Changeset 132 for palm/trunk/DOC/misc/Tsubame.html

Timestamp:

Nov 20, 2007 9:46:11 AM (17 years ago)

Author:

letzel

Message:

Vertical profiles now based on nzb_s_inner; they are divided by
ngp_2dh_s_inner (scalars, procucts of scalars and velocity components) and
ngp_2dh (staggered velocity components and their products), respectively.

Allow new case bc_uv_t = 'dirichlet_0' for channel flow.

File:

• palm/trunk/DOC/misc/Tsubame.html (modified) (3 diffs)

palm/trunk/DOC/misc/Tsubame.html

@@ -21 +21 @@
 Tsubame is located behind a firewall, the usual&nbsp;address  <a class="fixed" href="svn://130.75.105.45" target="_blank">svn://130.75.105.45</a>&nbsp;is unreachable from Tsubame. Instead, please login to media-o
 and use&nbsp;<a class="fixed" href="svn://p9c.cc.titech.ac.jp:36900" target="_blank">svn://p9c.cc.titech.ac.jp:36900</a>.
-This port works in both directions, i.e. for <code>svn update</code> as well as <code>svn commit</code> commands.</p><h4>Combine plot fields</h4><p>Please add the following line to the output command (<code>OC:</code>) section of your <code>.mrun.config</code> to ensure correct output of 2D and 3D data for PALM runs on more than one CPU&nbsp;:</p><code>OC:[[ \$( echo \$localhost | cut -c1-3 ) = lct ]]&nbsp; &amp;&amp;&nbsp; combine_plot_fields.x</code><br><h4>Batch system<br></h4><p>The implementation of the <span style="font-weight: bold;">n1ge</span> command on
+This port works in both directions, i.e. for <code>svn update</code> as well as <code>svn commit</code> commands.</p><h4>Batch system<br></h4><p>The implementation of the <span style="font-weight: bold;">n1ge</span> command on
 Tsubame requires modifications to&nbsp;<span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">subjob</span> for PALM to
 run on Tsubame. Since <span style="font-weight: bold;">mrun</span>
@@ -42 +42 @@
 not always be the best choice. For code development, debugging or short
 test runs the value "novice" for both options may be suitable.
-Production runs should use the respective production queues (see <a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a> for details).&nbsp;</p><p>The
+Production runs should use the respective production queues (see <a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a> for details). In the past the queueing system on Tsubame has undergone several changes, so this information may change.</p><p>The
 computer center advised us that due to restrictions of the batch system
 the value "novice" should not be mixed with the other queues. Please
@@ -53 +53 @@
 option <code><span style="font-family: Courier New,Courier,monospace;">-m</span></code>
 contains the memory demand for the main job <span style="font-weight: bold;">in MB</span> which will be
-automatically converted into GB for the <span style="font-weight: bold;">n1ge</span> command.</p><p>Finally, PALM batch jobs on Tsubame require the&nbsp;<span style="font-weight: bold;">mrun</span> option <code>-b</code>.</p><h4>NetCDF</h4><p>In order to use NetCDF commands like <code>ncdump</code>&nbsp;and the graphical NetCDF tools <a href="http://www.ncl.ucar.edu" target="_top">NCL</a> and <a href="http://meteora.ucsd.edu/%7Epierce/ncview_home_page.html" target="_top">Ncview</a>, please add the following lines to  <code><span style="font-family: Courier New,Courier,monospace;">~/.profile</span></code> (for ksh users) or <code>~/.bashrc</code> (for bash users):</p><p><code># NetCDF<br>export PATH=$PATH:~mkanda/netcdf-3.6.2/bin:~mkanda/netcdf-3.6.2/include<br><br></code><code># NCL<br>export NCARG_ROOT=~mkanda/ncl<br>PATH=~mkanda/ncl/bin:$PATH<br><br># Ncview<br>export PATH=$PATH:~mkanda/ncview/bin<br>export XAPPLRESDIR=~mkanda/.app-defaults</code></p><i><br>Last
+automatically converted into GB for the <span style="font-weight: bold;">n1ge</span> command.</p><p>Finally, PALM batch jobs on Tsubame require the&nbsp;<span style="font-weight: bold;">mrun</span> option <code>-b</code>.</p><h4>NetCDF</h4><p>In order to use <a href="http://www.unidata.ucar.edu/software/netcdf" target="_top">NetCDF</a> commands like <code>ncdump</code>&nbsp;and the graphical NetCDF tools <a href="http://www.ncl.ucar.edu" target="_top">NCL</a>,&nbsp;<a href="http://meteora.ucsd.edu/%7Epierce/ncview_home_page.html" target="_top">Ncview</a> and <a href="http://ferret.pmel.noaa.gov/Ferret" target="_top">Ferret</a>, please add the following lines to  <code><span style="font-family: Courier New,Courier,monospace;">~/.profile</span></code> (for ksh users) or <code>~/.bashrc</code> (for bash users):</p><p><code># NetCDF<br>export PATH=$PATH:~mkanda/netcdf-3.6.2/bin:~mkanda/netcdf-3.6.2/include<br><br></code><code># NCL<br>export NCARG_ROOT=~mkanda/ncl<br>PATH=~mkanda/ncl/bin:$PATH<br><br># Ncview<br>export PATH=$PATH:~mkanda/ncview/bin<br>export XAPPLRESDIR=~mkanda/.app-defaults</code></p><p><code># Ferret<br>export FER_DIR=~mkanda/ferret<br>export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$FER_DIR/lib<br>export PATH=$PATH:$FER_DIR:$FER_DIR/bin<br>export FER_DSETS=$FER_DIR<br>export FER_WEB_BROWSER=firefox<br>export FER_EXTERNAL_FUNCTIONS="$FER_DIR/lib"<br>export FER_GO=". $FER_DIR/go $FER_DIR/examples $FER_DIR/contrib"<br>export FER_DATA="."<br>export FER_DESCR="."<br>export FER_GRIDS=". $FER_DSETS/grids"<br>export TMAP="$FER_DIR/fmt"<br>export PLOTFONTS="$FER_DIR/ppl/fonts"<br>export SPECTRA="$FER_DIR/ppl"&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; # for old ferret versions<br>export FER_PALETTE=". $FER_DIR/ppl"&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; # palette search list<br></code></p><i><br>Last
 change:</i>&nbsp; $Id$</body></html>