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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 549

Last change on this file since 549 was 494, checked in by raasch, 15 years ago
last commit documented; configuration example file for netcdf4 added
Property svn:keywords set to `Id`
File size: 30.0 KB

Rev	Line
[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
	4	! Actual revisions:
	5	! -----------------
[494]	6	!
[226]	7	!
	8	! Former revisions:
	9	! -----------------
	10	! $Id: combine_plot_fields.f90 494 2010-03-01 12:23:32Z heinze $
	11	!
[494]	12	! 493 2010-03-01 08:30:24Z raasch
	13	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	14	! cpu measurements included
	15	!
[226]	16	! 210 2008-11-06 08:54:02Z raasch
[210]	17	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	18	! all three dimensions), because output of a subset of the data
	19	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	20	! with the INTEL compiler.
[191]	21	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	22	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	23	! Bugfix: three misplaced #endif directives
[1]	24	!
[139]	25	! 114 2007-10-10 00:03:15Z raasch
	26	! Bugfix: model_string needed a default value
	27	!
[114]	28	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	29	! contain modus any longer
	30	!
[1]	31	! 18/01/06 Output of time-averaged data
	32	!
	33	! 25/05/05 Errors removed
	34	!
	35	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	36	! file exists
	37	!
	38	! 31/10/01 All comments and messages translated into English
	39	!
	40	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	41	! Ursprungsversion vom 28/07/97
	42	!
	43	!
	44	! Description:
	45	! ------------
	46	! This routine combines data of the PALM-subdomains into one file. In PALM
	47	! every processor element opens its own file and writes 2D- or 3D-binary-data
	48	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	49	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	50	! to be put into single files, which is done by this routine.
	51	! Output format is NetCDF. Additionally, a data are output in a binary format
	52	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	53	!------------------------------------------------------------------------------!
	54
	55	#if defined( __netcdf )
	56	USE netcdf
	57	#endif
	58
	59	IMPLICIT NONE
	60
	61	!
	62	!-- Local variables
[108]	63	CHARACTER (LEN=2) :: modus, model_string
	64	CHARACTER (LEN=4) :: id_string
[1]	65	CHARACTER (LEN=10) :: dimname, var_name
	66	CHARACTER (LEN=40) :: filename
	67
	68	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	69
	70	INTEGER, PARAMETER :: spk = SELECTED_REAL_KIND( 6 )
	71
	72	INTEGER :: av, danz, i, id, &
[210]	73	j, k, model, models, nc_stat, nxa, nxag, nxe, nxeg, nya, &
[1]	74	nyag, nye, nyeg, nza, nzag, nze, nzeg, pos, time_step, xa, xe, &
[210]	75	xxa, xxe, ya, ye, yya, yye, za, ze, zza, zze
[1]	76
[493]	77	#if defined( __lc ) \|\| defined( __decalpha )
	78	INTEGER(8) :: count, count_rate
	79	#elif defined( __nec )
	80	INTEGER :: count, count_rate
	81	#elif defined( __ibm )
	82	INTEGER(8) :: IRTC
	83	#endif
	84
[108]	85	INTEGER, DIMENSION(0:1) :: current_level, current_var, fanz, id_set, &
	86	id_var_time, num_var
[1]	87
	88	INTEGER, DIMENSION(4) :: id_dims_loc
	89
	90	INTEGER, DIMENSION(0:1,4) :: id_dims
	91
	92	INTEGER, DIMENSION(0:1,1000) :: id_var, levels
	93
	94	LOGICAL :: avs_output, compressed, found, iso2d_output, netcdf_output, &
[493]	95	netcdf_parallel, netcdf_0, netcdf_1
[1]	96
[493]	97	REAL :: cpu_start_time, cpu_end_time, dx, simulated_time
[1]	98	REAL, DIMENSION(:), ALLOCATABLE :: eta, ho, hu
[191]	99	REAL, DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
	100	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	101
	102	PRINT*, ''
[114]	103	PRINT*, ''
[108]	104	PRINT, ' combine_plot_fields *'
[114]	105
	106	!
	107	!-- Find out if a coupled run has been carried out
[108]	108	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
	109	IF ( found ) THEN
	110	models = 2
	111	PRINT*, ' coupled run'
	112	ELSE
	113	models = 1
	114	PRINT*, ' uncoupled run'
	115	ENDIF
[114]	116
	117	!
	118	!-- Do everything for each model
[108]	119	DO model = 1, models
[114]	120	!
	121	!-- Set the model string used to identify the filenames
	122	model_string = ''
[108]	123	IF ( models == 2 ) THEN
	124	PRINT*, ''
	125	PRINT, ' combine_plot_fields *'
	126	IF ( model == 2 ) THEN
[114]	127	model_string = '_O'
[108]	128	PRINT*, ' now combining ocean data'
	129	PRINT*, ' ========================'
	130	ELSE
	131	PRINT*, ' now combining atmosphere data'
	132	PRINT*, ' ============================='
	133	ENDIF
	134	ENDIF
[1]	135	!
[108]	136	!-- 2D-arrays for ISO2D
	137	!-- Main loop for the three different cross-sections, starting with
	138	!-- xy-section
	139	modus = 'XY'
	140	PRINT*, ''
	141	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	142	!
[493]	143	!-- Take current time
	144	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
	145	CALL SYSTEM_CLOCK( count, count_rate )
	146	cpu_start_time = REAL( count ) / REAL( count_rate )
	147	#elif defined( __ibm )
	148	cpu_start_time = IRTC( ) * 1E-9
	149	#else
	150	PRINT*, '+++ INFORMATIVE: no time measurement defined on this host'
	151	#endif
	152
	153	netcdf_parallel = .FALSE.
	154	!
[108]	155	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	156	!-- create any output for this cross-section.
	157	danz = 0
	158	WRITE (id_string,'(I4.4)') danz
	159	INQUIRE ( &
	160	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	161	EXIST=found )
	162	!
	163	!-- Find out the number of files (equal to the number of PEs which
	164	!-- have been used in PALM) and open them
	165	DO WHILE ( found )
[1]	166
[108]	167	OPEN ( danz+110, &
	168	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	169	FORM='UNFORMATTED' )
	170	danz = danz + 1
	171	WRITE (id_string,'(I4.4)') danz
	172	INQUIRE ( &
	173	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	174	EXIST=found )
[1]	175
[108]	176	ENDDO
[1]	177
	178	!
[108]	179	!-- Inquire whether an iso2d parameter file exists
	180	INQUIRE( FILE='PLOT2D_'//modus//'_GLOBAL'//TRIM( model_string ), &
	181	EXIST=iso2d_output )
[1]	182
	183	!
[108]	184	!-- Inquire whether a NetCDF file exists
	185	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	186	EXIST=netcdf_0 )
[1]	187
	188	!
[108]	189	!-- Inquire whether a NetCDF file for time-averaged data exists
	190	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	191	EXIST=netcdf_1 )
[1]	192
[108]	193	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	194	netcdf_output = .TRUE.
[493]	195	!
	196	!-- Inquire whether the NetCDF file is already complete (parallel
	197	!-- output)
	198	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	199	EXIST=netcdf_parallel )
	200	IF ( netcdf_parallel ) THEN
	201	netcdf_parallel = .TRUE.
	202	ELSE
	203	netcdf_parallel = .FALSE.
	204	ENDIF
[108]	205	ELSE
	206	netcdf_output = .FALSE.
	207	ENDIF
[1]	208
	209	!
[108]	210	!-- Info-output
	211	PRINT*, ''
	212	PRINT, ' combine_plot_fields *'
[1]	213	#if defined( __netcdf )
[493]	214	IF ( netcdf_output ) THEN
	215	IF ( netcdf_parallel ) THEN
	216	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	217	'(NetCDF4-format) - merging not neccessary'
	218	ELSE
	219	PRINT*, ' NetCDF output enabled'
	220	ENDIF
	221	ENDIF
[1]	222	#else
[108]	223	IF ( netcdf_output ) THEN
	224	PRINT*, '--- Sorry, no NetCDF support on this host'
	225	netcdf_output = .FALSE.
	226	ENDIF
[1]	227	#endif
[493]	228	IF ( .NOT. netcdf_parallel ) THEN
	229	IF ( danz /= 0 ) THEN
	230	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	231	ELSE
	232	PRINT*, ' no ', modus, '-section data available'
	233	ENDIF
[108]	234	ENDIF
[1]	235
[493]	236	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	237	THEN
[1]	238	#if defined( __netcdf )
[108]	239	DO av = 0, 1
[1]	240
[108]	241	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	242	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	243
	244	!
[108]	245	!-- Open NetCDF dataset
	246	IF ( av == 0 ) THEN
	247	filename = 'DATA_2D_'//modus//'_NETCDF' &
	248	//TRIM( model_string )
	249	ELSE
	250	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	251	//TRIM( model_string )
	252	ENDIF
	253	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	254	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	255
	256	!
[108]	257	!-- Get the list of variables (order of variables corresponds with
	258	!-- the order of data on the binary file)
	259	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	260	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	261	var_list(av) )
	262	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	263
	264	!
[108]	265	!-- Inquire id of the time coordinate variable
	266	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	267	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	268
	269	!
[108]	270	!-- Count number of variables; there is one more semicolon in the
	271	!-- string than variable names
	272	num_var(av) = -1
	273	DO i = 1, LEN( var_list(av) )
	274	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	275	ENDDO
[1]	276
	277	!
[108]	278	!-- Extract the variable names from the list and inquire their
	279	!-- NetCDF IDs
	280	pos = INDEX( var_list(av), ';' )
[1]	281	!
[108]	282	!-- Loop over all variables
	283	DO i = 1, num_var(av)
[1]	284
	285	!
[108]	286	!-- Extract variable name from list
	287	var_list(av) = var_list(av)(pos+1:)
	288	pos = INDEX( var_list(av), ';' )
	289	var_name = var_list(av)(1:pos-1)
[1]	290
	291	!
[108]	292	!-- Get variable ID from name
	293	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	294	id_var(av,i) )
	295	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	296
	297	!
[108]	298	!-- Get number of x/y/z levels for that variable
	299	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	300	dimids = id_dims_loc )
	301	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	302	id_dims(av,:) = id_dims_loc
[1]	303
	304	!
[108]	305	!-- Inquire dimension ID
	306	DO j = 1, 4
	307	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	308	id_dims(av,j), dimname, levels(av,i) )
	309	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	310
[108]	311	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	312	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	313	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	314	ENDDO
	315
[1]	316	ENDDO
	317
[108]	318	ENDDO ! av = 0, 1
[1]	319
[179]	320	#endif
[108]	321	ENDIF
[1]	322
	323	!
[108]	324	!-- Read the arrays, as long as the end of the file is reached
[493]	325	IF ( .NOT. netcdf_parallel ) THEN
[1]	326
[493]	327	fanz = 0
	328	current_level = 1
	329	current_var = 999999999
[1]	330
[493]	331	DO WHILE ( danz /= 0 )
	332
[1]	333	!
[493]	334	!-- Loop over all files (reading data of the subdomains)
	335	DO id = 0, danz-1
[1]	336	!
[493]	337	!-- File from PE0 contains special information at the beginning,
	338	!-- concerning the lower and upper indices of the total-domain
	339	!-- used in PALM (nxag, nxeg, nyag, nyeg) and the lower and
	340	!-- upper indices of the array to be writte by this routine
	341	!-- (nxa, nxe, nya, nye). Usually in the horizontal directions
	342	!-- nxag=-1 and nxa=0 while all other variables have the same
	343	!-- value (i.e. nxeg=nxe).
	344	!-- Allocate necessary arrays, open the output file and write
	345	!-- the coordinate informations needed by ISO2D.
	346	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
	347	READ ( id+110 ) nxag, nxeg, nyag, nyeg
	348	READ ( id+110 ) nxa, nxe, nya, nye
	349	ALLOCATE ( eta(nya:nye), ho(nxa:nxe), hu(nxa:nxe), &
	350	pf(nxag:nxeg,nyag:nyeg) )
	351	READ ( id+110 ) dx, eta, hu, ho
[1]	352
[493]	353	IF ( iso2d_output ) THEN
	354	OPEN ( 2, FILE='PLOT2D_'//modus//TRIM( model_string ),&
	355	FORM='UNFORMATTED' )
	356	WRITE ( 2 ) dx, eta, hu, ho
	357	ENDIF
[108]	358	ENDIF
[1]	359	!
[493]	360	!-- Read output time
	361	IF ( netcdf_output .AND. id == 0 ) THEN
	362	IF ( netcdf_1 ) THEN
	363	READ ( id+110, END=998 ) simulated_time, time_step, av
	364	ELSE
[1]	365	!
[493]	366	!-- For compatibility with earlier PALM versions
	367	READ ( id+110, END=998 ) simulated_time, time_step
	368	av = 0
	369	ENDIF
[108]	370	ENDIF
[1]	371	!
[493]	372	!-- Read subdomain indices
	373	READ ( id+110, END=998 ) xa, xe, ya, ye
[1]	374	!
[493]	375	!-- IF the PE made no output (in case that no part of the
	376	!-- cross-section is situated on this PE), indices have the
	377	!-- value -1
	378	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	379	ya == -1 .AND. ye == -1 ) ) THEN
[1]	380	!
[493]	381	!-- Read the subdomain grid-point values
	382	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	383	READ ( id+110 ) pf_tmp
	384	pf(xa:xe,ya:ye) = pf_tmp
	385	DEALLOCATE( pf_tmp )
	386	ENDIF
	387	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	388
[493]	389	ENDDO
[1]	390	!
[493]	391	!-- Write the data of the total domain cross-section
	392	IF ( iso2d_output ) WRITE ( 2 ) pf(nxa:nxe,nya:nye)
[1]	393
	394	!
[493]	395	!-- Write same data in NetCDF format
	396	IF ( netcdf_output ) THEN
[1]	397	#if defined( __netcdf )
	398	!
[493]	399	!-- Check if a new time step has begun; if yes write data to
	400	!-- time axis
	401	IF ( current_var(av) > num_var(av) ) THEN
	402	current_var(av) = 1
	403	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	404	(/ simulated_time /), &
	405	start = (/ time_step /), &
	406	count = (/ 1 /) )
	407	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	408	ENDIF
[1]	409
	410	!
[493]	411	!-- Now write the data; this is mode dependent
	412	SELECT CASE ( modus )
[1]	413
[493]	414	CASE ( 'XY' )
	415	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	416	id_var(av,current_var(av)), &
	417	pf(nxa:nxe,nya:nye), &
	418	start = (/ 1, 1, current_level(av), time_step /), &
	419	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	420	IF ( nc_stat /= NF90_NOERR ) THEN
	421	CALL handle_netcdf_error( 8 )
	422	ENDIF
[1]	423
[493]	424	CASE ( 'XZ' )
	425	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	426	id_var(av,current_var(av)), &
	427	pf(nxa:nxe,nya:nye), &
	428	start = (/ 1, current_level(av), 1, time_step /), &
	429	count = (/ nxe-nxa+1, 1, nye-nya+1, 1 /) )
[493]	430	IF ( nc_stat /= NF90_NOERR ) THEN
	431	CALL handle_netcdf_error( 9 )
	432	ENDIF
[1]	433
[493]	434	CASE ( 'YZ' )
	435	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	436	id_var(av,current_var(av)), &
	437	pf(nxa:nxe,nya:nye), &
	438	start = (/ current_level(av), 1, 1, time_step /), &
	439	count = (/ 1, nxe-nxa+1, nye-nya+1, 1 /) )
[493]	440	IF ( nc_stat /= NF90_NOERR ) THEN
	441	CALL handle_netcdf_error( 10 )
	442	ENDIF
[1]	443
[493]	444	END SELECT
[1]	445
	446	!
[493]	447	!-- Data is written, check if max level is reached
	448	current_level(av) = current_level(av) + 1
	449	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	450	current_level(av) = 1
	451	current_var(av) = current_var(av) + 1
	452	ENDIF
[108]	453
[179]	454	#endif
[493]	455	ENDIF
[1]	456
[493]	457	ENDDO
[1]	458
[493]	459	ENDIF
	460
	461	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	462	!
[108]	463	!-- Print the number of the arrays processed
	464	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	465	IF ( fanz(1) /= 0 ) THEN
	466	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	467	ENDIF
[1]	468
	469	!
[108]	470	!-- Close all files and deallocate arrays
	471	DO id = 0, danz-1
	472	CLOSE ( id+110 )
	473	ENDDO
	474	CLOSE ( 2 )
	475	DEALLOCATE ( eta, ho, hu, pf )
[1]	476
	477	!
[493]	478	!-- Close the NetCDF file
	479	IF ( netcdf_output ) THEN
[1]	480	#if defined( __netcdf )
[493]	481	IF ( netcdf_0 ) THEN
	482	nc_stat = NF90_CLOSE( id_set(0) )
	483	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	484	ENDIF
	485	IF ( netcdf_1 ) THEN
	486	nc_stat = NF90_CLOSE( id_set(1) )
	487	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	488	ENDIF
	489	#endif
[108]	490	ENDIF
[493]	491	ENDIF
	492
	493	!
	494	!-- Output required cpu time
	495	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	496	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
	497	CALL SYSTEM_CLOCK( count, count_rate )
	498	cpu_end_time = REAL( count ) / REAL( count_rate )
	499	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	500	cpu_end_time-cpu_start_time, ' sec'
	501	#elif defined( __ibm )
	502	cpu_end_time = IRTC( ) * 1E-9
	503	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	504	cpu_end_time-cpu_start_time, ' sec'
	505	#else
	506	CONTINUE
[108]	507	#endif
[1]	508	ENDIF
	509
	510	!
[108]	511	!-- Choose the next cross-section
	512	SELECT CASE ( modus )
	513	CASE ( 'XY' )
	514	modus = 'XZ'
	515	CASE ( 'XZ' )
	516	modus = 'YZ'
	517	CASE ( 'YZ' )
	518	modus = 'no'
	519	END SELECT
[1]	520
[108]	521	ENDDO
[1]	522
	523
	524	!
[108]	525	!-- Combine the 3D-arrays
[493]	526	netcdf_parallel = .FALSE.
[1]	527
	528	!
[493]	529	!-- Info-output
	530	PRINT*, ' '
	531	PRINT, ' combine_plot_fields *'
	532
	533	!
	534	!-- Take current time
	535	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
	536	CALL SYSTEM_CLOCK( count, count_rate )
	537	cpu_start_time = REAL( count ) / REAL( count_rate )
	538	#elif defined( __ibm )
	539	cpu_start_time = IRTC( ) * 1E-9
	540	#else
	541	PRINT*, '+++ INFORMATIVE: no time measurement defined on this host'
	542	#endif
	543
	544	!
[108]	545	!-- Inquire whether an avs fld file exists
	546	INQUIRE( FILE='PLOT3D_FLD'//TRIM( model_string ), EXIST=avs_output )
[1]	547
	548	!
[108]	549	!-- Inquire whether a NetCDF file exists
	550	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	551
	552	!
[108]	553	!-- Inquire whether a NetCDF file for time-averaged data exists
	554	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	555
[108]	556	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	557	netcdf_output = .TRUE.
[493]	558	!
	559	!-- Inquire whether the NetCDF file is already complete (parallel output)
	560	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	561	IF ( netcdf_parallel ) THEN
	562	netcdf_parallel = .TRUE.
	563	ELSE
	564	netcdf_parallel = .FALSE.
	565	ENDIF
[108]	566	ELSE
	567	netcdf_output = .FALSE.
	568	ENDIF
[1]	569
	570	!
[493]	571	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	572	!-- PALM output
	573	IF ( .NOT. netcdf_parallel ) THEN
	574	danz = 0
	575	WRITE (id_string,'(I4.4)') danz
	576	INQUIRE ( &
	577	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	578	EXIST=found )
	579	ELSE
	580	found = .FALSE.
	581	ENDIF
[1]	582
	583	!
[108]	584	!-- Combination only works, if data are not compressed. In that case,
	585	!-- PALM created a flag file (PLOT3D_COMPRESSED)
	586	INQUIRE ( FILE='PLOT3D_COMPRESSED'//TRIM( model_string ), &
	587	EXIST=compressed )
[1]	588
	589	!
[108]	590	!-- Find out the number of files and open them
	591	DO WHILE ( found .AND. .NOT. compressed )
[1]	592
[108]	593	OPEN ( danz+110, &
	594	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	595	FORM='UNFORMATTED')
	596	danz = danz + 1
	597	WRITE (id_string,'(I4.4)') danz
	598	INQUIRE ( &
	599	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	600	EXIST=found )
[1]	601
[108]	602	ENDDO
[1]	603
	604	#if defined( __netcdf )
[493]	605	IF ( netcdf_output ) THEN
	606	IF ( netcdf_parallel ) THEN
	607	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	608	' - merging not neccessary'
	609	ELSE
	610	PRINT*, ' NetCDF output enabled'
	611	ENDIF
	612	ENDIF
[1]	613	#else
	614	IF ( netcdf_output ) THEN
	615	PRINT*, '--- Sorry, no NetCDF support on this host'
	616	netcdf_output = .FALSE.
	617	ENDIF
	618	#endif
[493]	619	IF ( .NOT. netcdf_parallel ) THEN
	620	IF ( danz /= 0 ) THEN
	621	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	622	ELSE
[493]	623	IF ( found .AND. compressed ) THEN
	624	PRINT*, '+++ no 3D-data processing, since data are compressed'
	625	ELSE
	626	PRINT*, ' no 3D-data file available'
	627	ENDIF
[108]	628	ENDIF
[1]	629	ENDIF
	630
[493]	631	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	632	#if defined( __netcdf )
[108]	633	DO av = 0, 1
[1]	634
[108]	635	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	636	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	637
	638	!
[108]	639	!-- Open NetCDF dataset
	640	IF ( av == 0 ) THEN
	641	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	642	ELSE
	643	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	644	ENDIF
	645	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	646	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	647
	648
	649	!
[108]	650	!-- Get the list of variables (order of variables corresponds with the
	651	!-- order of data on the binary file)
	652	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	653	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	654	var_list(av) )
	655	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	656
	657	!
[108]	658	!-- Inquire id of the time coordinate variable
	659	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	660	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	661
	662	!
[108]	663	!-- Count number of variables; there is one more semicolon in the
	664	!-- string than variable names
	665	num_var(av) = -1
	666	DO i = 1, LEN( var_list(av) )
	667	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	668	ENDDO
[1]	669
	670	!
[108]	671	!-- Extract the variable names from the list and inquire their NetCDF
	672	!-- IDs
	673	pos = INDEX( var_list(av), ';' )
[1]	674	!
[108]	675	!-- Loop over all variables
	676	DO i = 1, num_var(av)
[1]	677
	678	!
[108]	679	!-- Extract variable name from list
	680	var_list(av) = var_list(av)(pos+1:)
	681	pos = INDEX( var_list(av), ';' )
	682	var_name = var_list(av)(1:pos-1)
[1]	683
	684	!
[108]	685	!-- Get variable ID from name
	686	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	687	id_var(av,i) )
	688	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	689
[108]	690	ENDDO
[1]	691
[108]	692	ENDDO ! av=0,1
[1]	693
[179]	694	#endif
[108]	695	ENDIF
[1]	696
	697	!
[108]	698	!-- Read arrays, until the end of the file is reached
[493]	699	IF ( .NOT. netcdf_parallel ) THEN
[1]	700
[493]	701	current_var = 999999999
	702	fanz = 0
	703	DO WHILE ( danz /= 0 )
	704
[1]	705	!
[493]	706	!-- Loop over all files
	707	DO id = 0, danz-1
[1]	708	!
[493]	709	!-- File from PE0 contains special information at the beginning,
	710	!-- concerning the lower and upper indices of the total-domain used
	711	!-- in PALM (nxag, nxeg, nyag, nyeg, nzag, nzeg) and the lower and
	712	!-- upper indices of the array to be written by this routine (nxa,
	713	!-- nxe, nya, nye, nza, nze). Usually nxag=-1 and nxa=0, nyag=-1
	714	!-- and nya=0, nzeg=nz and nze=nz_plot3d.
	715	!-- Allocate necessary array and open the output file.
	716	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
	717	READ ( id+110 ) nxag, nxeg, nyag, nyeg, nzag, nzeg
	718	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	719	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
	720	IF ( avs_output ) THEN
	721	OPEN ( 2, FILE='PLOT3D_DATA'//TRIM( model_string ), &
	722	FORM='UNFORMATTED' )
	723	ENDIF
[108]	724	ENDIF
[1]	725
	726	!
[493]	727	!-- Read output time
	728	IF ( netcdf_output .AND. id == 0 ) THEN
	729	IF ( netcdf_1 ) THEN
	730	READ ( id+110, END=999 ) simulated_time, time_step, av
	731	ELSE
[1]	732	!
[493]	733	!-- For compatibility with earlier PALM versions
	734	READ ( id+110, END=999 ) simulated_time, time_step
	735	av = 0
	736	ENDIF
[108]	737	ENDIF
[1]	738
	739	!
[493]	740	!-- Read subdomain indices and grid point values
	741	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	742	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	743	READ ( id+110 ) pf3d_tmp
[210]	744
[493]	745	xxa = MAX( nxa, xa )
	746	xxe = MIN( nxe, xe )
	747	yya = MAX( nya, ya )
	748	yye = MIN( nye, ye )
	749	zza = MAX( nza, za )
	750	zze = MIN( nze, ze )
	751	DO k = zza, zze
	752	DO j = yya, yye
	753	DO i = xxa, xxe
	754	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	755	ENDDO
[210]	756	ENDDO
	757	ENDDO
	758
[493]	759	DEALLOCATE( pf3d_tmp )
	760	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	761
[493]	762	ENDDO
[1]	763
	764	!
[493]	765	!-- Write data of the total domain
	766	IF ( avs_output ) WRITE ( 2 ) pf3d(nxa:nxe,nya:nye,nza:nze)
[1]	767
	768	!
[493]	769	!-- Write same data in NetCDF format
	770	IF ( netcdf_output ) THEN
[1]	771	#if defined( __netcdf )
	772	!
[493]	773	!-- Check if a new time step has begun; if yes write data to time
	774	!-- axis
	775	IF ( current_var(av) > num_var(av) ) THEN
	776	current_var(av) = 1
	777	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	778	(/ simulated_time /),&
	779	start = (/ time_step /), count = (/ 1 /) )
	780	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	781	ENDIF
[1]	782
	783	!
[493]	784	!-- Now write the data
	785	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
	786	pf3d, start = (/ 1, 1, 1, time_step /),&
[1]	787	count = (/ nxe-nxa+1, nye-nya+1, nze-nza+1, 1 /) )
[493]	788	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	789
[493]	790	current_var(av) = current_var(av) + 1
[1]	791
	792	#endif
[493]	793	ENDIF
[1]	794
[493]	795	ENDDO
[1]	796
[493]	797	ENDIF
	798
	799	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	800	!
[108]	801	!-- Print the number of arrays processed
	802	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	803	IF ( fanz(1) /= 0 ) THEN
	804	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	805	ENDIF
[1]	806	!
[108]	807	!-- Close all files and deallocate array
	808	DO id = 0, danz-1
	809	CLOSE ( id+110 )
	810	ENDDO
	811	CLOSE ( 2 )
	812	DEALLOCATE ( pf3d )
[1]	813	!
[108]	814	!-- Close the NetCDF file
	815	IF ( netcdf_output ) THEN
[1]	816	#if defined( __netcdf )
[108]	817	IF ( netcdf_0 ) THEN
	818	nc_stat = NF90_CLOSE( id_set(0) )
	819	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	820	ENDIF
	821	IF ( netcdf_1 ) THEN
	822	nc_stat = NF90_CLOSE( id_set(1) )
	823	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	824	ENDIF
	825	#endif
[1]	826	ENDIF
[493]	827
	828	!
	829	!-- Output required cpu time
	830	#if defined( __lc ) \|\| defined( __decalpha ) \|\| defined( __nec )
	831	CALL SYSTEM_CLOCK( count, count_rate )
	832	cpu_end_time = REAL( count ) / REAL( count_rate )
	833	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	834	cpu_end_time-cpu_start_time, ' sec'
	835	#elif defined( __ibm )
	836	cpu_end_time = IRTC( ) * 1E-9
	837	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	838	cpu_end_time-cpu_start_time, ' sec'
	839	#endif
	840
[1]	841	ENDIF
	842
[108]	843	ENDDO ! models
[1]	844
[108]	845
[1]	846	CONTAINS
	847
	848
	849	SUBROUTINE handle_netcdf_error( errno )
	850	!
	851	!-- Prints out a text message corresponding to the current NetCDF status
	852
	853	IMPLICIT NONE
	854
	855	INTEGER, INTENT(IN) :: errno
	856
[179]	857	#if defined( __netcdf )
[1]	858	IF ( nc_stat /= NF90_NOERR ) THEN
	859	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	860	TRIM( nf90_strerror( nc_stat ) )
	861	ENDIF
[179]	862	#endif
[1]	863
	864	END SUBROUTINE handle_netcdf_error
	865
	866
	867	END PROGRAM combine_plot_fields
	868
	869
	870

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