1 | #!/bin/bash |
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2 | # |
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3 | # run_kpp4palm - script for running gasphase preprocessor |
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4 | |
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5 | #------------------------------------------------------------------------------# |
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6 | # This file is part of the PALM model system. |
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7 | # |
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8 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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9 | # of the GNU General Public License as published by the Free Software Foundation, |
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10 | # either version 3 of the License, or (at your option) any later version. |
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11 | # |
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12 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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13 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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14 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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15 | # |
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16 | # You should have received a copy of the GNU General Public License along with |
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17 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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18 | # |
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19 | # Copyright 2017-2018 Klaus Ketelsen and MPI-CH (April 2007) |
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20 | # Copyright 2017-2018 Karlsruhe Institute of Technology |
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21 | # Copyright 2017-2018 Leibniz Universitaet Hannover |
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22 | #------------------------------------------------------------------------------# |
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23 | # |
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24 | # Current revisions: |
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25 | # ------------------ |
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26 | # |
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27 | # |
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28 | # Former revisions: |
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29 | # ----------------- |
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30 | # $Id: run_kpp4palm.sh 4451 2020-03-10 07:25:32Z raasch $ |
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31 | # rename run_kpp4palm.ksh to run_kpp4palm.sh, convert to bash |
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32 | # default mechanism changed to phstatp |
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33 | # |
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34 | # 3487 2018-11-05 07:18:02Z maronga |
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35 | # Some correctetion of comments |
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36 | # |
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37 | # 3458 2018-10-30 14:51:23Z kanani |
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38 | # passed $MECH insted of $DEFDIR to kpp4palm.ksh forkel 25. Sept. 2018 |
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39 | # re-activaded choice of deindexing method and vector mode forkel June 2018 |
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40 | # |
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41 | # 2718 2018-01-02 08:49:38Z maronga |
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42 | # Initial revision |
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43 | # |
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44 | # |
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45 | # |
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46 | # |
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47 | # Other notes: |
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48 | # ------------ |
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49 | # Small adaptations (added MECH as argument, re-introduced relative path, |
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50 | # adaption to changing kp4 to kpp4palm) |
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51 | # filename changed from run_kp4.ksh to run_kpp4palm.ksh |
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52 | # |
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53 | # Nov. 2016: Initial Version of KPP chemistry by Klaus Ketelsen |
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54 | # |
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55 | |
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56 | echo "\$1 = " $1 |
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57 | |
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58 | if [[ $1 == "clean" ]] |
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59 | then |
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60 | cd kpp |
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61 | make distclean |
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62 | cd .. |
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63 | |
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64 | cd kpp4palm |
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65 | make distclean |
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66 | cd .. |
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67 | exit |
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68 | fi |
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69 | |
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70 | export PATH=$PATH:`pwd`/kpp4palm/bin |
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71 | |
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72 | # build kpp |
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73 | |
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74 | cp mechanisms/UserRateLaws.f90 kpp/util |
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75 | cd kpp |
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76 | make |
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77 | cd .. |
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78 | |
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79 | # build kpp4palm.exe |
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80 | |
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81 | cd kpp4palm |
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82 | make install |
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83 | cd .. |
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84 | |
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85 | # run kpp4palm/bin/kpp4palm.sh with the following Setup |
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86 | # -d DEFDIR=$OPTARG;; # directory of definition files |
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87 | # (passed as `pwd`/mechanisms/def_$MECH) |
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88 | # -m MECH="smog";; # chemical mechanism |
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89 | # (smog, simple, simplep, cbm4, phstat, passive, passive1) |
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90 | # -i DE_INDEX=2;; # deindexing method (0,1,2,3; 0=no deindexing) |
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91 | # -v MODE="-v";; # vector mode on (not working completely yet) |
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92 | # -l VLEN=$OPTARG;; # Set vector length (not working completely yet) |
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93 | # -k KEEP="NO";; # if "yes" keep Working directory |
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94 | # -u UPDT="NO";; # if "yes" update the existing f90 code in the def_MECH directory |
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95 | # # Use "YES" with care as the existing sample file is overwritten |
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96 | # |
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97 | ## Further options (not passed as changing does not make sense to change these) |
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98 | ## -f DE_INDEX_FAST="YES";; # if set, fast deindexing |
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99 | ## -o OUTDIR=$OPTARG;; # Output directory of Generated Code |
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100 | ## (`pwd`/../../../SOURCE) |
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101 | ## -p PREFIX=$OPTARG;; # Name Prefix (chem_gasphase_mod) |
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102 | ## -s KPP_SOLVER=$OPTARG;; # Name Prefix (rosenbrock) |
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103 | |
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104 | |
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105 | echo $PATH |
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106 | # use phstatp (photo-stationary) mechnism as default |
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107 | MECH=phstatp |
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108 | DEIN=2 |
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109 | |
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110 | while getopts m:i:kuvl: opt # get options |
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111 | do case $opt in |
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112 | m) MECH=$OPTARG;; # mechanism name as part of mechanisms/def_[mechanism_name] |
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113 | |
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114 | i) DEIN=$OPTARG;; # deindexing method (0,1,2,3; 0=no deindexing) |
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115 | |
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116 | k) KEEP="-k";; # keep Working directory |
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117 | |
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118 | u) UPDT="-u";; # update sample output file |
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119 | |
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120 | v) MODE="-v";; # vector mode on |
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121 | |
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122 | c) COPY="-c";; # copy output to def_MECH |
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123 | |
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124 | l) VLEN=$OPTARG;; # Set vector length |
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125 | |
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126 | \?) print ${0##*/} "unknown option:" $OPTARG |
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127 | print "USAGE: ${0##*/} [ -m mechanism_name] [ -i n (n=0,1,2,3)] [ -k] [ -u] [ -v] [ -l N (N=vector length)]" |
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128 | exit 1;; |
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129 | esac |
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130 | done |
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131 | echo Now do kpp4palm for $MECH |
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132 | |
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133 | # kpp4palm.sh -d `pwd`/mechanisms/def_$MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN |
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134 | kpp4palm.sh -m $MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN |
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