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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2865

Last change on this file since 2865 was 2817, checked in by knoop, 7 years ago
Preliminary gust module interface implemented
Property svn:keywords set to `Id`
File size: 27.7 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 2817 2018-02-19 16:32:21Z kanani $
27	! Preliminary gust module interface implemented
28	!
29	! 2766 2018-01-22 17:17:47Z kanani
30	! Removed preprocessor directive __chem
31	!
32	! 2756 2018-01-16 18:11:14Z suehring
33	! Fill values for 3D output of chemical species introduced.
34	!
35	! 2746 2018-01-15 12:06:04Z suehring
36	! Move flag plant canopy to modules
37	!
38	! 2718 2018-01-02 08:49:38Z maronga
39	! Corrected "Former revisions" section
40	!
41	! 2696 2017-12-14 17:12:51Z kanani
42	! Change in file header (GPL part)
43	! Implementation of turbulence_closure_mod (TG)
44	! Implementation of chemistry module (FK)
45	! Set fill values at topography grid points or e.g. non-natural-type surface
46	! in case of LSM output (MS)
47	!
48	! 2512 2017-10-04 08:26:59Z raasch
49	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
50	! no output of ghost layer data
51	!
52	! 2292 2017-06-20 09:51:42Z schwenkel
53	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
54	! includes two more prognostic equations for cloud drop concentration (nc)
55	! and cloud water content (qc).
56	!
57	! 2233 2017-05-30 18:08:54Z suehring
58	!
59	! 2232 2017-05-30 17:47:52Z suehring
60	! Adjustments to new topography concept
61	!
62	! 2209 2017-04-19 09:34:46Z kanani
63	! Added plant canopy model output
64	!
65	! 2031 2016-10-21 15:11:58Z knoop
66	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
67	!
68	! 2011 2016-09-19 17:29:57Z kanani
69	! Flag urban_surface is now defined in module control_parameters,
70	! changed prefix for urban surface model output to "usm_",
71	! introduced control parameter varnamelength for LEN of trimvar.
72	!
73	! 2007 2016-08-24 15:47:17Z kanani
74	! Added support for new urban surface model (temporary modifications of
75	! SELECT CASE ( ) necessary, see variable trimvar)
76	!
77	! 2000 2016-08-20 18:09:15Z knoop
78	! Forced header and separation lines into 80 columns
79	!
80	! 1980 2016-07-29 15:51:57Z suehring
81	! Bugfix, in order to steer user-defined output, setting flag found explicitly
82	! to .F.
83	!
84	! 1976 2016-07-27 13:28:04Z maronga
85	! Output of radiation quantities is now done directly in the respective module
86	!
87	! 1972 2016-07-26 07:52:02Z maronga
88	! Output of land surface quantities is now done directly in the respective module.
89	! Unnecessary directive __parallel removed.
90	!
91	! 1960 2016-07-12 16:34:24Z suehring
92	! Scalar surface flux added
93	!
94	! 1849 2016-04-08 11:33:18Z hoffmann
95	! prr moved to arrays_3d
96	!
97	! 1822 2016-04-07 07:49:42Z hoffmann
98	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
99	!
100	! 1808 2016-04-05 19:44:00Z raasch
101	! test output removed
102	!
103	! 1783 2016-03-06 18:36:17Z raasch
104	! name change of netcdf routines and module + related changes
105	!
106	! 1745 2016-02-05 13:06:51Z gronemeier
107	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
108	!
109	! 1691 2015-10-26 16:17:44Z maronga
110	! Added output of radiative heating rates for RRTMG
111	!
112	! 1682 2015-10-07 23:56:08Z knoop
113	! Code annotations made doxygen readable
114	!
115	! 1585 2015-04-30 07:05:52Z maronga
116	! Added support for RRTMG
117	!
118	! 1551 2015-03-03 14:18:16Z maronga
119	! Added suppport for land surface model and radiation model output. In the course
120	! of this action, the limits for vertical loops have been changed (from nzb and
121	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
122	! Moreover, a new vertical grid zs was introduced.
123	!
124	! 1359 2014-04-11 17:15:14Z hoffmann
125	! New particle structure integrated.
126	!
127	! 1353 2014-04-08 15:21:23Z heinze
128	! REAL constants provided with KIND-attribute
129	!
130	! 1327 2014-03-21 11:00:16Z raasch
131	! parts concerning avs output removed,
132	! -netcdf output queries
133	!
134	! 1320 2014-03-20 08:40:49Z raasch
135	! ONLY-attribute added to USE-statements,
136	! kind-parameters added to all INTEGER and REAL declaration statements,
137	! kinds are defined in new module kinds,
138	! old module precision_kind is removed,
139	! revision history before 2012 removed,
140	! comment fields (!:) to be used for variable explanations added to
141	! all variable declaration statements
142	!
143	! 1318 2014-03-17 13:35:16Z raasch
144	! barrier argument removed from cpu_log,
145	! module interfaces removed
146	!
147	! 1308 2014-03-13 14:58:42Z fricke
148	! Check, if the limit of the time dimension is exceeded for parallel output
149	! To increase the performance for parallel output, the following is done:
150	! - Update of time axis is only done by PE0
151	!
152	! 1244 2013-10-31 08:16:56Z raasch
153	! Bugfix for index bounds in case of 3d-parallel output
154	!
155	! 1115 2013-03-26 18:16:16Z hoffmann
156	! ql is calculated by calc_liquid_water_content
157	!
158	! 1106 2013-03-04 05:31:38Z raasch
159	! array_kind renamed precision_kind
160	!
161	! 1076 2012-12-05 08:30:18Z hoffmann
162	! Bugfix in output of ql
163	!
164	! 1053 2012-11-13 17:11:03Z hoffmann
165	! +nr, qr, prr, qc and averaged quantities
166	!
167	! 1036 2012-10-22 13:43:42Z raasch
168	! code put under GPL (PALM 3.9)
169	!
170	! 1031 2012-10-19 14:35:30Z raasch
171	! netCDF4 without parallel file support implemented
172	!
173	! 1007 2012-09-19 14:30:36Z franke
174	! Bugfix: missing calculation of ql_vp added
175	!
176	! Revision 1.1 1997/09/03 06:29:36 raasch
177	! Initial revision
178	!
179	!
180	! Description:
181	! ------------
182	!> Output of the 3D-arrays in netCDF and/or AVS format.
183	!------------------------------------------------------------------------------!
184	SUBROUTINE data_output_3d( av )
185
186
187	USE arrays_3d, &
188	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
189	sa, tend, u, v, vpt, w
190
191	USE averaging
192
193	USE chemistry_model_mod, &
194	ONLY: chem_data_output_3d
195
196	USE cloud_parameters, &
197	ONLY: l_d_cp, pt_d_t
198
199	USE control_parameters, &
200	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
201	io_blocks, io_group, land_surface, message_string, &
202	ntdim_3d, nz_do3d, plant_canopy, &
203	psolver, simulated_time, time_since_reference_point, &
204	urban_surface, varnamelength
205
206	USE cpulog, &
207	ONLY: log_point, cpu_log
208
209	USE gust_mod, &
210	ONLY: gust_data_output_3d, gust_module_enabled
211
212	USE indices, &
213	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
214
215	USE kinds
216
217	USE land_surface_model_mod, &
218	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
219
220	#if defined( __netcdf )
221	USE NETCDF
222	#endif
223
224	USE netcdf_interface, &
225	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
226	netcdf_data_format, netcdf_handle_error
227
228	USE particle_attributes, &
229	ONLY: grid_particles, number_of_particles, particles, &
230	particle_advection_start, prt_count
231
232	USE pegrid
233
234	USE plant_canopy_model_mod, &
235	ONLY: pcm_data_output_3d
236
237	USE radiation_model_mod, &
238	ONLY: nzub, nzut, radiation, radiation_data_output_3d
239
240	USE turbulence_closure_mod, &
241	ONLY: tcm_data_output_3d
242
243	USE urban_surface_mod, &
244	ONLY: usm_data_output_3d
245
246
247	IMPLICIT NONE
248
249	INTEGER(iwp) :: av !<
250	INTEGER(iwp) :: flag_nr !< number of masking flag
251	INTEGER(iwp) :: i !<
252	INTEGER(iwp) :: if !<
253	INTEGER(iwp) :: j !<
254	INTEGER(iwp) :: k !<
255	INTEGER(iwp) :: n !<
256	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
257	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
258
259	LOGICAL :: found !<
260	LOGICAL :: resorted !<
261
262	REAL(wp) :: mean_r !<
263	REAL(wp) :: s_r2 !<
264	REAL(wp) :: s_r3 !<
265
266	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
267
268	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
269
270	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
271
272	!
273	!-- Return, if nothing to output
274	IF ( do3d_no(av) == 0 ) RETURN
275
276	CALL cpu_log (log_point(14),'data_output_3d','start')
277
278	!
279	!-- Open output file.
280	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
281	!-- own file and writes the data of its subdomain in binary format. After the
282	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
283	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
284	IF ( netcdf_data_format < 5 ) THEN
285	CALL check_open( 30 )
286	IF ( myid == 0 ) CALL check_open( 106+av*10 )
287	ELSE
288	CALL check_open( 106+av*10 )
289	ENDIF
290
291	!
292	!-- For parallel netcdf output the time axis must be limited. Return, if this
293	!-- limit is exceeded. This could be the case, if the simulated time exceeds
294	!-- the given end time by the length of the given output interval.
295	IF ( netcdf_data_format > 4 ) THEN
296	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
297	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
298	simulated_time, '&because the maximum ', &
299	'number of output time levels is ', &
300	'exceeded.'
301	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
302	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
303	RETURN
304	ENDIF
305	ENDIF
306
307	!
308	!-- Update the netCDF time axis
309	!-- In case of parallel output, this is only done by PE0 to increase the
310	!-- performance.
311	#if defined( __netcdf )
312	do3d_time_count(av) = do3d_time_count(av) + 1
313	IF ( myid == 0 ) THEN
314	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
315	(/ time_since_reference_point /), &
316	start = (/ do3d_time_count(av) /), &
317	count = (/ 1 /) )
318	CALL netcdf_handle_error( 'data_output_3d', 376 )
319	ENDIF
320	#endif
321
322	!
323	!-- Loop over all variables to be written.
324	if = 1
325
326	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
327
328	!
329	!-- Temporary solution to account for data output within the new urban
330	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
331	!-- Store the array chosen on the temporary array.
332	trimvar = TRIM( do3d(av,if) )
333	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
334	trimvar = 'usm_output'
335	resorted = .TRUE.
336	nzb_do = nzub
337	nzt_do = nzut
338	ELSE
339	resorted = .FALSE.
340	nzb_do = nzb
341	nzt_do = nz_do3d
342	ENDIF
343	!
344	!-- Set flag to steer output of radiation, land-surface, or user-defined
345	!-- quantities
346	found = .FALSE.
347	!
348	!-- Allocate a temporary array with the desired output dimensions.
349	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
350	!
351	!-- Before each output, set array local_pf to fill value
352	local_pf = fill_value
353	!
354	!-- Set masking flag for topography for not resorted arrays
355	flag_nr = 0
356
357	SELECT CASE ( trimvar )
358
359	CASE ( 'e' )
360	IF ( av == 0 ) THEN
361	to_be_resorted => e
362	ELSE
363	to_be_resorted => e_av
364	ENDIF
365
366	CASE ( 'lpt' )
367	IF ( av == 0 ) THEN
368	to_be_resorted => pt
369	ELSE
370	to_be_resorted => lpt_av
371	ENDIF
372
373	CASE ( 'nc' )
374	IF ( av == 0 ) THEN
375	to_be_resorted => nc
376	ELSE
377	to_be_resorted => nc_av
378	ENDIF
379
380	CASE ( 'nr' )
381	IF ( av == 0 ) THEN
382	to_be_resorted => nr
383	ELSE
384	to_be_resorted => nr_av
385	ENDIF
386
387	CASE ( 'p' )
388	IF ( av == 0 ) THEN
389	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
390	to_be_resorted => p
391	ELSE
392	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
393	to_be_resorted => p_av
394	ENDIF
395
396	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
397	IF ( av == 0 ) THEN
398	IF ( simulated_time >= particle_advection_start ) THEN
399	tend = prt_count
400	ELSE
401	tend = 0.0_wp
402	ENDIF
403	DO i = nxl, nxr
404	DO j = nys, nyn
405	DO k = nzb_do, nzt_do
406	local_pf(i,j,k) = tend(k,j,i)
407	ENDDO
408	ENDDO
409	ENDDO
410	resorted = .TRUE.
411	ELSE
412	to_be_resorted => pc_av
413	ENDIF
414
415	CASE ( 'pr' ) ! mean particle radius (effective radius)
416	IF ( av == 0 ) THEN
417	IF ( simulated_time >= particle_advection_start ) THEN
418	DO i = nxl, nxr
419	DO j = nys, nyn
420	DO k = nzb_do, nzt_do
421	number_of_particles = prt_count(k,j,i)
422	IF (number_of_particles <= 0) CYCLE
423	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
424	s_r2 = 0.0_wp
425	s_r3 = 0.0_wp
426	DO n = 1, number_of_particles
427	IF ( particles(n)%particle_mask ) THEN
428	s_r2 = s_r2 + particles(n)%radius*2 &
429	particles(n)%weight_factor
430	s_r3 = s_r3 + particles(n)%radius*3 &
431	particles(n)%weight_factor
432	ENDIF
433	ENDDO
434	IF ( s_r2 > 0.0_wp ) THEN
435	mean_r = s_r3 / s_r2
436	ELSE
437	mean_r = 0.0_wp
438	ENDIF
439	tend(k,j,i) = mean_r
440	ENDDO
441	ENDDO
442	ENDDO
443	ELSE
444	tend = 0.0_wp
445	ENDIF
446	DO i = nxl, nxr
447	DO j = nys, nyn
448	DO k = nzb_do, nzt_do
449	local_pf(i,j,k) = tend(k,j,i)
450	ENDDO
451	ENDDO
452	ENDDO
453	resorted = .TRUE.
454	ELSE
455	to_be_resorted => pr_av
456	ENDIF
457
458	CASE ( 'prr' )
459	IF ( av == 0 ) THEN
460	DO i = nxl, nxr
461	DO j = nys, nyn
462	DO k = nzb_do, nzt_do
463	local_pf(i,j,k) = prr(k,j,i)
464	ENDDO
465	ENDDO
466	ENDDO
467	ELSE
468	DO i = nxl, nxr
469	DO j = nys, nyn
470	DO k = nzb_do, nzt_do
471	local_pf(i,j,k) = prr_av(k,j,i)
472	ENDDO
473	ENDDO
474	ENDDO
475	ENDIF
476	resorted = .TRUE.
477
478	CASE ( 'pt' )
479	IF ( av == 0 ) THEN
480	IF ( .NOT. cloud_physics ) THEN
481	to_be_resorted => pt
482	ELSE
483	DO i = nxl, nxr
484	DO j = nys, nyn
485	DO k = nzb_do, nzt_do
486	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
487	pt_d_t(k) * &
488	ql(k,j,i)
489	ENDDO
490	ENDDO
491	ENDDO
492	resorted = .TRUE.
493	ENDIF
494	ELSE
495	to_be_resorted => pt_av
496	ENDIF
497
498	CASE ( 'q' )
499	IF ( av == 0 ) THEN
500	to_be_resorted => q
501	ELSE
502	to_be_resorted => q_av
503	ENDIF
504
505	CASE ( 'qc' )
506	IF ( av == 0 ) THEN
507	to_be_resorted => qc
508	ELSE
509	to_be_resorted => qc_av
510	ENDIF
511
512	CASE ( 'ql' )
513	IF ( av == 0 ) THEN
514	to_be_resorted => ql
515	ELSE
516	to_be_resorted => ql_av
517	ENDIF
518
519	CASE ( 'ql_c' )
520	IF ( av == 0 ) THEN
521	to_be_resorted => ql_c
522	ELSE
523	to_be_resorted => ql_c_av
524	ENDIF
525
526	CASE ( 'ql_v' )
527	IF ( av == 0 ) THEN
528	to_be_resorted => ql_v
529	ELSE
530	to_be_resorted => ql_v_av
531	ENDIF
532
533	CASE ( 'ql_vp' )
534	IF ( av == 0 ) THEN
535	IF ( simulated_time >= particle_advection_start ) THEN
536	DO i = nxl, nxr
537	DO j = nys, nyn
538	DO k = nzb_do, nzt_do
539	number_of_particles = prt_count(k,j,i)
540	IF (number_of_particles <= 0) CYCLE
541	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
542	DO n = 1, number_of_particles
543	IF ( particles(n)%particle_mask ) THEN
544	tend(k,j,i) = tend(k,j,i) + &
545	particles(n)%weight_factor / &
546	prt_count(k,j,i)
547	ENDIF
548	ENDDO
549	ENDDO
550	ENDDO
551	ENDDO
552	ELSE
553	tend = 0.0_wp
554	ENDIF
555	DO i = nxl, nxr
556	DO j = nys, nyn
557	DO k = nzb_do, nzt_do
558	local_pf(i,j,k) = tend(k,j,i)
559	ENDDO
560	ENDDO
561	ENDDO
562	resorted = .TRUE.
563	ELSE
564	to_be_resorted => ql_vp_av
565	ENDIF
566
567	CASE ( 'qr' )
568	IF ( av == 0 ) THEN
569	to_be_resorted => qr
570	ELSE
571	to_be_resorted => qr_av
572	ENDIF
573
574	CASE ( 'qv' )
575	IF ( av == 0 ) THEN
576	DO i = nxl, nxr
577	DO j = nys, nyn
578	DO k = nzb_do, nzt_do
579	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
580	ENDDO
581	ENDDO
582	ENDDO
583	resorted = .TRUE.
584	ELSE
585	to_be_resorted => qv_av
586	ENDIF
587
588	CASE ( 'rho_ocean' )
589	IF ( av == 0 ) THEN
590	to_be_resorted => rho_ocean
591	ELSE
592	to_be_resorted => rho_ocean_av
593	ENDIF
594
595	CASE ( 's' )
596	IF ( av == 0 ) THEN
597	to_be_resorted => s
598	ELSE
599	to_be_resorted => s_av
600	ENDIF
601
602	CASE ( 'sa' )
603	IF ( av == 0 ) THEN
604	to_be_resorted => sa
605	ELSE
606	to_be_resorted => sa_av
607	ENDIF
608
609	CASE ( 'u' )
610	flag_nr = 1
611	IF ( av == 0 ) THEN
612	to_be_resorted => u
613	ELSE
614	to_be_resorted => u_av
615	ENDIF
616
617	CASE ( 'v' )
618	flag_nr = 2
619	IF ( av == 0 ) THEN
620	to_be_resorted => v
621	ELSE
622	to_be_resorted => v_av
623	ENDIF
624
625	CASE ( 'vpt' )
626	IF ( av == 0 ) THEN
627	to_be_resorted => vpt
628	ELSE
629	to_be_resorted => vpt_av
630	ENDIF
631
632	CASE ( 'w' )
633	flag_nr = 3
634	IF ( av == 0 ) THEN
635	to_be_resorted => w
636	ELSE
637	to_be_resorted => w_av
638	ENDIF
639	!
640	!-- Block of urban surface model outputs
641	CASE ( 'usm_output' )
642	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
643	nzb_do, nzt_do )
644
645	CASE DEFAULT
646
647	!
648	!-- Land surface quantity
649	IF ( land_surface ) THEN
650	!
651	!-- For soil model quantities, it is required to re-allocate local_pf
652	nzb_do = nzb_soil
653	nzt_do = nzt_soil
654
655	DEALLOCATE ( local_pf )
656	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
657	local_pf = fill_value
658
659	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
660	resorted = .TRUE.
661
662	!
663	!-- If no soil model variable was found, re-allocate local_pf
664	IF ( .NOT. found ) THEN
665	nzb_do = nzb
666	nzt_do = nz_do3d
667
668	DEALLOCATE ( local_pf )
669	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
670	ENDIF
671
672	ENDIF
673
674	IF ( .NOT. found ) THEN
675	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
676	resorted = .TRUE.
677	ENDIF
678
679	!
680	!-- Radiation quantity
681	IF ( .NOT. found .AND. radiation ) THEN
682	CALL radiation_data_output_3d( av, do3d(av,if), found, &
683	local_pf )
684	resorted = .TRUE.
685	ENDIF
686
687	!
688	!-- Gust module quantities
689	IF ( .NOT. found .AND. gust_module_enabled ) THEN
690	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
691	nzb_do, nzt_do )
692	resorted = .TRUE.
693	ENDIF
694
695	!
696	!-- Chemistry model output
697	IF ( .NOT. found .AND. air_chemistry ) THEN
698	CALL chem_data_output_3d( av, do3d(av,if), found, &
699	local_pf, fill_value )
700	resorted = .TRUE.
701	ENDIF
702
703	!
704	!-- Plant canopy model output
705	IF ( .NOT. found .AND. plant_canopy ) THEN
706	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
707	fill_value )
708	resorted = .TRUE.
709	ENDIF
710
711	!
712	!-- User defined quantity
713	IF ( .NOT. found ) THEN
714	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
715	nzb_do, nzt_do )
716	resorted = .TRUE.
717	ENDIF
718
719	IF ( .NOT. found ) THEN
720	message_string = 'no output available for: ' // &
721	TRIM( do3d(av,if) )
722	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
723	ENDIF
724
725	END SELECT
726
727	!
728	!-- Resort the array to be output, if not done above
729	IF ( .NOT. resorted ) THEN
730	DO i = nxl, nxr
731	DO j = nys, nyn
732	DO k = nzb_do, nzt_do
733	local_pf(i,j,k) = MERGE( &
734	to_be_resorted(k,j,i), &
735	REAL( fill_value, KIND = wp ), &
736	BTEST( wall_flags_0(k,j,i), flag_nr ) )
737	ENDDO
738	ENDDO
739	ENDDO
740	ENDIF
741
742	!
743	!-- Output of the 3D-array
744	#if defined( __parallel )
745	IF ( netcdf_data_format < 5 ) THEN
746	!
747	!-- Non-parallel netCDF output. Data is output in parallel in
748	!-- FORTRAN binary format here, and later collected into one file by
749	!-- combine_plot_fields
750	IF ( myid == 0 ) THEN
751	WRITE ( 30 ) time_since_reference_point, &
752	do3d_time_count(av), av
753	ENDIF
754	DO i = 0, io_blocks-1
755	IF ( i == io_group ) THEN
756	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
757	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
758	ENDIF
759
760	CALL MPI_BARRIER( comm2d, ierr )
761
762	ENDDO
763
764	ELSE
765	#if defined( __netcdf )
766	!
767	!-- Parallel output in netCDF4/HDF5 format.
768	! IF ( nxr == nx .AND. nyn /= ny ) THEN
769	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
770	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
771	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
772	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
773	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
774	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
775	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
776	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
777	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
778	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
779	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
780	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
781	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
782	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
783	! ELSE
784	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
785	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
786	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
787	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
788	! ENDIF
789	CALL netcdf_handle_error( 'data_output_3d', 386 )
790	#endif
791	ENDIF
792	#else
793	#if defined( __netcdf )
794	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
795	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
796	start = (/ 1, 1, 1, do3d_time_count(av) /), &
797	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
798	CALL netcdf_handle_error( 'data_output_3d', 446 )
799	#endif
800	#endif
801
802	if = if + 1
803
804	!
805	!-- Deallocate temporary array
806	DEALLOCATE ( local_pf )
807
808	ENDDO
809
810	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
811
812	!
813	!-- Formats.
814	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
815	'label = ',A,A)
816
817	END SUBROUTINE data_output_3d

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