Changeset 132 for palm/trunk/DOC/misc


Ignore:
Timestamp:
Nov 20, 2007 9:46:11 AM (14 years ago)
Author:
letzel
Message:

Vertical profiles now based on nzb_s_inner; they are divided by
ngp_2dh_s_inner (scalars, procucts of scalars and velocity components) and
ngp_2dh (staggered velocity components and their products), respectively.

Allow new case bc_uv_t = 'dirichlet_0' for channel flow.

File:
1 edited

Legend:

Unmodified
Added
Removed
  • palm/trunk/DOC/misc/Tsubame.html

    r130 r132  
    2121Tsubame is located behind a firewall, the usual&nbsp;address  <a class="fixed" href="svn://130.75.105.45" target="_blank">svn://130.75.105.45</a>&nbsp;is unreachable from Tsubame. Instead, please login to media-o
    2222and use&nbsp;<a class="fixed" href="svn://p9c.cc.titech.ac.jp:36900" target="_blank">svn://p9c.cc.titech.ac.jp:36900</a>.
    23 This port works in both directions, i.e. for <code>svn update</code> as well as <code>svn commit</code> commands.</p><h4>Combine plot fields</h4><p>Please add the following line to the output command (<code>OC:</code>) section of your <code>.mrun.config</code> to ensure correct output of 2D and 3D data for PALM runs on more than one CPU&nbsp;:</p><code>OC:[[ \$( echo \$localhost | cut -c1-3 ) = lct ]]&nbsp; &amp;&amp;&nbsp; combine_plot_fields.x</code><br><h4>Batch system<br></h4><p>The implementation of the <span style="font-weight: bold;">n1ge</span> command on
     23This port works in both directions, i.e. for <code>svn update</code> as well as <code>svn commit</code> commands.</p><h4>Batch system<br></h4><p>The implementation of the <span style="font-weight: bold;">n1ge</span> command on
    2424Tsubame requires modifications to&nbsp;<span style="font-weight: bold;">mrun</span> and <span style="font-weight: bold;">subjob</span> for PALM to
    2525run on Tsubame. Since <span style="font-weight: bold;">mrun</span>
     
    4242not always be the best choice. For code development, debugging or short
    4343test runs the value "novice" for both options may be suitable.
    44 Production runs should use the respective production queues (see <a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a> for details).&nbsp;</p><p>The
     44Production runs should use the respective production queues (see <a href="http://www.gsic.titech.ac.jp/%7Eccwww/tgc/q_e.html">http://www.gsic.titech.ac.jp/~ccwww/tgc/q_e.html</a> for details). In the past the queueing system on Tsubame has undergone several changes, so this information may change.</p><p>The
    4545computer center advised us that due to restrictions of the batch system
    4646the value "novice" should not be mixed with the other queues. Please
     
    5353option <code><span style="font-family: Courier New,Courier,monospace;">-m</span></code>
    5454contains the memory demand for the main job <span style="font-weight: bold;">in MB</span> which will be
    55 automatically converted into GB for the <span style="font-weight: bold;">n1ge</span> command.</p><p>Finally, PALM batch jobs on Tsubame require the&nbsp;<span style="font-weight: bold;">mrun</span> option <code>-b</code>.</p><h4>NetCDF</h4><p>In order to use NetCDF commands like <code>ncdump</code>&nbsp;and the graphical NetCDF tools <a href="http://www.ncl.ucar.edu" target="_top">NCL</a> and <a href="http://meteora.ucsd.edu/%7Epierce/ncview_home_page.html" target="_top">Ncview</a>, please add the following lines to  <code><span style="font-family: Courier New,Courier,monospace;">~/.profile</span></code> (for ksh users) or <code>~/.bashrc</code> (for bash users):</p><p><code># NetCDF<br>export PATH=$PATH:~mkanda/netcdf-3.6.2/bin:~mkanda/netcdf-3.6.2/include<br><br></code><code># NCL<br>export NCARG_ROOT=~mkanda/ncl<br>PATH=~mkanda/ncl/bin:$PATH<br><br># Ncview<br>export PATH=$PATH:~mkanda/ncview/bin<br>export XAPPLRESDIR=~mkanda/.app-defaults</code></p><i><br>Last
     55automatically converted into GB for the <span style="font-weight: bold;">n1ge</span> command.</p><p>Finally, PALM batch jobs on Tsubame require the&nbsp;<span style="font-weight: bold;">mrun</span> option <code>-b</code>.</p><h4>NetCDF</h4><p>In order to use <a href="http://www.unidata.ucar.edu/software/netcdf" target="_top">NetCDF</a> commands like <code>ncdump</code>&nbsp;and the graphical NetCDF tools <a href="http://www.ncl.ucar.edu" target="_top">NCL</a>,&nbsp;<a href="http://meteora.ucsd.edu/%7Epierce/ncview_home_page.html" target="_top">Ncview</a> and <a href="http://ferret.pmel.noaa.gov/Ferret" target="_top">Ferret</a>, please add the following lines to  <code><span style="font-family: Courier New,Courier,monospace;">~/.profile</span></code> (for ksh users) or <code>~/.bashrc</code> (for bash users):</p><p><code># NetCDF<br>export PATH=$PATH:~mkanda/netcdf-3.6.2/bin:~mkanda/netcdf-3.6.2/include<br><br></code><code># NCL<br>export NCARG_ROOT=~mkanda/ncl<br>PATH=~mkanda/ncl/bin:$PATH<br><br># Ncview<br>export PATH=$PATH:~mkanda/ncview/bin<br>export XAPPLRESDIR=~mkanda/.app-defaults</code></p><p><code># Ferret<br>export FER_DIR=~mkanda/ferret<br>export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$FER_DIR/lib<br>export PATH=$PATH:$FER_DIR:$FER_DIR/bin<br>export FER_DSETS=$FER_DIR<br>export FER_WEB_BROWSER=firefox<br>export FER_EXTERNAL_FUNCTIONS="$FER_DIR/lib"<br>export FER_GO=". $FER_DIR/go $FER_DIR/examples $FER_DIR/contrib"<br>export FER_DATA="."<br>export FER_DESCR="."<br>export FER_GRIDS=". $FER_DSETS/grids"<br>export TMAP="$FER_DIR/fmt"<br>export PLOTFONTS="$FER_DIR/ppl/fonts"<br>export SPECTRA="$FER_DIR/ppl"&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; # for old ferret versions<br>export FER_PALETTE=". $FER_DIR/ppl"&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; # palette search list<br></code></p><i><br>Last
    5656change:</i>&nbsp; $Id$</body></html>
Note: See TracChangeset for help on using the changeset viewer.