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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 2689

Last change on this file since 2689 was 2669, checked in by raasch, 7 years ago
file attributes and activation strings in .palm.iofiles revised, file extensions for nesting, masked output, wind turbine data, etc. changed
Property svn:keywords set to `Id`
File size: 29.9 KB

Rev	Line
[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
[1046]	4	! This file is part of PALM.
	5	!
	6	! PALM is free software: you can redistribute it and/or modify it under the terms
	7	! of the GNU General Public License as published by the Free Software Foundation,
	8	! either version 3 of the License, or (at your option) any later version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[1310]	17	! Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	18	!--------------------------------------------------------------------------------!
	19	!
[691]	20	! Current revisions:
[1]	21	! -----------------
[1469]	22	!
[2365]	23	!
[226]	24	! Former revisions:
	25	! -----------------
	26	! $Id: combine_plot_fields.f90 2669 2017-12-06 16:03:27Z Giersch $
[2669]	27	! data of 3d-nest runs are completely processed now
	28	!
	29	! 2523 2017-10-05 14:42:47Z kanani
[2523]	30	! Increased LEN for CHARACTER variable var_name, equal to the value in PALM
	31	!
	32	! 2512 2017-10-04 08:26:59Z raasch
[2512]	33	! PALM output does not contain ghost layer data any more
	34	! avs- and iso2d-related parts removed, handling of compressed data removed
	35	!
	36	! 2365 2017-08-21 14:59:59Z kanani
[2365]	37	! Vertical grid nesting implemented (SadiqHuq)
[226]	38	!
[2365]	39	! 1809 2016-04-05 20:13:28Z raasch
	40	!
[1809]	41	! 1808 2016-04-05 19:44:00Z raasch
	42	! cpu measurements are done with standard FORTRAN routine on every machine
	43	!
[1552]	44	! 1551 2015-03-03 14:18:16Z maronga
	45	! Adjustments for data output of soil model quantities
	46	!
[1469]	47	! 1468 2014-09-24 14:06:57Z maronga
	48	! Adapted for use on up to 6-digit processor cores (not tested)
	49	!
[1395]	50	! 1394 2014-05-06 10:17:31Z keck
	51	! KIND-attribute added to all INTEGER and REAL declaration statements
	52	!
[1047]	53	! 1046 2012-11-09 14:38:45Z maronga
	54	! code put under GPL (PALM 3.9)
	55	!
[692]	56	! 691 2011-03-04 08:45:30Z maronga
	57	! Bugfix: check for precursor ocean runs, removed typo
	58	!
[494]	59	! 493 2010-03-01 08:30:24Z raasch
	60	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	61	! cpu measurements included
	62	!
[226]	63	! 210 2008-11-06 08:54:02Z raasch
[210]	64	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	65	! all three dimensions), because output of a subset of the data
	66	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	67	! with the INTEL compiler.
[191]	68	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	69	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	70	! Bugfix: three misplaced #endif directives
[1]	71	!
[139]	72	! 114 2007-10-10 00:03:15Z raasch
	73	! Bugfix: model_string needed a default value
	74	!
[114]	75	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	76	! contain modus any longer
	77	!
[1]	78	! 18/01/06 Output of time-averaged data
	79	!
	80	! 25/05/05 Errors removed
	81	!
	82	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	83	! file exists
	84	!
	85	! 31/10/01 All comments and messages translated into English
	86	!
	87	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	88	! Ursprungsversion vom 28/07/97
	89	!
	90	!
	91	! Description:
	92	! ------------
	93	! This routine combines data of the PALM-subdomains into one file. In PALM
	94	! every processor element opens its own file and writes 2D- or 3D-binary-data
	95	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	96	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	97	! to be put into single files, which is done by this routine.
	98	! Output format is NetCDF. Additionally, a data are output in a binary format
	99	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	100	!------------------------------------------------------------------------------!
	101
	102	#if defined( __netcdf )
	103	USE netcdf
	104	#endif
	105
	106	IMPLICIT NONE
	107
	108	!
	109	!-- Local variables
[2669]	110	CHARACTER (LEN=2) :: modus
	111	CHARACTER (LEN=4) :: model_string
[1468]	112	CHARACTER (LEN=6) :: id_string
[2523]	113	CHARACTER (LEN=30) :: dimname, var_name
[1]	114	CHARACTER (LEN=40) :: filename
	115
	116	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	117
[1394]	118	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
[1]	119
[1394]	120	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
	121	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
[2669]	122	nza, nze, pos, time_step, xa, xe, xxa, xxe, ya, ya_do, &
	123	ya_tot, ye, ye_do, ye_tot, yya, yye, za, ze, zza, zze
[1]	124
[1808]	125	INTEGER(8) :: count, count_rate
[493]	126
[1394]	127	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
	128	fanz, id_set, id_var_time, num_var
	129	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
	130	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
	131	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
[1]	132
[2669]	133	LOGICAL :: found, nest3d, netcdf_output, netcdf_parallel, netcdf_0, &
	134	netcdf_1, vnest
[1]	135
[1394]	136	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
	137	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
[191]	138	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	139
[2365]	140
	141
[1]	142	PRINT*, ''
[114]	143	PRINT*, ''
[108]	144	PRINT, ' combine_plot_fields *'
[114]	145
	146	!
[2669]	147	!-- Find out if a coupled or nested run has been carried out
[108]	148	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
[2365]	149	INQUIRE( FILE='VNESTING_PORT_OPENED', EXIST=vnest )
[2669]	150	INQUIRE( FILE='3DNESTING', EXIST=nest3d )
[108]	151	IF ( found ) THEN
	152	models = 2
	153	PRINT*, ' coupled run'
[2365]	154	ELSEIF ( vnest ) THEN
	155	models = 2
	156	PRINT*, ' Vertically nested grid coupling'
[2669]	157	ELSEIF ( nest3d ) THEN
	158	OPEN( 90, FILE='3DNESTING', FORM='FORMATTED' )
	159	READ ( 90, '(I2)' ) models
	160	CLOSE ( 90 )
	161	PRINT*, ' 3d-nest run'
	162	PRINT*, ' number of nest domains = ', models
[108]	163	ELSE
	164	models = 1
	165	PRINT*, ' uncoupled run'
	166	ENDIF
[114]	167
	168	!
[691]	169	!-- Find out if a precursor ocean run has been carried out
	170	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
	171	IF ( found ) THEN
	172	model_string = '_O'
	173	PRINT*, ' precursor ocean run'
	174	ELSE
	175	model_string = ''
	176	ENDIF
	177
	178	!
[114]	179	!-- Do everything for each model
[108]	180	DO model = 1, models
[114]	181	!
	182	!-- Set the model string used to identify the filenames
[2669]	183	IF ( found .OR. vnest ) THEN
[108]	184	PRINT*, ''
	185	IF ( model == 2 ) THEN
[2365]	186	IF ( vnest ) THEN
	187	model_string = '_N'
	188	PRINT*, ' now combining FINE data'
	189	PRINT*, ' ========================'
	190	ELSE
	191	model_string = '_O'
	192	PRINT*, ' now combining ocean data'
	193	PRINT*, ' ========================'
	194	ENDIF
[108]	195	ELSE
[2365]	196	IF ( vnest ) THEN
	197	PRINT*, ' now combining COARSE data'
	198	PRINT*, ' ============================='
	199	ELSE
	200	PRINT*, ' now combining atmosphere data'
	201	PRINT*, ' ============================='
	202	ENDIF
[108]	203	ENDIF
[2669]	204	ELSEIF ( nest3d ) THEN
	205	PRINT*, ''
	206	PRINT*, '--> processing nest id = ', model
	207	IF ( model == 1 ) THEN
	208	model_string = ''
	209	ELSE
	210	WRITE( model_string, '(A2,I2.2)' ) '_N', model
	211	ENDIF
[108]	212	ENDIF
[1]	213	!
[108]	214	!-- 2D-arrays for ISO2D
	215	!-- Main loop for the three different cross-sections, starting with
	216	!-- xy-section
	217	modus = 'XY'
	218	PRINT*, ''
	219	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	220	!
[493]	221	!-- Take current time
	222	CALL SYSTEM_CLOCK( count, count_rate )
	223	cpu_start_time = REAL( count ) / REAL( count_rate )
	224
	225	netcdf_parallel = .FALSE.
	226	!
[108]	227	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	228	!-- create any output for this cross-section.
	229	danz = 0
[1468]	230	WRITE (id_string,'(I6.6)') danz
[108]	231	INQUIRE ( &
	232	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	233	EXIST=found )
	234	!
	235	!-- Find out the number of files (equal to the number of PEs which
	236	!-- have been used in PALM) and open them
	237	DO WHILE ( found )
[1]	238
[108]	239	OPEN ( danz+110, &
	240	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	241	FORM='UNFORMATTED' )
	242	danz = danz + 1
[1468]	243	WRITE (id_string,'(I6.6)') danz
[108]	244	INQUIRE ( &
	245	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	246	EXIST=found )
[1]	247
[108]	248	ENDDO
[1]	249
	250	!
[108]	251	!-- Inquire whether a NetCDF file exists
	252	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	253	EXIST=netcdf_0 )
[1]	254
	255	!
[108]	256	!-- Inquire whether a NetCDF file for time-averaged data exists
	257	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	258	EXIST=netcdf_1 )
[1]	259
[108]	260	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	261	netcdf_output = .TRUE.
[493]	262	!
	263	!-- Inquire whether the NetCDF file is already complete (parallel
	264	!-- output)
	265	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	266	EXIST=netcdf_parallel )
	267	IF ( netcdf_parallel ) THEN
	268	netcdf_parallel = .TRUE.
	269	ELSE
	270	netcdf_parallel = .FALSE.
	271	ENDIF
[108]	272	ELSE
	273	netcdf_output = .FALSE.
	274	ENDIF
[1]	275
	276	!
[108]	277	!-- Info-output
	278	PRINT*, ''
[1]	279	#if defined( __netcdf )
[493]	280	IF ( netcdf_output ) THEN
	281	IF ( netcdf_parallel ) THEN
	282	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	283	'(NetCDF4-format) - merging not neccessary'
	284	ELSE
	285	PRINT*, ' NetCDF output enabled'
	286	ENDIF
	287	ENDIF
[1]	288	#else
[108]	289	IF ( netcdf_output ) THEN
	290	PRINT*, '--- Sorry, no NetCDF support on this host'
	291	netcdf_output = .FALSE.
	292	ENDIF
[1]	293	#endif
[493]	294	IF ( .NOT. netcdf_parallel ) THEN
	295	IF ( danz /= 0 ) THEN
	296	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	297	ELSE
	298	PRINT*, ' no ', modus, '-section data available'
	299	ENDIF
[108]	300	ENDIF
[1]	301
[493]	302	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	303	THEN
[1]	304	#if defined( __netcdf )
[108]	305	DO av = 0, 1
[1]	306
[108]	307	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	308	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	309
	310	!
[108]	311	!-- Open NetCDF dataset
	312	IF ( av == 0 ) THEN
	313	filename = 'DATA_2D_'//modus//'_NETCDF' &
	314	//TRIM( model_string )
	315	ELSE
	316	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	317	//TRIM( model_string )
	318	ENDIF
	319	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	320	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	321
	322	!
[108]	323	!-- Get the list of variables (order of variables corresponds with
	324	!-- the order of data on the binary file)
	325	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	326	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	327	var_list(av) )
	328	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	329
	330	!
[108]	331	!-- Inquire id of the time coordinate variable
	332	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	333	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	334
	335	!
[108]	336	!-- Count number of variables; there is one more semicolon in the
	337	!-- string than variable names
	338	num_var(av) = -1
	339	DO i = 1, LEN( var_list(av) )
	340	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	341	ENDDO
[1]	342
	343	!
[108]	344	!-- Extract the variable names from the list and inquire their
	345	!-- NetCDF IDs
	346	pos = INDEX( var_list(av), ';' )
[1]	347	!
[108]	348	!-- Loop over all variables
	349	DO i = 1, num_var(av)
[1]	350
	351	!
[108]	352	!-- Extract variable name from list
	353	var_list(av) = var_list(av)(pos+1:)
	354	pos = INDEX( var_list(av), ';' )
	355	var_name = var_list(av)(1:pos-1)
[1]	356
	357	!
[108]	358	!-- Get variable ID from name
	359	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	360	id_var(av,i) )
	361	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	362
	363	!
[108]	364	!-- Get number of x/y/z levels for that variable
	365	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	366	dimids = id_dims_loc )
	367	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	368	id_dims(av,:) = id_dims_loc
[1]	369
	370	!
[108]	371	!-- Inquire dimension ID
	372	DO j = 1, 4
	373	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	374	id_dims(av,j), dimname, levels(av,i) )
	375	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	376
[108]	377	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	378	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	379	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	380	ENDDO
	381
[1]	382	ENDDO
	383
[108]	384	ENDDO ! av = 0, 1
[1]	385
[179]	386	#endif
[108]	387	ENDIF
[1]	388
	389	!
[108]	390	!-- Read the arrays, as long as the end of the file is reached
[493]	391	IF ( .NOT. netcdf_parallel ) THEN
[1]	392
[493]	393	fanz = 0
	394	current_level = 1
	395	current_var = 999999999
[1]	396
[493]	397	DO WHILE ( danz /= 0 )
	398
[1]	399	!
[493]	400	!-- Loop over all files (reading data of the subdomains)
	401	DO id = 0, danz-1
[1]	402	!
[493]	403	!-- File from PE0 contains special information at the beginning,
	404	!-- concerning the lower and upper indices of the total-domain
[2512]	405	!-- used in PALM (nxa, nxe, nya, nye).
[493]	406	!-- Allocate necessary arrays, open the output file and write
	407	!-- the coordinate informations needed by ISO2D.
	408	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	409
[493]	410	READ ( id+110 ) nxa, nxe, nya, nye
[2512]	411	ALLOCATE ( pf(nxa:nxe,nya:nye) )
[1551]	412	!
	413	!-- Set actual domain bounds to total domain
	414	ya_do = nya
	415	ye_do = nye
	416
[108]	417	ENDIF
[1]	418	!
[493]	419	!-- Read output time
	420	IF ( netcdf_output .AND. id == 0 ) THEN
[2512]	421	READ ( id+110, END=998 ) simulated_time, time_step, av
[108]	422	ENDIF
[1]	423	!
[493]	424	!-- Read subdomain indices
[1551]	425	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
	426
[1]	427	!
[493]	428	!-- IF the PE made no output (in case that no part of the
	429	!-- cross-section is situated on this PE), indices have the
	430	!-- value -1
	431	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	432	ya == -1 .AND. ye == -1 ) ) THEN
[1551]	433
	434
[1]	435	!
[493]	436	!-- Read the subdomain grid-point values
	437	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	438	READ ( id+110 ) pf_tmp
[1551]	439	!
	440	!-- Calculate indices on atmospheric grid (e.g. for soil model
	441	!-- quantities)
	442	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
	443	ye_do = ye - ya
	444	ya_do = ya
	445	pf(xa:xe,ya_do:ye_do) = pf_tmp
	446	ELSE
	447	ye_do = nye
	448	ya_do = nya
	449	pf(xa:xe,ya:ye) = pf_tmp
	450	ENDIF
	451
[493]	452	DEALLOCATE( pf_tmp )
	453	ENDIF
	454	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	455
[493]	456	ENDDO
[1]	457	!
[2512]	458	!-- Write data in NetCDF format
[493]	459	IF ( netcdf_output ) THEN
[1]	460	#if defined( __netcdf )
	461	!
[493]	462	!-- Check if a new time step has begun; if yes write data to
	463	!-- time axis
	464	IF ( current_var(av) > num_var(av) ) THEN
	465	current_var(av) = 1
	466	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	467	(/ simulated_time /), &
	468	start = (/ time_step /), &
	469	count = (/ 1 /) )
	470	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	471	ENDIF
[1]	472
	473	!
[493]	474	!-- Now write the data; this is mode dependent
	475	SELECT CASE ( modus )
[1]	476
[493]	477	CASE ( 'XY' )
	478	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	479	id_var(av,current_var(av)), &
	480	pf(nxa:nxe,nya:nye), &
	481	start = (/ 1, 1, current_level(av), time_step /), &
	482	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	483	IF ( nc_stat /= NF90_NOERR ) THEN
	484	CALL handle_netcdf_error( 8 )
	485	ENDIF
[1]	486
[493]	487	CASE ( 'XZ' )
	488	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	489	id_var(av,current_var(av)), &
[1551]	490	pf(nxa:nxe,ya_do:ye_do), &
[1]	491	start = (/ 1, current_level(av), 1, time_step /), &
[1551]	492	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
[493]	493	IF ( nc_stat /= NF90_NOERR ) THEN
	494	CALL handle_netcdf_error( 9 )
	495	ENDIF
[1]	496
[493]	497	CASE ( 'YZ' )
	498	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	499	id_var(av,current_var(av)), &
[1551]	500	pf(nxa:nxe,ya_do:ye_do), &
[1]	501	start = (/ current_level(av), 1, 1, time_step /), &
[1551]	502	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
[493]	503	IF ( nc_stat /= NF90_NOERR ) THEN
	504	CALL handle_netcdf_error( 10 )
	505	ENDIF
[1]	506
[493]	507	END SELECT
[1]	508
	509	!
[493]	510	!-- Data is written, check if max level is reached
	511	current_level(av) = current_level(av) + 1
	512	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	513	current_level(av) = 1
	514	current_var(av) = current_var(av) + 1
	515	ENDIF
[108]	516
[179]	517	#endif
[493]	518	ENDIF
[1]	519
[493]	520	ENDDO
[1]	521
[493]	522	ENDIF
	523
	524	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	525	!
[108]	526	!-- Print the number of the arrays processed
	527	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	528	IF ( fanz(1) /= 0 ) THEN
	529	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	530	ENDIF
[1]	531
	532	!
[108]	533	!-- Close all files and deallocate arrays
	534	DO id = 0, danz-1
	535	CLOSE ( id+110 )
	536	ENDDO
	537	CLOSE ( 2 )
[2512]	538	DEALLOCATE ( pf )
[1]	539
	540	!
[493]	541	!-- Close the NetCDF file
	542	IF ( netcdf_output ) THEN
[1]	543	#if defined( __netcdf )
[493]	544	IF ( netcdf_0 ) THEN
	545	nc_stat = NF90_CLOSE( id_set(0) )
	546	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	547	ENDIF
	548	IF ( netcdf_1 ) THEN
	549	nc_stat = NF90_CLOSE( id_set(1) )
	550	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	551	ENDIF
	552	#endif
[108]	553	ENDIF
[493]	554	ENDIF
	555
	556	!
	557	!-- Output required cpu time
	558	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	559	CALL SYSTEM_CLOCK( count, count_rate )
	560	cpu_end_time = REAL( count ) / REAL( count_rate )
	561	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	562	cpu_end_time-cpu_start_time, ' sec'
[1]	563	ENDIF
	564
	565	!
[108]	566	!-- Choose the next cross-section
	567	SELECT CASE ( modus )
	568	CASE ( 'XY' )
	569	modus = 'XZ'
	570	CASE ( 'XZ' )
	571	modus = 'YZ'
	572	CASE ( 'YZ' )
	573	modus = 'no'
	574	END SELECT
[1]	575
[108]	576	ENDDO
[1]	577
	578
	579	!
[108]	580	!-- Combine the 3D-arrays
[493]	581	netcdf_parallel = .FALSE.
[1]	582
	583	!
[493]	584	!-- Info-output
	585	PRINT*, ' '
	586
	587	!
	588	!-- Take current time
	589	CALL SYSTEM_CLOCK( count, count_rate )
	590	cpu_start_time = REAL( count ) / REAL( count_rate )
	591
	592	!
[108]	593	!-- Inquire whether a NetCDF file exists
	594	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	595
	596	!
[108]	597	!-- Inquire whether a NetCDF file for time-averaged data exists
	598	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	599
[108]	600	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	601	netcdf_output = .TRUE.
[493]	602	!
	603	!-- Inquire whether the NetCDF file is already complete (parallel output)
	604	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	605	IF ( netcdf_parallel ) THEN
	606	netcdf_parallel = .TRUE.
	607	ELSE
	608	netcdf_parallel = .FALSE.
	609	ENDIF
[108]	610	ELSE
	611	netcdf_output = .FALSE.
	612	ENDIF
[1]	613
	614	!
[493]	615	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	616	!-- PALM output
	617	IF ( .NOT. netcdf_parallel ) THEN
	618	danz = 0
[1468]	619	WRITE (id_string,'(I6.6)') danz
[493]	620	INQUIRE ( &
	621	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	622	EXIST=found )
	623	ELSE
	624	found = .FALSE.
	625	ENDIF
[1]	626
	627	!
[108]	628	!-- Find out the number of files and open them
[2512]	629	DO WHILE ( found )
[1]	630
[108]	631	OPEN ( danz+110, &
	632	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	633	FORM='UNFORMATTED')
	634	danz = danz + 1
[1468]	635	WRITE (id_string,'(I6.6)') danz
[108]	636	INQUIRE ( &
	637	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	638	EXIST=found )
[1]	639
[108]	640	ENDDO
[1]	641
	642	#if defined( __netcdf )
[493]	643	IF ( netcdf_output ) THEN
	644	IF ( netcdf_parallel ) THEN
	645	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	646	' - merging not neccessary'
	647	ELSE
	648	PRINT*, ' NetCDF output enabled'
	649	ENDIF
	650	ENDIF
[1]	651	#else
	652	IF ( netcdf_output ) THEN
	653	PRINT*, '--- Sorry, no NetCDF support on this host'
	654	netcdf_output = .FALSE.
	655	ENDIF
	656	#endif
[493]	657	IF ( .NOT. netcdf_parallel ) THEN
	658	IF ( danz /= 0 ) THEN
	659	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	660	ELSE
[2512]	661	PRINT*, ' no 3D-data file available'
[108]	662	ENDIF
[1]	663	ENDIF
	664
[493]	665	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	666	#if defined( __netcdf )
[108]	667	DO av = 0, 1
[1]	668
[108]	669	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	670	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	671
	672	!
[108]	673	!-- Open NetCDF dataset
	674	IF ( av == 0 ) THEN
	675	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	676	ELSE
	677	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	678	ENDIF
	679	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	680	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	681
	682
	683	!
[108]	684	!-- Get the list of variables (order of variables corresponds with the
	685	!-- order of data on the binary file)
	686	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	687	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	688	var_list(av) )
	689	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	690
	691	!
[108]	692	!-- Inquire id of the time coordinate variable
	693	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	694	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	695
	696	!
[108]	697	!-- Count number of variables; there is one more semicolon in the
	698	!-- string than variable names
	699	num_var(av) = -1
	700	DO i = 1, LEN( var_list(av) )
	701	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	702	ENDDO
[1]	703
	704	!
[108]	705	!-- Extract the variable names from the list and inquire their NetCDF
	706	!-- IDs
	707	pos = INDEX( var_list(av), ';' )
[1]	708	!
[108]	709	!-- Loop over all variables
	710	DO i = 1, num_var(av)
[1]	711
	712	!
[108]	713	!-- Extract variable name from list
	714	var_list(av) = var_list(av)(pos+1:)
	715	pos = INDEX( var_list(av), ';' )
	716	var_name = var_list(av)(1:pos-1)
[1]	717
	718	!
[108]	719	!-- Get variable ID from name
	720	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	721	id_var(av,i) )
	722	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	723
[108]	724	ENDDO
[1]	725
[108]	726	ENDDO ! av=0,1
[1]	727
[179]	728	#endif
[108]	729	ENDIF
[1]	730
	731	!
[108]	732	!-- Read arrays, until the end of the file is reached
[493]	733	IF ( .NOT. netcdf_parallel ) THEN
[1]	734
[493]	735	current_var = 999999999
	736	fanz = 0
	737	DO WHILE ( danz /= 0 )
	738
[1]	739	!
[493]	740	!-- Loop over all files
	741	DO id = 0, danz-1
[1]	742	!
[2512]	743	!-- File from PE0 contains at the beginning the index bounds
	744	!-- of PALM's total domain.
	745	!-- Allocate the array for storing the total domain data
[493]	746	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[2512]	747	! READ ( id+110 ) nxag, nxeg, nyag, nyeg
[493]	748	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	749	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
[108]	750	ENDIF
[1]	751
	752	!
[493]	753	!-- Read output time
	754	IF ( netcdf_output .AND. id == 0 ) THEN
	755	IF ( netcdf_1 ) THEN
	756	READ ( id+110, END=999 ) simulated_time, time_step, av
	757	ELSE
[1]	758	!
[493]	759	!-- For compatibility with earlier PALM versions
	760	READ ( id+110, END=999 ) simulated_time, time_step
	761	av = 0
	762	ENDIF
[108]	763	ENDIF
[1]	764
	765	!
[493]	766	!-- Read subdomain indices and grid point values
	767	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	768	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	769	READ ( id+110 ) pf3d_tmp
[210]	770
[493]	771	xxa = MAX( nxa, xa )
	772	xxe = MIN( nxe, xe )
	773	yya = MAX( nya, ya )
	774	yye = MIN( nye, ye )
[1551]	775	DO k = za, ze
[493]	776	DO j = yya, yye
	777	DO i = xxa, xxe
	778	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	779	ENDDO
[210]	780	ENDDO
	781	ENDDO
	782
[493]	783	DEALLOCATE( pf3d_tmp )
	784	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	785
[493]	786	ENDDO
[1]	787
	788	!
[2512]	789	!-- Write data of the total domain in NetCDF format
[493]	790	IF ( netcdf_output ) THEN
[1]	791	#if defined( __netcdf )
	792	!
[493]	793	!-- Check if a new time step has begun; if yes write data to time
	794	!-- axis
	795	IF ( current_var(av) > num_var(av) ) THEN
	796	current_var(av) = 1
	797	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	798	(/ simulated_time /),&
	799	start = (/ time_step /), count = (/ 1 /) )
	800	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	801	ENDIF
[1]	802
	803	!
[493]	804	!-- Now write the data
	805	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
[1551]	806	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
	807	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
[493]	808	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	809
[493]	810	current_var(av) = current_var(av) + 1
[1]	811
	812	#endif
[493]	813	ENDIF
[1]	814
[493]	815	ENDDO
[1]	816
[493]	817	ENDIF
	818
	819	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	820	!
[108]	821	!-- Print the number of arrays processed
	822	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	823	IF ( fanz(1) /= 0 ) THEN
	824	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	825	ENDIF
[1]	826	!
[108]	827	!-- Close all files and deallocate array
	828	DO id = 0, danz-1
	829	CLOSE ( id+110 )
	830	ENDDO
	831	CLOSE ( 2 )
	832	DEALLOCATE ( pf3d )
[1]	833	!
[108]	834	!-- Close the NetCDF file
	835	IF ( netcdf_output ) THEN
[1]	836	#if defined( __netcdf )
[108]	837	IF ( netcdf_0 ) THEN
	838	nc_stat = NF90_CLOSE( id_set(0) )
	839	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	840	ENDIF
	841	IF ( netcdf_1 ) THEN
	842	nc_stat = NF90_CLOSE( id_set(1) )
	843	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	844	ENDIF
	845	#endif
[1]	846	ENDIF
[493]	847
	848	!
	849	!-- Output required cpu time
	850	CALL SYSTEM_CLOCK( count, count_rate )
	851	cpu_end_time = REAL( count ) / REAL( count_rate )
	852	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	853	cpu_end_time-cpu_start_time, ' sec'
	854
[1]	855	ENDIF
	856
[108]	857	ENDDO ! models
[1]	858
[108]	859
[1]	860	CONTAINS
	861
	862
	863	SUBROUTINE handle_netcdf_error( errno )
	864	!
	865	!-- Prints out a text message corresponding to the current NetCDF status
	866
	867	IMPLICIT NONE
	868
	869	INTEGER, INTENT(IN) :: errno
	870
[179]	871	#if defined( __netcdf )
[1]	872	IF ( nc_stat /= NF90_NOERR ) THEN
	873	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	874	TRIM( nf90_strerror( nc_stat ) )
	875	ENDIF
[179]	876	#endif
[1]	877
	878	END SUBROUTINE handle_netcdf_error
	879
	880
	881	END PROGRAM combine_plot_fields
	882
	883
	884

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