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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3454

Last change on this file since 3454 was 3448, checked in by kanani, 6 years ago
Implementation of human thermal indices (from branch biomet_p2 at r3444)
Property svn:keywords set to `Id`
File size: 31.6 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 3448 2018-10-29 18:14:31Z schwenkel $
27	! Adjustment of biometeorology calls
28	!
29	! 3421 2018-10-24 18:39:32Z gronemeier
30	! Renamed output variables
31	!
32	! 3419 2018-10-24 17:27:31Z gronemeier
33	! bugfix: nx, ny are required in non-parallel case
34	!
35	! 3337 2018-10-12 15:17:09Z kanani
36	! (from branch resler)
37	! Add Biometeorology
38	!
39	! 3294 2018-10-01 02:37:10Z raasch
40	! changes concerning modularization of ocean option
41	!
42	! 3274 2018-09-24 15:42:55Z knoop
43	! Modularization of all bulk cloud physics code components
44	!
45	! 3241 2018-09-12 15:02:00Z raasch
46	! unused variables and format statements removed
47	!
48	! 3049 2018-05-29 13:52:36Z Giersch
49	! Error messages revised
50	!
51	! 3045 2018-05-28 07:55:41Z Giersch
52	! Error message revised
53	!
54	! 3014 2018-05-09 08:42:38Z maronga
55	! Added nzb_do and nzt_do for some modules for 3d output
56	!
57	! 3004 2018-04-27 12:33:25Z Giersch
58	! Allocation checks implemented (averaged data will be assigned to fill values
59	! if no allocation happened so far)
60	!
61	! 2967 2018-04-13 11:22:08Z raasch
62	! bugfix: missing parallel cpp-directives added
63	!
64	! 2817 2018-02-19 16:32:21Z knoop
65	! Preliminary gust module interface implemented
66	!
67	! 2766 2018-01-22 17:17:47Z kanani
68	! Removed preprocessor directive __chem
69	!
70	! 2756 2018-01-16 18:11:14Z suehring
71	! Fill values for 3D output of chemical species introduced.
72	!
73	! 2746 2018-01-15 12:06:04Z suehring
74	! Move flag plant canopy to modules
75	!
76	! 2718 2018-01-02 08:49:38Z maronga
77	! Corrected "Former revisions" section
78	!
79	! 2696 2017-12-14 17:12:51Z kanani
80	! Change in file header (GPL part)
81	! Implementation of turbulence_closure_mod (TG)
82	! Implementation of chemistry module (FK)
83	! Set fill values at topography grid points or e.g. non-natural-type surface
84	! in case of LSM output (MS)
85	!
86	! 2512 2017-10-04 08:26:59Z raasch
87	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
88	! no output of ghost layer data
89	!
90	! 2292 2017-06-20 09:51:42Z schwenkel
91	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
92	! includes two more prognostic equations for cloud drop concentration (nc)
93	! and cloud water content (qc).
94	!
95	! 2233 2017-05-30 18:08:54Z suehring
96	!
97	! 2232 2017-05-30 17:47:52Z suehring
98	! Adjustments to new topography concept
99	!
100	! 2209 2017-04-19 09:34:46Z kanani
101	! Added plant canopy model output
102	!
103	! 2031 2016-10-21 15:11:58Z knoop
104	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
105	!
106	! 2011 2016-09-19 17:29:57Z kanani
107	! Flag urban_surface is now defined in module control_parameters,
108	! changed prefix for urban surface model output to "usm_",
109	! introduced control parameter varnamelength for LEN of trimvar.
110	!
111	! 2007 2016-08-24 15:47:17Z kanani
112	! Added support for new urban surface model (temporary modifications of
113	! SELECT CASE ( ) necessary, see variable trimvar)
114	!
115	! 2000 2016-08-20 18:09:15Z knoop
116	! Forced header and separation lines into 80 columns
117	!
118	! 1980 2016-07-29 15:51:57Z suehring
119	! Bugfix, in order to steer user-defined output, setting flag found explicitly
120	! to .F.
121	!
122	! 1976 2016-07-27 13:28:04Z maronga
123	! Output of radiation quantities is now done directly in the respective module
124	!
125	! 1972 2016-07-26 07:52:02Z maronga
126	! Output of land surface quantities is now done directly in the respective module.
127	! Unnecessary directive __parallel removed.
128	!
129	! 1960 2016-07-12 16:34:24Z suehring
130	! Scalar surface flux added
131	!
132	! 1849 2016-04-08 11:33:18Z hoffmann
133	! prr moved to arrays_3d
134	!
135	! 1822 2016-04-07 07:49:42Z hoffmann
136	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
137	!
138	! 1808 2016-04-05 19:44:00Z raasch
139	! test output removed
140	!
141	! 1783 2016-03-06 18:36:17Z raasch
142	! name change of netcdf routines and module + related changes
143	!
144	! 1745 2016-02-05 13:06:51Z gronemeier
145	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
146	!
147	! 1691 2015-10-26 16:17:44Z maronga
148	! Added output of radiative heating rates for RRTMG
149	!
150	! 1682 2015-10-07 23:56:08Z knoop
151	! Code annotations made doxygen readable
152	!
153	! 1585 2015-04-30 07:05:52Z maronga
154	! Added support for RRTMG
155	!
156	! 1551 2015-03-03 14:18:16Z maronga
157	! Added suppport for land surface model and radiation model output. In the course
158	! of this action, the limits for vertical loops have been changed (from nzb and
159	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
160	! Moreover, a new vertical grid zs was introduced.
161	!
162	! 1359 2014-04-11 17:15:14Z hoffmann
163	! New particle structure integrated.
164	!
165	! 1353 2014-04-08 15:21:23Z heinze
166	! REAL constants provided with KIND-attribute
167	!
168	! 1327 2014-03-21 11:00:16Z raasch
169	! parts concerning avs output removed,
170	! -netcdf output queries
171	!
172	! 1320 2014-03-20 08:40:49Z raasch
173	! ONLY-attribute added to USE-statements,
174	! kind-parameters added to all INTEGER and REAL declaration statements,
175	! kinds are defined in new module kinds,
176	! old module precision_kind is removed,
177	! revision history before 2012 removed,
178	! comment fields (!:) to be used for variable explanations added to
179	! all variable declaration statements
180	!
181	! 1318 2014-03-17 13:35:16Z raasch
182	! barrier argument removed from cpu_log,
183	! module interfaces removed
184	!
185	! 1308 2014-03-13 14:58:42Z fricke
186	! Check, if the limit of the time dimension is exceeded for parallel output
187	! To increase the performance for parallel output, the following is done:
188	! - Update of time axis is only done by PE0
189	!
190	! 1244 2013-10-31 08:16:56Z raasch
191	! Bugfix for index bounds in case of 3d-parallel output
192	!
193	! 1115 2013-03-26 18:16:16Z hoffmann
194	! ql is calculated by calc_liquid_water_content
195	!
196	! 1106 2013-03-04 05:31:38Z raasch
197	! array_kind renamed precision_kind
198	!
199	! 1076 2012-12-05 08:30:18Z hoffmann
200	! Bugfix in output of ql
201	!
202	! 1053 2012-11-13 17:11:03Z hoffmann
203	! +nr, qr, prr, qc and averaged quantities
204	!
205	! 1036 2012-10-22 13:43:42Z raasch
206	! code put under GPL (PALM 3.9)
207	!
208	! 1031 2012-10-19 14:35:30Z raasch
209	! netCDF4 without parallel file support implemented
210	!
211	! 1007 2012-09-19 14:30:36Z franke
212	! Bugfix: missing calculation of ql_vp added
213	!
214	! Revision 1.1 1997/09/03 06:29:36 raasch
215	! Initial revision
216	!
217	!
218	! Description:
219	! ------------
220	!> Output of the 3D-arrays in netCDF and/or AVS format.
221	!------------------------------------------------------------------------------!
222	SUBROUTINE data_output_3d( av )
223
224
225	USE arrays_3d, &
226	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
227	tend, u, v, vpt, w
228
229	USE averaging
230
231	USE basic_constants_and_equations_mod, &
232	ONLY: lv_d_cp
233
234	USE biometeorology_mod, &
235	ONLY: biom_data_output_3d
236
237	USE bulk_cloud_model_mod, &
238	ONLY: bulk_cloud_model, bcm_data_output_3d
239
240	USE chemistry_model_mod, &
241	ONLY: chem_data_output_3d
242
243	USE control_parameters, &
244	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
245	io_blocks, io_group, land_surface, message_string, &
246	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
247	psolver, simulated_time, time_since_reference_point, &
248	urban_surface, varnamelength
249
250	USE cpulog, &
251	ONLY: log_point, cpu_log
252
253	USE gust_mod, &
254	ONLY: gust_data_output_3d, gust_module_enabled
255
256	#if defined( __parallel )
257	USE indices, &
258	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
259	wall_flags_0
260	#else
261	USE indices, &
262	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
263	nzt, wall_flags_0
264	#endif
265
266	USE kinds
267
268	USE land_surface_model_mod, &
269	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
270
271	#if defined( __netcdf )
272	USE NETCDF
273	#endif
274
275	USE netcdf_interface, &
276	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
277	netcdf_data_format, netcdf_handle_error
278
279	USE ocean_mod, &
280	ONLY: ocean_data_output_3d
281
282	USE particle_attributes, &
283	ONLY: grid_particles, number_of_particles, particles, &
284	particle_advection_start, prt_count
285
286	USE pegrid
287
288	USE plant_canopy_model_mod, &
289	ONLY: pcm_data_output_3d
290
291	USE radiation_model_mod, &
292	ONLY: nzub, nzut, radiation, radiation_data_output_3d
293
294	USE turbulence_closure_mod, &
295	ONLY: tcm_data_output_3d
296
297	USE urban_surface_mod, &
298	ONLY: usm_data_output_3d
299
300
301	IMPLICIT NONE
302
303	INTEGER(iwp) :: av !<
304	INTEGER(iwp) :: flag_nr !< number of masking flag
305	INTEGER(iwp) :: i !<
306	INTEGER(iwp) :: if !<
307	INTEGER(iwp) :: j !<
308	INTEGER(iwp) :: k !<
309	INTEGER(iwp) :: n !<
310	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
311	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
312
313	LOGICAL :: found !<
314	LOGICAL :: resorted !<
315
316	REAL(wp) :: mean_r !<
317	REAL(wp) :: s_r2 !<
318	REAL(wp) :: s_r3 !<
319
320	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
321
322	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
323
324	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
325
326	!
327	!-- Return, if nothing to output
328	IF ( do3d_no(av) == 0 ) RETURN
329
330	CALL cpu_log (log_point(14),'data_output_3d','start')
331
332	!
333	!-- Open output file.
334	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
335	!-- own file and writes the data of its subdomain in binary format. After the
336	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
337	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
338	IF ( netcdf_data_format < 5 ) THEN
339	#if defined( __parallel )
340	CALL check_open( 30 )
341	#endif
342	IF ( myid == 0 ) CALL check_open( 106+av*10 )
343	ELSE
344	CALL check_open( 106+av*10 )
345	ENDIF
346
347	!
348	!-- For parallel netcdf output the time axis must be limited. Return, if this
349	!-- limit is exceeded. This could be the case, if the simulated time exceeds
350	!-- the given end time by the length of the given output interval.
351	IF ( netcdf_data_format > 4 ) THEN
352	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
353	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
354	simulated_time, '&because the maximum ', &
355	'number of output time levels is ', &
356	'exceeded.'
357	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
358	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
359	RETURN
360	ENDIF
361	ENDIF
362
363	!
364	!-- Update the netCDF time axis
365	!-- In case of parallel output, this is only done by PE0 to increase the
366	!-- performance.
367	#if defined( __netcdf )
368	do3d_time_count(av) = do3d_time_count(av) + 1
369	IF ( myid == 0 ) THEN
370	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
371	(/ time_since_reference_point /), &
372	start = (/ do3d_time_count(av) /), &
373	count = (/ 1 /) )
374	CALL netcdf_handle_error( 'data_output_3d', 376 )
375	ENDIF
376	#endif
377
378	!
379	!-- Loop over all variables to be written.
380	if = 1
381
382	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
383
384	!
385	!-- Temporary solution to account for data output within the new urban
386	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
387	!-- Store the array chosen on the temporary array.
388	trimvar = TRIM( do3d(av,if) )
389	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
390	trimvar = 'usm_output'
391	resorted = .TRUE.
392	nzb_do = nzub
393	nzt_do = nzut
394	ELSE
395	resorted = .FALSE.
396	nzb_do = nzb
397	nzt_do = nz_do3d
398	ENDIF
399	!
400	!-- Set flag to steer output of radiation, land-surface, or user-defined
401	!-- quantities
402	found = .FALSE.
403	!
404	!-- Allocate a temporary array with the desired output dimensions.
405	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
406	!
407	!-- Before each output, set array local_pf to fill value
408	local_pf = fill_value
409	!
410	!-- Set masking flag for topography for not resorted arrays
411	flag_nr = 0
412
413	SELECT CASE ( trimvar )
414
415	CASE ( 'e' )
416	IF ( av == 0 ) THEN
417	to_be_resorted => e
418	ELSE
419	IF ( .NOT. ALLOCATED( e_av ) ) THEN
420	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
421	e_av = REAL( fill_value, KIND = wp )
422	ENDIF
423	to_be_resorted => e_av
424	ENDIF
425
426	CASE ( 'thetal' )
427	IF ( av == 0 ) THEN
428	to_be_resorted => pt
429	ELSE
430	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
431	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
432	lpt_av = REAL( fill_value, KIND = wp )
433	ENDIF
434	to_be_resorted => lpt_av
435	ENDIF
436
437	CASE ( 'p' )
438	IF ( av == 0 ) THEN
439	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
440	to_be_resorted => p
441	ELSE
442	IF ( .NOT. ALLOCATED( p_av ) ) THEN
443	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
444	p_av = REAL( fill_value, KIND = wp )
445	ENDIF
446	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
447	to_be_resorted => p_av
448	ENDIF
449
450	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
451	IF ( av == 0 ) THEN
452	IF ( simulated_time >= particle_advection_start ) THEN
453	tend = prt_count
454	ELSE
455	tend = 0.0_wp
456	ENDIF
457	DO i = nxl, nxr
458	DO j = nys, nyn
459	DO k = nzb_do, nzt_do
460	local_pf(i,j,k) = tend(k,j,i)
461	ENDDO
462	ENDDO
463	ENDDO
464	resorted = .TRUE.
465	ELSE
466	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
467	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
468	pc_av = REAL( fill_value, KIND = wp )
469	ENDIF
470	to_be_resorted => pc_av
471	ENDIF
472
473	CASE ( 'pr' ) ! mean particle radius (effective radius)
474	IF ( av == 0 ) THEN
475	IF ( simulated_time >= particle_advection_start ) THEN
476	DO i = nxl, nxr
477	DO j = nys, nyn
478	DO k = nzb_do, nzt_do
479	number_of_particles = prt_count(k,j,i)
480	IF (number_of_particles <= 0) CYCLE
481	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
482	s_r2 = 0.0_wp
483	s_r3 = 0.0_wp
484	DO n = 1, number_of_particles
485	IF ( particles(n)%particle_mask ) THEN
486	s_r2 = s_r2 + particles(n)%radius*2 &
487	particles(n)%weight_factor
488	s_r3 = s_r3 + particles(n)%radius*3 &
489	particles(n)%weight_factor
490	ENDIF
491	ENDDO
492	IF ( s_r2 > 0.0_wp ) THEN
493	mean_r = s_r3 / s_r2
494	ELSE
495	mean_r = 0.0_wp
496	ENDIF
497	tend(k,j,i) = mean_r
498	ENDDO
499	ENDDO
500	ENDDO
501	ELSE
502	tend = 0.0_wp
503	ENDIF
504	DO i = nxl, nxr
505	DO j = nys, nyn
506	DO k = nzb_do, nzt_do
507	local_pf(i,j,k) = tend(k,j,i)
508	ENDDO
509	ENDDO
510	ENDDO
511	resorted = .TRUE.
512	ELSE
513	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
514	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
515	pr_av = REAL( fill_value, KIND = wp )
516	ENDIF
517	to_be_resorted => pr_av
518	ENDIF
519
520	CASE ( 'theta' )
521	IF ( av == 0 ) THEN
522	IF ( .NOT. bulk_cloud_model ) THEN
523	to_be_resorted => pt
524	ELSE
525	DO i = nxl, nxr
526	DO j = nys, nyn
527	DO k = nzb_do, nzt_do
528	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
529	d_exner(k) * &
530	ql(k,j,i)
531	ENDDO
532	ENDDO
533	ENDDO
534	resorted = .TRUE.
535	ENDIF
536	ELSE
537	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
538	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
539	pt_av = REAL( fill_value, KIND = wp )
540	ENDIF
541	to_be_resorted => pt_av
542	ENDIF
543
544	CASE ( 'q' )
545	IF ( av == 0 ) THEN
546	to_be_resorted => q
547	ELSE
548	IF ( .NOT. ALLOCATED( q_av ) ) THEN
549	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
550	q_av = REAL( fill_value, KIND = wp )
551	ENDIF
552	to_be_resorted => q_av
553	ENDIF
554
555	CASE ( 'ql' )
556	IF ( av == 0 ) THEN
557	to_be_resorted => ql
558	ELSE
559	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
560	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
561	ql_av = REAL( fill_value, KIND = wp )
562	ENDIF
563	to_be_resorted => ql_av
564	ENDIF
565
566	CASE ( 'ql_c' )
567	IF ( av == 0 ) THEN
568	to_be_resorted => ql_c
569	ELSE
570	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
571	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
572	ql_c_av = REAL( fill_value, KIND = wp )
573	ENDIF
574	to_be_resorted => ql_c_av
575	ENDIF
576
577	CASE ( 'ql_v' )
578	IF ( av == 0 ) THEN
579	to_be_resorted => ql_v
580	ELSE
581	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
582	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
583	ql_v_av = REAL( fill_value, KIND = wp )
584	ENDIF
585	to_be_resorted => ql_v_av
586	ENDIF
587
588	CASE ( 'ql_vp' )
589	IF ( av == 0 ) THEN
590	IF ( simulated_time >= particle_advection_start ) THEN
591	DO i = nxl, nxr
592	DO j = nys, nyn
593	DO k = nzb_do, nzt_do
594	number_of_particles = prt_count(k,j,i)
595	IF (number_of_particles <= 0) CYCLE
596	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
597	DO n = 1, number_of_particles
598	IF ( particles(n)%particle_mask ) THEN
599	tend(k,j,i) = tend(k,j,i) + &
600	particles(n)%weight_factor / &
601	prt_count(k,j,i)
602	ENDIF
603	ENDDO
604	ENDDO
605	ENDDO
606	ENDDO
607	ELSE
608	tend = 0.0_wp
609	ENDIF
610	DO i = nxl, nxr
611	DO j = nys, nyn
612	DO k = nzb_do, nzt_do
613	local_pf(i,j,k) = tend(k,j,i)
614	ENDDO
615	ENDDO
616	ENDDO
617	resorted = .TRUE.
618	ELSE
619	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
620	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
621	ql_vp_av = REAL( fill_value, KIND = wp )
622	ENDIF
623	to_be_resorted => ql_vp_av
624	ENDIF
625
626	CASE ( 'qv' )
627	IF ( av == 0 ) THEN
628	DO i = nxl, nxr
629	DO j = nys, nyn
630	DO k = nzb_do, nzt_do
631	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
632	ENDDO
633	ENDDO
634	ENDDO
635	resorted = .TRUE.
636	ELSE
637	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
638	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
639	qv_av = REAL( fill_value, KIND = wp )
640	ENDIF
641	to_be_resorted => qv_av
642	ENDIF
643
644	CASE ( 's' )
645	IF ( av == 0 ) THEN
646	to_be_resorted => s
647	ELSE
648	IF ( .NOT. ALLOCATED( s_av ) ) THEN
649	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
650	s_av = REAL( fill_value, KIND = wp )
651	ENDIF
652	to_be_resorted => s_av
653	ENDIF
654
655	CASE ( 'u' )
656	flag_nr = 1
657	IF ( av == 0 ) THEN
658	to_be_resorted => u
659	ELSE
660	IF ( .NOT. ALLOCATED( u_av ) ) THEN
661	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
662	u_av = REAL( fill_value, KIND = wp )
663	ENDIF
664	to_be_resorted => u_av
665	ENDIF
666
667	CASE ( 'v' )
668	flag_nr = 2
669	IF ( av == 0 ) THEN
670	to_be_resorted => v
671	ELSE
672	IF ( .NOT. ALLOCATED( v_av ) ) THEN
673	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
674	v_av = REAL( fill_value, KIND = wp )
675	ENDIF
676	to_be_resorted => v_av
677	ENDIF
678
679	CASE ( 'thetav' )
680	IF ( av == 0 ) THEN
681	to_be_resorted => vpt
682	ELSE
683	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
684	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
685	vpt_av = REAL( fill_value, KIND = wp )
686	ENDIF
687	to_be_resorted => vpt_av
688	ENDIF
689
690	CASE ( 'w' )
691	flag_nr = 3
692	IF ( av == 0 ) THEN
693	to_be_resorted => w
694	ELSE
695	IF ( .NOT. ALLOCATED( w_av ) ) THEN
696	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
697	w_av = REAL( fill_value, KIND = wp )
698	ENDIF
699	to_be_resorted => w_av
700	ENDIF
701	!
702	!-- Block of urban surface model outputs
703	CASE ( 'usm_output' )
704	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
705	nzb_do, nzt_do )
706
707	CASE DEFAULT
708
709	!
710	!-- Quantities of other modules
711	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
712	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
713	nzb_do, nzt_do )
714	resorted = .TRUE.
715	ENDIF
716
717	IF ( .NOT. found .AND. air_chemistry ) THEN
718	CALL chem_data_output_3d( av, do3d(av,if), found, &
719	local_pf, fill_value, nzb_do, nzt_do )
720	resorted = .TRUE.
721	ENDIF
722
723	IF ( .NOT. found .AND. gust_module_enabled ) THEN
724	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
725	nzb_do, nzt_do )
726	resorted = .TRUE.
727	ENDIF
728
729	IF ( .NOT. found .AND. land_surface ) THEN
730	!
731	!-- For soil model quantities, it is required to re-allocate local_pf
732	nzb_do = nzb_soil
733	nzt_do = nzt_soil
734
735	DEALLOCATE ( local_pf )
736	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
737	local_pf = fill_value
738
739	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
740	resorted = .TRUE.
741
742	!
743	!-- If no soil model variable was found, re-allocate local_pf
744	IF ( .NOT. found ) THEN
745	nzb_do = nzb
746	nzt_do = nz_do3d
747
748	DEALLOCATE ( local_pf )
749	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
750	ENDIF
751
752	ENDIF
753
754	IF ( .NOT. found .AND. ocean_mode ) THEN
755	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
756	nzb_do, nzt_do )
757	resorted = .TRUE.
758	ENDIF
759
760	IF ( .NOT. found .AND. plant_canopy ) THEN
761	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
762	fill_value, nzb_do, nzt_do )
763	resorted = .TRUE.
764	ENDIF
765
766	IF ( .NOT. found .AND. radiation ) THEN
767	CALL radiation_data_output_3d( av, do3d(av,if), found, &
768	local_pf, nzb_do, nzt_do )
769	resorted = .TRUE.
770	ENDIF
771
772	IF ( .NOT. found ) THEN
773	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
774	nzb_do, nzt_do )
775	resorted = .TRUE.
776	ENDIF
777
778	IF ( .NOT. found .AND. biometeorology ) THEN
779	CALL biom_data_output_3d( av, do3d(av,if), found, local_pf, &
780	nzb_do, nzt_do )
781	ENDIF
782
783	!
784	!-- User defined quantities
785	IF ( .NOT. found ) THEN
786	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
787	nzb_do, nzt_do )
788	resorted = .TRUE.
789	ENDIF
790
791	IF ( .NOT. found ) THEN
792	message_string = 'no output available for: ' // &
793	TRIM( do3d(av,if) )
794	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
795	ENDIF
796
797	END SELECT
798
799	!
800	!-- Resort the array to be output, if not done above
801	IF ( .NOT. resorted ) THEN
802	DO i = nxl, nxr
803	DO j = nys, nyn
804	DO k = nzb_do, nzt_do
805	local_pf(i,j,k) = MERGE( &
806	to_be_resorted(k,j,i), &
807	REAL( fill_value, KIND = wp ), &
808	BTEST( wall_flags_0(k,j,i), flag_nr ) )
809	ENDDO
810	ENDDO
811	ENDDO
812	ENDIF
813
814	!
815	!-- Output of the 3D-array
816	#if defined( __parallel )
817	IF ( netcdf_data_format < 5 ) THEN
818	!
819	!-- Non-parallel netCDF output. Data is output in parallel in
820	!-- FORTRAN binary format here, and later collected into one file by
821	!-- combine_plot_fields
822	IF ( myid == 0 ) THEN
823	WRITE ( 30 ) time_since_reference_point, &
824	do3d_time_count(av), av
825	ENDIF
826	DO i = 0, io_blocks-1
827	IF ( i == io_group ) THEN
828	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
829	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
830	ENDIF
831
832	CALL MPI_BARRIER( comm2d, ierr )
833
834	ENDDO
835
836	ELSE
837	#if defined( __netcdf )
838	!
839	!-- Parallel output in netCDF4/HDF5 format.
840	! IF ( nxr == nx .AND. nyn /= ny ) THEN
841	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
842	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
843	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
844	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
845	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
846	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
847	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
848	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
849	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
850	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
851	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
852	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
853	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
854	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
855	! ELSE
856	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
857	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
858	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
859	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
860	! ENDIF
861	CALL netcdf_handle_error( 'data_output_3d', 386 )
862	#endif
863	ENDIF
864	#else
865	#if defined( __netcdf )
866	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
867	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
868	start = (/ 1, 1, 1, do3d_time_count(av) /), &
869	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
870	CALL netcdf_handle_error( 'data_output_3d', 446 )
871	#endif
872	#endif
873
874	if = if + 1
875
876	!
877	!-- Deallocate temporary array
878	DEALLOCATE ( local_pf )
879
880	ENDDO
881
882	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
883
884	END SUBROUTINE data_output_3d

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