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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2756

Last change on this file since 2756 was 2756, checked in by suehring, 6 years ago
Fill values for 3D data output of chemical species introduced
Property svn:keywords set to `Id`
File size: 27.1 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 2756 2018-01-16 18:11:14Z suehring $
27	! Fill values for 3D output of chemical species introduced.
28	!
29	! 2746 2018-01-15 12:06:04Z suehring
30	! Move flag plant canopy to modules
31	!
32	! 2718 2018-01-02 08:49:38Z maronga
33	! Corrected "Former revisions" section
34	!
35	! 2696 2017-12-14 17:12:51Z kanani
36	! Change in file header (GPL part)
37	! Implementation of turbulence_closure_mod (TG)
38	! Implementation of chemistry module (FK)
39	! Set fill values at topography grid points or e.g. non-natural-type surface
40	! in case of LSM output (MS)
41	!
42	! 2512 2017-10-04 08:26:59Z raasch
43	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
44	! no output of ghost layer data
45	!
46	! 2292 2017-06-20 09:51:42Z schwenkel
47	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
48	! includes two more prognostic equations for cloud drop concentration (nc)
49	! and cloud water content (qc).
50	!
51	! 2233 2017-05-30 18:08:54Z suehring
52	!
53	! 2232 2017-05-30 17:47:52Z suehring
54	! Adjustments to new topography concept
55	!
56	! 2209 2017-04-19 09:34:46Z kanani
57	! Added plant canopy model output
58	!
59	! 2031 2016-10-21 15:11:58Z knoop
60	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
61	!
62	! 2011 2016-09-19 17:29:57Z kanani
63	! Flag urban_surface is now defined in module control_parameters,
64	! changed prefix for urban surface model output to "usm_",
65	! introduced control parameter varnamelength for LEN of trimvar.
66	!
67	! 2007 2016-08-24 15:47:17Z kanani
68	! Added support for new urban surface model (temporary modifications of
69	! SELECT CASE ( ) necessary, see variable trimvar)
70	!
71	! 2000 2016-08-20 18:09:15Z knoop
72	! Forced header and separation lines into 80 columns
73	!
74	! 1980 2016-07-29 15:51:57Z suehring
75	! Bugfix, in order to steer user-defined output, setting flag found explicitly
76	! to .F.
77	!
78	! 1976 2016-07-27 13:28:04Z maronga
79	! Output of radiation quantities is now done directly in the respective module
80	!
81	! 1972 2016-07-26 07:52:02Z maronga
82	! Output of land surface quantities is now done directly in the respective module.
83	! Unnecessary directive __parallel removed.
84	!
85	! 1960 2016-07-12 16:34:24Z suehring
86	! Scalar surface flux added
87	!
88	! 1849 2016-04-08 11:33:18Z hoffmann
89	! prr moved to arrays_3d
90	!
91	! 1822 2016-04-07 07:49:42Z hoffmann
92	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
93	!
94	! 1808 2016-04-05 19:44:00Z raasch
95	! test output removed
96	!
97	! 1783 2016-03-06 18:36:17Z raasch
98	! name change of netcdf routines and module + related changes
99	!
100	! 1745 2016-02-05 13:06:51Z gronemeier
101	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
102	!
103	! 1691 2015-10-26 16:17:44Z maronga
104	! Added output of radiative heating rates for RRTMG
105	!
106	! 1682 2015-10-07 23:56:08Z knoop
107	! Code annotations made doxygen readable
108	!
109	! 1585 2015-04-30 07:05:52Z maronga
110	! Added support for RRTMG
111	!
112	! 1551 2015-03-03 14:18:16Z maronga
113	! Added suppport for land surface model and radiation model output. In the course
114	! of this action, the limits for vertical loops have been changed (from nzb and
115	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
116	! Moreover, a new vertical grid zs was introduced.
117	!
118	! 1359 2014-04-11 17:15:14Z hoffmann
119	! New particle structure integrated.
120	!
121	! 1353 2014-04-08 15:21:23Z heinze
122	! REAL constants provided with KIND-attribute
123	!
124	! 1327 2014-03-21 11:00:16Z raasch
125	! parts concerning avs output removed,
126	! -netcdf output queries
127	!
128	! 1320 2014-03-20 08:40:49Z raasch
129	! ONLY-attribute added to USE-statements,
130	! kind-parameters added to all INTEGER and REAL declaration statements,
131	! kinds are defined in new module kinds,
132	! old module precision_kind is removed,
133	! revision history before 2012 removed,
134	! comment fields (!:) to be used for variable explanations added to
135	! all variable declaration statements
136	!
137	! 1318 2014-03-17 13:35:16Z raasch
138	! barrier argument removed from cpu_log,
139	! module interfaces removed
140	!
141	! 1308 2014-03-13 14:58:42Z fricke
142	! Check, if the limit of the time dimension is exceeded for parallel output
143	! To increase the performance for parallel output, the following is done:
144	! - Update of time axis is only done by PE0
145	!
146	! 1244 2013-10-31 08:16:56Z raasch
147	! Bugfix for index bounds in case of 3d-parallel output
148	!
149	! 1115 2013-03-26 18:16:16Z hoffmann
150	! ql is calculated by calc_liquid_water_content
151	!
152	! 1106 2013-03-04 05:31:38Z raasch
153	! array_kind renamed precision_kind
154	!
155	! 1076 2012-12-05 08:30:18Z hoffmann
156	! Bugfix in output of ql
157	!
158	! 1053 2012-11-13 17:11:03Z hoffmann
159	! +nr, qr, prr, qc and averaged quantities
160	!
161	! 1036 2012-10-22 13:43:42Z raasch
162	! code put under GPL (PALM 3.9)
163	!
164	! 1031 2012-10-19 14:35:30Z raasch
165	! netCDF4 without parallel file support implemented
166	!
167	! 1007 2012-09-19 14:30:36Z franke
168	! Bugfix: missing calculation of ql_vp added
169	!
170	! Revision 1.1 1997/09/03 06:29:36 raasch
171	! Initial revision
172	!
173	!
174	! Description:
175	! ------------
176	!> Output of the 3D-arrays in netCDF and/or AVS format.
177	!------------------------------------------------------------------------------!
178	SUBROUTINE data_output_3d( av )
179
180
181	USE arrays_3d, &
182	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
183	sa, tend, u, v, vpt, w
184
185	USE averaging
186
187	#if defined( __chem )
188	USE chemistry_model_mod, &
189	ONLY: chem_data_output_3d
190	#endif
191
192	USE cloud_parameters, &
193	ONLY: l_d_cp, pt_d_t
194
195	USE control_parameters, &
196	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
197	io_blocks, io_group, land_surface, message_string, &
198	ntdim_3d, nz_do3d, plant_canopy, &
199	psolver, simulated_time, time_since_reference_point, &
200	urban_surface, varnamelength
201
202	USE cpulog, &
203	ONLY: log_point, cpu_log
204
205	USE indices, &
206	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
207
208	USE kinds
209
210	USE land_surface_model_mod, &
211	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
212
213	#if defined( __netcdf )
214	USE NETCDF
215	#endif
216
217	USE netcdf_interface, &
218	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
219	netcdf_data_format, netcdf_handle_error
220
221	USE particle_attributes, &
222	ONLY: grid_particles, number_of_particles, particles, &
223	particle_advection_start, prt_count
224
225	USE pegrid
226
227	USE plant_canopy_model_mod, &
228	ONLY: pcm_data_output_3d
229
230	USE radiation_model_mod, &
231	ONLY: nzub, nzut, radiation, radiation_data_output_3d
232
233	USE turbulence_closure_mod, &
234	ONLY: tcm_data_output_3d
235
236	USE urban_surface_mod, &
237	ONLY: usm_data_output_3d
238
239
240	IMPLICIT NONE
241
242	INTEGER(iwp) :: av !<
243	INTEGER(iwp) :: flag_nr !< number of masking flag
244	INTEGER(iwp) :: i !<
245	INTEGER(iwp) :: if !<
246	INTEGER(iwp) :: j !<
247	INTEGER(iwp) :: k !<
248	INTEGER(iwp) :: n !<
249	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
250	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
251
252	LOGICAL :: found !<
253	LOGICAL :: resorted !<
254
255	REAL(wp) :: mean_r !<
256	REAL(wp) :: s_r2 !<
257	REAL(wp) :: s_r3 !<
258
259	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
260
261	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
262
263	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
264
265	!
266	!-- Return, if nothing to output
267	IF ( do3d_no(av) == 0 ) RETURN
268
269	CALL cpu_log (log_point(14),'data_output_3d','start')
270
271	!
272	!-- Open output file.
273	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
274	!-- own file and writes the data of its subdomain in binary format. After the
275	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
276	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
277	IF ( netcdf_data_format < 5 ) THEN
278	CALL check_open( 30 )
279	IF ( myid == 0 ) CALL check_open( 106+av*10 )
280	ELSE
281	CALL check_open( 106+av*10 )
282	ENDIF
283
284	!
285	!-- For parallel netcdf output the time axis must be limited. Return, if this
286	!-- limit is exceeded. This could be the case, if the simulated time exceeds
287	!-- the given end time by the length of the given output interval.
288	IF ( netcdf_data_format > 4 ) THEN
289	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
290	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
291	simulated_time, '&because the maximum ', &
292	'number of output time levels is ', &
293	'exceeded.'
294	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
295	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
296	RETURN
297	ENDIF
298	ENDIF
299
300	!
301	!-- Update the netCDF time axis
302	!-- In case of parallel output, this is only done by PE0 to increase the
303	!-- performance.
304	#if defined( __netcdf )
305	do3d_time_count(av) = do3d_time_count(av) + 1
306	IF ( myid == 0 ) THEN
307	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
308	(/ time_since_reference_point /), &
309	start = (/ do3d_time_count(av) /), &
310	count = (/ 1 /) )
311	CALL netcdf_handle_error( 'data_output_3d', 376 )
312	ENDIF
313	#endif
314
315	!
316	!-- Loop over all variables to be written.
317	if = 1
318
319	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
320
321	!
322	!-- Temporary solution to account for data output within the new urban
323	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
324	!-- Store the array chosen on the temporary array.
325	trimvar = TRIM( do3d(av,if) )
326	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
327	trimvar = 'usm_output'
328	resorted = .TRUE.
329	nzb_do = nzub
330	nzt_do = nzut
331	ELSE
332	resorted = .FALSE.
333	nzb_do = nzb
334	nzt_do = nz_do3d
335	ENDIF
336	!
337	!-- Set flag to steer output of radiation, land-surface, or user-defined
338	!-- quantities
339	found = .FALSE.
340	!
341	!-- Allocate a temporary array with the desired output dimensions.
342	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
343	!
344	!-- Before each output, set array local_pf to fill value
345	local_pf = fill_value
346	!
347	!-- Set masking flag for topography for not resorted arrays
348	flag_nr = 0
349
350	SELECT CASE ( trimvar )
351
352	CASE ( 'e' )
353	IF ( av == 0 ) THEN
354	to_be_resorted => e
355	ELSE
356	to_be_resorted => e_av
357	ENDIF
358
359	CASE ( 'lpt' )
360	IF ( av == 0 ) THEN
361	to_be_resorted => pt
362	ELSE
363	to_be_resorted => lpt_av
364	ENDIF
365
366	CASE ( 'nc' )
367	IF ( av == 0 ) THEN
368	to_be_resorted => nc
369	ELSE
370	to_be_resorted => nc_av
371	ENDIF
372
373	CASE ( 'nr' )
374	IF ( av == 0 ) THEN
375	to_be_resorted => nr
376	ELSE
377	to_be_resorted => nr_av
378	ENDIF
379
380	CASE ( 'p' )
381	IF ( av == 0 ) THEN
382	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
383	to_be_resorted => p
384	ELSE
385	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
386	to_be_resorted => p_av
387	ENDIF
388
389	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
390	IF ( av == 0 ) THEN
391	IF ( simulated_time >= particle_advection_start ) THEN
392	tend = prt_count
393	ELSE
394	tend = 0.0_wp
395	ENDIF
396	DO i = nxl, nxr
397	DO j = nys, nyn
398	DO k = nzb_do, nzt_do
399	local_pf(i,j,k) = tend(k,j,i)
400	ENDDO
401	ENDDO
402	ENDDO
403	resorted = .TRUE.
404	ELSE
405	to_be_resorted => pc_av
406	ENDIF
407
408	CASE ( 'pr' ) ! mean particle radius (effective radius)
409	IF ( av == 0 ) THEN
410	IF ( simulated_time >= particle_advection_start ) THEN
411	DO i = nxl, nxr
412	DO j = nys, nyn
413	DO k = nzb_do, nzt_do
414	number_of_particles = prt_count(k,j,i)
415	IF (number_of_particles <= 0) CYCLE
416	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
417	s_r2 = 0.0_wp
418	s_r3 = 0.0_wp
419	DO n = 1, number_of_particles
420	IF ( particles(n)%particle_mask ) THEN
421	s_r2 = s_r2 + particles(n)%radius*2 &
422	particles(n)%weight_factor
423	s_r3 = s_r3 + particles(n)%radius*3 &
424	particles(n)%weight_factor
425	ENDIF
426	ENDDO
427	IF ( s_r2 > 0.0_wp ) THEN
428	mean_r = s_r3 / s_r2
429	ELSE
430	mean_r = 0.0_wp
431	ENDIF
432	tend(k,j,i) = mean_r
433	ENDDO
434	ENDDO
435	ENDDO
436	ELSE
437	tend = 0.0_wp
438	ENDIF
439	DO i = nxl, nxr
440	DO j = nys, nyn
441	DO k = nzb_do, nzt_do
442	local_pf(i,j,k) = tend(k,j,i)
443	ENDDO
444	ENDDO
445	ENDDO
446	resorted = .TRUE.
447	ELSE
448	to_be_resorted => pr_av
449	ENDIF
450
451	CASE ( 'prr' )
452	IF ( av == 0 ) THEN
453	DO i = nxl, nxr
454	DO j = nys, nyn
455	DO k = nzb_do, nzt_do
456	local_pf(i,j,k) = prr(k,j,i)
457	ENDDO
458	ENDDO
459	ENDDO
460	ELSE
461	DO i = nxl, nxr
462	DO j = nys, nyn
463	DO k = nzb_do, nzt_do
464	local_pf(i,j,k) = prr_av(k,j,i)
465	ENDDO
466	ENDDO
467	ENDDO
468	ENDIF
469	resorted = .TRUE.
470
471	CASE ( 'pt' )
472	IF ( av == 0 ) THEN
473	IF ( .NOT. cloud_physics ) THEN
474	to_be_resorted => pt
475	ELSE
476	DO i = nxl, nxr
477	DO j = nys, nyn
478	DO k = nzb_do, nzt_do
479	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
480	pt_d_t(k) * &
481	ql(k,j,i)
482	ENDDO
483	ENDDO
484	ENDDO
485	resorted = .TRUE.
486	ENDIF
487	ELSE
488	to_be_resorted => pt_av
489	ENDIF
490
491	CASE ( 'q' )
492	IF ( av == 0 ) THEN
493	to_be_resorted => q
494	ELSE
495	to_be_resorted => q_av
496	ENDIF
497
498	CASE ( 'qc' )
499	IF ( av == 0 ) THEN
500	to_be_resorted => qc
501	ELSE
502	to_be_resorted => qc_av
503	ENDIF
504
505	CASE ( 'ql' )
506	IF ( av == 0 ) THEN
507	to_be_resorted => ql
508	ELSE
509	to_be_resorted => ql_av
510	ENDIF
511
512	CASE ( 'ql_c' )
513	IF ( av == 0 ) THEN
514	to_be_resorted => ql_c
515	ELSE
516	to_be_resorted => ql_c_av
517	ENDIF
518
519	CASE ( 'ql_v' )
520	IF ( av == 0 ) THEN
521	to_be_resorted => ql_v
522	ELSE
523	to_be_resorted => ql_v_av
524	ENDIF
525
526	CASE ( 'ql_vp' )
527	IF ( av == 0 ) THEN
528	IF ( simulated_time >= particle_advection_start ) THEN
529	DO i = nxl, nxr
530	DO j = nys, nyn
531	DO k = nzb_do, nzt_do
532	number_of_particles = prt_count(k,j,i)
533	IF (number_of_particles <= 0) CYCLE
534	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
535	DO n = 1, number_of_particles
536	IF ( particles(n)%particle_mask ) THEN
537	tend(k,j,i) = tend(k,j,i) + &
538	particles(n)%weight_factor / &
539	prt_count(k,j,i)
540	ENDIF
541	ENDDO
542	ENDDO
543	ENDDO
544	ENDDO
545	ELSE
546	tend = 0.0_wp
547	ENDIF
548	DO i = nxl, nxr
549	DO j = nys, nyn
550	DO k = nzb_do, nzt_do
551	local_pf(i,j,k) = tend(k,j,i)
552	ENDDO
553	ENDDO
554	ENDDO
555	resorted = .TRUE.
556	ELSE
557	to_be_resorted => ql_vp_av
558	ENDIF
559
560	CASE ( 'qr' )
561	IF ( av == 0 ) THEN
562	to_be_resorted => qr
563	ELSE
564	to_be_resorted => qr_av
565	ENDIF
566
567	CASE ( 'qv' )
568	IF ( av == 0 ) THEN
569	DO i = nxl, nxr
570	DO j = nys, nyn
571	DO k = nzb_do, nzt_do
572	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
573	ENDDO
574	ENDDO
575	ENDDO
576	resorted = .TRUE.
577	ELSE
578	to_be_resorted => qv_av
579	ENDIF
580
581	CASE ( 'rho_ocean' )
582	IF ( av == 0 ) THEN
583	to_be_resorted => rho_ocean
584	ELSE
585	to_be_resorted => rho_ocean_av
586	ENDIF
587
588	CASE ( 's' )
589	IF ( av == 0 ) THEN
590	to_be_resorted => s
591	ELSE
592	to_be_resorted => s_av
593	ENDIF
594
595	CASE ( 'sa' )
596	IF ( av == 0 ) THEN
597	to_be_resorted => sa
598	ELSE
599	to_be_resorted => sa_av
600	ENDIF
601
602	CASE ( 'u' )
603	flag_nr = 1
604	IF ( av == 0 ) THEN
605	to_be_resorted => u
606	ELSE
607	to_be_resorted => u_av
608	ENDIF
609
610	CASE ( 'v' )
611	flag_nr = 2
612	IF ( av == 0 ) THEN
613	to_be_resorted => v
614	ELSE
615	to_be_resorted => v_av
616	ENDIF
617
618	CASE ( 'vpt' )
619	IF ( av == 0 ) THEN
620	to_be_resorted => vpt
621	ELSE
622	to_be_resorted => vpt_av
623	ENDIF
624
625	CASE ( 'w' )
626	flag_nr = 3
627	IF ( av == 0 ) THEN
628	to_be_resorted => w
629	ELSE
630	to_be_resorted => w_av
631	ENDIF
632	!
633	!-- Block of urban surface model outputs
634	CASE ( 'usm_output' )
635	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
636	nzb_do, nzt_do )
637
638	CASE DEFAULT
639
640	!
641	!-- Land surface quantity
642	IF ( land_surface ) THEN
643	!
644	!-- For soil model quantities, it is required to re-allocate local_pf
645	nzb_do = nzb_soil
646	nzt_do = nzt_soil
647
648	DEALLOCATE ( local_pf )
649	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
650	local_pf = fill_value
651
652	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
653	resorted = .TRUE.
654
655	!
656	!-- If no soil model variable was found, re-allocate local_pf
657	IF ( .NOT. found ) THEN
658	nzb_do = nzb
659	nzt_do = nz_do3d
660
661	DEALLOCATE ( local_pf )
662	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
663	ENDIF
664
665	ENDIF
666
667	IF ( .NOT. found ) THEN
668	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
669	resorted = .TRUE.
670	ENDIF
671
672	!
673	!-- Radiation quantity
674	IF ( .NOT. found .AND. radiation ) THEN
675	CALL radiation_data_output_3d( av, do3d(av,if), found, &
676	local_pf )
677	resorted = .TRUE.
678	ENDIF
679
680	!
681	!-- Chemistry model output
682	#if defined( __chem )
683	IF ( .NOT. found .AND. air_chemistry ) THEN
684	CALL chem_data_output_3d( av, do3d(av,if), found, &
685	local_pf, fill_value )
686	resorted = .TRUE.
687	ENDIF
688	#endif
689
690	!
691	!-- Plant canopy model output
692	IF ( .NOT. found .AND. plant_canopy ) THEN
693	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
694	fill_value )
695	resorted = .TRUE.
696	ENDIF
697
698	!
699	!-- User defined quantity
700	IF ( .NOT. found ) THEN
701	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
702	nzb_do, nzt_do )
703	resorted = .TRUE.
704	ENDIF
705
706	IF ( .NOT. found ) THEN
707	message_string = 'no output available for: ' // &
708	TRIM( do3d(av,if) )
709	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
710	ENDIF
711
712	END SELECT
713
714	!
715	!-- Resort the array to be output, if not done above
716	IF ( .NOT. resorted ) THEN
717	DO i = nxl, nxr
718	DO j = nys, nyn
719	DO k = nzb_do, nzt_do
720	local_pf(i,j,k) = MERGE( &
721	to_be_resorted(k,j,i), &
722	REAL( fill_value, KIND = wp ), &
723	BTEST( wall_flags_0(k,j,i), flag_nr ) )
724	ENDDO
725	ENDDO
726	ENDDO
727	ENDIF
728
729	!
730	!-- Output of the 3D-array
731	#if defined( __parallel )
732	IF ( netcdf_data_format < 5 ) THEN
733	!
734	!-- Non-parallel netCDF output. Data is output in parallel in
735	!-- FORTRAN binary format here, and later collected into one file by
736	!-- combine_plot_fields
737	IF ( myid == 0 ) THEN
738	WRITE ( 30 ) time_since_reference_point, &
739	do3d_time_count(av), av
740	ENDIF
741	DO i = 0, io_blocks-1
742	IF ( i == io_group ) THEN
743	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
744	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
745	ENDIF
746
747	CALL MPI_BARRIER( comm2d, ierr )
748
749	ENDDO
750
751	ELSE
752	#if defined( __netcdf )
753	!
754	!-- Parallel output in netCDF4/HDF5 format.
755	! IF ( nxr == nx .AND. nyn /= ny ) THEN
756	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
757	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
758	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
759	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
760	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
761	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
762	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
763	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
764	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
765	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
766	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
767	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
768	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
769	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
770	! ELSE
771	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
772	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
773	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
774	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
775	! ENDIF
776	CALL netcdf_handle_error( 'data_output_3d', 386 )
777	#endif
778	ENDIF
779	#else
780	#if defined( __netcdf )
781	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
782	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
783	start = (/ 1, 1, 1, do3d_time_count(av) /), &
784	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
785	CALL netcdf_handle_error( 'data_output_3d', 446 )
786	#endif
787	#endif
788
789	if = if + 1
790
791	!
792	!-- Deallocate temporary array
793	DEALLOCATE ( local_pf )
794
795	ENDDO
796
797	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
798
799	!
800	!-- Formats.
801	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
802	'label = ',A,A)
803
804	END SUBROUTINE data_output_3d

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