Ignore:
Timestamp:
Dec 9, 2020 1:08:08 PM (11 months ago)
Author:
gronemeier
Message:

add additional output paths to palm.iofiles and update configuration files accordingly

File:
1 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/SCRIPTS/.palm.config.atosg_debug

    r4798 r4814  
    33#name of variable  value of variable (~ must not be used)
    44#----------------------------------------------------------------------------
     5%base_directory      $HOME/palm/current_version
    56%base_data           $HOME/palm/current_version/JOBS
    6 %base_directory      $HOME/palm/current_version
    77%source_path         $HOME/palm/current_version/trunk/SOURCE
    8 %user_source_path    $base_directory/JOBS/$run_identifier/USER_CODE
     8%user_source_path    $base_data/$run_identifier/USER_CODE
    99%fast_io_catalog     /scratch/usr/<replace_by_your_HLRN_username>
    10 %local_jobcatalog    /home/<replace_by_your_local_username>/job_logfiles
    11 %remote_jobcatalog   /home/<replace_by_your_HLRN_username>/job_logfiles
    12 #
     10%restart_data_path   $fast_io_catalog
     11%output_data_path    $base_data
     12%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
     13%remote_jobcatalog   $base_data/$run_identifier/LOG_FILES
     14
    1315%local_ip            <replace by IP of your local computer>
    1416%local_username      <replace_by_your_local_username>
     
    1820%ssh_key             id_rsa_hlrn
    1921%defaultqueue        standard96:test
     22%project_account     <replace_by_your_default_HLRN_project_account>
    2023%submit_command      /cm/shared/batch/bin/sbatch
    2124
     
    3336# BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
    3437BD:#!/bin/bash
     38#BD:#SBATCH --dependency=afterany:{{previous_job}}
     39BD:#SBATCH -A {{project_account}}
    3540BD:#SBATCH --job-name={{run_id}}
    3641BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
     
    4146BD:#SBATCH --output={{job_protocol_file}}
    4247BD:#SBATCH --error={{job_protocol_file}}
     48#BD:#SBATCH --mail-type=ALL
     49#BD:#SBATCH --mail-user=<replace_by_your_email_address>
    4350
    44 #
    4551# BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
    4652BDT:#!/bin/bash
     53BDT:#SBATCH -A {{project_account}}
    4754BDT:#SBATCH --job-name=job_transfer
    4855BDT:#SBATCH --time=00:30:00
     
    7582# OUTPUT-commands - executed when program terminates normally
    7683#----------------------------------------------------------------------------
    77 
    7884# Combine 1D- and 3D-profile output (these files are not usable for plotting)
    79 OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
    80 OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
     85#OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
     86#OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
    8187
    8288# Combine all particle information files
    83 OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
     89#OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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