1 | % $Id: palm_overview.tex 1233 2013-09-23 10:20:49Z raasch $ |
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2 | \input{header_tmp.tex} |
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3 | %\input{header_lectures.tex} |
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4 | |
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5 | \usepackage[utf8]{inputenc} |
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6 | \usepackage[T1]{fontenc} |
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7 | \usepackage{pgf} |
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8 | \usetheme{Dresden} |
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9 | \usepackage{subfigure} |
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10 | \usepackage{units} |
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11 | \usepackage{multimedia} |
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12 | \newcommand{\event}[1]{\newcommand{\eventname}{#1}} |
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13 | \usepackage{xmpmulti} |
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14 | \usepackage{tikz} |
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15 | \usetikzlibrary{shapes,arrows,positioning} |
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16 | \def\Tiny{\fontsize{4pt}{4pt}\selectfont} |
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17 | |
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18 | \institute{Institut fÌr Meteorologie und Klimatologie, Leibniz UniversitÀt Hannover} |
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19 | \date{last update: \today} |
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20 | \event{PALM Seminar} |
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21 | \setbeamertemplate{navigation symbols}{} |
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22 | |
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23 | \setbeamertemplate{footline} |
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24 | {% |
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25 | \begin{beamercolorbox}[rightskip=-0.1cm]& |
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26 | {\includegraphics[height=0.65cm]{imuk_logo.pdf}\hfill \includegraphics[height=0.65cm]{luh_logo.pdf}} |
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27 | \end{beamercolorbox} |
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28 | \begin{beamercolorbox}[ht=2.5ex,dp=1.125ex,% |
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29 | leftskip=.3cm,rightskip=0.3cm plus1fil]{title in head/foot}% |
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30 | {\leavevmode{\usebeamerfont{author in head/foot}\insertshortauthor} \hfill \eventname \hfill \insertframenumber \; / \inserttotalframenumber}% |
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31 | \end{beamercolorbox}% |
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32 | % \begin{beamercolorbox}[colsep=1.5pt]{lower separation line foot}% |
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33 | % \end{beamercolorbox} |
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34 | } |
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35 | %\logo{\includegraphics[width=0.3\textwidth]{luhimuk_logo.png}} |
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36 | |
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37 | \title[PALM Overview]{PALM Overview} |
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38 | \author{Siegfried Raasch} |
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39 | |
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40 | |
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41 | % Notes: |
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42 | % jede subsection bekommt einen punkt im menu (vertikal ausgerichtet. |
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43 | % jeder frame in einer subsection bekommt einen punkt (horizontal ausgerichtet) |
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44 | \begin{document} |
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45 | |
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46 | \begin{frame} |
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47 | \titlepage |
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48 | \end{frame} |
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49 | |
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50 | \section{PALM Overview} |
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51 | \subsection{PALM Overview} |
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52 | |
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53 | %Folie 01 |
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54 | \begin{frame} |
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55 | \begin{center} |
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56 | PALM - Overview |
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57 | \end{center} |
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58 | \end{frame} |
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59 | |
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60 | %Folie 02 |
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61 | \begin{frame} |
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62 | \frametitle{PALM - Overview} |
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63 | \begin{flushleft} |
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64 | \textbf{PA}rallelized \textbf{L}ES \textbf{M}odel |
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65 | \end{flushleft} |
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66 | \begin{itemize} |
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67 | \item<2->{First version 1997, continously developed since then} |
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68 | \item<3->{Written in FORTRAN 95} |
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69 | \item<4->{Very high performance and scalability on all state-of-the-art parallel architectures} |
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70 | \item<5->{One code for atmosphere and ocean} |
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71 | \item<6->{Code is free to use for scientific applications} |
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72 | \item<7->{Code is under the GNU public license (GPL V3)} |
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73 | \end{itemize} |
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74 | \end{frame} |
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75 | |
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76 | %Folie 03 |
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77 | \begin{frame} |
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78 | \frametitle{PALM - Overview} |
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79 | \begin{flushleft} |
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80 | \textbf{Software-development in a professional environment} |
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81 | \end{flushleft} |
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82 | \begin{itemize} |
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83 | \item<2->{Detailed online-documentation} |
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84 | \item<3->{Interface for code-extensions by users} |
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85 | \item<4->{Code is managed and distributed via subversion } |
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86 | \begin{itemize} |
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87 | \item<5->{Direct code-access from the internet} |
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88 | \item<6->{Allows collaborative code-development} |
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89 | \end{itemize} |
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90 | \end{itemize} |
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91 | \end{frame} |
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92 | |
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93 | %Folie 04 |
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94 | \begin{frame} |
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95 | \frametitle{PALM - Features (General Overview)} |
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96 | \framesubtitle{Physics / Numerics (special characteristics)} |
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97 | \begin{itemize} |
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98 | \item<2->{Cyclic horizontal boundary conditions but also non-cyclic boundary conditions along x or y available} |
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99 | \item<3->{Turbulent inflow is realized for non-cyclic boundary conditions} |
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100 | \item<4->{Topography can be used} |
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101 | \item<5->{A Lagrangian particle model is embedded} |
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102 | \item<6->{Code can be switched to ocean, i.e. salinity equation and equation of state for seawater is included} |
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103 | \item<7->{Coupled ocean-atmosphere simulations are possible} |
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104 | \item<8->{A simple canopy model is included} |
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105 | \item<9->{It allows for very huge applications\\ (currently $4000^{3}$ gridpoints)} |
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106 | \end{itemize} |
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107 | \end{frame} |
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108 | |
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109 | %Folie 05 |
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110 | \begin{frame} |
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111 | \frametitle{PALM - Features (General Overview)} |
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112 | \begin{flushleft} |
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113 | \textbf{Technical features} |
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114 | \end{flushleft} |
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115 | \begin{itemize} |
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116 | \item<2->{Scripts allow for very comfortable operation of the model} |
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117 | \item<3->{Model can be adapted for any kind of (Unix) system by simply adjusting a configuration file} |
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118 | \item<4->{Batch jobs and job chains (restart mechanism) can be automatically created (requires manual adjustments of scripts)} |
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119 | \item<5->{Runs are controlled by a simple NAMELIST parameter file} |
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120 | \item<6->{ Error messages inform in case of parameter inconsistencies or other problems detected during runtime} |
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121 | \end{itemize} |
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122 | \end{frame} |
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123 | |
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124 | %Folie 06 |
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125 | \begin{frame} |
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126 | \frametitle{PALM - Features (General Overview)} |
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127 | \begin{flushleft} |
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128 | \textbf{Technical features} |
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129 | \end{flushleft} |
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130 | \begin{itemize} |
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131 | \item<1->{Standard data analysis is done within the simulation itself} |
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132 | \item<2->{All output is in standard netCDF data format} |
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133 | \item<3->{A user-interface allows for easy code extensions by the user} |
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134 | \item<4->{A powerful 3D-visualization software is included in the code (requires additional graphics library, (a streaming server), and a plugin for web-browsers)} |
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135 | \end{itemize} |
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136 | \end{frame} |
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137 | |
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138 | %Folie 07 |
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139 | \begin{frame} |
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140 | \begin{figure} |
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141 | \href{/home/maronga/dvr/data/rinne_1.html}{\includegraphics<3,5,7,9,11>[height=0.35\textheight]{palm_overview_figures/Fig08_mini_Luepkes.png}} |
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142 | \href{Link 2}{\includegraphics<5,7,9,11>[height=0.35\textheight]{palm_overview_figures/Fig09_mini_Raasch_Franke.png}} |
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143 | \href{Link 3}{\includegraphics<7,9,11>[height=0.35\textheight]{palm_overview_figures/Fig10_mini_gryschka.png}} |
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144 | \href{Link 4}{\includegraphics<9,11>[height=0.35\textheight]{palm_overview_figures/Fig11_mini_steinfeld.png}} |
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145 | \href{Link 5}{\includegraphics<11>[height=0.35\textheight]{palm_overview_figures/Fig07_mini_Letzel.png}} |
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146 | \end{figure} |
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147 | \begin{center} |
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148 | \includegraphics<1>[height=0.82\textheight]{palm_overview_figures/Fig05_land.png} |
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149 | \includegraphics<2>[height=0.82\textheight]{palm_overview_figures/Fig06_ice.png} |
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150 | \includegraphics<4>[height=0.82\textheight]{palm_overview_figures/Fig04_staubteufel.png} |
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151 | \includegraphics<6>[height=0.82\textheight]{palm_overview_figures/Fig03_clouds.png} |
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152 | \includegraphics<8>[height=0.82\textheight]{palm_overview_figures/Fig02_Mast.png} |
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153 | \includegraphics<10>[height=0.82\textheight]{palm_overview_figures/Fig01_letzel_building.png} |
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154 | \end{center} |
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155 | \end{frame} |
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156 | |
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157 | %Folie 08 |
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158 | \begin{frame} |
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159 | \frametitle{PALM â External Users / Areas of Application} |
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160 | \begin{itemize} |
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161 | \item<1->{Users / Collaborations} |
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162 | \begin{itemize} |
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163 | \item<2->{\textbf{AWI} Alfred Wegener Institute for Polar Research (Bremerhaven, Germany)} |
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164 | \item<3->{\textbf{ForWind} (University of Oldenburg, Germany)} |
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165 | \item<4->{\textbf{NERSC} Nansen Environmental And Remote Sensing Center (Bergen, Norway)} |
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166 | \item<5->{\textbf{FMI} Finnish Meteorological Institute (Helsinki, Finland)} |
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167 | \item<6->{Department of Atmospheric Sciences, \textbf{Yonsei University} (Seoul, Korea)} |
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168 | \item<7->{\textbf{IGSES} (Interdisciplinary Graduate School of Engineering Sciences), \textbf{Kyushu University} (Fukuoka, Japan)} |
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169 | \item<8->{School of Earth and Environmental Science, \textbf{Seoul National University} (Seoul, Korea)} |
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170 | \item<9->{Dept. of Intl. Development Eng., \textbf{Tokyo Institute of Technology} (Tokyo, Japan)} |
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171 | \end{itemize} |
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172 | \end{itemize} |
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173 | \end{frame} |
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174 | |
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175 | %Folie 09 |
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176 | \begin{frame} |
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177 | \frametitle{PALM â External Users / Areas of Application} |
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178 | \begin{itemize} |
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179 | \item<1->{Areas of Application} |
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180 | \begin{itemize} |
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181 | \item<2->{Interaction of boundary layer turbulence $\leftrightarrow$ wind energy converters} |
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182 | \item<3->{Improvement of turbulence parameterizations} |
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183 | \item<4->{Atmosphere-ocean coupling} |
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184 | \item<5->{Ocean mixed layer} |
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185 | \item<6->{Turbulence in the urban canopy layer} |
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186 | \end{itemize} |
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187 | \end{itemize} |
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188 | \end{frame} |
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189 | |
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190 | \section{Technical Issues} |
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191 | \subsection{Technical Issues} |
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192 | |
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193 | %Folie 10 |
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194 | \begin{frame} |
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195 | \begin{center} |
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196 | PALM - Overview\\ |
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197 | Technical Issues |
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198 | \end{center} |
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199 | \end{frame} |
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200 | |
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201 | %Folie 11 |
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202 | \begin{frame} |
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203 | \tikzstyle{green} = [rectangle, draw, fill=green!20, text width=0.15\textwidth, font=\scriptsize] |
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204 | \tikzstyle{white} = [rectangle, text width=0.4\textwidth, font=\tiny] |
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205 | \tikzstyle{line} = [draw, -] |
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206 | \tikzstyle{alert} = [rectangle, draw, text width=0.77\textwidth, font=\scriptsize] |
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207 | |
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208 | \frametitle{PALM - Components - Overview} |
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209 | The PALM download not only contains the modelâs FORTRAN code but a variety of further components / files. |
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210 | The directory structure is as follows.\\ |
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211 | \ \\ |
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212 | \begin{tikzpicture}[auto, node distance=0] |
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213 | \node [green] (first) { |
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214 | \textbf{trunk} }; |
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215 | \uncover<1->{\node [white, right=1cm of first] (second) {};} |
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216 | \uncover<2->{\node [green, above=2cm of second] (third) {\textbf{EXAMPLES/}};} |
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217 | \uncover<3->{ |
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218 | \node [green, below=0.3cm of third] (fourth) {\textbf{INSTALL/}};} |
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219 | \uncover<4->{\node [green, below=0.25cm of fourth] (fifth) {\textbf{SCRIPTS/}};} |
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220 | \uncover<5->{\node [green, below=0.25cm of fifth] (sixth) {\textbf{SOURCE/}};} |
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221 | \uncover<6->{\node [green, below=0.25cm of sixth] (seventh) {\textbf{TUTORIAL/}};} |
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222 | \uncover<7->{\node [green, below=0.25cm of seventh] (eighth) {\textbf{UTIL/}};} |
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223 | \uncover<2->{\node [white, right=0.25cm of third] (ninth) {\textbf{parameter files and run control output for a variety of application examples}};} |
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224 | \uncover<3->{\node [white, right=0.25cm of fourth] (tenth) {\textbf{parameter file and run control output to check and verify the PALM installation}};} |
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225 | \uncover<4->{\node [white, right=0.25cm of fifth] (eleventh) {\textbf{shell scripts and helper programs for running PALM, default configuration files for the shell scripts}};} |
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226 | \uncover<5->{\node [white, right=0.25cm of sixth] (twelfth) {\textbf{PALM source code + Makefile}};} |
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227 | \uncover<6->{\node [white, right=0.25cm of seventh] (thirteen) {\textbf{pdf files of the seminar presentations, also accessible via the PALM trac-server}};} |
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228 | \uncover<7->{\node [white, right=0.25cm of eighth] (fourteen) {\textbf{source code for helper programs}};} |
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229 | \uncover<8->{\node [alert, below=2cm of second] (alert) {\textcolor{red}{Please never modify or delete files in trunk and its subdirectories!}};} |
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230 | |
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231 | \path<2-> [line] (first.east) -- (third.west); |
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232 | \path<3-> [line] (first.east) -- (fourth.west); |
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233 | \path<4-> [line] (first.east) -- (fifth.west); |
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234 | \path<5-> [line] (first.east) -- (sixth.west); |
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235 | \path<6-> [line] (first.east) -- (seventh.west); |
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236 | \path<7-> [line] (first.east) -- (eighth.west); |
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237 | \end{tikzpicture} |
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238 | \end{frame} |
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239 | |
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240 | %Folie 12 |
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241 | \begin{frame} |
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242 | \frametitle{Recommended Directory Structure for the PALM Installation} |
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243 | \tikzstyle{green} = [rectangle, draw, fill=green!20, text width=0.2\textwidth, font=\Tiny] |
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244 | \tikzstyle{yellow1} = [rectangle, draw, fill=yellow!20, text width=0.2\textwidth, font=\Tiny] |
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245 | \tikzstyle{yellow} = [rectangle, draw, fill=yellow!20, text width=0.12\textwidth, font=\Tiny] |
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246 | \tikzstyle{white} = [rectangle, text width=0.12\textwidth, font=\Tiny] |
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247 | \tikzstyle{white1} = [rectangle, text width=0.2\textwidth, font=\Tiny] |
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248 | \tikzstyle{line} = [draw, -] |
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249 | |
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250 | \begin{tikzpicture}[auto, node distance=0] |
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251 | \uncover<1->{\node [yellow] (first) {\textbf{\$HOME/} };} |
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252 | \uncover<2->{\node [yellow, right=0.25cm of first] (second) {\textbf{palm/}};} |
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253 | \uncover<3->{\node [yellow, right=0.25cm of second] (third) {\textbf{current\_version/}};} |
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254 | \uncover<4->{\node [green, right=0.75cm of third] (fourth) {\textbf{trunk/}};} |
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255 | \uncover<5->{\node [yellow, above=0.5cm of second] (fifth) {\textbf{job\_queue/}};} |
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256 | \uncover<6->{\node [yellow, below=1cm of third] (sixth) {\textbf{older\_version/}};} |
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257 | \uncover<7->{\node [yellow1, above=1.5cm of fourth] (seventh) {\textbf{JOBS/}};} |
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258 | \uncover<8->{\node [yellow1, above=0.5cm of fourth] (eighth) {\textbf{USER\_CODE/}};} |
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259 | \uncover<9->{\node [green, below=0.5cm of fourth] (ninth) {\textbf{MAKE\_DEPOSITORY\_.../}};} |
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260 | \uncover<10->{\node [green, below=1.5cm of fourth] (tenth) {\textbf{MAKE\_DEPOSITORY\_.../}};} |
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261 | \uncover<11->{\node [green, below=2.75cm of first] (eleventh) {\textbf{/tmp\_user\_catalog/}};} |
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262 | \uncover<12->{\node [yellow1, below=3.5cm of first] (twelfth) {\textbf{/tmp\_data\_catalog/}};} |
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263 | \uncover<3->{\node [white, above=0.05cm of third] (thirteen) {{working directory of PALM user}};} |
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264 | \uncover<5->{\node [white, above=0.05cm of fifth] (fourteen) {{contains job protocol files from batch jobs}};} |
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265 | \uncover<6->{\node [white, below=0.05cm of sixth] (fifteen) {{older PALM version, if needed}};} |
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266 | \uncover<7->{\node [white1, right=0.2cm of seventh] (sixteen) {{parameter files for steering, output data}};} |
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267 | \uncover<8->{\node [white1, right=0.2cm of eighth] (seventeen) {{code extensions from user (user interface)}};} |
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268 | \uncover<4->{\node [white1, right=0.2cm of fourth] (eighteen) {{PALM software (FORTRAN code, scripts, etc.) }};} |
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269 | \uncover<9->{\node [white1, right=0.2cm of ninth] (nineteen) {{precompiled routines, generated by \textbf{mbuild}}};} |
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270 | \uncover<10->{\node [white1, right=0.2cm of tenth] (twenty) {{$\ldots$ compiled with different options (e.g. for debugging)}};} |
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271 | \uncover<11->{\node [white1, right=0.2cm of eleventh] (twentyone) {{contains temporary directory created (by \textbf{mrun}) for each PALM run}};} |
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272 | \uncover<12->{\node [white1, right=0.2cm of twelfth] (twentytwo) {{contains large binary data files created by PALM and needed e.g. for restarts}};} |
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273 | \uncover<5->{\node [white1, below=1cm of tenth] (twentythree) {{}};} |
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274 | \uncover<5->{\node [white, right=1cm of twentythree] (twentyfour) {{optional}};} |
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275 | \uncover<4->{\node [white, above=0.1cm of eighteen] (twentyfifth) {{}};} |
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276 | \uncover<4->{\node [white, below=0.1cm of eighteen] (twentysixth) {{}};} |
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277 | \uncover<7->{\node [white, above=0.1cm of sixteen] (twentyseventh) {{}};} |
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278 | \uncover<7->{\node [white, below=0.1cm of sixteen] (twentyeighth) {{}};} |
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279 | |
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280 | \path<2-> [line] (first.east) -- (second.west); |
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281 | \path<3-> [line] (second.east) -- (third.west); |
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282 | \path<4-> [line] (third.east) -- (fourth.west); |
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283 | \path<4-> [line] (fourth.east) -- (twentyfifth.west); |
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284 | \path<4-> [line] (fourth.east) -- (twentysixth.west); |
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285 | \path<4-> [line] (fourth.east) -- (eighteen.west); |
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286 | \path<5-> [line,dashed] (first.east) -- (fifth.west); |
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287 | \path<5-> [line,dashed] (twentythree.east) -- (twentyfour.west); |
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288 | \path<6-> [line,dashed] (second.east) -- (sixth.west); |
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289 | \path<7-> [line] (third.east) -- (seventh.west); |
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290 | \path<7-> [line] (seventh.east) -- (twentyseventh.west); |
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291 | \path<7-> [line] (seventh.east) -- (twentyeighth.west); |
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292 | \path<7-> [line] (seventh.east) -- (sixteen.west); |
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293 | \path<8-> [line] (eighth.east) -- (twentyfifth.west); |
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294 | \path<8-> [line] (eighth.east) -- (twentyeighth.west); |
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295 | \path<8-> [line,dashed] (third.east) -- (eighth.west); |
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296 | \path<8-> [line] (eighth.east) -- (seventeen.west); |
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297 | \path<9-> [line] (third.east) -- (ninth.west); |
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298 | \path<10-> [line,dashed] (third.east) -- (tenth.west); |
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299 | \end{tikzpicture} |
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300 | \end{frame} |
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301 | |
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302 | %Folie 13 |
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303 | \begin{frame} |
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304 | \frametitle{PALM - Main Modes of Operation} |
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305 | \begin{itemize} |
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306 | \item<1->{\textbf{Interactive mode}} |
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307 | \begin{itemize} |
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308 | \item<2->{PALM is run in interactive shell (terminal session)} |
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309 | \item<3->{CPU time as well as number of processors for interactive runs is limited on many systems} |
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310 | \item<4->{restart runs (job chain) are not possible} |
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311 | \item<5->{only requires appropriate settings in the configuration file} |
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312 | \end{itemize} |
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313 | \item<6->\textbf{{Batch mode (running batch jobs)}} |
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314 | \begin{itemize} |
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315 | \item<7->{requires a batch queueing system (e.g. NQS, PBS, Loadleveler, etc.) on the computer in use} |
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316 | \item<8->{still may require manual adjustments of PALM scripts (\textbf{mrun, mbuild, subjob})} |
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317 | \end{itemize} |
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318 | \end{itemize} |
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319 | \end{frame} |
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320 | |
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321 | %Folie 14 |
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322 | \begin{frame} |
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323 | \begin{itemize} |
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324 | \item<1->{\textbf{Running batch jobs on remote computers}} |
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325 | \begin{itemize} |
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326 | \item<2->{requires a batch queueing system on the remote computer} |
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327 | \item<3->{requires ssh/scp access of the remote computer (in both directions âlocal $\leftrightarrow$ remoteâ), |
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328 | fixed IP-adresses for local and remote computer are required} |
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329 | \end{itemize} |
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330 | \item<4->\textbf{{Running job chains}} |
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331 | \begin{itemize} |
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332 | \item<5->{requires a batch queueing system (+ ssh/scp access)} |
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333 | \end{itemize} |
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334 | \end{itemize} |
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335 | \end{frame} |
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336 | |
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337 | %Folie 15 |
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338 | \begin{frame} |
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339 | \frametitle{PALM - Scripts for Operating} |
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340 | {\scriptsize PALM is operated by two scripts, named \textbf{mbuild} and \textbf{mrun}. \textbf{mrun} itself calls some helper programs and, if a batch job is to be submitted, the script \textbf{subjob}.} |
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341 | \begin{itemize} |
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342 | \item<2->{\textbf{mrun}} |
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343 | \begin{itemize} |
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344 | \item<3->{{\scriptsize script for running PALM (interactive or batch)}} |
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345 | \end{itemize} |
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346 | \item<4->{\textbf{mbuild}} |
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347 | \begin{itemize} |
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348 | \item<5->{{\scriptsize script for generating a pre-compiled PALM version (object files)}} |
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349 | \end{itemize} |
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350 | \item<6->{\textbf{subjob}} |
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351 | \begin{itemize} |
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352 | \item<7->{{\scriptsize script for generating an submitting batch jobs}} |
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353 | \end{itemize} |
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354 | \item<8->{\textbf{helper programs}} |
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355 | \begin{itemize} |
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356 | \item<9->{{\scriptsize small FORTRAN programs, needed e.g. for interpreting the configuration file and for collecting output data (\texttt{interpret-config.x}, \texttt{combine-plot-fields.x})}} |
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357 | \end{itemize} |
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358 | \end{itemize} |
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359 | |
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360 | \tikzstyle{white} = [rectangle, text width=0.25\textwidth, font=\scriptsize] |
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361 | \tikzstyle{white1} = [rectangle, text width=0.95\textwidth, font=\scriptsize] |
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362 | \tikzstyle{line} = [draw, -] |
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363 | \tikzstyle{green} = [rectangle, draw, fill=green!20, text width=0.15\textwidth, font=\scriptsize] |
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364 | |
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365 | \begin{tikzpicture}[auto, node distance=0] |
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366 | \uncover<10->{\node [white] (first) {{Location of scripts:}};} |
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367 | \uncover<11->{\node [green, right=0.5cm of first] (second) {\textbf{trunk/} };} |
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368 | \uncover<11->{\node [white, right=0.5cm of second] (third) {{}};} |
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369 | \uncover<11->{\node [green, below=0.15cm of third] (fourth) {\textbf{SCRIPTS/}};} |
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370 | \path<11-> [line] (second.east) -- (fourth.west); |
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371 | \uncover<11->{\node [white1, below=0.65cm of second] (fifth) {{The scripts have a large number of options. A short summary of available options can be listed by giving the question mark as the only option, e.g. \texttt{mrun ?}}};} |
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372 | \end{tikzpicture} |
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373 | \end{frame} |
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374 | |
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375 | %Folie 16 |
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376 | \begin{frame} |
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377 | \frametitle{PALM - Configuration File} |
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378 | {\scriptsize \textbf{mrun and mbuild} require a lot of settings (which depend on the respective computer system used), which have to be given in a configuration file with default name \texttt{.mrun.config}}\\ |
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379 | \begin{itemize} |
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380 | \item<1->{\textbf{Main purposes of the configuration file:}} |
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381 | \begin{itemize} |
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382 | \item<2->{setting of compiler options} |
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383 | \item<3->{setting of paths for libraries (e.g. netCDF library)} |
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384 | \item<4->{setting of environment variables} |
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385 | \item<5->{definition of (UNIX-)commands to be executed before or after PALM execution} |
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386 | \item<6->{handling of input/output files by file connection statements} |
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387 | \end{itemize} |
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388 | \end{itemize} |
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389 | |
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390 | \tikzstyle{white} = [rectangle, text width=0.3\textwidth, font=\scriptsize] |
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391 | \tikzstyle{yellow} = [rectangle, draw, fill=yellow!20, text width=0.2\textwidth, font=\scriptsize] |
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392 | \tikzstyle{line} = [draw, -] |
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393 | \tikzstyle{green} = [rectangle, draw, fill=green!20, text width=0.2\textwidth, font=\scriptsize] |
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394 | |
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395 | \begin{tikzpicture}[auto, node distance=0] |
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396 | \uncover<7->{\node [white] (first) {{Default position for \\\texttt{.mrun.config}:}};} |
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397 | \uncover<8->{\node [yellow, right=0.2cm of first] (second) {\textbf{home/} };} |
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398 | \uncover<9->{\node [yellow, right=0.25cm of second] (third) {\textbf{palm/}};} |
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399 | \uncover<10->{\node [yellow, right=0.25cm of third] (fourth) {\textbf{current-version/}};} |
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400 | \path<9-> [line] (second.east) -- (third.west); |
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401 | \path<10-> [line] (third.east) -- (fourth.west); |
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402 | \uncover<11->{\node [white, below=0.15cm of first] (fifth) {{A default version of this file \texttt{.mrun.config.default} \\(to be adjusted by the user) can be found in:}};} |
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403 | \uncover<12->{\node [green, below=0.35cm of second] (sixth) {\textbf{trunk/}};} |
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404 | \uncover<13->{\node [green, below=0.7cm of third] (seventh) {\textbf{SCRIPTS/}};} |
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405 | \path<13-> [line] (sixth.east) -- (seventh.west); |
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406 | \end{tikzpicture} |
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407 | \end{frame} |
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408 | |
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409 | %Folie 17 |
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410 | \begin{frame} |
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411 | \frametitle{PALM - Other Requirements for Running} |
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412 | |
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413 | \tikzstyle{alert} = [rectangle, draw, text width=0.8\textwidth, font=\scriptsize] |
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414 | |
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415 | \begin{tikzpicture}[auto, node distance=0] |
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416 | \uncover<2->{\node [alert] (first) {\textbf{The following things are not provided with the download!}};} |
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417 | \end{tikzpicture} |
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418 | |
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419 | \begin{itemize} |
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420 | \item<3->{Korn-Shell (/bin/ksh), either AT and T or public domain} |
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421 | \item<4->{subversion, a version control system (www.tigris.org)} |
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422 | \begin{itemize} |
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423 | \item<5->{needed for downloading the PALM code} |
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424 | \end{itemize} |
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425 | \item<6->{FORTRAN 90/95 compiler} |
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426 | \item<7->{MPI-library (must fit to the compiler!), MPI-2 not required} |
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427 | \item<8->{netCDF-library (see www.unidata.ucar.edu/software/netcdf/)} |
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428 | \begin{itemize} |
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429 | \item<9->{needed for data output} |
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430 | \end{itemize} |
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431 | \item<10->{graphics software capable to read netCDF data format} |
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432 | \begin{itemize} |
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433 | \item<11->{e.g. NCL, IDL, ferret} |
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434 | \end{itemize} |
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435 | \item<12->{Batch-system} |
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436 | \item<13->{ssh/scp connection to the remote host (both ways)} |
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437 | \end{itemize} |
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438 | \end{frame} |
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439 | |
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440 | \end{document} |
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