source: palm/trunk/UTIL/chemistry/gasphase_preproc/run_kpp4palm.sh

Last change on this file was 4843, checked in by raasch, 16 months ago

local namelist parameter added to switch off the module although the respective module namelist appears in the namelist file, further copyright updates

  • Property svn:executable set to *
  • Property svn:keywords set to Id
File size: 4.3 KB
Line 
1#!/bin/bash
2#
3# run_kpp4palm - script for running gasphase preprocessor
4
5#------------------------------------------------------------------------------#
6# This file is part of the PALM model system.
7#
8# PALM is free software: you can redistribute it and/or modify it under the terms
9# of the GNU General Public License as published by the Free Software Foundation,
10# either version 3 of the License, or (at your option) any later version.
11#
12# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14# A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
15#
16# You should have received a copy of the GNU General Public License along with
17# PALM. If not, see <http://www.gnu.org/licenses/>.
18#
19# Copyright 2017-2021  Klaus Ketelsen and MPI-CH (April 2007)
20# Copyright 2017-2021  Karlsruhe Institute of Technology
21# Copyright 2017-2021  Leibniz Universitaet Hannover
22#------------------------------------------------------------------------------#
23#
24# Current revisions:
25# ------------------
26#
27#
28# Former revisions:
29# -----------------
30# $Id: run_kpp4palm.sh 4843 2021-01-15 15:22:11Z banzhafs $
31# updated some comments
32#
33#
34# 4451 2020-03-10 07:25:32Z raasch
35# rename run_kpp4palm.ksh to run_kpp4palm.sh, convert to bash
36# default mechanism changed to phstatp
37#
38# 3487 2018-11-05 07:18:02Z maronga
39# Some correctetion of comments
40#
41# 3458 2018-10-30 14:51:23Z kanani
42# passed $MECH insted of $DEFDIR to kpp4palm.ksh                   forkel  25. Sept. 2018
43# re-activaded  choice of deindexing method and vector mode        forkel  June 2018
44#
45# 2718 2018-01-02 08:49:38Z maronga
46# Initial revision
47#
48#
49#
50#
51# Other notes:
52# ------------
53# Small adaptations (added MECH as argument, re-introduced relative path,
54#                    adaption to changing kp4 to kpp4palm)
55# filename changed from run_kp4.ksh to run_kpp4palm.ksh
56#
57# Nov. 2016: Initial Version of KPP chemistry by Klaus Ketelsen
58#
59
60echo "\$1 = " $1 
61
62if [[ $1 == "clean" ]]
63then
64  cd kpp
65  make distclean
66  cd ..
67
68  cd kpp4palm
69  make distclean                 
70  cd ..
71  exit
72fi
73
74export PATH=$PATH:`pwd`/kpp4palm/bin
75
76# build kpp
77
78cp mechanisms/UserRateLaws.f90 kpp/util
79cd kpp
80make
81cd ..
82
83# build kpp4palm.exe
84
85cd kpp4palm
86make install                   
87cd ..
88
89# run kpp4palm/bin/kpp4palm.sh with the following arguments
90#
91#    -m   MECH="phstatp";;          # chemical mechanism
92#                                     (phstat, phstatp, smog, simple,cbm4, etc, see directory mechanisms)
93#    -i   DE_INDEX=2;;              # deindexing method (0,1,2,3; 0=no deindexing)
94#    -v   MODE="-v";;               # vector mode on (not working completely yet)
95#    -l   VLEN=$OPTARG;;            # Set vector length (not working completely yet)
96#    -k   KEEP="NO";;               # if "yes" keep Working directory
97#    -u   UPDT="NO";;               # if "yes" update the existing f90 code in the def_MECH directory
98#                                   # Use "YES" with care as the existing sample file is overwritten
99#
100##   Further options (currently not passed as changing does not make sense to change these)
101##    -f   DE_INDEX_FAST="YES";;     # if set, fast deindexing
102##    -o   OUTDIR=$OPTARG;;          # Output directory of Generated Code
103##                                     (`pwd`/../../../SOURCE)
104##    -p   PREFIX=$OPTARG;;          # Name Prefix (chem_gasphase_mod)
105##    -s   KPP_SOLVER=$OPTARG;;      # Name Prefix (rosenbrock)
106
107 
108echo $PATH
109# use phstatp (photo-stationary) mechanism as default
110MECH=phstatp
111DEIN=2
112
113while  getopts m:i:kuvl:  opt   # get options
114do case $opt in
115      m)   MECH=$OPTARG;;          # mechanism name as part of mechanisms/def_[mechanism_name]
116
117      i)   DEIN=$OPTARG;;          # deindexing method (0,1,2,3; 0=no deindexing)
118
119      k)   KEEP="-k";;             # keep Working directory
120
121      u)   UPDT="-u";;             # update sample output file
122
123      v)   MODE="-v";;             # vector mode on
124
125      c)   COPY="-c";;             # copy output to def_MECH
126
127      l)   VLEN=$OPTARG;;          # Set vector length
128
129      \?)  print ${0##*/} "unknown option:" $OPTARG
130           print "USAGE: ${0##*/} [ -m mechanism_name] [ -i n (n=0,1,2,3)] [ -k] [ -u] [ -v] [ -l N (N=vector length)]"
131           exit 1;;
132   esac
133done
134echo Now do kpp4palm for $MECH
135
136kpp4palm.sh -m $MECH -i $DEIN $KEEP $UPDT $MODE -l $VLEN
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