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source: palm/trunk/UTIL/combine_plot_fields.f90 @ 2210

Last change on this file since 2210 was 1809, checked in by raasch, 9 years ago
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[1]	1	PROGRAM combine_plot_fields
	2
	3	!------------------------------------------------------------------------------!
[1046]	4	! This file is part of PALM.
	5	!
	6	! PALM is free software: you can redistribute it and/or modify it under the terms
	7	! of the GNU General Public License as published by the Free Software Foundation,
	8	! either version 3 of the License, or (at your option) any later version.
	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[1310]	17	! Copyright 1997-2014 Leibniz Universitaet Hannover
[1046]	18	!--------------------------------------------------------------------------------!
	19	!
[691]	20	! Current revisions:
[1]	21	! -----------------
[1469]	22	!
[1809]	23	!
[226]	24	! Former revisions:
	25	! -----------------
	26	! $Id: combine_plot_fields.f90 1809 2016-04-05 20:13:28Z kanani $
	27	!
[1809]	28	! 1808 2016-04-05 19:44:00Z raasch
	29	! cpu measurements are done with standard FORTRAN routine on every machine
	30	!
[1552]	31	! 1551 2015-03-03 14:18:16Z maronga
	32	! Adjustments for data output of soil model quantities
	33	!
[1469]	34	! 1468 2014-09-24 14:06:57Z maronga
	35	! Adapted for use on up to 6-digit processor cores (not tested)
	36	!
[1395]	37	! 1394 2014-05-06 10:17:31Z keck
	38	! KIND-attribute added to all INTEGER and REAL declaration statements
	39	!
[1047]	40	! 1046 2012-11-09 14:38:45Z maronga
	41	! code put under GPL (PALM 3.9)
	42	!
[692]	43	! 691 2011-03-04 08:45:30Z maronga
	44	! Bugfix: check for precursor ocean runs, removed typo
	45	!
[494]	46	! 493 2010-03-01 08:30:24Z raasch
	47	! Exit in case of already complete NetCDF data (due to parallel output in PALM)
	48	! cpu measurements included
	49	!
[226]	50	! 210 2008-11-06 08:54:02Z raasch
[210]	51	! Size of pf3d adjusted to the required output size (1 gridpoint less, along
	52	! all three dimensions), because output of a subset of the data
	53	! (pf3d(nxa:nxe...) in the NF90_PUT_VAR statement caused segmentation fault
	54	! with the INTEL compiler.
[191]	55	! Subdomain data are read into temporary arrays pf_tmp/pf3d_tmp in order to
	56	! avoid INTEL compiler warnings about (automatic) creation of temporary arrays
[179]	57	! Bugfix: three misplaced #endif directives
[1]	58	!
[139]	59	! 114 2007-10-10 00:03:15Z raasch
	60	! Bugfix: model_string needed a default value
	61	!
[114]	62	! Aug 07 Loop for processing of output by coupled runs, id_string does not
	63	! contain modus any longer
	64	!
[1]	65	! 18/01/06 Output of time-averaged data
	66	!
	67	! 25/05/05 Errors removed
	68	!
	69	! 26/04/05 Output in NetCDF format, iso2d and avs output only if parameter
	70	! file exists
	71	!
	72	! 31/10/01 All comments and messages translated into English
	73	!
	74	! 23/02/99 Keine Bearbeitung komprimierter 3D-Daten
	75	! Ursprungsversion vom 28/07/97
	76	!
	77	!
	78	! Description:
	79	! ------------
	80	! This routine combines data of the PALM-subdomains into one file. In PALM
	81	! every processor element opens its own file and writes 2D- or 3D-binary-data
	82	! into it (different files are opened for xy-, xz-, yz-cross-sections and
	83	! 3D-data). For plotting or analyzing these PE-data have to be collected and
	84	! to be put into single files, which is done by this routine.
	85	! Output format is NetCDF. Additionally, a data are output in a binary format
	86	! readable by ISO2D-software (cross-sections) and by AVS (3D-data).
	87	!------------------------------------------------------------------------------!
	88
	89	#if defined( __netcdf )
	90	USE netcdf
	91	#endif
	92
	93	IMPLICIT NONE
	94
	95	!
	96	!-- Local variables
[108]	97	CHARACTER (LEN=2) :: modus, model_string
[1468]	98	CHARACTER (LEN=6) :: id_string
[1551]	99	CHARACTER (LEN=20) :: dimname, var_name
[1]	100	CHARACTER (LEN=40) :: filename
	101
	102	CHARACTER (LEN=2000), DIMENSION(0:1) :: var_list
	103
[1394]	104	INTEGER, PARAMETER :: iwp = 4, spk = SELECTED_REAL_KIND( 6 ), wp = 8
[1]	105
[1394]	106	INTEGER(iwp) :: av, danz, i, id, j, k, model, models, nc_stat, &
	107	nxa, nxag, nxe, nxeg, nya, nyag, nye, nyeg, &
[1551]	108	nza, nze, pos, time_step, &
	109	xa, xe, xxa, xxe, ya, ya_do, ya_tot, ye, ye_do, ye_tot, yya, yye, za, &
	110	ze, zza, zze
[1]	111
[1808]	112	INTEGER(8) :: count, count_rate
[493]	113
[1394]	114	INTEGER(iwp), DIMENSION(0:1) :: current_level, current_var, &
	115	fanz, id_set, id_var_time, num_var
	116	INTEGER(iwp), DIMENSION(4) :: id_dims_loc
	117	INTEGER(iwp), DIMENSION(0:1,4) :: id_dims
	118	INTEGER(iwp), DIMENSION(0:1,1000) :: id_var, levels
[1]	119
[1394]	120	LOGICAL :: avs_output, compressed, found, iso2d_output, netcdf_output, &
	121	netcdf_parallel, netcdf_0, netcdf_1
[1]	122
[1394]	123	REAL(wp) :: cpu_start_time, cpu_end_time, dx, simulated_time
	124	REAL(wp), DIMENSION(:), ALLOCATABLE :: eta, ho, hu
	125	REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pf, pf_tmp
[191]	126	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: pf3d, pf3d_tmp
[1]	127
	128	PRINT*, ''
[114]	129	PRINT*, ''
[108]	130	PRINT, ' combine_plot_fields *'
[114]	131
	132	!
	133	!-- Find out if a coupled run has been carried out
[108]	134	INQUIRE( FILE='COUPLING_PORT_OPENED', EXIST=found )
	135	IF ( found ) THEN
	136	models = 2
	137	PRINT*, ' coupled run'
	138	ELSE
	139	models = 1
	140	PRINT*, ' uncoupled run'
	141	ENDIF
[114]	142
	143	!
[691]	144	!-- Find out if a precursor ocean run has been carried out
	145	INQUIRE( FILE='PRECURSOR_OCEAN', EXIST=found )
	146	IF ( found ) THEN
	147	model_string = '_O'
	148	PRINT*, ' precursor ocean run'
	149	ELSE
	150	model_string = ''
	151	ENDIF
	152
	153	!
[114]	154	!-- Do everything for each model
[108]	155	DO model = 1, models
[114]	156	!
	157	!-- Set the model string used to identify the filenames
[108]	158	IF ( models == 2 ) THEN
	159	PRINT*, ''
	160	PRINT, ' combine_plot_fields *'
	161	IF ( model == 2 ) THEN
[114]	162	model_string = '_O'
[108]	163	PRINT*, ' now combining ocean data'
	164	PRINT*, ' ========================'
	165	ELSE
	166	PRINT*, ' now combining atmosphere data'
	167	PRINT*, ' ============================='
	168	ENDIF
	169	ENDIF
[1]	170	!
[108]	171	!-- 2D-arrays for ISO2D
	172	!-- Main loop for the three different cross-sections, starting with
	173	!-- xy-section
	174	modus = 'XY'
	175	PRINT*, ''
	176	DO WHILE ( modus == 'XY' .OR. modus == 'XZ' .OR. modus == 'YZ' )
[1]	177	!
[493]	178	!-- Take current time
	179	CALL SYSTEM_CLOCK( count, count_rate )
	180	cpu_start_time = REAL( count ) / REAL( count_rate )
	181
	182	netcdf_parallel = .FALSE.
	183	!
[108]	184	!-- Check, if file from PE0 exists. If it does not exist, PALM did not
	185	!-- create any output for this cross-section.
	186	danz = 0
[1468]	187	WRITE (id_string,'(I6.6)') danz
[108]	188	INQUIRE ( &
	189	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	190	EXIST=found )
	191	!
	192	!-- Find out the number of files (equal to the number of PEs which
	193	!-- have been used in PALM) and open them
	194	DO WHILE ( found )
[1]	195
[108]	196	OPEN ( danz+110, &
	197	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	198	FORM='UNFORMATTED' )
	199	danz = danz + 1
[1468]	200	WRITE (id_string,'(I6.6)') danz
[108]	201	INQUIRE ( &
	202	FILE='PLOT2D_'//modus//TRIM( model_string )//'_'//id_string, &
	203	EXIST=found )
[1]	204
[108]	205	ENDDO
[1]	206
	207	!
[108]	208	!-- Inquire whether an iso2d parameter file exists
	209	INQUIRE( FILE='PLOT2D_'//modus//'_GLOBAL'//TRIM( model_string ), &
	210	EXIST=iso2d_output )
[1]	211
	212	!
[108]	213	!-- Inquire whether a NetCDF file exists
	214	INQUIRE( FILE='DATA_2D_'//modus//'_NETCDF'//TRIM( model_string ), &
	215	EXIST=netcdf_0 )
[1]	216
	217	!
[108]	218	!-- Inquire whether a NetCDF file for time-averaged data exists
	219	INQUIRE( FILE='DATA_2D_'//modus//'_AV_NETCDF'//TRIM( model_string ),&
	220	EXIST=netcdf_1 )
[1]	221
[108]	222	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	223	netcdf_output = .TRUE.
[493]	224	!
	225	!-- Inquire whether the NetCDF file is already complete (parallel
	226	!-- output)
	227	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_'//modus, &
	228	EXIST=netcdf_parallel )
	229	IF ( netcdf_parallel ) THEN
	230	netcdf_parallel = .TRUE.
	231	ELSE
	232	netcdf_parallel = .FALSE.
	233	ENDIF
[108]	234	ELSE
	235	netcdf_output = .FALSE.
	236	ENDIF
[1]	237
	238	!
[108]	239	!-- Info-output
	240	PRINT*, ''
	241	PRINT, ' combine_plot_fields *'
[1]	242	#if defined( __netcdf )
[493]	243	IF ( netcdf_output ) THEN
	244	IF ( netcdf_parallel ) THEN
	245	PRINT*, ' NetCDF ' // modus // '-data are in one file ', &
	246	'(NetCDF4-format) - merging not neccessary'
	247	ELSE
	248	PRINT*, ' NetCDF output enabled'
	249	ENDIF
	250	ENDIF
[1]	251	#else
[108]	252	IF ( netcdf_output ) THEN
	253	PRINT*, '--- Sorry, no NetCDF support on this host'
	254	netcdf_output = .FALSE.
	255	ENDIF
[1]	256	#endif
[493]	257	IF ( .NOT. netcdf_parallel ) THEN
	258	IF ( danz /= 0 ) THEN
	259	PRINT*, ' ',modus,'-section: ', danz, ' file(s) found'
	260	ELSE
	261	PRINT*, ' no ', modus, '-section data available'
	262	ENDIF
[108]	263	ENDIF
[1]	264
[493]	265	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) &
	266	THEN
[1]	267	#if defined( __netcdf )
[108]	268	DO av = 0, 1
[1]	269
[108]	270	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	271	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	272
	273	!
[108]	274	!-- Open NetCDF dataset
	275	IF ( av == 0 ) THEN
	276	filename = 'DATA_2D_'//modus//'_NETCDF' &
	277	//TRIM( model_string )
	278	ELSE
	279	filename = 'DATA_2D_'//modus//'_AV_NETCDF' &
	280	//TRIM( model_string )
	281	ENDIF
	282	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	283	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 1 )
[1]	284
	285	!
[108]	286	!-- Get the list of variables (order of variables corresponds with
	287	!-- the order of data on the binary file)
	288	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	289	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	290	var_list(av) )
	291	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 2 )
[1]	292
	293	!
[108]	294	!-- Inquire id of the time coordinate variable
	295	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	296	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 3 )
[1]	297
	298	!
[108]	299	!-- Count number of variables; there is one more semicolon in the
	300	!-- string than variable names
	301	num_var(av) = -1
	302	DO i = 1, LEN( var_list(av) )
	303	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) +1
	304	ENDDO
[1]	305
	306	!
[108]	307	!-- Extract the variable names from the list and inquire their
	308	!-- NetCDF IDs
	309	pos = INDEX( var_list(av), ';' )
[1]	310	!
[108]	311	!-- Loop over all variables
	312	DO i = 1, num_var(av)
[1]	313
	314	!
[108]	315	!-- Extract variable name from list
	316	var_list(av) = var_list(av)(pos+1:)
	317	pos = INDEX( var_list(av), ';' )
	318	var_name = var_list(av)(1:pos-1)
[1]	319
	320	!
[108]	321	!-- Get variable ID from name
	322	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	323	id_var(av,i) )
	324	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 4 )
[1]	325
	326	!
[108]	327	!-- Get number of x/y/z levels for that variable
	328	nc_stat = NF90_INQUIRE_VARIABLE( id_set(av), id_var(av,i), &
	329	dimids = id_dims_loc )
	330	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 5 )
	331	id_dims(av,:) = id_dims_loc
[1]	332
	333	!
[108]	334	!-- Inquire dimension ID
	335	DO j = 1, 4
	336	nc_stat = NF90_INQUIRE_DIMENSION( id_set(av), &
	337	id_dims(av,j), dimname, levels(av,i) )
	338	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 6 )
[1]	339
[108]	340	IF ( modus == 'XY' .AND. INDEX(dimname, 'z') /= 0 ) EXIT
	341	IF ( modus == 'XZ' .AND. INDEX(dimname, 'y') /= 0 ) EXIT
	342	IF ( modus == 'YZ' .AND. INDEX(dimname, 'x') /= 0 ) EXIT
	343	ENDDO
	344
[1]	345	ENDDO
	346
[108]	347	ENDDO ! av = 0, 1
[1]	348
[179]	349	#endif
[108]	350	ENDIF
[1]	351
	352	!
[108]	353	!-- Read the arrays, as long as the end of the file is reached
[493]	354	IF ( .NOT. netcdf_parallel ) THEN
[1]	355
[493]	356	fanz = 0
	357	current_level = 1
	358	current_var = 999999999
[1]	359
[493]	360	DO WHILE ( danz /= 0 )
	361
[1]	362	!
[493]	363	!-- Loop over all files (reading data of the subdomains)
	364	DO id = 0, danz-1
[1]	365	!
[493]	366	!-- File from PE0 contains special information at the beginning,
	367	!-- concerning the lower and upper indices of the total-domain
	368	!-- used in PALM (nxag, nxeg, nyag, nyeg) and the lower and
[1551]	369	!-- upper indices of the array to be written by this routine
[493]	370	!-- (nxa, nxe, nya, nye). Usually in the horizontal directions
	371	!-- nxag=-1 and nxa=0 while all other variables have the same
	372	!-- value (i.e. nxeg=nxe).
	373	!-- Allocate necessary arrays, open the output file and write
	374	!-- the coordinate informations needed by ISO2D.
	375	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
	376	READ ( id+110 ) nxag, nxeg, nyag, nyeg
	377	READ ( id+110 ) nxa, nxe, nya, nye
	378	ALLOCATE ( eta(nya:nye), ho(nxa:nxe), hu(nxa:nxe), &
	379	pf(nxag:nxeg,nyag:nyeg) )
	380	READ ( id+110 ) dx, eta, hu, ho
[1]	381
[1551]	382
	383	!
	384	!-- Set actual domain bounds to total domain
	385	ya_do = nya
	386	ye_do = nye
	387
[493]	388	IF ( iso2d_output ) THEN
	389	OPEN ( 2, FILE='PLOT2D_'//modus//TRIM( model_string ),&
	390	FORM='UNFORMATTED' )
	391	WRITE ( 2 ) dx, eta, hu, ho
	392	ENDIF
[108]	393	ENDIF
[1]	394	!
[493]	395	!-- Read output time
	396	IF ( netcdf_output .AND. id == 0 ) THEN
	397	IF ( netcdf_1 ) THEN
	398	READ ( id+110, END=998 ) simulated_time, time_step, av
	399	ELSE
[1]	400	!
[493]	401	!-- For compatibility with earlier PALM versions
	402	READ ( id+110, END=998 ) simulated_time, time_step
	403	av = 0
	404	ENDIF
[108]	405	ENDIF
[1]	406	!
[493]	407	!-- Read subdomain indices
[1551]	408	READ ( id+110, END=998 ) xa, xe, ya, ye, ya_tot, ye_tot
	409
[1]	410	!
[493]	411	!-- IF the PE made no output (in case that no part of the
	412	!-- cross-section is situated on this PE), indices have the
	413	!-- value -1
	414	IF ( .NOT. ( xa == -1 .AND. xe == -1 .AND. &
	415	ya == -1 .AND. ye == -1 ) ) THEN
[1551]	416
	417
[1]	418	!
[493]	419	!-- Read the subdomain grid-point values
	420	ALLOCATE( pf_tmp(xa:xe,ya:ye) )
	421	READ ( id+110 ) pf_tmp
[1551]	422	!
	423	!-- Calculate indices on atmospheric grid (e.g. for soil model
	424	!-- quantities)
	425	IF ( ya /= ya_tot .OR. ye /= ye_tot ) THEN
	426	ye_do = ye - ya
	427	ya_do = ya
	428	pf(xa:xe,ya_do:ye_do) = pf_tmp
	429	ELSE
	430	ye_do = nye
	431	ya_do = nya
	432	pf(xa:xe,ya:ye) = pf_tmp
	433	ENDIF
	434
[493]	435	DEALLOCATE( pf_tmp )
	436	ENDIF
	437	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	438
[493]	439	ENDDO
[1]	440	!
[493]	441	!-- Write the data of the total domain cross-section
	442	IF ( iso2d_output ) WRITE ( 2 ) pf(nxa:nxe,nya:nye)
[1]	443
	444	!
[493]	445	!-- Write same data in NetCDF format
	446	IF ( netcdf_output ) THEN
[1]	447	#if defined( __netcdf )
	448	!
[493]	449	!-- Check if a new time step has begun; if yes write data to
	450	!-- time axis
	451	IF ( current_var(av) > num_var(av) ) THEN
	452	current_var(av) = 1
	453	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	454	(/ simulated_time /), &
	455	start = (/ time_step /), &
	456	count = (/ 1 /) )
	457	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 7 )
	458	ENDIF
[1]	459
	460	!
[493]	461	!-- Now write the data; this is mode dependent
	462	SELECT CASE ( modus )
[1]	463
[493]	464	CASE ( 'XY' )
	465	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	466	id_var(av,current_var(av)), &
	467	pf(nxa:nxe,nya:nye), &
	468	start = (/ 1, 1, current_level(av), time_step /), &
	469	count = (/ nxe-nxa+1, nye-nya+1, 1, 1 /) )
[493]	470	IF ( nc_stat /= NF90_NOERR ) THEN
	471	CALL handle_netcdf_error( 8 )
	472	ENDIF
[1]	473
[493]	474	CASE ( 'XZ' )
	475	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	476	id_var(av,current_var(av)), &
[1551]	477	pf(nxa:nxe,ya_do:ye_do), &
[1]	478	start = (/ 1, current_level(av), 1, time_step /), &
[1551]	479	count = (/ nxe-nxa+1, 1, ye_do-ya_do+1, 1 /) )
[493]	480	IF ( nc_stat /= NF90_NOERR ) THEN
	481	CALL handle_netcdf_error( 9 )
	482	ENDIF
[1]	483
[493]	484	CASE ( 'YZ' )
	485	nc_stat = NF90_PUT_VAR( id_set(av), &
[1]	486	id_var(av,current_var(av)), &
[1551]	487	pf(nxa:nxe,ya_do:ye_do), &
[1]	488	start = (/ current_level(av), 1, 1, time_step /), &
[1551]	489	count = (/ 1, nxe-nxa+1, ye_do-ya_do+1, 1 /) )
[493]	490	IF ( nc_stat /= NF90_NOERR ) THEN
	491	CALL handle_netcdf_error( 10 )
	492	ENDIF
[1]	493
[493]	494	END SELECT
[1]	495
	496	!
[493]	497	!-- Data is written, check if max level is reached
	498	current_level(av) = current_level(av) + 1
	499	IF ( current_level(av) > levels(av,current_var(av)) ) THEN
	500	current_level(av) = 1
	501	current_var(av) = current_var(av) + 1
	502	ENDIF
[108]	503
[179]	504	#endif
[493]	505	ENDIF
[1]	506
[493]	507	ENDDO
[1]	508
[493]	509	ENDIF
	510
	511	998 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	512	!
[108]	513	!-- Print the number of the arrays processed
	514	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	515	IF ( fanz(1) /= 0 ) THEN
	516	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	517	ENDIF
[1]	518
	519	!
[108]	520	!-- Close all files and deallocate arrays
	521	DO id = 0, danz-1
	522	CLOSE ( id+110 )
	523	ENDDO
	524	CLOSE ( 2 )
	525	DEALLOCATE ( eta, ho, hu, pf )
[1]	526
	527	!
[493]	528	!-- Close the NetCDF file
	529	IF ( netcdf_output ) THEN
[1]	530	#if defined( __netcdf )
[493]	531	IF ( netcdf_0 ) THEN
	532	nc_stat = NF90_CLOSE( id_set(0) )
	533	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 11 )
	534	ENDIF
	535	IF ( netcdf_1 ) THEN
	536	nc_stat = NF90_CLOSE( id_set(1) )
	537	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 12 )
	538	ENDIF
	539	#endif
[108]	540	ENDIF
[493]	541	ENDIF
	542
	543	!
	544	!-- Output required cpu time
	545	IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
	546	CALL SYSTEM_CLOCK( count, count_rate )
	547	cpu_end_time = REAL( count ) / REAL( count_rate )
	548	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	549	cpu_end_time-cpu_start_time, ' sec'
[1]	550	ENDIF
	551
	552	!
[108]	553	!-- Choose the next cross-section
	554	SELECT CASE ( modus )
	555	CASE ( 'XY' )
	556	modus = 'XZ'
	557	CASE ( 'XZ' )
	558	modus = 'YZ'
	559	CASE ( 'YZ' )
	560	modus = 'no'
	561	END SELECT
[1]	562
[108]	563	ENDDO
[1]	564
	565
	566	!
[108]	567	!-- Combine the 3D-arrays
[493]	568	netcdf_parallel = .FALSE.
[1]	569
	570	!
[493]	571	!-- Info-output
	572	PRINT*, ' '
	573	PRINT, ' combine_plot_fields *'
	574
	575	!
	576	!-- Take current time
	577	CALL SYSTEM_CLOCK( count, count_rate )
	578	cpu_start_time = REAL( count ) / REAL( count_rate )
	579
	580	!
[108]	581	!-- Inquire whether an avs fld file exists
	582	INQUIRE( FILE='PLOT3D_FLD'//TRIM( model_string ), EXIST=avs_output )
[1]	583
	584	!
[108]	585	!-- Inquire whether a NetCDF file exists
	586	INQUIRE( FILE='DATA_3D_NETCDF'//TRIM( model_string ), EXIST=netcdf_0 )
[1]	587
	588	!
[108]	589	!-- Inquire whether a NetCDF file for time-averaged data exists
	590	INQUIRE( FILE='DATA_3D_AV_NETCDF'//TRIM( model_string ), EXIST=netcdf_1 )
[1]	591
[108]	592	IF ( netcdf_0 .OR. netcdf_1 ) THEN
	593	netcdf_output = .TRUE.
[493]	594	!
	595	!-- Inquire whether the NetCDF file is already complete (parallel output)
	596	INQUIRE( FILE='NO_COMBINE_PLOT_FIELDS_3D', EXIST=netcdf_parallel )
	597	IF ( netcdf_parallel ) THEN
	598	netcdf_parallel = .TRUE.
	599	ELSE
	600	netcdf_parallel = .FALSE.
	601	ENDIF
[108]	602	ELSE
	603	netcdf_output = .FALSE.
	604	ENDIF
[1]	605
	606	!
[493]	607	!-- Check, if file from PE0 exists; not neccessary in case of parallel
	608	!-- PALM output
	609	IF ( .NOT. netcdf_parallel ) THEN
	610	danz = 0
[1468]	611	WRITE (id_string,'(I6.6)') danz
[493]	612	INQUIRE ( &
	613	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM( id_string ), &
	614	EXIST=found )
	615	ELSE
	616	found = .FALSE.
	617	ENDIF
[1]	618
	619	!
[108]	620	!-- Combination only works, if data are not compressed. In that case,
	621	!-- PALM created a flag file (PLOT3D_COMPRESSED)
	622	INQUIRE ( FILE='PLOT3D_COMPRESSED'//TRIM( model_string ), &
	623	EXIST=compressed )
[1]	624
	625	!
[108]	626	!-- Find out the number of files and open them
	627	DO WHILE ( found .AND. .NOT. compressed )
[1]	628
[108]	629	OPEN ( danz+110, &
	630	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	631	FORM='UNFORMATTED')
	632	danz = danz + 1
[1468]	633	WRITE (id_string,'(I6.6)') danz
[108]	634	INQUIRE ( &
	635	FILE='PLOT3D_DATA'//TRIM( model_string )//'_'//TRIM(id_string), &
	636	EXIST=found )
[1]	637
[108]	638	ENDDO
[1]	639
	640	#if defined( __netcdf )
[493]	641	IF ( netcdf_output ) THEN
	642	IF ( netcdf_parallel ) THEN
	643	PRINT*, ' NetCDF data are in one file (NetCDF4-format)', &
	644	' - merging not neccessary'
	645	ELSE
	646	PRINT*, ' NetCDF output enabled'
	647	ENDIF
	648	ENDIF
[1]	649	#else
	650	IF ( netcdf_output ) THEN
	651	PRINT*, '--- Sorry, no NetCDF support on this host'
	652	netcdf_output = .FALSE.
	653	ENDIF
	654	#endif
[493]	655	IF ( .NOT. netcdf_parallel ) THEN
	656	IF ( danz /= 0 ) THEN
	657	PRINT*, ' 3D-data: ', danz, ' file(s) found'
[108]	658	ELSE
[493]	659	IF ( found .AND. compressed ) THEN
	660	PRINT*, '+++ no 3D-data processing, since data are compressed'
	661	ELSE
	662	PRINT*, ' no 3D-data file available'
	663	ENDIF
[108]	664	ENDIF
[1]	665	ENDIF
	666
[493]	667	IF ( netcdf_output .AND. .NOT. netcdf_parallel .AND. danz /= 0 ) THEN
[1]	668	#if defined( __netcdf )
[108]	669	DO av = 0, 1
[1]	670
[108]	671	IF ( av == 0 .AND. .NOT. netcdf_0 ) CYCLE
	672	IF ( av == 1 .AND. .NOT. netcdf_1 ) CYCLE
[1]	673
	674	!
[108]	675	!-- Open NetCDF dataset
	676	IF ( av == 0 ) THEN
	677	filename = 'DATA_3D_NETCDF'//TRIM( model_string )
	678	ELSE
	679	filename = 'DATA_3D_AV_NETCDF'//TRIM( model_string )
	680	ENDIF
	681	nc_stat = NF90_OPEN( filename, NF90_WRITE, id_set(av) )
	682	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 13 )
[1]	683
	684
	685	!
[108]	686	!-- Get the list of variables (order of variables corresponds with the
	687	!-- order of data on the binary file)
	688	var_list(av) = ' ' ! GET_ATT does not assign trailing blanks
	689	nc_stat = NF90_GET_ATT( id_set(av), NF90_GLOBAL, 'VAR_LIST', &
	690	var_list(av) )
	691	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 14 )
[1]	692
	693	!
[108]	694	!-- Inquire id of the time coordinate variable
	695	nc_stat = NF90_INQ_VARID( id_set(av), 'time', id_var_time(av) )
	696	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 15 )
[1]	697
	698	!
[108]	699	!-- Count number of variables; there is one more semicolon in the
	700	!-- string than variable names
	701	num_var(av) = -1
	702	DO i = 1, LEN( var_list(av) )
	703	IF ( var_list(av)(i:i) == ';' ) num_var(av) = num_var(av) + 1
	704	ENDDO
[1]	705
	706	!
[108]	707	!-- Extract the variable names from the list and inquire their NetCDF
	708	!-- IDs
	709	pos = INDEX( var_list(av), ';' )
[1]	710	!
[108]	711	!-- Loop over all variables
	712	DO i = 1, num_var(av)
[1]	713
	714	!
[108]	715	!-- Extract variable name from list
	716	var_list(av) = var_list(av)(pos+1:)
	717	pos = INDEX( var_list(av), ';' )
	718	var_name = var_list(av)(1:pos-1)
[1]	719
	720	!
[108]	721	!-- Get variable ID from name
	722	nc_stat = NF90_INQ_VARID( id_set(av), TRIM( var_name ), &
	723	id_var(av,i) )
	724	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 16 )
[1]	725
[108]	726	ENDDO
[1]	727
[108]	728	ENDDO ! av=0,1
[1]	729
[179]	730	#endif
[108]	731	ENDIF
[1]	732
	733	!
[108]	734	!-- Read arrays, until the end of the file is reached
[493]	735	IF ( .NOT. netcdf_parallel ) THEN
[1]	736
[493]	737	current_var = 999999999
	738	fanz = 0
	739	DO WHILE ( danz /= 0 )
	740
[1]	741	!
[493]	742	!-- Loop over all files
	743	DO id = 0, danz-1
[1]	744	!
[493]	745	!-- File from PE0 contains special information at the beginning,
	746	!-- concerning the lower and upper indices of the total-domain used
[1551]	747	!-- in PALM (nxag, nxeg, nyag, nyeg) and the lower and
[493]	748	!-- upper indices of the array to be written by this routine (nxa,
	749	!-- nxe, nya, nye, nza, nze). Usually nxag=-1 and nxa=0, nyag=-1
[1551]	750	!-- and nya=0, nzeg=nz and nze=nz_do3d.
[493]	751	!-- Allocate necessary array and open the output file.
	752	IF ( id == 0 .AND. fanz(0) == 0 .AND. fanz(1) == 0 ) THEN
[1551]	753	READ ( id+110 ) nxag, nxeg, nyag, nyeg
[493]	754	READ ( id+110 ) nxa, nxe, nya, nye, nza, nze
	755	ALLOCATE ( pf3d(nxa:nxe,nya:nye,nza:nze) )
	756	IF ( avs_output ) THEN
	757	OPEN ( 2, FILE='PLOT3D_DATA'//TRIM( model_string ), &
	758	FORM='UNFORMATTED' )
	759	ENDIF
[108]	760	ENDIF
[1]	761
	762	!
[493]	763	!-- Read output time
	764	IF ( netcdf_output .AND. id == 0 ) THEN
	765	IF ( netcdf_1 ) THEN
	766	READ ( id+110, END=999 ) simulated_time, time_step, av
	767	ELSE
[1]	768	!
[493]	769	!-- For compatibility with earlier PALM versions
	770	READ ( id+110, END=999 ) simulated_time, time_step
	771	av = 0
	772	ENDIF
[108]	773	ENDIF
[1]	774
	775	!
[493]	776	!-- Read subdomain indices and grid point values
	777	READ ( id+110, END=999 ) xa, xe, ya, ye, za, ze
	778	ALLOCATE( pf3d_tmp(xa:xe,ya:ye,za:ze) )
	779	READ ( id+110 ) pf3d_tmp
[210]	780
[493]	781	xxa = MAX( nxa, xa )
	782	xxe = MIN( nxe, xe )
	783	yya = MAX( nya, ya )
	784	yye = MIN( nye, ye )
[1551]	785	DO k = za, ze
[493]	786	DO j = yya, yye
	787	DO i = xxa, xxe
	788	pf3d(i,j,k) = pf3d_tmp(i,j,k)
	789	ENDDO
[210]	790	ENDDO
	791	ENDDO
	792
[493]	793	DEALLOCATE( pf3d_tmp )
	794	IF ( id == 0 ) fanz(av) = fanz(av) + 1
[1]	795
[493]	796	ENDDO
[1]	797
	798	!
[493]	799	!-- Write data of the total domain
	800	IF ( avs_output ) WRITE ( 2 ) pf3d(nxa:nxe,nya:nye,nza:nze)
[1]	801
	802	!
[493]	803	!-- Write same data in NetCDF format
	804	IF ( netcdf_output ) THEN
[1]	805	#if defined( __netcdf )
	806	!
[493]	807	!-- Check if a new time step has begun; if yes write data to time
	808	!-- axis
	809	IF ( current_var(av) > num_var(av) ) THEN
	810	current_var(av) = 1
	811	nc_stat = NF90_PUT_VAR( id_set(av), id_var_time(av), &
	812	(/ simulated_time /),&
	813	start = (/ time_step /), count = (/ 1 /) )
	814	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 17 )
	815	ENDIF
[1]	816
	817	!
[493]	818	!-- Now write the data
	819	nc_stat = NF90_PUT_VAR( id_set(av), id_var(av,current_var(av)),&
[1551]	820	pf3d(nxa:nxe,nya:nye,za:ze), start = (/ 1, 1, 1, time_step /),&
	821	count = (/ nxe-nxa+1, nye-nya+1, ze-za+1, 1 /) )
[493]	822	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 18 )
[1]	823
[493]	824	current_var(av) = current_var(av) + 1
[1]	825
	826	#endif
[493]	827	ENDIF
[1]	828
[493]	829	ENDDO
[1]	830
[493]	831	ENDIF
	832
	833	999 IF ( danz /= 0 .AND. .NOT. netcdf_parallel ) THEN
[1]	834	!
[108]	835	!-- Print the number of arrays processed
	836	WRITE (*,'(16X,I4,A)') fanz(0)+fanz(1), ' array(s) processed'
	837	IF ( fanz(1) /= 0 ) THEN
	838	WRITE (*,'(16X,I4,A)') fanz(1), ' array(s) are time-averaged'
	839	ENDIF
[1]	840	!
[108]	841	!-- Close all files and deallocate array
	842	DO id = 0, danz-1
	843	CLOSE ( id+110 )
	844	ENDDO
	845	CLOSE ( 2 )
	846	DEALLOCATE ( pf3d )
[1]	847	!
[108]	848	!-- Close the NetCDF file
	849	IF ( netcdf_output ) THEN
[1]	850	#if defined( __netcdf )
[108]	851	IF ( netcdf_0 ) THEN
	852	nc_stat = NF90_CLOSE( id_set(0) )
	853	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 19 )
	854	ENDIF
	855	IF ( netcdf_1 ) THEN
	856	nc_stat = NF90_CLOSE( id_set(1) )
	857	IF ( nc_stat /= NF90_NOERR ) CALL handle_netcdf_error( 20 )
	858	ENDIF
	859	#endif
[1]	860	ENDIF
[493]	861
	862	!
	863	!-- Output required cpu time
	864	CALL SYSTEM_CLOCK( count, count_rate )
	865	cpu_end_time = REAL( count ) / REAL( count_rate )
	866	WRITE (*,'(5X,A,F9.3,A)') 'Required cpu-time: ', &
	867	cpu_end_time-cpu_start_time, ' sec'
	868
[1]	869	ENDIF
	870
[108]	871	ENDDO ! models
[1]	872
[108]	873
[1]	874	CONTAINS
	875
	876
	877	SUBROUTINE handle_netcdf_error( errno )
	878	!
	879	!-- Prints out a text message corresponding to the current NetCDF status
	880
	881	IMPLICIT NONE
	882
	883	INTEGER, INTENT(IN) :: errno
	884
[179]	885	#if defined( __netcdf )
[1]	886	IF ( nc_stat /= NF90_NOERR ) THEN
	887	PRINT*, '+++ combine_plot_fields netcdf: ', av, errno, &
	888	TRIM( nf90_strerror( nc_stat ) )
	889	ENDIF
[179]	890	#endif
[1]	891
	892	END SUBROUTINE handle_netcdf_error
	893
	894
	895	END PROGRAM combine_plot_fields
	896
	897
	898

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