 diffs)

palm/trunk/SCRIPTS/.palm.config.idefix

@@ -6 +6 @@
 #name of variable  value of variable (~ must not be used)
 #-------------------------------------------------------------------------------
-%base_data          ~/palm/current_version/JOBS
-%base_directory     $HOME/palm/current_version
-%fast_io_catalog    /work/<replace_by_your_IDEFIX_username>
-%local_jobcatalog   $HOME/job_logfiles
-%output_path        /work/<replace_by_your_IDEFIX_username>/JOBS/$run_identifier
-%remote_jobcatalog  $HOME/job_logfiles
-%source_path        $HOME/palm/current_version/trunk/SOURCE
-%user_source_path   $base_directory/JOBS/$run_identifier/USER_CODE
-#
+%base_directory      $HOME/palm/current_version
+%base_data           ~/palm/current_version/JOBS
+%source_path         $HOME/palm/current_version/trunk/SOURCE
+%user_source_path    $base_directory/JOBS/$run_identifier/USER_CODE
+%fast_io_catalog     /work/<replace_by_your_IDEFIX_username>
+%restart_data_path    $fast_io_catalog
+%output_data_path    /work/<replace_by_your_IDEFIX_username>/JOBS/
+%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
+%remote_jobcatalog   $base_data/$run_identifier/LOG_FILES
+
 %local_ip            130.75.105.239
 %local_username      <replace_by_your_IDEFIX_username>
 %defaultqueue        workq
 %submit_command      /opt/pbspro/default/bin/qsub
-#
+
 %compiler_name       mpif90
 %compiler_name_ser   ifort
@@ -28 +29 @@
 %hostfile            auto
 %module_commands     module load intel-compiler/2017.1.132 mvapich2/2.2/intel fftw/3.3.6-pl1/mvapich2-intel hdf5-parallel/1.10.0-patch1/intel netcdf4_hdf5parallel/4411c_443f/intel
-#
 %execute_command     mpirun  -machinefile hostfile  -n {{mpi_tasks}} palm
-#
-#
+
 # BATCH-directives to be used for batch jobs.
 BD:#!/bin/bash
@@ -40 +39 @@
 BD:#PBS -j oe
 BD:#PBS -q{{queue}}
-#
+
 # BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
 BDT:#!/bin/bash
@@ -49 +48 @@
 BDT:#PBS -j oe
 BDT:#PBS -q workq
-#
-#
+
 #----------------------------------------------------------------------------
-# INPUT-commands, executed before running PALM - lines must start with "IC:" 
+# INPUT-commands, executed before running PALM - lines must start with "IC:"
 #----------------------------------------------------------------------------
 IC:export MV2_ENABLE_AFFINITY=0
@@ -58 +56 @@
 IC:export MV2_CPU_BINDING_POLICY=scatter
 IC:ulimit -s unlimited
-#
+
 #----------------------------------------------------------------------------
 # ERROR-commands - executed when program terminates abnormally
@@ -64 +62 @@
 EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
 EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
-#
+
 #----------------------------------------------------------------------------
 # OUTPUT-commands - executed when program terminates normally
 #----------------------------------------------------------------------------
-#
 # Combine 1D- and 3D-profile output (these files are not usable for plotting)
 OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
 OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
-#
+
 # Combine all particle information files
 OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO