Changeset 4454

Timestamp:

Mar 11, 2020 11:47:22 AM (5 years ago)

Author:

forkel

Message:

Updated Readme_KPP4PALM.odt and comments in run_kpp4palm.sh, set dedault in kpp4palm.sh to phstatp

Location:

palm/trunk/UTIL/chemistry/gasphase_preproc

Files:

• Readme_KPP4PALM.odt (modified) (previous)
• kpp4palm/bin/kpp4palm.sh (modified) (2 diffs)
• run_kpp4palm.sh (modified) (5 diffs)

palm/trunk/UTIL/chemistry/gasphase_preproc/kpp4palm/bin/kpp4palm.sh

@@ -40 +40 @@
 # -----------------
 # $Id$ 
+# Changed default mechanism from smog to phstatp
+# 
+# 
+# 4451 2020-03-10 07:25:32Z raasch
 # rename kpp4palm.ksh to kpp4palm.sh, convert to bash
 # 
@@ -104 +108 @@
 # Default
 
-MECH=smog
+MECH=phstatp
 OUTDIR=`pwd`/../../../SOURCE
 OUTFILE=chem_gasphase_mod
-DEFDIR=`pwd`/mechanisms/def_smog
+DEFDIR=`pwd`/mechanisms/def_phastatp
 PREFIX=chem_gasphase_mod
 MODE="scalar"

palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.sh

@@ -29 +29 @@
 # -----------------
 # $Id$ 
+# updated some comments
+# 
+# 
+# 4451 2020-03-10 07:25:32Z raasch
 # rename run_kpp4palm.ksh to run_kpp4palm.sh, convert to bash
 # default mechanism changed to phstatp
@@ -83 +87 @@
 cd ..
 
-# run kpp4palm/bin/kpp4palm.sh with the following Setup
-#    -d   DEFDIR=$OPTARG;;          # directory of definition files 
-#                                     (passed as `pwd`/mechanisms/def_$MECH)
-#    -m   MECH="smog";;             # chemical mechanism 
-#                                     (smog, simple, simplep, cbm4, phstat, passive, passive1)
+# run kpp4palm/bin/kpp4palm.sh with the following arguments
+#
+#    -m   MECH="phstatp";;          # chemical mechanism 
+#                                     (phstat, phstatp, smog, simple,cbm4, etc, see directory mechanisms)
 #    -i   DE_INDEX=2;;              # deindexing method (0,1,2,3; 0=no deindexing)
 #    -v   MODE="-v";;               # vector mode on (not working completely yet)
@@ -95 +98 @@
 #                                   # Use "YES" with care as the existing sample file is overwritten
 #
-##   Further options (not passed as changing does not make sense to change these)
+##   Further options (currently not passed as changing does not make sense to change these)
 ##    -f   DE_INDEX_FAST="YES";;     # if set, fast deindexing
 ##    -o   OUTDIR=$OPTARG;;          # Output directory of Generated Code
@@ -104 +107 @@
  
 echo $PATH
-# use phstatp (photo-stationary) mechnism as default
+# use phstatp (photo-stationary) mechanism as default
 MECH=phstatp
 DEIN=2
@@ -131 +134 @@
 echo Now do kpp4palm for $MECH
 
-# kpp4palm.sh -d `pwd`/mechanisms/def_$MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN
 kpp4palm.sh -m $MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN