Changeset 1547

Timestamp:

Jan 29, 2015 3:09:12 PM (10 years ago)

Author:

witha

Message:

adjustments for ForWind? computing cluster (lcflow)

Location:

palm/trunk/SCRIPTS

Files:

• .mrun.config.forwind (deleted)
• .mrun.config.forwind_flow (added)
• .mrun.config.forwind_hlrnIII (modified) (1 diff)
• mbuild (modified) (2 diffs)
• mrun (modified) (3 diffs)
• subjob (modified) (6 diffs)

palm/trunk/SCRIPTS/.mrun.config.forwind_hlrnIII

@@ -165 +165 @@
 CPU_MEASURES      out:loc:tr   d3#     $base_data/$fname/MONITORING  _cpu
 CPU_MEASURES      out:loc:tra  d3f     $base_data/$fname/MONITORING  _cpu
+TURBINE_PARAMETERS01   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters01
+TURBINE_PARAMETERS02   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters02
+TURBINE_PARAMETERS03   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters03
+TURBINE_PARAMETERS04   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters04
+TURBINE_PARAMETERS05   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters05
+TURBINE_PARAMETERS06   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters06
+TURBINE_PARAMETERS07   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters07
+TURBINE_PARAMETERS08   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters08
+TURBINE_PARAMETERS09   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters09
+TURBINE_PARAMETERS10   out:loc:tr    d3#:d3f   $base_data/$fname/MONITORING  _turbine_parameters10
 #
 DATA_1D_PR_NETCDF      out:loc    pr#       $output_data/$fname/OUTPUT  _pr      nc

palm/trunk/SCRIPTS/mbuild

@@ -22 +22 @@
 # Current revisions:
 # ------------------
-# 
+# adjustments for ForWind computing cluster (lcflow)
 # 
 # Former revisions:
@@ -512 +512 @@
         (lccrayb)        remote_address=130.73.233.1;;
         (lccrayh)        remote_address=130.75.4.1;;
-        (lcflow)         remote_address="flow.hpc.uni-oldenburg.de";;
+        (lcflow)         remote_address="flow02.hpc.uni-oldenburg.de";;
         (lckordi)        remote_adress=210.219.61.8;;
         (lcmuk)          remote_address=130.75.105.2;;

palm/trunk/SCRIPTS/mrun

@@ -22 +22 @@
 # Current revisions:
 # ------------------
-# 
+# adjustments for ForWind computing cluster (lcflow)
 # 
 # Former revisions:
@@ -3508 +3508 @@
                 elif [[ $host = lcflow ]]
                 then
-                   mpirun -bootstrap sge -np $ii  -env I_MPI_FABRICS shm:ofa a.out  < runfile_atmos  $ROPTS
+                   mpirun -np $ii a.out  < runfile_atmos  $ROPTS
                 elif [[ $host = lcsb ]]
                 then
@@ -4810 +4810 @@
 
        # lcflow ALSO REQUIRES TO PROVIDE PATH FOR THE PALM-SCRIPTS
-    if [[ $host = lcflow  ||  $localhost = lcflow ]]
-    then
+#    if [[ $host = lcflow  ||  $localhost = lcflow ]]
+#    then
        echo  "export PALM_BIN=$PALM_BIN" | sed -e 's:'$HOME':$HOME:'   >>  $jobfile
        echo  "export PATH=\$PATH:\$PALM_BIN"              >>  $jobfile
-    fi
+#    fi
 
        # CALL MRUN WITHIN THE JOB (SETTING QUEUE IS A WORKAROUND FOR ibmkisti)

palm/trunk/SCRIPTS/subjob

@@ -23 +23 @@
 # Current revisions:
 # ------------------
-# 
+# adjustments for ForWind computing cluster (lcflow)
 # 
 # Former revisions:
@@ -364 +364 @@
         (lccrayh) queue=mpp1testq; remote_address=130.75.4.1; submcom=/opt/moab/default/bin/msub;;
         (lccrayf) queue=small; remote_address=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
-        (lcflow)  remote_address=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
+        (lcflow)  remote_address=10.140.1.72; submcom=qsub;;
         (lckyoto) remote_address=133.3.51.11; submcom=/thin/local/bin/qsub;;
         (lck)     remote_address=165.132.26.61; submcom=/usr/torque/bin/qsub;;
@@ -422 +422 @@
                  esac;;
         (lcflow) case  $ndq  in
-                     (cfd_lom_long.q|cfd_him_long.q|cfd_lom_serl.q|cfd_lom_shrt.q|cfd_him_shrt.q)  error=false;;
+                     (cfd_lom_long.q|cfd_him_long.q|cfd_lom_serl.q|cfd_lom_shrt.q|cfd_him_shrt.q|cfd_ivy_shrt.q)  error=false;;
                      (*)                                     error=true;;
                  esac;;
@@ -844 +844 @@
  elif [[ $remote_host = lcflow ]]
  then
-    if [ $memory -gt 1800 ]; then
-      use_himem=""
-    else
-      use_himem="#"
-    fi
     if [[ $numprocs != 0 ]]
     then
-      pe_set="#$ -pe impi41 $numprocs"
-    else
-      pe_set="#$ -pe impi41 1"
+      pe_set="#$ -pe impi $numprocs"
+    else
+      pe_set="#$ -pe impi 1"
     fi
     if [[ $queue = default ]]
@@ -874 +869 @@
 $pe_set
 #$ -R y
-${use_himem}#$ -l highmem=true
 #$ -l h_fsize=${disc_space}G
 $queue_set
@@ -1335 +1329 @@
           echo "SGEPREFIX -l h_rt=01:00:00"                              >>  $job_to_send
           echo "SGEPREFIX -l h_vmem=500M"                                >>  $job_to_send
-          echo "SGEPREFIX -l excl_flow=false"                            >>  $job_to_send
           echo "SGEPREFIX -j y"                                          >>  $job_to_send
           echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier"  >>  $job_to_send