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source: palm/trunk/SOURCE/data_output_3d.f90 @ 1359

Last change on this file since 1359 was 1359, checked in by hoffmann, 10 years ago
new Lagrangian particle structure integrated
Property svn:keywords set to `Id`
File size: 20.2 KB

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1	SUBROUTINE data_output_3d( av )
2
3	!--------------------------------------------------------------------------------!
4	! This file is part of PALM.
5	!
6	! PALM is free software: you can redistribute it and/or modify it under the terms
7	! of the GNU General Public License as published by the Free Software Foundation,
8	! either version 3 of the License, or (at your option) any later version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2014 Leibniz Universitaet Hannover
18	!--------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	! New particle structure integrated.
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 1359 2014-04-11 17:15:14Z hoffmann $
27	!
28	! 1353 2014-04-08 15:21:23Z heinze
29	! REAL constants provided with KIND-attribute
30	!
31	! 1327 2014-03-21 11:00:16Z raasch
32	! parts concerning avs output removed,
33	! -netcdf output queries
34	!
35	! 1320 2014-03-20 08:40:49Z raasch
36	! ONLY-attribute added to USE-statements,
37	! kind-parameters added to all INTEGER and REAL declaration statements,
38	! kinds are defined in new module kinds,
39	! old module precision_kind is removed,
40	! revision history before 2012 removed,
41	! comment fields (!:) to be used for variable explanations added to
42	! all variable declaration statements
43	!
44	! 1318 2014-03-17 13:35:16Z raasch
45	! barrier argument removed from cpu_log,
46	! module interfaces removed
47	!
48	! 1308 2014-03-13 14:58:42Z fricke
49	! Check, if the limit of the time dimension is exceeded for parallel output
50	! To increase the performance for parallel output, the following is done:
51	! - Update of time axis is only done by PE0
52	!
53	! 1244 2013-10-31 08:16:56Z raasch
54	! Bugfix for index bounds in case of 3d-parallel output
55	!
56	! 1115 2013-03-26 18:16:16Z hoffmann
57	! ql is calculated by calc_liquid_water_content
58	!
59	! 1106 2013-03-04 05:31:38Z raasch
60	! array_kind renamed precision_kind
61	!
62	! 1076 2012-12-05 08:30:18Z hoffmann
63	! Bugfix in output of ql
64	!
65	! 1053 2012-11-13 17:11:03Z hoffmann
66	! +nr, qr, prr, qc and averaged quantities
67	!
68	! 1036 2012-10-22 13:43:42Z raasch
69	! code put under GPL (PALM 3.9)
70	!
71	! 1031 2012-10-19 14:35:30Z raasch
72	! netCDF4 without parallel file support implemented
73	!
74	! 1007 2012-09-19 14:30:36Z franke
75	! Bugfix: missing calculation of ql_vp added
76	!
77	! Revision 1.1 1997/09/03 06:29:36 raasch
78	! Initial revision
79	!
80	!
81	! Description:
82	! ------------
83	! Output of the 3D-arrays in netCDF and/or AVS format.
84	!------------------------------------------------------------------------------!
85
86	USE arrays_3d, &
87	ONLY: e, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho, sa, tend, u, v, &
88	vpt, w
89
90	USE averaging
91
92	USE cloud_parameters, &
93	ONLY: l_d_cp, prr, pt_d_t
94
95	USE control_parameters, &
96	ONLY: avs_data_file, cloud_physics, do3d, do3d_avs_n, &
97	do3d_no, do3d_time_count, io_blocks, io_group, &
98	message_string, netcdf_data_format, ntdim_3d, &
99	nz_do3d, plot_3d_precision, psolver, simulated_time, &
100	simulated_time_chr, skip_do_avs, time_since_reference_point
101
102	USE cpulog, &
103	ONLY: log_point, cpu_log
104
105	USE indices, &
106	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzt, &
107	nzb
108
109	USE kinds
110
111	USE netcdf_control
112
113	USE particle_attributes, &
114	ONLY: grid_particles, number_of_particles, particles, &
115	particle_advection_start, prt_count
116
117	USE pegrid
118
119	IMPLICIT NONE
120
121	CHARACTER (LEN=9) :: simulated_time_mod !:
122
123	INTEGER(iwp) :: av !:
124	INTEGER(iwp) :: i !:
125	INTEGER(iwp) :: if !:
126	INTEGER(iwp) :: j !:
127	INTEGER(iwp) :: k !:
128	INTEGER(iwp) :: n !:
129	INTEGER(iwp) :: pos !:
130	INTEGER(iwp) :: prec !:
131	INTEGER(iwp) :: psi !:
132
133	LOGICAL :: found !:
134	LOGICAL :: resorted !:
135
136	REAL(wp) :: mean_r !:
137	REAL(wp) :: s_r2 !:
138	REAL(wp) :: s_r3 !:
139
140	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !:
141
142	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !:
143
144	!
145	!-- Return, if nothing to output
146	IF ( do3d_no(av) == 0 ) RETURN
147	!
148	!-- For parallel netcdf output the time axis must be limited. Return, if this
149	!-- limit is exceeded. This could be the case, if the simulated time exceeds
150	!-- the given end time by the length of the given output interval.
151	IF ( netcdf_data_format > 4 ) THEN
152	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
153	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
154	simulated_time, '&because the maximum ', &
155	'number of output time levels is ', &
156	'exceeded.'
157	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
158	RETURN
159	ENDIF
160	ENDIF
161
162	CALL cpu_log (log_point(14),'data_output_3d','start')
163
164	!
165	!-- Open output file.
166	!-- Also creates coordinate and fld-file for AVS.
167	!-- For classic or 64bit netCDF output or output of other (old) data formats,
168	!-- for a run on more than one PE, each PE opens its own file and
169	!-- writes the data of its subdomain in binary format (regardless of the format
170	!-- the user has requested). After the run, these files are combined to one
171	!-- file by combine_plot_fields in the format requested by the user (netcdf
172	!-- and/or avs).
173	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
174	IF ( netcdf_data_format < 5 ) THEN
175	CALL check_open( 30 )
176	IF ( myid == 0 ) CALL check_open( 106+av*10 )
177	ELSE
178	CALL check_open( 106+av*10 )
179	ENDIF
180
181	!
182	!-- Allocate a temporary array with the desired output dimensions.
183	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb:nz_do3d) )
184
185	!
186	!-- Update the netCDF time axis
187	!-- In case of parallel output, this is only done by PE0 to increase the
188	!-- performance.
189	#if defined( __netcdf )
190	do3d_time_count(av) = do3d_time_count(av) + 1
191	IF ( myid == 0 ) THEN
192	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
193	(/ time_since_reference_point /), &
194	start = (/ do3d_time_count(av) /), &
195	count = (/ 1 /) )
196	CALL handle_netcdf_error( 'data_output_3d', 376 )
197	ENDIF
198	#endif
199
200	!
201	!-- Loop over all variables to be written.
202	if = 1
203
204	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
205	!
206	!-- Store the array chosen on the temporary array.
207	resorted = .FALSE.
208	SELECT CASE ( TRIM( do3d(av,if) ) )
209
210	CASE ( 'e' )
211	IF ( av == 0 ) THEN
212	to_be_resorted => e
213	ELSE
214	to_be_resorted => e_av
215	ENDIF
216
217	CASE ( 'lpt' )
218	IF ( av == 0 ) THEN
219	to_be_resorted => pt
220	ELSE
221	to_be_resorted => lpt_av
222	ENDIF
223
224	CASE ( 'nr' )
225	IF ( av == 0 ) THEN
226	to_be_resorted => nr
227	ELSE
228	to_be_resorted => nr_av
229	ENDIF
230
231	CASE ( 'p' )
232	IF ( av == 0 ) THEN
233	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
234	to_be_resorted => p
235	ELSE
236	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
237	to_be_resorted => p_av
238	ENDIF
239
240	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
241	IF ( av == 0 ) THEN
242	IF ( simulated_time >= particle_advection_start ) THEN
243	tend = prt_count
244	CALL exchange_horiz( tend, nbgp )
245	ELSE
246	tend = 0.0_wp
247	ENDIF
248	DO i = nxlg, nxrg
249	DO j = nysg, nyng
250	DO k = nzb, nz_do3d
251	local_pf(i,j,k) = tend(k,j,i)
252	ENDDO
253	ENDDO
254	ENDDO
255	resorted = .TRUE.
256	ELSE
257	CALL exchange_horiz( pc_av, nbgp )
258	to_be_resorted => pc_av
259	ENDIF
260
261	CASE ( 'pr' ) ! mean particle radius (effective radius)
262	IF ( av == 0 ) THEN
263	IF ( simulated_time >= particle_advection_start ) THEN
264	DO i = nxl, nxr
265	DO j = nys, nyn
266	DO k = nzb, nz_do3d
267	number_of_particles = prt_count(k,j,i)
268	IF (number_of_particles <= 0) CYCLE
269	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
270	s_r2 = 0.0_wp
271	s_r3 = 0.0_wp
272	DO n = 1, number_of_particles
273	IF ( particles(n)%particle_mask ) THEN
274	s_r2 = s_r2 + particles(n)%radius*2 &
275	particles(n)%weight_factor
276	s_r3 = s_r3 + particles(n)%radius*3 &
277	particles(n)%weight_factor
278	ENDIF
279	ENDDO
280	IF ( s_r2 > 0.0_wp ) THEN
281	mean_r = s_r3 / s_r2
282	ELSE
283	mean_r = 0.0_wp
284	ENDIF
285	tend(k,j,i) = mean_r
286	ENDDO
287	ENDDO
288	ENDDO
289	CALL exchange_horiz( tend, nbgp )
290	ELSE
291	tend = 0.0_wp
292	ENDIF
293	DO i = nxlg, nxrg
294	DO j = nysg, nyng
295	DO k = nzb, nz_do3d
296	local_pf(i,j,k) = tend(k,j,i)
297	ENDDO
298	ENDDO
299	ENDDO
300	resorted = .TRUE.
301	ELSE
302	CALL exchange_horiz( pr_av, nbgp )
303	to_be_resorted => pr_av
304	ENDIF
305
306	CASE ( 'prr' )
307	IF ( av == 0 ) THEN
308	CALL exchange_horiz( prr, nbgp )
309	DO i = nxlg, nxrg
310	DO j = nysg, nyng
311	DO k = nzb, nzt+1
312	local_pf(i,j,k) = prr(k,j,i)
313	ENDDO
314	ENDDO
315	ENDDO
316	ELSE
317	CALL exchange_horiz( prr_av, nbgp )
318	DO i = nxlg, nxrg
319	DO j = nysg, nyng
320	DO k = nzb, nzt+1
321	local_pf(i,j,k) = prr_av(k,j,i)
322	ENDDO
323	ENDDO
324	ENDDO
325	ENDIF
326	resorted = .TRUE.
327
328	CASE ( 'pt' )
329	IF ( av == 0 ) THEN
330	IF ( .NOT. cloud_physics ) THEN
331	to_be_resorted => pt
332	ELSE
333	DO i = nxlg, nxrg
334	DO j = nysg, nyng
335	DO k = nzb, nz_do3d
336	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
337	pt_d_t(k) * &
338	ql(k,j,i)
339	ENDDO
340	ENDDO
341	ENDDO
342	resorted = .TRUE.
343	ENDIF
344	ELSE
345	to_be_resorted => pt_av
346	ENDIF
347
348	CASE ( 'q' )
349	IF ( av == 0 ) THEN
350	to_be_resorted => q
351	ELSE
352	to_be_resorted => q_av
353	ENDIF
354
355	CASE ( 'qc' )
356	IF ( av == 0 ) THEN
357	to_be_resorted => qc
358	ELSE
359	to_be_resorted => qc_av
360	ENDIF
361
362	CASE ( 'ql' )
363	IF ( av == 0 ) THEN
364	to_be_resorted => ql
365	ELSE
366	to_be_resorted => ql_av
367	ENDIF
368
369	CASE ( 'ql_c' )
370	IF ( av == 0 ) THEN
371	to_be_resorted => ql_c
372	ELSE
373	to_be_resorted => ql_c_av
374	ENDIF
375
376	CASE ( 'ql_v' )
377	IF ( av == 0 ) THEN
378	to_be_resorted => ql_v
379	ELSE
380	to_be_resorted => ql_v_av
381	ENDIF
382
383	CASE ( 'ql_vp' )
384	IF ( av == 0 ) THEN
385	IF ( simulated_time >= particle_advection_start ) THEN
386	DO i = nxl, nxr
387	DO j = nys, nyn
388	DO k = nzb, nz_do3d
389	number_of_particles = prt_count(k,j,i)
390	IF (number_of_particles <= 0) CYCLE
391	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
392	DO n = 1, number_of_particles
393	IF ( particles(n)%particle_mask ) THEN
394	tend(k,j,i) = tend(k,j,i) + &
395	particles(n)%weight_factor / &
396	prt_count(k,j,i)
397	ENDIF
398	ENDDO
399	ENDDO
400	ENDDO
401	ENDDO
402	CALL exchange_horiz( tend, nbgp )
403	ELSE
404	tend = 0.0_wp
405	ENDIF
406	DO i = nxlg, nxrg
407	DO j = nysg, nyng
408	DO k = nzb, nz_do3d
409	local_pf(i,j,k) = tend(k,j,i)
410	ENDDO
411	ENDDO
412	ENDDO
413	resorted = .TRUE.
414	ELSE
415	CALL exchange_horiz( ql_vp_av, nbgp )
416	to_be_resorted => ql_vp_av
417	ENDIF
418
419	CASE ( 'qr' )
420	IF ( av == 0 ) THEN
421	to_be_resorted => qr
422	ELSE
423	to_be_resorted => qr_av
424	ENDIF
425
426	CASE ( 'qv' )
427	IF ( av == 0 ) THEN
428	DO i = nxlg, nxrg
429	DO j = nysg, nyng
430	DO k = nzb, nz_do3d
431	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
432	ENDDO
433	ENDDO
434	ENDDO
435	resorted = .TRUE.
436	ELSE
437	to_be_resorted => qv_av
438	ENDIF
439
440	CASE ( 'rho' )
441	IF ( av == 0 ) THEN
442	to_be_resorted => rho
443	ELSE
444	to_be_resorted => rho_av
445	ENDIF
446
447	CASE ( 's' )
448	IF ( av == 0 ) THEN
449	to_be_resorted => q
450	ELSE
451	to_be_resorted => s_av
452	ENDIF
453
454	CASE ( 'sa' )
455	IF ( av == 0 ) THEN
456	to_be_resorted => sa
457	ELSE
458	to_be_resorted => sa_av
459	ENDIF
460
461	CASE ( 'u' )
462	IF ( av == 0 ) THEN
463	to_be_resorted => u
464	ELSE
465	to_be_resorted => u_av
466	ENDIF
467
468	CASE ( 'v' )
469	IF ( av == 0 ) THEN
470	to_be_resorted => v
471	ELSE
472	to_be_resorted => v_av
473	ENDIF
474
475	CASE ( 'vpt' )
476	IF ( av == 0 ) THEN
477	to_be_resorted => vpt
478	ELSE
479	to_be_resorted => vpt_av
480	ENDIF
481
482	CASE ( 'w' )
483	IF ( av == 0 ) THEN
484	to_be_resorted => w
485	ELSE
486	to_be_resorted => w_av
487	ENDIF
488
489	CASE DEFAULT
490	!
491	!-- User defined quantity
492	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
493	nz_do3d )
494	resorted = .TRUE.
495
496	IF ( .NOT. found ) THEN
497	message_string = 'no output available for: ' // &
498	TRIM( do3d(av,if) )
499	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
500	ENDIF
501
502	END SELECT
503
504	!
505	!-- Resort the array to be output, if not done above
506	IF ( .NOT. resorted ) THEN
507	DO i = nxlg, nxrg
508	DO j = nysg, nyng
509	DO k = nzb, nz_do3d
510	local_pf(i,j,k) = to_be_resorted(k,j,i)
511	ENDDO
512	ENDDO
513	ENDDO
514	ENDIF
515
516	!
517	!-- Output of the 3D-array
518	#if defined( __parallel )
519	IF ( netcdf_data_format < 5 ) THEN
520	!
521	!-- Non-parallel netCDF output. Data is output in parallel in
522	!-- FORTRAN binary format here, and later collected into one file by
523	!-- combine_plot_fields
524	IF ( myid == 0 ) THEN
525	WRITE ( 30 ) time_since_reference_point, &
526	do3d_time_count(av), av
527	ENDIF
528	DO i = 0, io_blocks-1
529	IF ( i == io_group ) THEN
530	WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb, nz_do3d
531	WRITE ( 30 ) local_pf
532	ENDIF
533	#if defined( __parallel )
534	CALL MPI_BARRIER( comm2d, ierr )
535	#endif
536	ENDDO
537
538	ELSE
539	#if defined( __netcdf )
540	!
541	!-- Parallel output in netCDF4/HDF5 format.
542	!-- Do not output redundant ghost point data except for the
543	!-- boundaries of the total domain.
544	IF ( nxr == nx .AND. nyn /= ny ) THEN
545	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
546	local_pf(nxl:nxr+1,nys:nyn,nzb:nz_do3d), &
547	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
548	count = (/ nxr-nxl+2, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
549	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
550	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
551	local_pf(nxl:nxr,nys:nyn+1,nzb:nz_do3d), &
552	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
553	count = (/ nxr-nxl+1, nyn-nys+2, nz_do3d-nzb+1, 1 /) )
554	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
555	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
556	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
557	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
558	count = (/ nxr-nxl+2, nyn-nys+2, nz_do3d-nzb+1, 1 /) )
559	ELSE
560	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
561	local_pf(nxl:nxr,nys:nyn,nzb:nz_do3d), &
562	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
563	count = (/ nxr-nxl+1, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
564	ENDIF
565	CALL handle_netcdf_error( 'data_output_3d', 386 )
566	#endif
567	ENDIF
568	#else
569	#if defined( __netcdf )
570	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
571	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
572	start = (/ 1, 1, 1, do3d_time_count(av) /), &
573	count = (/ nx+2, ny+2, nz_do3d-nzb+1, 1 /) )
574	CALL handle_netcdf_error( 'data_output_3d', 446 )
575	#endif
576	#endif
577
578	if = if + 1
579
580	ENDDO
581
582	!
583	!-- Deallocate temporary array.
584	DEALLOCATE( local_pf )
585
586
587	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
588
589	!
590	!-- Formats.
591	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
592	'label = ',A,A)
593
594	END SUBROUTINE data_output_3d

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