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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 3602

Last change on this file since 3602 was 3241, checked in by raasch, 6 years ago
various changes to avoid compiler warnings (mainly removal of unused variables)
Property svn:keywords set to `Id`
File size: 30.0 KB

Rev	Line
[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
[2696]	4	! This file is part of the PALM model system.
[1046]	5	!
[2696]	6	! PALM is free software: you can redistribute it and/or modify it under the
	7	! terms of the GNU General Public License as published by the Free Software
	8	! Foundation, either version 3 of the License, or (at your option) any later
	9	! version.
[1046]	10	!
	11	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	12	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	13	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	14	!
	15	! You should have received a copy of the GNU General Public License along with
	16	! PALM. If not, see <http://www.gnu.org/licenses/>.
	17	!
[2718]	18	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2696]	19	!------------------------------------------------------------------------------!
[1046]	20	!
[691]	21	! Current revisions:
[1]	22	! -----------------
[1469]	23	!
[2365]	24	!
[226]	25	! Former revisions:
	26	! -----------------
	27	! $Id: combine_plot_fields.f90 3241 2018-09-12 15:02:00Z sward $
[3241]	28	! unused variables removed
	29	!
	30	! 2718 2018-01-02 08:49:38Z maronga
[2716]	31	! Corrected "Former revisions" section
	32	!
	33	! 2696 2017-12-14 17:12:51Z kanani
	34	! Change in file header (GPL part)
	35	!
	36	! 2669 2017-12-06 16:03:27Z raasch
[2669]	37	! data of 3d-nest runs are completely processed now
	38	!
	39	! 2523 2017-10-05 14:42:47Z kanani
[2523]	40	! Increased LEN for CHARACTER variable var_name, equal to the value in PALM
	41	!
	42	! 2512 2017-10-04 08:26:59Z raasch
[2512]	43	! PALM output does not contain ghost layer data any more
	44	! avs- and iso2d-related parts removed, handling of compressed data removed
	45	!
	46	! 2365 2017-08-21 14:59:59Z kanani
[2365]	47	! Vertical grid nesting implemented (SadiqHuq)
[226]	48	!
[2365]	49	! 1809 2016-04-05 20:13:28Z raasch
	50	!
[1809]	51	! 1808 2016-04-05 19:44:00Z raasch
	52	! cpu measurements are done with standard FORTRAN routine on every machine
	53	!
[1552]	54	! 1551 2015-03-03 14:18:16Z maronga
	55	! Adjustments for data output of soil model quantities
	56	!
[1469]	57	! 1468 2014-09-24 14:06:57Z maronga
	58	! Adapted for use on up to 6-digit processor cores (not tested)
	59	!
[1395]	60	! 1394 2014-05-06 10:17:31Z keck
	61	! KIND-attribute added to all INTEGER and REAL declaration statements
	62	!
[1047]	63	! 1046 2012-11-09 14:38:45Z maronga
	64	! code put under GPL (PALM 3.9)
	65	!
[692]	66	! 691 2011-03-04 08:45:30Z maronga
	67	! Bugfix: check for precursor ocean runs, removed typo
	68	!
[494]	69	! 493 2010-03-01 08:30:24Z raasch
	70	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	71	! cpu measurements included
	72	!
[226]	73	! 210 2008-11-06 08:54:02Z raasch
[210]	74	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	75	! all three dimensions), because output of a subset of the data
	76	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	77	! with the INTEL compiler.
[191]	78	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	79	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	80	! Bugfix: three misplaced #endif directives
[1]	81	!
[139]	82	! 114 2007-10-10 00:03:15Z raasch
	83	! Bugfix: model_string needed a default value
	84	!
[114]	85	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	86	! contain modus any longer
	87	!
[1]	88	! 18/01/06 Output of time-averaged data
	89	!
	90	! 25/05/05 Errors removed
	91	!
	92	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	93	! file exists
	94	!
	95	! 31/10/01 All comments and messages translated into English
	96	!
	97	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	98	! Ursprungsversion vom 28/07/97
	99	!
	100	!
	101	! Description:
	102	! ------------
	103	! This routine combines data of the PALM-subdomains into one file. In PALM
	104	! every processor element opens its own file and writes 2D- or 3D-binary-data
	105	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	106	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	107	! to be put into single files, which is done by this routine.
	108	! Output format is NetCDF. Additionally, a data are output in a binary format
	109	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	110	!------------------------------------------------------------------------------!
	111
	112	#if defined( __netcdf )
	113	USE netcdf
	114	#endif
	115
	116	IMPLICIT NONE
	117
	118	!
	119	!-- Local variables
[2669]	120	CHARACTER (LEN=2) :: modus
	121	CHARACTER (LEN=4) :: model_string
[1468]	122	CHARACTER (LEN=6) :: id_string
[2523]	123	CHARACTER (LEN=30) :: dimname, var_name
[1]	124	CHARACTER (LEN=40) :: filename
	125
	126	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	127
[1394]	128	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
[1]	129
[1394]	130	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
[3241]	131	nxa, nxe, nya, nye, &
[2669]	132	nza, nze, pos, time_step, xa, xe, xxa, xxe, ya, ya_do, &
[3241]	133	ya_tot, ye, ye_do, ye_tot, yya, yye, za, ze
[1]	134
[1808]	135	INTEGER(8) :: count, count_rate
[493]	136
[1394]	137	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
	138	fanz, id_set, id_var_time, num_var
	139	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
	140	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
	141	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
[1]	142
[2669]	143	LOGICAL :: found, nest3d, netcdf_output, netcdf_parallel, netcdf_0, &
	144	netcdf_1, vnest
[1]	145
[3241]	146	REAL(wp) :: cpu_start_time, cpu_end_time, simulated_time
[1394]	147	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
[191]	148	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	149
[2365]	150
	151
[1]	152	PRINT*, ''
[114]	153	PRINT*, ''
[108]	154	PRINT, ' combine_plot_fields *'
[114]	155
	156	!
[2669]	157	!-- Find out if a coupled or nested run has been carried out
[108]	158	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
[2365]	159	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
[2669]	160	INQUIRE( FILE='3DNESTING', EXIST=nest3d )
[108]	161	IF ( found ) THEN
	162	models = 2
	163	PRINT*, ' coupled run'
[2365]	164	ELSEIF ( vnest ) THEN
	165	models = 2
	166	PRINT*, ' Vertically nested grid coupling'
[2669]	167	ELSEIF ( nest3d ) THEN
	168	OPEN( 90, FILE='3DNESTING', FORM='FORMATTED' )
	169	READ ( 90, '(I2)' ) models
	170	CLOSE ( 90 )
	171	PRINT*, ' 3d-nest run'
	172	PRINT*, ' number of nest domains = ', models
[108]	173	ELSE
	174	models = 1
	175	PRINT*, ' uncoupled run'
	176	ENDIF
[114]	177
	178	!
[691]	179	!-- Find out if a precursor ocean run has been carried out
	180	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
	181	IF ( found ) THEN
	182	model_string = '_O'
	183	PRINT*, ' precursor ocean run'
	184	ELSE
	185	model_string = ''
	186	ENDIF
	187
	188	!
[114]	189	!-- Do everything for each model
[108]	190	DO model = 1, models
[114]	191	!
	192	!-- Set the model string used to identify the filenames
[2669]	193	IF ( found .OR. vnest ) THEN
[108]	194	PRINT*, ''
	195	IF ( model == 2 ) THEN
[2365]	196	IF ( vnest ) THEN
	197	model_string = '_N'
	198	PRINT*, ' now combining FINE data'
	199	PRINT*, ' ========================'
	200	ELSE
	201	model_string = '_O'
	202	PRINT*, ' now combining ocean data'
	203	PRINT*, ' ========================'
	204	ENDIF
[108]	205	ELSE
[2365]	206	IF ( vnest ) THEN
	207	PRINT*, ' now combining COARSE data'
	208	PRINT*, ' ============================='
	209	ELSE
	210	PRINT*, ' now combining atmosphere data'
	211	PRINT*, ' ============================='
	212	ENDIF
[108]	213	ENDIF
[2669]	214	ELSEIF ( nest3d ) THEN
	215	PRINT*, ''
	216	PRINT*, '--> processing nest id = ', model
	217	IF ( model == 1 ) THEN
	218	model_string = ''
	219	ELSE
	220	WRITE( model_string, '(A2,I2.2)' ) '_N', model
	221	ENDIF
[108]	222	ENDIF
[1]	223	!
[108]	224	!-- 2D-arrays for ISO2D
	225	!-- Main loop for the three different cross-sections, starting with
	226	!-- xy-section
	227	modus = 'XY'
	228	PRINT*, ''
	229	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	230	!
[493]	231	!-- Take current time
	232	CALL SYSTEM_CLOCK( count, count_rate )
	233	cpu_start_time = REAL( count ) / REAL( count_rate )
	234
	235	netcdf_parallel = .FALSE.
	236	!
[108]	237	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	238	!-- create any output for this cross-section.
	239	danz = 0
[1468]	240	WRITE (id_string,'(I6.6)') danz
[108]	241	INQUIRE ( &
	242	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	243	EXIST=found )
	244	!
	245	!-- Find out the number of files (equal to the number of PEs which
	246	!-- have been used in PALM) and open them
	247	DO WHILE ( found )
[1]	248
[108]	249	OPEN ( danz+110, &
	250	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	251	FORM='UNFORMATTED' )
	252	danz = danz + 1
[1468]	253	WRITE (id_string,'(I6.6)') danz
[108]	254	INQUIRE ( &
	255	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	256	EXIST=found )
[1]	257
[108]	258	ENDDO
[1]	259
	260	!
[108]	261	!-- Inquire whether a NetCDF file exists
	262	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	263	EXIST=netcdf_0 )
[1]	264
	265	!
[108]	266	!-- Inquire whether a NetCDF file for time-averaged data exists
	267	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	268	EXIST=netcdf_1 )
[1]	269
[108]	270	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	271	netcdf_output = .TRUE.
[493]	272	!
	273	!-- Inquire whether the NetCDF file is already complete (parallel
	274	!-- output)
	275	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	276	EXIST=netcdf_parallel )
	277	IF ( netcdf_parallel ) THEN
	278	netcdf_parallel = .TRUE.
	279	ELSE
	280	netcdf_parallel = .FALSE.
	281	ENDIF
[108]	282	ELSE
	283	netcdf_output = .FALSE.
	284	ENDIF
[1]	285
	286	!
[108]	287	!-- Info-output
	288	PRINT*, ''
[1]	289	#if defined( __netcdf )
[493]	290	IF ( netcdf_output ) THEN
	291	IF ( netcdf_parallel ) THEN
	292	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	293	'(NetCDF4-format) - merging not neccessary'
	294	ELSE
	295	PRINT*, ' NetCDF output enabled'
	296	ENDIF
	297	ENDIF
[1]	298	#else
[108]	299	IF ( netcdf_output ) THEN
	300	PRINT*, '--- Sorry, no NetCDF support on this host'
	301	netcdf_output = .FALSE.
	302	ENDIF
[1]	303	#endif
[493]	304	IF ( .NOT. netcdf_parallel ) THEN
	305	IF ( danz /= 0 ) THEN
	306	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	307	ELSE
	308	PRINT*, ' no ', modus, '-section data available'
	309	ENDIF
[108]	310	ENDIF
[1]	311
[493]	312	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	313	THEN
[1]	314	#if defined( __netcdf )
[108]	315	DO av = 0, 1
[1]	316
[108]	317	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	318	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	319
	320	!
[108]	321	!-- Open NetCDF dataset
	322	IF ( av == 0 ) THEN
	323	filename = 'DATA_2D_'//modus//'_NETCDF' &
	324	//TRIM( model_string )
	325	ELSE
	326	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	327	//TRIM( model_string )
	328	ENDIF
	329	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	330	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	331
	332	!
[108]	333	!-- Get the list of variables (order of variables corresponds with
	334	!-- the order of data on the binary file)
	335	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	336	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	337	var_list(av) )
	338	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	339
	340	!
[108]	341	!-- Inquire id of the time coordinate variable
	342	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	343	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	344
	345	!
[108]	346	!-- Count number of variables; there is one more semicolon in the
	347	!-- string than variable names
	348	num_var(av) = -1
	349	DO i = 1, LEN( var_list(av) )
	350	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	351	ENDDO
[1]	352
	353	!
[108]	354	!-- Extract the variable names from the list and inquire their
	355	!-- NetCDF IDs
	356	pos = INDEX( var_list(av), ';' )
[1]	357	!
[108]	358	!-- Loop over all variables
	359	DO i = 1, num_var(av)
[1]	360
	361	!
[108]	362	!-- Extract variable name from list
	363	var_list(av) = var_list(av)(pos+1:)
	364	pos = INDEX( var_list(av), ';' )
	365	var_name = var_list(av)(1:pos-1)
[1]	366
	367	!
[108]	368	!-- Get variable ID from name
	369	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	370	id_var(av,i) )
	371	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	372
	373	!
[108]	374	!-- Get number of x/y/z levels for that variable
	375	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	376	dimids = id_dims_loc )
	377	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	378	id_dims(av,:) = id_dims_loc
[1]	379
	380	!
[108]	381	!-- Inquire dimension ID
	382	DO j = 1, 4
	383	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	384	id_dims(av,j), dimname, levels(av,i) )
	385	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	386
[108]	387	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	388	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	389	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	390	ENDDO
	391
[1]	392	ENDDO
	393
[108]	394	ENDDO ! av = 0, 1
[1]	395
[179]	396	#endif
[108]	397	ENDIF
[1]	398
	399	!
[108]	400	!-- Read the arrays, as long as the end of the file is reached
[493]	401	IF ( .NOT. netcdf_parallel ) THEN
[1]	402
[493]	403	fanz = 0
	404	current_level = 1
	405	current_var = 999999999
[1]	406
[493]	407	DO WHILE ( danz /= 0 )
	408
[1]	409	!
[493]	410	!-- Loop over all files (reading data of the subdomains)
	411	DO id = 0, danz-1
[1]	412	!
[493]	413	!-- File from PE0 contains special information at the beginning,
	414	!-- concerning the lower and upper indices of the total-domain
[2512]	415	!-- used in PALM (nxa, nxe, nya, nye).
[493]	416	!-- Allocate necessary arrays, open the output file and write
	417	!-- the coordinate informations needed by ISO2D.
	418	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	419
[493]	420	READ ( id+110 ) nxa, nxe, nya, nye
[2512]	421	ALLOCATE ( pf(nxa:nxe,nya:nye) )
[1551]	422	!
	423	!-- Set actual domain bounds to total domain
	424	ya_do = nya
	425	ye_do = nye
	426
[108]	427	ENDIF
[1]	428	!
[493]	429	!-- Read output time
	430	IF ( netcdf_output .AND. id == 0 ) THEN
[2512]	431	READ ( id+110, END=998 ) simulated_time, time_step, av
[108]	432	ENDIF
[1]	433	!
[493]	434	!-- Read subdomain indices
[1551]	435	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
	436
[1]	437	!
[493]	438	!-- IF the PE made no output (in case that no part of the
	439	!-- cross-section is situated on this PE), indices have the
	440	!-- value -1
	441	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	442	ya == -1 .AND. ye == -1 ) ) THEN
[1551]	443
	444
[1]	445	!
[493]	446	!-- Read the subdomain grid-point values
	447	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	448	READ ( id+110 ) pf_tmp
[1551]	449	!
	450	!-- Calculate indices on atmospheric grid (e.g. for soil model
	451	!-- quantities)
	452	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
	453	ye_do = ye - ya
	454	ya_do = ya
	455	pf(xa:xe,ya_do:ye_do) = pf_tmp
	456	ELSE
	457	ye_do = nye
	458	ya_do = nya
	459	pf(xa:xe,ya:ye) = pf_tmp
	460	ENDIF
	461
[493]	462	DEALLOCATE( pf_tmp )
	463	ENDIF
	464	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	465
[493]	466	ENDDO
[1]	467	!
[2512]	468	!-- Write data in NetCDF format
[493]	469	IF ( netcdf_output ) THEN
[1]	470	#if defined( __netcdf )
	471	!
[493]	472	!-- Check if a new time step has begun; if yes write data to
	473	!-- time axis
	474	IF ( current_var(av) > num_var(av) ) THEN
	475	current_var(av) = 1
	476	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	477	(/ simulated_time /), &
	478	start = (/ time_step /), &
	479	count = (/ 1 /) )
	480	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	481	ENDIF
[1]	482
	483	!
[493]	484	!-- Now write the data; this is mode dependent
	485	SELECT CASE ( modus )
[1]	486
[493]	487	CASE ( 'XY' )
	488	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	489	id_var(av,current_var(av)), &
	490	pf(nxa:nxe,nya:nye), &
	491	start = (/ 1, 1, current_level(av), time_step /), &
	492	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	493	IF ( nc_stat /= NF90_NOERR ) THEN
	494	CALL handle_netcdf_error( 8 )
	495	ENDIF
[1]	496
[493]	497	CASE ( 'XZ' )
	498	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	499	id_var(av,current_var(av)), &
[1551]	500	pf(nxa:nxe,ya_do:ye_do), &
[1]	501	start = (/ 1, current_level(av), 1, time_step /), &
[1551]	502	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
[493]	503	IF ( nc_stat /= NF90_NOERR ) THEN
	504	CALL handle_netcdf_error( 9 )
	505	ENDIF
[1]	506
[493]	507	CASE ( 'YZ' )
	508	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	509	id_var(av,current_var(av)), &
[1551]	510	pf(nxa:nxe,ya_do:ye_do), &
[1]	511	start = (/ current_level(av), 1, 1, time_step /), &
[1551]	512	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
[493]	513	IF ( nc_stat /= NF90_NOERR ) THEN
	514	CALL handle_netcdf_error( 10 )
	515	ENDIF
[1]	516
[493]	517	END SELECT
[1]	518
	519	!
[493]	520	!-- Data is written, check if max level is reached
	521	current_level(av) = current_level(av) + 1
	522	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	523	current_level(av) = 1
	524	current_var(av) = current_var(av) + 1
	525	ENDIF
[108]	526
[179]	527	#endif
[493]	528	ENDIF
[1]	529
[493]	530	ENDDO
[1]	531
[493]	532	ENDIF
	533
	534	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	535	!
[108]	536	!-- Print the number of the arrays processed
	537	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	538	IF ( fanz(1) /= 0 ) THEN
	539	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	540	ENDIF
[1]	541
	542	!
[108]	543	!-- Close all files and deallocate arrays
	544	DO id = 0, danz-1
	545	CLOSE ( id+110 )
	546	ENDDO
	547	CLOSE ( 2 )
[2512]	548	DEALLOCATE ( pf )
[1]	549
	550	!
[493]	551	!-- Close the NetCDF file
	552	IF ( netcdf_output ) THEN
[1]	553	#if defined( __netcdf )
[493]	554	IF ( netcdf_0 ) THEN
	555	nc_stat = NF90_CLOSE( id_set(0) )
	556	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	557	ENDIF
	558	IF ( netcdf_1 ) THEN
	559	nc_stat = NF90_CLOSE( id_set(1) )
	560	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	561	ENDIF
	562	#endif
[108]	563	ENDIF
[493]	564	ENDIF
	565
	566	!
	567	!-- Output required cpu time
	568	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	569	CALL SYSTEM_CLOCK( count, count_rate )
	570	cpu_end_time = REAL( count ) / REAL( count_rate )
	571	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	572	cpu_end_time-cpu_start_time, ' sec'
[1]	573	ENDIF
	574
	575	!
[108]	576	!-- Choose the next cross-section
	577	SELECT CASE ( modus )
	578	CASE ( 'XY' )
	579	modus = 'XZ'
	580	CASE ( 'XZ' )
	581	modus = 'YZ'
	582	CASE ( 'YZ' )
	583	modus = 'no'
	584	END SELECT
[1]	585
[108]	586	ENDDO
[1]	587
	588
	589	!
[108]	590	!-- Combine the 3D-arrays
[493]	591	netcdf_parallel = .FALSE.
[1]	592
	593	!
[493]	594	!-- Info-output
	595	PRINT*, ' '
	596
	597	!
	598	!-- Take current time
	599	CALL SYSTEM_CLOCK( count, count_rate )
	600	cpu_start_time = REAL( count ) / REAL( count_rate )
	601
	602	!
[108]	603	!-- Inquire whether a NetCDF file exists
	604	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	605
	606	!
[108]	607	!-- Inquire whether a NetCDF file for time-averaged data exists
	608	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	609
[108]	610	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	611	netcdf_output = .TRUE.
[493]	612	!
	613	!-- Inquire whether the NetCDF file is already complete (parallel output)
	614	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	615	IF ( netcdf_parallel ) THEN
	616	netcdf_parallel = .TRUE.
	617	ELSE
	618	netcdf_parallel = .FALSE.
	619	ENDIF
[108]	620	ELSE
	621	netcdf_output = .FALSE.
	622	ENDIF
[1]	623
	624	!
[493]	625	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	626	!-- PALM output
	627	IF ( .NOT. netcdf_parallel ) THEN
	628	danz = 0
[1468]	629	WRITE (id_string,'(I6.6)') danz
[493]	630	INQUIRE ( &
	631	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	632	EXIST=found )
	633	ELSE
	634	found = .FALSE.
	635	ENDIF
[1]	636
	637	!
[108]	638	!-- Find out the number of files and open them
[2512]	639	DO WHILE ( found )
[1]	640
[108]	641	OPEN ( danz+110, &
	642	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	643	FORM='UNFORMATTED')
	644	danz = danz + 1
[1468]	645	WRITE (id_string,'(I6.6)') danz
[108]	646	INQUIRE ( &
	647	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	648	EXIST=found )
[1]	649
[108]	650	ENDDO
[1]	651
	652	#if defined( __netcdf )
[493]	653	IF ( netcdf_output ) THEN
	654	IF ( netcdf_parallel ) THEN
	655	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	656	' - merging not neccessary'
	657	ELSE
	658	PRINT*, ' NetCDF output enabled'
	659	ENDIF
	660	ENDIF
[1]	661	#else
	662	IF ( netcdf_output ) THEN
	663	PRINT*, '--- Sorry, no NetCDF support on this host'
	664	netcdf_output = .FALSE.
	665	ENDIF
	666	#endif
[493]	667	IF ( .NOT. netcdf_parallel ) THEN
	668	IF ( danz /= 0 ) THEN
	669	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	670	ELSE
[2512]	671	PRINT*, ' no 3D-data file available'
[108]	672	ENDIF
[1]	673	ENDIF
	674
[493]	675	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	676	#if defined( __netcdf )
[108]	677	DO av = 0, 1
[1]	678
[108]	679	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	680	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	681
	682	!
[108]	683	!-- Open NetCDF dataset
	684	IF ( av == 0 ) THEN
	685	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	686	ELSE
	687	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	688	ENDIF
	689	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	690	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	691
	692
	693	!
[108]	694	!-- Get the list of variables (order of variables corresponds with the
	695	!-- order of data on the binary file)
	696	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	697	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	698	var_list(av) )
	699	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	700
	701	!
[108]	702	!-- Inquire id of the time coordinate variable
	703	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	704	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	705
	706	!
[108]	707	!-- Count number of variables; there is one more semicolon in the
	708	!-- string than variable names
	709	num_var(av) = -1
	710	DO i = 1, LEN( var_list(av) )
	711	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	712	ENDDO
[1]	713
	714	!
[108]	715	!-- Extract the variable names from the list and inquire their NetCDF
	716	!-- IDs
	717	pos = INDEX( var_list(av), ';' )
[1]	718	!
[108]	719	!-- Loop over all variables
	720	DO i = 1, num_var(av)
[1]	721
	722	!
[108]	723	!-- Extract variable name from list
	724	var_list(av) = var_list(av)(pos+1:)
	725	pos = INDEX( var_list(av), ';' )
	726	var_name = var_list(av)(1:pos-1)
[1]	727
	728	!
[108]	729	!-- Get variable ID from name
	730	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	731	id_var(av,i) )
	732	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	733
[108]	734	ENDDO
[1]	735
[108]	736	ENDDO ! av=0,1
[1]	737
[179]	738	#endif
[108]	739	ENDIF
[1]	740
	741	!
[108]	742	!-- Read arrays, until the end of the file is reached
[493]	743	IF ( .NOT. netcdf_parallel ) THEN
[1]	744
[493]	745	current_var = 999999999
	746	fanz = 0
	747	DO WHILE ( danz /= 0 )
	748
[1]	749	!
[493]	750	!-- Loop over all files
	751	DO id = 0, danz-1
[1]	752	!
[2512]	753	!-- File from PE0 contains at the beginning the index bounds
	754	!-- of PALM's total domain.
	755	!-- Allocate the array for storing the total domain data
[493]	756	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
	757	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	758	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
[108]	759	ENDIF
[1]	760
	761	!
[493]	762	!-- Read output time
	763	IF ( netcdf_output .AND. id == 0 ) THEN
	764	IF ( netcdf_1 ) THEN
	765	READ ( id+110, END=999 ) simulated_time, time_step, av
	766	ELSE
[1]	767	!
[493]	768	!-- For compatibility with earlier PALM versions
	769	READ ( id+110, END=999 ) simulated_time, time_step
	770	av = 0
	771	ENDIF
[108]	772	ENDIF
[1]	773
	774	!
[493]	775	!-- Read subdomain indices and grid point values
	776	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	777	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	778	READ ( id+110 ) pf3d_tmp
[210]	779
[493]	780	xxa = MAX( nxa, xa )
	781	xxe = MIN( nxe, xe )
	782	yya = MAX( nya, ya )
	783	yye = MIN( nye, ye )
[1551]	784	DO k = za, ze
[493]	785	DO j = yya, yye
	786	DO i = xxa, xxe
	787	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	788	ENDDO
[210]	789	ENDDO
	790	ENDDO
	791
[493]	792	DEALLOCATE( pf3d_tmp )
	793	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	794
[493]	795	ENDDO
[1]	796
	797	!
[2512]	798	!-- Write data of the total domain in NetCDF format
[493]	799	IF ( netcdf_output ) THEN
[1]	800	#if defined( __netcdf )
	801	!
[493]	802	!-- Check if a new time step has begun; if yes write data to time
	803	!-- axis
	804	IF ( current_var(av) > num_var(av) ) THEN
	805	current_var(av) = 1
	806	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	807	(/ simulated_time /),&
	808	start = (/ time_step /), count = (/ 1 /) )
	809	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	810	ENDIF
[1]	811
	812	!
[493]	813	!-- Now write the data
	814	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
[1551]	815	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
	816	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
[493]	817	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	818
[493]	819	current_var(av) = current_var(av) + 1
[1]	820
	821	#endif
[493]	822	ENDIF
[1]	823
[493]	824	ENDDO
[1]	825
[493]	826	ENDIF
	827
	828	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	829	!
[108]	830	!-- Print the number of arrays processed
	831	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	832	IF ( fanz(1) /= 0 ) THEN
	833	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	834	ENDIF
[1]	835	!
[108]	836	!-- Close all files and deallocate array
	837	DO id = 0, danz-1
	838	CLOSE ( id+110 )
	839	ENDDO
	840	CLOSE ( 2 )
	841	DEALLOCATE ( pf3d )
[1]	842	!
[108]	843	!-- Close the NetCDF file
	844	IF ( netcdf_output ) THEN
[1]	845	#if defined( __netcdf )
[108]	846	IF ( netcdf_0 ) THEN
	847	nc_stat = NF90_CLOSE( id_set(0) )
	848	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	849	ENDIF
	850	IF ( netcdf_1 ) THEN
	851	nc_stat = NF90_CLOSE( id_set(1) )
	852	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	853	ENDIF
	854	#endif
[1]	855	ENDIF
[493]	856
	857	!
	858	!-- Output required cpu time
	859	CALL SYSTEM_CLOCK( count, count_rate )
	860	cpu_end_time = REAL( count ) / REAL( count_rate )
	861	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	862	cpu_end_time-cpu_start_time, ' sec'
	863
[1]	864	ENDIF
	865
[108]	866	ENDDO ! models
[1]	867
[108]	868
[1]	869	CONTAINS
	870
	871
	872	SUBROUTINE handle_netcdf_error( errno )
	873	!
	874	!-- Prints out a text message corresponding to the current NetCDF status
	875
	876	IMPLICIT NONE
	877
	878	INTEGER, INTENT(IN) :: errno
	879
[179]	880	#if defined( __netcdf )
[1]	881	IF ( nc_stat /= NF90_NOERR ) THEN
	882	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	883	TRIM( nf90_strerror( nc_stat ) )
	884	ENDIF
[179]	885	#endif
[1]	886
	887	END SUBROUTINE handle_netcdf_error
	888
	889
	890	END PROGRAM combine_plot_fields
	891
	892
	893

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