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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 3014

Last change on this file since 3014 was 2718, checked in by maronga, 7 years ago
deleting of deprecated files; headers updated where needed
Property svn:keywords set to `Id`
File size: 30.1 KB

Rev	Line
[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
[2696]	4	! This file is part of the PALM model system.
[1046]	5	!
[2696]	6	! PALM is free software: you can redistribute it and/or modify it under the
	7	! terms of the GNU General Public License as published by the Free Software
	8	! Foundation, either version 3 of the License, or (at your option) any later
	9	! version.
[1046]	10	!
	11	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	12	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	13	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	14	!
	15	! You should have received a copy of the GNU General Public License along with
	16	! PALM. If not, see <http://www.gnu.org/licenses/>.
	17	!
[2718]	18	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2696]	19	!------------------------------------------------------------------------------!
[1046]	20	!
[691]	21	! Current revisions:
[1]	22	! -----------------
[1469]	23	!
[2365]	24	!
[226]	25	! Former revisions:
	26	! -----------------
	27	! $Id: combine_plot_fields.f90 2718 2018-01-02 08:49:38Z maronga $
[2716]	28	! Corrected "Former revisions" section
	29	!
	30	! 2696 2017-12-14 17:12:51Z kanani
	31	! Change in file header (GPL part)
	32	!
	33	! 2669 2017-12-06 16:03:27Z raasch
[2669]	34	! data of 3d-nest runs are completely processed now
	35	!
	36	! 2523 2017-10-05 14:42:47Z kanani
[2523]	37	! Increased LEN for CHARACTER variable var_name, equal to the value in PALM
	38	!
	39	! 2512 2017-10-04 08:26:59Z raasch
[2512]	40	! PALM output does not contain ghost layer data any more
	41	! avs- and iso2d-related parts removed, handling of compressed data removed
	42	!
	43	! 2365 2017-08-21 14:59:59Z kanani
[2365]	44	! Vertical grid nesting implemented (SadiqHuq)
[226]	45	!
[2365]	46	! 1809 2016-04-05 20:13:28Z raasch
	47	!
[1809]	48	! 1808 2016-04-05 19:44:00Z raasch
	49	! cpu measurements are done with standard FORTRAN routine on every machine
	50	!
[1552]	51	! 1551 2015-03-03 14:18:16Z maronga
	52	! Adjustments for data output of soil model quantities
	53	!
[1469]	54	! 1468 2014-09-24 14:06:57Z maronga
	55	! Adapted for use on up to 6-digit processor cores (not tested)
	56	!
[1395]	57	! 1394 2014-05-06 10:17:31Z keck
	58	! KIND-attribute added to all INTEGER and REAL declaration statements
	59	!
[1047]	60	! 1046 2012-11-09 14:38:45Z maronga
	61	! code put under GPL (PALM 3.9)
	62	!
[692]	63	! 691 2011-03-04 08:45:30Z maronga
	64	! Bugfix: check for precursor ocean runs, removed typo
	65	!
[494]	66	! 493 2010-03-01 08:30:24Z raasch
	67	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	68	! cpu measurements included
	69	!
[226]	70	! 210 2008-11-06 08:54:02Z raasch
[210]	71	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	72	! all three dimensions), because output of a subset of the data
	73	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	74	! with the INTEL compiler.
[191]	75	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	76	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	77	! Bugfix: three misplaced #endif directives
[1]	78	!
[139]	79	! 114 2007-10-10 00:03:15Z raasch
	80	! Bugfix: model_string needed a default value
	81	!
[114]	82	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	83	! contain modus any longer
	84	!
[1]	85	! 18/01/06 Output of time-averaged data
	86	!
	87	! 25/05/05 Errors removed
	88	!
	89	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	90	! file exists
	91	!
	92	! 31/10/01 All comments and messages translated into English
	93	!
	94	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	95	! Ursprungsversion vom 28/07/97
	96	!
	97	!
	98	! Description:
	99	! ------------
	100	! This routine combines data of the PALM-subdomains into one file. In PALM
	101	! every processor element opens its own file and writes 2D- or 3D-binary-data
	102	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	103	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	104	! to be put into single files, which is done by this routine.
	105	! Output format is NetCDF. Additionally, a data are output in a binary format
	106	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	107	!------------------------------------------------------------------------------!
	108
	109	#if defined( __netcdf )
	110	USE netcdf
	111	#endif
	112
	113	IMPLICIT NONE
	114
	115	!
	116	!-- Local variables
[2669]	117	CHARACTER (LEN=2) :: modus
	118	CHARACTER (LEN=4) :: model_string
[1468]	119	CHARACTER (LEN=6) :: id_string
[2523]	120	CHARACTER (LEN=30) :: dimname, var_name
[1]	121	CHARACTER (LEN=40) :: filename
	122
	123	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	124
[1394]	125	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
[1]	126
[1394]	127	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
	128	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
[2669]	129	nza, nze, pos, time_step, xa, xe, xxa, xxe, ya, ya_do, &
	130	ya_tot, ye, ye_do, ye_tot, yya, yye, za, ze, zza, zze
[1]	131
[1808]	132	INTEGER(8) :: count, count_rate
[493]	133
[1394]	134	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
	135	fanz, id_set, id_var_time, num_var
	136	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
	137	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
	138	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
[1]	139
[2669]	140	LOGICAL :: found, nest3d, netcdf_output, netcdf_parallel, netcdf_0, &
	141	netcdf_1, vnest
[1]	142
[1394]	143	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
	144	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
[191]	145	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	146
[2365]	147
	148
[1]	149	PRINT*, ''
[114]	150	PRINT*, ''
[108]	151	PRINT, ' combine_plot_fields *'
[114]	152
	153	!
[2669]	154	!-- Find out if a coupled or nested run has been carried out
[108]	155	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
[2365]	156	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
[2669]	157	INQUIRE( FILE='3DNESTING', EXIST=nest3d )
[108]	158	IF ( found ) THEN
	159	models = 2
	160	PRINT*, ' coupled run'
[2365]	161	ELSEIF ( vnest ) THEN
	162	models = 2
	163	PRINT*, ' Vertically nested grid coupling'
[2669]	164	ELSEIF ( nest3d ) THEN
	165	OPEN( 90, FILE='3DNESTING', FORM='FORMATTED' )
	166	READ ( 90, '(I2)' ) models
	167	CLOSE ( 90 )
	168	PRINT*, ' 3d-nest run'
	169	PRINT*, ' number of nest domains = ', models
[108]	170	ELSE
	171	models = 1
	172	PRINT*, ' uncoupled run'
	173	ENDIF
[114]	174
	175	!
[691]	176	!-- Find out if a precursor ocean run has been carried out
	177	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
	178	IF ( found ) THEN
	179	model_string = '_O'
	180	PRINT*, ' precursor ocean run'
	181	ELSE
	182	model_string = ''
	183	ENDIF
	184
	185	!
[114]	186	!-- Do everything for each model
[108]	187	DO model = 1, models
[114]	188	!
	189	!-- Set the model string used to identify the filenames
[2669]	190	IF ( found .OR. vnest ) THEN
[108]	191	PRINT*, ''
	192	IF ( model == 2 ) THEN
[2365]	193	IF ( vnest ) THEN
	194	model_string = '_N'
	195	PRINT*, ' now combining FINE data'
	196	PRINT*, ' ========================'
	197	ELSE
	198	model_string = '_O'
	199	PRINT*, ' now combining ocean data'
	200	PRINT*, ' ========================'
	201	ENDIF
[108]	202	ELSE
[2365]	203	IF ( vnest ) THEN
	204	PRINT*, ' now combining COARSE data'
	205	PRINT*, ' ============================='
	206	ELSE
	207	PRINT*, ' now combining atmosphere data'
	208	PRINT*, ' ============================='
	209	ENDIF
[108]	210	ENDIF
[2669]	211	ELSEIF ( nest3d ) THEN
	212	PRINT*, ''
	213	PRINT*, '--> processing nest id = ', model
	214	IF ( model == 1 ) THEN
	215	model_string = ''
	216	ELSE
	217	WRITE( model_string, '(A2,I2.2)' ) '_N', model
	218	ENDIF
[108]	219	ENDIF
[1]	220	!
[108]	221	!-- 2D-arrays for ISO2D
	222	!-- Main loop for the three different cross-sections, starting with
	223	!-- xy-section
	224	modus = 'XY'
	225	PRINT*, ''
	226	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	227	!
[493]	228	!-- Take current time
	229	CALL SYSTEM_CLOCK( count, count_rate )
	230	cpu_start_time = REAL( count ) / REAL( count_rate )
	231
	232	netcdf_parallel = .FALSE.
	233	!
[108]	234	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	235	!-- create any output for this cross-section.
	236	danz = 0
[1468]	237	WRITE (id_string,'(I6.6)') danz
[108]	238	INQUIRE ( &
	239	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	240	EXIST=found )
	241	!
	242	!-- Find out the number of files (equal to the number of PEs which
	243	!-- have been used in PALM) and open them
	244	DO WHILE ( found )
[1]	245
[108]	246	OPEN ( danz+110, &
	247	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	248	FORM='UNFORMATTED' )
	249	danz = danz + 1
[1468]	250	WRITE (id_string,'(I6.6)') danz
[108]	251	INQUIRE ( &
	252	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	253	EXIST=found )
[1]	254
[108]	255	ENDDO
[1]	256
	257	!
[108]	258	!-- Inquire whether a NetCDF file exists
	259	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	260	EXIST=netcdf_0 )
[1]	261
	262	!
[108]	263	!-- Inquire whether a NetCDF file for time-averaged data exists
	264	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	265	EXIST=netcdf_1 )
[1]	266
[108]	267	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	268	netcdf_output = .TRUE.
[493]	269	!
	270	!-- Inquire whether the NetCDF file is already complete (parallel
	271	!-- output)
	272	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	273	EXIST=netcdf_parallel )
	274	IF ( netcdf_parallel ) THEN
	275	netcdf_parallel = .TRUE.
	276	ELSE
	277	netcdf_parallel = .FALSE.
	278	ENDIF
[108]	279	ELSE
	280	netcdf_output = .FALSE.
	281	ENDIF
[1]	282
	283	!
[108]	284	!-- Info-output
	285	PRINT*, ''
[1]	286	#if defined( __netcdf )
[493]	287	IF ( netcdf_output ) THEN
	288	IF ( netcdf_parallel ) THEN
	289	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	290	'(NetCDF4-format) - merging not neccessary'
	291	ELSE
	292	PRINT*, ' NetCDF output enabled'
	293	ENDIF
	294	ENDIF
[1]	295	#else
[108]	296	IF ( netcdf_output ) THEN
	297	PRINT*, '--- Sorry, no NetCDF support on this host'
	298	netcdf_output = .FALSE.
	299	ENDIF
[1]	300	#endif
[493]	301	IF ( .NOT. netcdf_parallel ) THEN
	302	IF ( danz /= 0 ) THEN
	303	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	304	ELSE
	305	PRINT*, ' no ', modus, '-section data available'
	306	ENDIF
[108]	307	ENDIF
[1]	308
[493]	309	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	310	THEN
[1]	311	#if defined( __netcdf )
[108]	312	DO av = 0, 1
[1]	313
[108]	314	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	315	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	316
	317	!
[108]	318	!-- Open NetCDF dataset
	319	IF ( av == 0 ) THEN
	320	filename = 'DATA_2D_'//modus//'_NETCDF' &
	321	//TRIM( model_string )
	322	ELSE
	323	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	324	//TRIM( model_string )
	325	ENDIF
	326	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	327	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	328
	329	!
[108]	330	!-- Get the list of variables (order of variables corresponds with
	331	!-- the order of data on the binary file)
	332	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	333	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	334	var_list(av) )
	335	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	336
	337	!
[108]	338	!-- Inquire id of the time coordinate variable
	339	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	340	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	341
	342	!
[108]	343	!-- Count number of variables; there is one more semicolon in the
	344	!-- string than variable names
	345	num_var(av) = -1
	346	DO i = 1, LEN( var_list(av) )
	347	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	348	ENDDO
[1]	349
	350	!
[108]	351	!-- Extract the variable names from the list and inquire their
	352	!-- NetCDF IDs
	353	pos = INDEX( var_list(av), ';' )
[1]	354	!
[108]	355	!-- Loop over all variables
	356	DO i = 1, num_var(av)
[1]	357
	358	!
[108]	359	!-- Extract variable name from list
	360	var_list(av) = var_list(av)(pos+1:)
	361	pos = INDEX( var_list(av), ';' )
	362	var_name = var_list(av)(1:pos-1)
[1]	363
	364	!
[108]	365	!-- Get variable ID from name
	366	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	367	id_var(av,i) )
	368	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	369
	370	!
[108]	371	!-- Get number of x/y/z levels for that variable
	372	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	373	dimids = id_dims_loc )
	374	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	375	id_dims(av,:) = id_dims_loc
[1]	376
	377	!
[108]	378	!-- Inquire dimension ID
	379	DO j = 1, 4
	380	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	381	id_dims(av,j), dimname, levels(av,i) )
	382	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	383
[108]	384	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	385	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	386	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	387	ENDDO
	388
[1]	389	ENDDO
	390
[108]	391	ENDDO ! av = 0, 1
[1]	392
[179]	393	#endif
[108]	394	ENDIF
[1]	395
	396	!
[108]	397	!-- Read the arrays, as long as the end of the file is reached
[493]	398	IF ( .NOT. netcdf_parallel ) THEN
[1]	399
[493]	400	fanz = 0
	401	current_level = 1
	402	current_var = 999999999
[1]	403
[493]	404	DO WHILE ( danz /= 0 )
	405
[1]	406	!
[493]	407	!-- Loop over all files (reading data of the subdomains)
	408	DO id = 0, danz-1
[1]	409	!
[493]	410	!-- File from PE0 contains special information at the beginning,
	411	!-- concerning the lower and upper indices of the total-domain
[2512]	412	!-- used in PALM (nxa, nxe, nya, nye).
[493]	413	!-- Allocate necessary arrays, open the output file and write
	414	!-- the coordinate informations needed by ISO2D.
	415	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	416
[493]	417	READ ( id+110 ) nxa, nxe, nya, nye
[2512]	418	ALLOCATE ( pf(nxa:nxe,nya:nye) )
[1551]	419	!
	420	!-- Set actual domain bounds to total domain
	421	ya_do = nya
	422	ye_do = nye
	423
[108]	424	ENDIF
[1]	425	!
[493]	426	!-- Read output time
	427	IF ( netcdf_output .AND. id == 0 ) THEN
[2512]	428	READ ( id+110, END=998 ) simulated_time, time_step, av
[108]	429	ENDIF
[1]	430	!
[493]	431	!-- Read subdomain indices
[1551]	432	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
	433
[1]	434	!
[493]	435	!-- IF the PE made no output (in case that no part of the
	436	!-- cross-section is situated on this PE), indices have the
	437	!-- value -1
	438	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	439	ya == -1 .AND. ye == -1 ) ) THEN
[1551]	440
	441
[1]	442	!
[493]	443	!-- Read the subdomain grid-point values
	444	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	445	READ ( id+110 ) pf_tmp
[1551]	446	!
	447	!-- Calculate indices on atmospheric grid (e.g. for soil model
	448	!-- quantities)
	449	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
	450	ye_do = ye - ya
	451	ya_do = ya
	452	pf(xa:xe,ya_do:ye_do) = pf_tmp
	453	ELSE
	454	ye_do = nye
	455	ya_do = nya
	456	pf(xa:xe,ya:ye) = pf_tmp
	457	ENDIF
	458
[493]	459	DEALLOCATE( pf_tmp )
	460	ENDIF
	461	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	462
[493]	463	ENDDO
[1]	464	!
[2512]	465	!-- Write data in NetCDF format
[493]	466	IF ( netcdf_output ) THEN
[1]	467	#if defined( __netcdf )
	468	!
[493]	469	!-- Check if a new time step has begun; if yes write data to
	470	!-- time axis
	471	IF ( current_var(av) > num_var(av) ) THEN
	472	current_var(av) = 1
	473	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	474	(/ simulated_time /), &
	475	start = (/ time_step /), &
	476	count = (/ 1 /) )
	477	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	478	ENDIF
[1]	479
	480	!
[493]	481	!-- Now write the data; this is mode dependent
	482	SELECT CASE ( modus )
[1]	483
[493]	484	CASE ( 'XY' )
	485	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	486	id_var(av,current_var(av)), &
	487	pf(nxa:nxe,nya:nye), &
	488	start = (/ 1, 1, current_level(av), time_step /), &
	489	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	490	IF ( nc_stat /= NF90_NOERR ) THEN
	491	CALL handle_netcdf_error( 8 )
	492	ENDIF
[1]	493
[493]	494	CASE ( 'XZ' )
	495	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	496	id_var(av,current_var(av)), &
[1551]	497	pf(nxa:nxe,ya_do:ye_do), &
[1]	498	start = (/ 1, current_level(av), 1, time_step /), &
[1551]	499	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
[493]	500	IF ( nc_stat /= NF90_NOERR ) THEN
	501	CALL handle_netcdf_error( 9 )
	502	ENDIF
[1]	503
[493]	504	CASE ( 'YZ' )
	505	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	506	id_var(av,current_var(av)), &
[1551]	507	pf(nxa:nxe,ya_do:ye_do), &
[1]	508	start = (/ current_level(av), 1, 1, time_step /), &
[1551]	509	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
[493]	510	IF ( nc_stat /= NF90_NOERR ) THEN
	511	CALL handle_netcdf_error( 10 )
	512	ENDIF
[1]	513
[493]	514	END SELECT
[1]	515
	516	!
[493]	517	!-- Data is written, check if max level is reached
	518	current_level(av) = current_level(av) + 1
	519	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	520	current_level(av) = 1
	521	current_var(av) = current_var(av) + 1
	522	ENDIF
[108]	523
[179]	524	#endif
[493]	525	ENDIF
[1]	526
[493]	527	ENDDO
[1]	528
[493]	529	ENDIF
	530
	531	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	532	!
[108]	533	!-- Print the number of the arrays processed
	534	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	535	IF ( fanz(1) /= 0 ) THEN
	536	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	537	ENDIF
[1]	538
	539	!
[108]	540	!-- Close all files and deallocate arrays
	541	DO id = 0, danz-1
	542	CLOSE ( id+110 )
	543	ENDDO
	544	CLOSE ( 2 )
[2512]	545	DEALLOCATE ( pf )
[1]	546
	547	!
[493]	548	!-- Close the NetCDF file
	549	IF ( netcdf_output ) THEN
[1]	550	#if defined( __netcdf )
[493]	551	IF ( netcdf_0 ) THEN
	552	nc_stat = NF90_CLOSE( id_set(0) )
	553	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	554	ENDIF
	555	IF ( netcdf_1 ) THEN
	556	nc_stat = NF90_CLOSE( id_set(1) )
	557	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	558	ENDIF
	559	#endif
[108]	560	ENDIF
[493]	561	ENDIF
	562
	563	!
	564	!-- Output required cpu time
	565	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	566	CALL SYSTEM_CLOCK( count, count_rate )
	567	cpu_end_time = REAL( count ) / REAL( count_rate )
	568	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	569	cpu_end_time-cpu_start_time, ' sec'
[1]	570	ENDIF
	571
	572	!
[108]	573	!-- Choose the next cross-section
	574	SELECT CASE ( modus )
	575	CASE ( 'XY' )
	576	modus = 'XZ'
	577	CASE ( 'XZ' )
	578	modus = 'YZ'
	579	CASE ( 'YZ' )
	580	modus = 'no'
	581	END SELECT
[1]	582
[108]	583	ENDDO
[1]	584
	585
	586	!
[108]	587	!-- Combine the 3D-arrays
[493]	588	netcdf_parallel = .FALSE.
[1]	589
	590	!
[493]	591	!-- Info-output
	592	PRINT*, ' '
	593
	594	!
	595	!-- Take current time
	596	CALL SYSTEM_CLOCK( count, count_rate )
	597	cpu_start_time = REAL( count ) / REAL( count_rate )
	598
	599	!
[108]	600	!-- Inquire whether a NetCDF file exists
	601	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	602
	603	!
[108]	604	!-- Inquire whether a NetCDF file for time-averaged data exists
	605	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	606
[108]	607	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	608	netcdf_output = .TRUE.
[493]	609	!
	610	!-- Inquire whether the NetCDF file is already complete (parallel output)
	611	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	612	IF ( netcdf_parallel ) THEN
	613	netcdf_parallel = .TRUE.
	614	ELSE
	615	netcdf_parallel = .FALSE.
	616	ENDIF
[108]	617	ELSE
	618	netcdf_output = .FALSE.
	619	ENDIF
[1]	620
	621	!
[493]	622	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	623	!-- PALM output
	624	IF ( .NOT. netcdf_parallel ) THEN
	625	danz = 0
[1468]	626	WRITE (id_string,'(I6.6)') danz
[493]	627	INQUIRE ( &
	628	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	629	EXIST=found )
	630	ELSE
	631	found = .FALSE.
	632	ENDIF
[1]	633
	634	!
[108]	635	!-- Find out the number of files and open them
[2512]	636	DO WHILE ( found )
[1]	637
[108]	638	OPEN ( danz+110, &
	639	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	640	FORM='UNFORMATTED')
	641	danz = danz + 1
[1468]	642	WRITE (id_string,'(I6.6)') danz
[108]	643	INQUIRE ( &
	644	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	645	EXIST=found )
[1]	646
[108]	647	ENDDO
[1]	648
	649	#if defined( __netcdf )
[493]	650	IF ( netcdf_output ) THEN
	651	IF ( netcdf_parallel ) THEN
	652	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	653	' - merging not neccessary'
	654	ELSE
	655	PRINT*, ' NetCDF output enabled'
	656	ENDIF
	657	ENDIF
[1]	658	#else
	659	IF ( netcdf_output ) THEN
	660	PRINT*, '--- Sorry, no NetCDF support on this host'
	661	netcdf_output = .FALSE.
	662	ENDIF
	663	#endif
[493]	664	IF ( .NOT. netcdf_parallel ) THEN
	665	IF ( danz /= 0 ) THEN
	666	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	667	ELSE
[2512]	668	PRINT*, ' no 3D-data file available'
[108]	669	ENDIF
[1]	670	ENDIF
	671
[493]	672	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	673	#if defined( __netcdf )
[108]	674	DO av = 0, 1
[1]	675
[108]	676	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	677	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	678
	679	!
[108]	680	!-- Open NetCDF dataset
	681	IF ( av == 0 ) THEN
	682	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	683	ELSE
	684	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	685	ENDIF
	686	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	687	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	688
	689
	690	!
[108]	691	!-- Get the list of variables (order of variables corresponds with the
	692	!-- order of data on the binary file)
	693	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	694	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	695	var_list(av) )
	696	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	697
	698	!
[108]	699	!-- Inquire id of the time coordinate variable
	700	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	701	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	702
	703	!
[108]	704	!-- Count number of variables; there is one more semicolon in the
	705	!-- string than variable names
	706	num_var(av) = -1
	707	DO i = 1, LEN( var_list(av) )
	708	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	709	ENDDO
[1]	710
	711	!
[108]	712	!-- Extract the variable names from the list and inquire their NetCDF
	713	!-- IDs
	714	pos = INDEX( var_list(av), ';' )
[1]	715	!
[108]	716	!-- Loop over all variables
	717	DO i = 1, num_var(av)
[1]	718
	719	!
[108]	720	!-- Extract variable name from list
	721	var_list(av) = var_list(av)(pos+1:)
	722	pos = INDEX( var_list(av), ';' )
	723	var_name = var_list(av)(1:pos-1)
[1]	724
	725	!
[108]	726	!-- Get variable ID from name
	727	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	728	id_var(av,i) )
	729	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	730
[108]	731	ENDDO
[1]	732
[108]	733	ENDDO ! av=0,1
[1]	734
[179]	735	#endif
[108]	736	ENDIF
[1]	737
	738	!
[108]	739	!-- Read arrays, until the end of the file is reached
[493]	740	IF ( .NOT. netcdf_parallel ) THEN
[1]	741
[493]	742	current_var = 999999999
	743	fanz = 0
	744	DO WHILE ( danz /= 0 )
	745
[1]	746	!
[493]	747	!-- Loop over all files
	748	DO id = 0, danz-1
[1]	749	!
[2512]	750	!-- File from PE0 contains at the beginning the index bounds
	751	!-- of PALM's total domain.
	752	!-- Allocate the array for storing the total domain data
[493]	753	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	754	! READ ( id+110 ) nxag, nxeg, nyag, nyeg
[493]	755	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	756	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
[108]	757	ENDIF
[1]	758
	759	!
[493]	760	!-- Read output time
	761	IF ( netcdf_output .AND. id == 0 ) THEN
	762	IF ( netcdf_1 ) THEN
	763	READ ( id+110, END=999 ) simulated_time, time_step, av
	764	ELSE
[1]	765	!
[493]	766	!-- For compatibility with earlier PALM versions
	767	READ ( id+110, END=999 ) simulated_time, time_step
	768	av = 0
	769	ENDIF
[108]	770	ENDIF
[1]	771
	772	!
[493]	773	!-- Read subdomain indices and grid point values
	774	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	775	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	776	READ ( id+110 ) pf3d_tmp
[210]	777
[493]	778	xxa = MAX( nxa, xa )
	779	xxe = MIN( nxe, xe )
	780	yya = MAX( nya, ya )
	781	yye = MIN( nye, ye )
[1551]	782	DO k = za, ze
[493]	783	DO j = yya, yye
	784	DO i = xxa, xxe
	785	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	786	ENDDO
[210]	787	ENDDO
	788	ENDDO
	789
[493]	790	DEALLOCATE( pf3d_tmp )
	791	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	792
[493]	793	ENDDO
[1]	794
	795	!
[2512]	796	!-- Write data of the total domain in NetCDF format
[493]	797	IF ( netcdf_output ) THEN
[1]	798	#if defined( __netcdf )
	799	!
[493]	800	!-- Check if a new time step has begun; if yes write data to time
	801	!-- axis
	802	IF ( current_var(av) > num_var(av) ) THEN
	803	current_var(av) = 1
	804	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	805	(/ simulated_time /),&
	806	start = (/ time_step /), count = (/ 1 /) )
	807	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	808	ENDIF
[1]	809
	810	!
[493]	811	!-- Now write the data
	812	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
[1551]	813	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
	814	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
[493]	815	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	816
[493]	817	current_var(av) = current_var(av) + 1
[1]	818
	819	#endif
[493]	820	ENDIF
[1]	821
[493]	822	ENDDO
[1]	823
[493]	824	ENDIF
	825
	826	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	827	!
[108]	828	!-- Print the number of arrays processed
	829	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	830	IF ( fanz(1) /= 0 ) THEN
	831	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	832	ENDIF
[1]	833	!
[108]	834	!-- Close all files and deallocate array
	835	DO id = 0, danz-1
	836	CLOSE ( id+110 )
	837	ENDDO
	838	CLOSE ( 2 )
	839	DEALLOCATE ( pf3d )
[1]	840	!
[108]	841	!-- Close the NetCDF file
	842	IF ( netcdf_output ) THEN
[1]	843	#if defined( __netcdf )
[108]	844	IF ( netcdf_0 ) THEN
	845	nc_stat = NF90_CLOSE( id_set(0) )
	846	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	847	ENDIF
	848	IF ( netcdf_1 ) THEN
	849	nc_stat = NF90_CLOSE( id_set(1) )
	850	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	851	ENDIF
	852	#endif
[1]	853	ENDIF
[493]	854
	855	!
	856	!-- Output required cpu time
	857	CALL SYSTEM_CLOCK( count, count_rate )
	858	cpu_end_time = REAL( count ) / REAL( count_rate )
	859	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	860	cpu_end_time-cpu_start_time, ' sec'
	861
[1]	862	ENDIF
	863
[108]	864	ENDDO ! models
[1]	865
[108]	866
[1]	867	CONTAINS
	868
	869
	870	SUBROUTINE handle_netcdf_error( errno )
	871	!
	872	!-- Prints out a text message corresponding to the current NetCDF status
	873
	874	IMPLICIT NONE
	875
	876	INTEGER, INTENT(IN) :: errno
	877
[179]	878	#if defined( __netcdf )
[1]	879	IF ( nc_stat /= NF90_NOERR ) THEN
	880	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	881	TRIM( nf90_strerror( nc_stat ) )
	882	ENDIF
[179]	883	#endif
[1]	884
	885	END SUBROUTINE handle_netcdf_error
	886
	887
	888	END PROGRAM combine_plot_fields
	889
	890
	891

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