1 | SUBROUTINE data_output_3d( av ) |
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2 | |
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3 | !--------------------------------------------------------------------------------! |
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4 | ! This file is part of PALM. |
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5 | ! |
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6 | ! PALM is free software: you can redistribute it and/or modify it under the terms |
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7 | ! of the GNU General Public License as published by the Free Software Foundation, |
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8 | ! either version 3 of the License, or (at your option) any later version. |
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9 | ! |
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10 | ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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11 | ! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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12 | ! A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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13 | ! |
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14 | ! You should have received a copy of the GNU General Public License along with |
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15 | ! PALM. If not, see <http://www.gnu.org/licenses/>. |
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16 | ! |
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17 | ! Copyright 1997-2012 Leibniz University Hannover |
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18 | !--------------------------------------------------------------------------------! |
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19 | ! |
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20 | ! Current revisions: |
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21 | ! ----------------- |
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22 | ! |
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23 | ! |
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24 | ! Former revisions: |
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25 | ! ----------------- |
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26 | ! $Id: data_output_3d.f90 1036 2012-10-22 13:43:42Z raasch $ |
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27 | ! |
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28 | ! 1031 2012-10-19 14:35:30Z raasch |
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29 | ! netCDF4 without parallel file support implemented |
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30 | ! |
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31 | ! 1007 2012-09-19 14:30:36Z franke |
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32 | ! Bugfix: missing calculation of ql_vp added |
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33 | ! |
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34 | ! 790 2011-11-29 03:11:20Z raasch |
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35 | ! bugfix: calculation of 'pr' must depend on the particle weighting factor, |
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36 | ! nzt+1 replaced by nz_do3d for 'pr' |
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37 | ! |
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38 | ! 771 2011-10-27 10:56:21Z heinze |
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39 | ! +lpt |
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40 | ! |
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41 | ! 759 2011-09-15 13:58:31Z raasch |
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42 | ! Splitting of parallel I/O |
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43 | ! |
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44 | ! 727 2011-04-20 20:05:25Z suehring |
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45 | ! Exchange ghost layers also for p_av. |
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46 | ! |
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47 | ! 725 2011-04-11 09:37:01Z suehring |
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48 | ! Exchange ghost layers for p regardless of used pressure solver (except SOR). |
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49 | ! |
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50 | ! 691 2011-03-04 08:45:30Z maronga |
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51 | ! Replaced simulated_time by time_since_reference_point |
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52 | ! |
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53 | ! 673 2011-01-18 16:19:48Z suehring |
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54 | ! When using Multigrid or SOR solver an additional CALL exchange_horiz is |
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55 | ! is needed for pressure output. |
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56 | ! |
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57 | ! 667 2010-12-23 12:06:00Z suehring/gryschka |
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58 | ! nxl-1, nxr+1, nys-1, nyn+1 replaced by nxlg, nxrg, nysg, nyng in loops and |
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59 | ! allocation of arrays. Calls of exchange_horiz are modified. |
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60 | ! Skip-value skip_do_avs changed to a dynamic adaption of ghost points. |
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61 | ! |
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62 | ! 646 2010-12-15 13:03:52Z raasch |
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63 | ! bugfix: missing define statements for netcdf added |
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64 | ! |
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65 | ! 493 2010-03-01 08:30:24Z raasch |
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66 | ! netCDF4 support (parallel output) |
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67 | ! |
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68 | ! 355 2009-07-17 01:03:01Z letzel |
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69 | ! simulated_time in netCDF output replaced by time_since_reference_point. |
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70 | ! Output of netCDF messages with aid of message handling routine. |
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71 | ! Output of messages replaced by message handling routine. |
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72 | ! Bugfix: to_be_resorted => s_av for time-averaged scalars |
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73 | ! |
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74 | ! 96 2007-06-04 08:07:41Z raasch |
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75 | ! Output of density and salinity |
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76 | ! |
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77 | ! 75 2007-03-22 09:54:05Z raasch |
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78 | ! 2nd+3rd argument removed from exchange horiz |
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79 | ! |
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80 | ! RCS Log replace by Id keyword, revision history cleaned up |
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81 | ! |
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82 | ! Revision 1.3 2006/06/02 15:18:59 raasch |
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83 | ! +argument "found", -argument grid in call of routine user_data_output_3d |
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84 | ! |
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85 | ! Revision 1.2 2006/02/23 10:23:07 raasch |
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86 | ! Former subroutine plot_3d renamed data_output_3d, pl.. renamed do.., |
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87 | ! .._anz renamed .._n, |
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88 | ! output extended to (almost) all quantities, output of user-defined quantities |
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89 | ! |
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90 | ! Revision 1.1 1997/09/03 06:29:36 raasch |
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91 | ! Initial revision |
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92 | ! |
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93 | ! |
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94 | ! Description: |
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95 | ! ------------ |
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96 | ! Output of the 3D-arrays in netCDF and/or AVS format. |
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97 | !------------------------------------------------------------------------------! |
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98 | |
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99 | USE array_kind |
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100 | USE arrays_3d |
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101 | USE averaging |
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102 | USE cloud_parameters |
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103 | USE control_parameters |
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104 | USE cpulog |
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105 | USE indices |
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106 | USE interfaces |
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107 | USE netcdf_control |
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108 | USE particle_attributes |
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109 | USE pegrid |
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110 | |
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111 | IMPLICIT NONE |
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112 | |
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113 | CHARACTER (LEN=9) :: simulated_time_mod |
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114 | |
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115 | INTEGER :: av, i, if, j, k, n, pos, prec, psi |
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116 | |
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117 | LOGICAL :: found, resorted |
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118 | |
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119 | REAL :: mean_r, s_r3, s_r4 |
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120 | |
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121 | REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: local_pf |
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122 | |
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123 | REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted |
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124 | |
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125 | ! |
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126 | !-- Return, if nothing to output |
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127 | IF ( do3d_no(av) == 0 ) RETURN |
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128 | |
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129 | CALL cpu_log (log_point(14),'data_output_3d','start') |
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130 | |
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131 | ! |
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132 | !-- Open output file. |
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133 | !-- Also creates coordinate and fld-file for AVS. |
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134 | !-- For classic or 64bit netCDF output or output of other (old) data formats, |
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135 | !-- for a run on more than one PE, each PE opens its own file and |
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136 | !-- writes the data of its subdomain in binary format (regardless of the format |
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137 | !-- the user has requested). After the run, these files are combined to one |
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138 | !-- file by combine_plot_fields in the format requested by the user (netcdf |
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139 | !-- and/or avs). |
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140 | !-- For netCDF4/HDF5 output, data is written in parallel into one file. |
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141 | IF ( netcdf_output ) THEN |
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142 | IF ( netcdf_data_format < 5 ) THEN |
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143 | CALL check_open( 30 ) |
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144 | IF ( myid == 0 ) CALL check_open( 106+av*10 ) |
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145 | ELSE |
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146 | CALL check_open( 106+av*10 ) |
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147 | ENDIF |
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148 | ELSE |
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149 | IF ( avs_output .OR. ( numprocs > 1 ) ) CALL check_open( 30 ) |
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150 | ENDIF |
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151 | |
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152 | ! |
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153 | !-- Allocate a temporary array with the desired output dimensions. |
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154 | ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb:nz_do3d) ) |
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155 | |
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156 | ! |
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157 | !-- Update the netCDF time axis |
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158 | #if defined( __netcdf ) |
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159 | IF ( myid == 0 .OR. netcdf_data_format > 4 ) THEN |
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160 | do3d_time_count(av) = do3d_time_count(av) + 1 |
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161 | IF ( netcdf_output ) THEN |
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162 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), & |
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163 | (/ time_since_reference_point /), & |
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164 | start = (/ do3d_time_count(av) /), & |
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165 | count = (/ 1 /) ) |
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166 | CALL handle_netcdf_error( 'data_output_3d', 376 ) |
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167 | ENDIF |
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168 | ENDIF |
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169 | #endif |
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170 | |
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171 | ! |
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172 | !-- Loop over all variables to be written. |
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173 | if = 1 |
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174 | |
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175 | DO WHILE ( do3d(av,if)(1:1) /= ' ' ) |
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176 | ! |
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177 | !-- Set the precision for data compression. |
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178 | IF ( do3d_compress ) THEN |
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179 | DO i = 1, 100 |
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180 | IF ( plot_3d_precision(i)%variable == do3d(av,if) ) THEN |
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181 | prec = plot_3d_precision(i)%precision |
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182 | EXIT |
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183 | ENDIF |
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184 | ENDDO |
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185 | ENDIF |
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186 | |
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187 | ! |
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188 | !-- Store the array chosen on the temporary array. |
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189 | resorted = .FALSE. |
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190 | SELECT CASE ( TRIM( do3d(av,if) ) ) |
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191 | |
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192 | CASE ( 'e' ) |
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193 | IF ( av == 0 ) THEN |
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194 | to_be_resorted => e |
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195 | ELSE |
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196 | to_be_resorted => e_av |
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197 | ENDIF |
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198 | |
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199 | CASE ( 'lpt' ) |
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200 | IF ( av == 0 ) THEN |
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201 | to_be_resorted => pt |
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202 | ELSE |
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203 | to_be_resorted => lpt_av |
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204 | ENDIF |
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205 | |
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206 | CASE ( 'p' ) |
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207 | IF ( av == 0 ) THEN |
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208 | IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp ) |
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209 | to_be_resorted => p |
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210 | ELSE |
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211 | IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp ) |
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212 | to_be_resorted => p_av |
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213 | ENDIF |
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214 | |
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215 | CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange) |
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216 | IF ( av == 0 ) THEN |
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217 | tend = prt_count |
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218 | CALL exchange_horiz( tend, nbgp ) |
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219 | DO i = nxlg, nxrg |
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220 | DO j = nysg, nyng |
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221 | DO k = nzb, nz_do3d |
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222 | local_pf(i,j,k) = tend(k,j,i) |
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223 | ENDDO |
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224 | ENDDO |
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225 | ENDDO |
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226 | resorted = .TRUE. |
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227 | ELSE |
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228 | CALL exchange_horiz( pc_av, nbgp ) |
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229 | to_be_resorted => pc_av |
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230 | ENDIF |
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231 | |
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232 | CASE ( 'pr' ) ! mean particle radius |
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233 | IF ( av == 0 ) THEN |
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234 | DO i = nxl, nxr |
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235 | DO j = nys, nyn |
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236 | DO k = nzb, nz_do3d |
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237 | psi = prt_start_index(k,j,i) |
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238 | s_r3 = 0.0 |
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239 | s_r4 = 0.0 |
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240 | DO n = psi, psi+prt_count(k,j,i)-1 |
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241 | s_r3 = s_r3 + particles(n)%radius**3 * & |
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242 | particles(n)%weight_factor |
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243 | s_r4 = s_r4 + particles(n)%radius**4 * & |
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244 | particles(n)%weight_factor |
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245 | ENDDO |
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246 | IF ( s_r3 /= 0.0 ) THEN |
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247 | mean_r = s_r4 / s_r3 |
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248 | ELSE |
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249 | mean_r = 0.0 |
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250 | ENDIF |
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251 | tend(k,j,i) = mean_r |
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252 | ENDDO |
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253 | ENDDO |
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254 | ENDDO |
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255 | CALL exchange_horiz( tend, nbgp ) |
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256 | DO i = nxlg, nxrg |
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257 | DO j = nysg, nyng |
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258 | DO k = nzb, nz_do3d |
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259 | local_pf(i,j,k) = tend(k,j,i) |
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260 | ENDDO |
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261 | ENDDO |
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262 | ENDDO |
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263 | resorted = .TRUE. |
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264 | ELSE |
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265 | CALL exchange_horiz( pr_av, nbgp ) |
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266 | to_be_resorted => pr_av |
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267 | ENDIF |
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268 | |
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269 | CASE ( 'pt' ) |
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270 | IF ( av == 0 ) THEN |
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271 | IF ( .NOT. cloud_physics ) THEN |
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272 | to_be_resorted => pt |
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273 | ELSE |
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274 | DO i = nxlg, nxrg |
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275 | DO j = nysg, nyng |
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276 | DO k = nzb, nz_do3d |
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277 | local_pf(i,j,k) = pt(k,j,i) + l_d_cp * & |
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278 | pt_d_t(k) * & |
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279 | ql(k,j,i) |
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280 | ENDDO |
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281 | ENDDO |
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282 | ENDDO |
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283 | resorted = .TRUE. |
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284 | ENDIF |
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285 | ELSE |
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286 | to_be_resorted => pt_av |
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287 | ENDIF |
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288 | |
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289 | CASE ( 'q' ) |
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290 | IF ( av == 0 ) THEN |
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291 | to_be_resorted => q |
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292 | ELSE |
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293 | to_be_resorted => q_av |
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294 | ENDIF |
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295 | |
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296 | CASE ( 'ql' ) |
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297 | IF ( av == 0 ) THEN |
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298 | to_be_resorted => ql |
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299 | ELSE |
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300 | to_be_resorted => ql_av |
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301 | ENDIF |
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302 | |
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303 | CASE ( 'ql_c' ) |
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304 | IF ( av == 0 ) THEN |
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305 | to_be_resorted => ql_c |
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306 | ELSE |
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307 | to_be_resorted => ql_c_av |
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308 | ENDIF |
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309 | |
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310 | CASE ( 'ql_v' ) |
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311 | IF ( av == 0 ) THEN |
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312 | to_be_resorted => ql_v |
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313 | ELSE |
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314 | to_be_resorted => ql_v_av |
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315 | ENDIF |
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316 | |
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317 | CASE ( 'ql_vp' ) |
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318 | IF ( av == 0 ) THEN |
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319 | DO i = nxl, nxr |
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320 | DO j = nys, nyn |
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321 | DO k = nzb, nz_do3d |
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322 | psi = prt_start_index(k,j,i) |
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323 | DO n = psi, psi+prt_count(k,j,i)-1 |
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324 | tend(k,j,i) = tend(k,j,i) + & |
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325 | particles(n)%weight_factor / & |
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326 | prt_count(k,j,i) |
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327 | ENDDO |
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328 | ENDDO |
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329 | ENDDO |
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330 | ENDDO |
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331 | CALL exchange_horiz( tend, nbgp ) |
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332 | DO i = nxlg, nxrg |
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333 | DO j = nysg, nyng |
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334 | DO k = nzb, nz_do3d |
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335 | local_pf(i,j,k) = tend(k,j,i) |
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336 | ENDDO |
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337 | ENDDO |
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338 | ENDDO |
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339 | resorted = .TRUE. |
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340 | ELSE |
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341 | CALL exchange_horiz( ql_vp_av, nbgp ) |
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342 | to_be_resorted => ql_vp_av |
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343 | ENDIF |
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344 | |
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345 | CASE ( 'qv' ) |
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346 | IF ( av == 0 ) THEN |
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347 | DO i = nxlg, nxrg |
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348 | DO j = nysg, nyng |
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349 | DO k = nzb, nz_do3d |
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350 | local_pf(i,j,k) = q(k,j,i) - ql(k,j,i) |
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351 | ENDDO |
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352 | ENDDO |
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353 | ENDDO |
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354 | resorted = .TRUE. |
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355 | ELSE |
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356 | to_be_resorted => qv_av |
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357 | ENDIF |
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358 | |
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359 | CASE ( 'rho' ) |
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360 | IF ( av == 0 ) THEN |
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361 | to_be_resorted => rho |
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362 | ELSE |
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363 | to_be_resorted => rho_av |
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364 | ENDIF |
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365 | |
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366 | CASE ( 's' ) |
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367 | IF ( av == 0 ) THEN |
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368 | to_be_resorted => q |
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369 | ELSE |
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370 | to_be_resorted => s_av |
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371 | ENDIF |
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372 | |
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373 | CASE ( 'sa' ) |
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374 | IF ( av == 0 ) THEN |
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375 | to_be_resorted => sa |
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376 | ELSE |
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377 | to_be_resorted => sa_av |
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378 | ENDIF |
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379 | |
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380 | CASE ( 'u' ) |
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381 | IF ( av == 0 ) THEN |
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382 | to_be_resorted => u |
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383 | ELSE |
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384 | to_be_resorted => u_av |
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385 | ENDIF |
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386 | |
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387 | CASE ( 'v' ) |
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388 | IF ( av == 0 ) THEN |
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389 | to_be_resorted => v |
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390 | ELSE |
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391 | to_be_resorted => v_av |
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392 | ENDIF |
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393 | |
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394 | CASE ( 'vpt' ) |
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395 | IF ( av == 0 ) THEN |
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396 | to_be_resorted => vpt |
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397 | ELSE |
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398 | to_be_resorted => vpt_av |
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399 | ENDIF |
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400 | |
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401 | CASE ( 'w' ) |
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402 | IF ( av == 0 ) THEN |
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403 | to_be_resorted => w |
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404 | ELSE |
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405 | to_be_resorted => w_av |
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406 | ENDIF |
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407 | |
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408 | CASE DEFAULT |
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409 | ! |
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410 | !-- User defined quantity |
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411 | CALL user_data_output_3d( av, do3d(av,if), found, local_pf, & |
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412 | nz_do3d ) |
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413 | resorted = .TRUE. |
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414 | |
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415 | IF ( .NOT. found ) THEN |
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416 | message_string = 'no output available for: ' // & |
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417 | TRIM( do3d(av,if) ) |
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418 | CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 ) |
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419 | ENDIF |
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420 | |
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421 | END SELECT |
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422 | |
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423 | ! |
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424 | !-- Resort the array to be output, if not done above |
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425 | IF ( .NOT. resorted ) THEN |
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426 | DO i = nxlg, nxrg |
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427 | DO j = nysg, nyng |
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428 | DO k = nzb, nz_do3d |
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429 | local_pf(i,j,k) = to_be_resorted(k,j,i) |
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430 | ENDDO |
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431 | ENDDO |
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432 | ENDDO |
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433 | ENDIF |
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434 | |
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435 | ! |
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436 | !-- Output of the volume data information for the AVS-FLD-file. |
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437 | do3d_avs_n = do3d_avs_n + 1 |
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438 | IF ( myid == 0 .AND. avs_output ) THEN |
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439 | ! |
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440 | !-- AVS-labels must not contain any colons. Hence they must be removed |
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441 | !-- from the time character string. |
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442 | simulated_time_mod = simulated_time_chr |
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443 | DO WHILE ( SCAN( simulated_time_mod, ':' ) /= 0 ) |
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444 | pos = SCAN( simulated_time_mod, ':' ) |
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445 | simulated_time_mod(pos:pos) = '/' |
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446 | ENDDO |
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447 | |
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448 | IF ( av == 0 ) THEN |
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449 | WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), & |
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450 | skip_do_avs, TRIM( do3d(av,if) ), & |
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451 | TRIM( simulated_time_mod ) |
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452 | ELSE |
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453 | WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), & |
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454 | skip_do_avs, TRIM( do3d(av,if) ) // & |
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455 | ' averaged', TRIM( simulated_time_mod ) |
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456 | ENDIF |
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457 | ! |
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458 | !-- Determine the Skip-value for the next array. Record end and start |
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459 | !-- require 4 byte each. |
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460 | skip_do_avs = skip_do_avs + ( ( ( nx+2*nbgp ) * ( ny+2*nbgp ) * & |
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461 | ( nz_do3d+1 ) ) * 4 + 8 ) |
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462 | ENDIF |
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463 | |
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464 | ! |
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465 | !-- Output of the 3D-array. (compressed/uncompressed) |
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466 | IF ( do3d_compress ) THEN |
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467 | ! |
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468 | !-- Compression, output of compression information on FLD-file and output |
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469 | !-- of compressed data. |
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470 | CALL write_compressed( local_pf, 30, 33, myid, nxl, nxr, nyn, nys, & |
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471 | nzb, nz_do3d, prec, nbgp ) |
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472 | ELSE |
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473 | ! |
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474 | !-- Uncompressed output. |
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475 | #if defined( __parallel ) |
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476 | IF ( netcdf_output ) THEN |
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477 | IF ( netcdf_data_format < 5 ) THEN |
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478 | ! |
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479 | !-- Non-parallel netCDF output. Data is output in parallel in |
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480 | !-- FORTRAN binary format here, and later collected into one file by |
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481 | !-- combine_plot_fields |
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482 | IF ( myid == 0 ) THEN |
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483 | WRITE ( 30 ) time_since_reference_point, & |
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484 | do3d_time_count(av), av |
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485 | ENDIF |
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486 | DO i = 0, io_blocks-1 |
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487 | IF ( i == io_group ) THEN |
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488 | WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb, nz_do3d |
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489 | WRITE ( 30 ) local_pf |
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490 | ENDIF |
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491 | #if defined( __parallel ) |
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492 | CALL MPI_BARRIER( comm2d, ierr ) |
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493 | #endif |
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494 | ENDDO |
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495 | |
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496 | ELSE |
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497 | #if defined( __netcdf ) |
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498 | ! |
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499 | !-- Parallel output in netCDF4/HDF5 format. |
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500 | !-- Do not output redundant ghost point data except for the |
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501 | !-- boundaries of the total domain. |
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502 | IF ( nxr == nx .AND. nyn /= ny ) THEN |
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503 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & |
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504 | local_pf(nxl:nxrg,nys:nyn,nzb:nz_do3d), & |
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505 | start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), & |
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506 | count = (/ nxr-nxl+1+nbgp, nyn-nys+1, nz_do3d-nzb+1, 1 /) ) |
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507 | ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN |
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508 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & |
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509 | local_pf(nxl:nxr,nys:nyng,nzb:nz_do3d), & |
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510 | start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), & |
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511 | count = (/ nxr-nxl+1, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) ) |
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512 | ELSEIF ( nxr == nx .AND. nyn == ny ) THEN |
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513 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & |
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514 | local_pf(nxl:nxrg,nys:nyng,nzb:nz_do3d), & |
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515 | start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), & |
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516 | count = (/ nxr-nxl+1+nbgp, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) ) |
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517 | ELSE |
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518 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & |
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519 | local_pf(nxl:nxr,nys:nyn,nzb:nz_do3d), & |
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520 | start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), & |
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521 | count = (/ nxr-nxl+1, nyn-nys+1, nz_do3d-nzb+1, 1 /) ) |
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522 | ENDIF |
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523 | CALL handle_netcdf_error( 'data_output_3d', 386 ) |
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524 | #endif |
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525 | ENDIF |
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526 | ENDIF |
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527 | #else |
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528 | IF ( avs_output ) THEN |
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529 | WRITE ( 30 ) local_pf(nxl:nxr+1,nys:nyn+1,:) |
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530 | ENDIF |
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531 | #if defined( __netcdf ) |
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532 | IF ( netcdf_output ) THEN |
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533 | |
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534 | nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & |
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535 | local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), & |
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536 | start = (/ 1, 1, 1, do3d_time_count(av) /), & |
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537 | count = (/ nx+2, ny+2, nz_do3d-nzb+1, 1 /) ) |
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538 | CALL handle_netcdf_error( 'data_output_3d', 446 ) |
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539 | |
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540 | ENDIF |
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541 | #endif |
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542 | #endif |
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543 | ENDIF |
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544 | |
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545 | if = if + 1 |
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546 | |
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547 | ENDDO |
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548 | |
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549 | ! |
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550 | !-- Deallocate temporary array. |
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551 | DEALLOCATE( local_pf ) |
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552 | |
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553 | |
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554 | CALL cpu_log (log_point(14),'data_output_3d','stop','nobarrier') |
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555 | |
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556 | ! |
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557 | !-- Formats. |
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558 | 3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ & |
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559 | 'label = ',A,A) |
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560 | |
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561 | END SUBROUTINE data_output_3d |
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