Changeset 4814 for palm/trunk/SCRIPTS/.palm.config.atosg

Timestamp:

Dec 9, 2020 1:08:08 PM (3 years ago)

Author:

gronemeier

Message:

add additional output paths to palm.iofiles and update configuration files accordingly

File:

• palm/trunk/SCRIPTS/.palm.config.atosg (modified) (5 diffs)

palm/trunk/SCRIPTS/.palm.config.atosg

@@ -3 +3 @@
 #name of variable  value of variable (~ must not be used)
 #----------------------------------------------------------------------------
+%base_directory      $HOME/palm/current_version
 %base_data           $HOME/palm/current_version/JOBS
-%base_directory      $HOME/palm/current_version
 %source_path         $HOME/palm/current_version/trunk/SOURCE
-%user_source_path    $base_directory/JOBS/$run_identifier/USER_CODE
+%user_source_path    $base_data/$run_identifier/USER_CODE
 %fast_io_catalog     /scratch/usr/<replace_by_your_HLRN_username>
-%local_jobcatalog    /home/<replace_by_your_local_username>/job_logfiles
-%remote_jobcatalog   /home/<replace_by_your_HLRN_username>/job_logfiles
-#
+%restart_data_path   $fast_io_catalog
+%output_data_path    $base_data
+%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
+%remote_jobcatalog   $base_data/$run_identifier/LOG_FILES
+
 %local_ip            <replace by IP of your local computer>
 %local_username      <replace_by_your_local_username>
@@ -18 +20 @@
 %ssh_key             id_rsa_hlrn
 %defaultqueue        standard96:test
+%project_account     <replace_by_your_default_HLRN_project_account>
 %submit_command      /cm/shared/batch/bin/sbatch
 
@@ -33 +36 @@
 # BATCH-directives to be used for batch jobs. If $-characters are required, hide them with 3 backslashes
 BD:#!/bin/bash
+#BD:#SBATCH --dependency=afterany:{{previous_job}}
+BD:#SBATCH -A {{project_account}}
 BD:#SBATCH --job-name={{run_id}}
 BD:#SBATCH --time={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
@@ -41 +46 @@
 BD:#SBATCH --output={{job_protocol_file}}
 BD:#SBATCH --error={{job_protocol_file}}
+#BD:#SBATCH --mail-type=ALL
+#BD:#SBATCH --mail-user=<replace_by_your_email_address>
 
-#
 # BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
 BDT:#!/bin/bash
+BDT:#SBATCH -A {{project_account}}
 BDT:#SBATCH --job-name=job_transfer
 BDT:#SBATCH --time=00:30:00
@@ -75 +82 @@
 # OUTPUT-commands - executed when program terminates normally
 #----------------------------------------------------------------------------
-
 # Combine 1D- and 3D-profile output (these files are not usable for plotting)
-OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
-OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
+#OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
+#OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
 
 # Combine all particle information files
-OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
+#OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO