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source: palm/trunk/SOURCE/data_output_3d.f90 @ 4141

Last change on this file since 4141 was 4127, checked in by suehring, 5 years ago
Merge with branch resler: biomet- output of bio_mrt added; plant_canopy - separate vertical dimension for 3D output (to save disk space); radiation - remove unused plant canopy variables; urban-surface model - do not add anthropogenic heat during wall spin-up
Property svn:keywords set to `Id`
File size: 31.6 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 4127 2019-07-30 14:47:10Z gronemeier $
27	! Adjustment for top boundary index for plant-canopy model outputs
28	! (merge from branch resler)
29	!
30	! 4048 2019-06-21 21:00:21Z knoop
31	! Moved tcm_data_output_3d to module_interface
32	!
33	! 4039 2019-06-18 10:32:41Z suehring
34	! modularize diagnostic output
35	!
36	! 3994 2019-05-22 18:08:09Z suehring
37	! output of turbulence intensity added
38	!
39	! 3987 2019-05-22 09:52:13Z kanani
40	! Introduce alternative switch for debug output during timestepping
41	!
42	! 3885 2019-04-11 11:29:34Z kanani
43	! Changes related to global restructuring of location messages and introduction
44	! of additional debug messages
45	!
46	! 3814 2019-03-26 08:40:31Z pavelkrc
47	! unused variables removed
48	!
49	! 3655 2019-01-07 16:51:22Z knoop
50	! Bugfix: use time_since_reference_point instead of simulated_time (relevant
51	! when using wall/soil spinup)
52	!
53	! 3637 2018-12-20 01:51:36Z knoop
54	! Implementation of the PALM module interface
55	!
56	! 3589 2018-11-30 15:09:51Z suehring
57	! Move the control parameter "salsa" from salsa_mod to control_parameters
58	! (M. Kurppa)
59	!
60	! 3582 2018-11-29 19:16:36Z suehring
61	! add variable description; rename variable 'if' into 'ivar'
62	!
63	! 3525 2018-11-14 16:06:14Z kanani
64	! Changes related to clean-up of biometeorology (dom_dwd_user)
65	!
66	! 3467 2018-10-30 19:05:21Z suehring
67	! Implementation of a new aerosol module salsa.
68	!
69	! 3448 2018-10-29 18:14:31Z kanani
70	! Adjustment of biometeorology calls
71	!
72	! 3421 2018-10-24 18:39:32Z gronemeier
73	! Renamed output variables
74	!
75	! 3419 2018-10-24 17:27:31Z gronemeier
76	! bugfix: nx, ny are required in non-parallel case
77	!
78	! 3337 2018-10-12 15:17:09Z kanani
79	! (from branch resler)
80	! Add Biometeorology
81	!
82	! 3294 2018-10-01 02:37:10Z raasch
83	! changes concerning modularization of ocean option
84	!
85	! 3274 2018-09-24 15:42:55Z knoop
86	! Modularization of all bulk cloud physics code components
87	!
88	! 3241 2018-09-12 15:02:00Z raasch
89	! unused variables and format statements removed
90	!
91	! 3049 2018-05-29 13:52:36Z Giersch
92	! Error messages revised
93	!
94	! 3045 2018-05-28 07:55:41Z Giersch
95	! Error message revised
96	!
97	! 3014 2018-05-09 08:42:38Z maronga
98	! Added nzb_do and nzt_do for some modules for 3d output
99	!
100	! 3004 2018-04-27 12:33:25Z Giersch
101	! Allocation checks implemented (averaged data will be assigned to fill values
102	! if no allocation happened so far)
103	!
104	! 2967 2018-04-13 11:22:08Z raasch
105	! bugfix: missing parallel cpp-directives added
106	!
107	! 2817 2018-02-19 16:32:21Z knoop
108	! Preliminary gust module interface implemented
109	!
110	! 2766 2018-01-22 17:17:47Z kanani
111	! Removed preprocessor directive __chem
112	!
113	! 2756 2018-01-16 18:11:14Z suehring
114	! Fill values for 3D output of chemical species introduced.
115	!
116	! 2746 2018-01-15 12:06:04Z suehring
117	! Move flag plant canopy to modules
118	!
119	! 2718 2018-01-02 08:49:38Z maronga
120	! Corrected "Former revisions" section
121	!
122	! 2696 2017-12-14 17:12:51Z kanani
123	! Change in file header (GPL part)
124	! Implementation of turbulence_closure_mod (TG)
125	! Implementation of chemistry module (FK)
126	! Set fill values at topography grid points or e.g. non-natural-type surface
127	! in case of LSM output (MS)
128	!
129	! 2512 2017-10-04 08:26:59Z raasch
130	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
131	! no output of ghost layer data
132	!
133	! 2292 2017-06-20 09:51:42Z schwenkel
134	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
135	! includes two more prognostic equations for cloud drop concentration (nc)
136	! and cloud water content (qc).
137	!
138	! 2233 2017-05-30 18:08:54Z suehring
139	!
140	! 2232 2017-05-30 17:47:52Z suehring
141	! Adjustments to new topography concept
142	!
143	! 2209 2017-04-19 09:34:46Z kanani
144	! Added plant canopy model output
145	!
146	! 2031 2016-10-21 15:11:58Z knoop
147	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
148	!
149	! 2011 2016-09-19 17:29:57Z kanani
150	! Flag urban_surface is now defined in module control_parameters,
151	! changed prefix for urban surface model output to "usm_",
152	! introduced control parameter varnamelength for LEN of trimvar.
153	!
154	! 2007 2016-08-24 15:47:17Z kanani
155	! Added support for new urban surface model (temporary modifications of
156	! SELECT CASE ( ) necessary, see variable trimvar)
157	!
158	! 2000 2016-08-20 18:09:15Z knoop
159	! Forced header and separation lines into 80 columns
160	!
161	! 1980 2016-07-29 15:51:57Z suehring
162	! Bugfix, in order to steer user-defined output, setting flag found explicitly
163	! to .F.
164	!
165	! 1976 2016-07-27 13:28:04Z maronga
166	! Output of radiation quantities is now done directly in the respective module
167	!
168	! 1972 2016-07-26 07:52:02Z maronga
169	! Output of land surface quantities is now done directly in the respective module.
170	! Unnecessary directive __parallel removed.
171	!
172	! 1960 2016-07-12 16:34:24Z suehring
173	! Scalar surface flux added
174	!
175	! 1849 2016-04-08 11:33:18Z hoffmann
176	! prr moved to arrays_3d
177	!
178	! 1822 2016-04-07 07:49:42Z hoffmann
179	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
180	!
181	! 1808 2016-04-05 19:44:00Z raasch
182	! test output removed
183	!
184	! 1783 2016-03-06 18:36:17Z raasch
185	! name change of netcdf routines and module + related changes
186	!
187	! 1745 2016-02-05 13:06:51Z gronemeier
188	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
189	!
190	! 1691 2015-10-26 16:17:44Z maronga
191	! Added output of radiative heating rates for RRTMG
192	!
193	! 1682 2015-10-07 23:56:08Z knoop
194	! Code annotations made doxygen readable
195	!
196	! 1585 2015-04-30 07:05:52Z maronga
197	! Added support for RRTMG
198	!
199	! 1551 2015-03-03 14:18:16Z maronga
200	! Added suppport for land surface model and radiation model output. In the course
201	! of this action, the limits for vertical loops have been changed (from nzb and
202	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
203	! Moreover, a new vertical grid zs was introduced.
204	!
205	! 1359 2014-04-11 17:15:14Z hoffmann
206	! New particle structure integrated.
207	!
208	! 1353 2014-04-08 15:21:23Z heinze
209	! REAL constants provided with KIND-attribute
210	!
211	! 1327 2014-03-21 11:00:16Z raasch
212	! parts concerning avs output removed,
213	! -netcdf output queries
214	!
215	! 1320 2014-03-20 08:40:49Z raasch
216	! ONLY-attribute added to USE-statements,
217	! kind-parameters added to all INTEGER and REAL declaration statements,
218	! kinds are defined in new module kinds,
219	! old module precision_kind is removed,
220	! revision history before 2012 removed,
221	! comment fields (!:) to be used for variable explanations added to
222	! all variable declaration statements
223	!
224	! 1318 2014-03-17 13:35:16Z raasch
225	! barrier argument removed from cpu_log,
226	! module interfaces removed
227	!
228	! 1308 2014-03-13 14:58:42Z fricke
229	! Check, if the limit of the time dimension is exceeded for parallel output
230	! To increase the performance for parallel output, the following is done:
231	! - Update of time axis is only done by PE0
232	!
233	! 1244 2013-10-31 08:16:56Z raasch
234	! Bugfix for index bounds in case of 3d-parallel output
235	!
236	! 1115 2013-03-26 18:16:16Z hoffmann
237	! ql is calculated by calc_liquid_water_content
238	!
239	! 1106 2013-03-04 05:31:38Z raasch
240	! array_kind renamed precision_kind
241	!
242	! 1076 2012-12-05 08:30:18Z hoffmann
243	! Bugfix in output of ql
244	!
245	! 1053 2012-11-13 17:11:03Z hoffmann
246	! +nr, qr, prr, qc and averaged quantities
247	!
248	! 1036 2012-10-22 13:43:42Z raasch
249	! code put under GPL (PALM 3.9)
250	!
251	! 1031 2012-10-19 14:35:30Z raasch
252	! netCDF4 without parallel file support implemented
253	!
254	! 1007 2012-09-19 14:30:36Z franke
255	! Bugfix: missing calculation of ql_vp added
256	!
257	! Revision 1.1 1997/09/03 06:29:36 raasch
258	! Initial revision
259	!
260	!
261	! Description:
262	! ------------
263	!> Output of the 3D-arrays in netCDF and/or AVS format.
264	!------------------------------------------------------------------------------!
265	SUBROUTINE data_output_3d( av )
266
267
268	USE arrays_3d, &
269	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
270
271	USE averaging
272
273	USE basic_constants_and_equations_mod, &
274	ONLY: lv_d_cp
275
276	USE bulk_cloud_model_mod, &
277	ONLY: bulk_cloud_model
278
279	USE control_parameters, &
280	ONLY: debug_output_timestep, &
281	do3d, do3d_no, do3d_time_count, io_blocks, io_group, &
282	land_surface, message_string, ntdim_3d, nz_do3d, plant_canopy, &
283	psolver, time_since_reference_point, urban_surface, &
284	varnamelength
285
286	USE cpulog, &
287	ONLY: log_point, cpu_log
288
289	#if defined( __parallel )
290	USE indices, &
291	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
292	wall_flags_0
293	#else
294	USE indices, &
295	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
296	nzt, wall_flags_0
297	#endif
298
299	USE kinds
300
301	USE land_surface_model_mod, &
302	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
303
304	USE module_interface, &
305	ONLY: module_interface_data_output_3d
306
307	#if defined( __netcdf )
308	USE NETCDF
309	#endif
310
311	USE netcdf_interface, &
312	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
313	netcdf_data_format, netcdf_handle_error
314
315	USE particle_attributes, &
316	ONLY: grid_particles, number_of_particles, particles, &
317	particle_advection_start, prt_count
318
319	USE pegrid
320
321	USE plant_canopy_model_mod, &
322	ONLY: pch_index
323
324	USE radiation_model_mod, &
325	ONLY: nz_urban_b, nz_urban_t
326
327	USE urban_surface_mod, &
328	ONLY: usm_data_output_3d
329
330
331	IMPLICIT NONE
332
333	INTEGER(iwp) :: av !< flag for (non-)average output
334	INTEGER(iwp) :: flag_nr !< number of masking flag
335	INTEGER(iwp) :: i !< loop index
336	INTEGER(iwp) :: ivar !< variable index
337	INTEGER(iwp) :: j !< loop index
338	INTEGER(iwp) :: k !< loop index
339	INTEGER(iwp) :: n !< loop index
340	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
341	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
342
343	LOGICAL :: found !< true if output variable was found
344	LOGICAL :: resorted !< true if variable is resorted
345
346	REAL(wp) :: mean_r !< mean particle radius
347	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
348	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
349
350	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
351
352	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
353
354	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
355
356	!
357	!-- Return, if nothing to output
358	IF ( do3d_no(av) == 0 ) RETURN
359
360	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'start' )
361
362	CALL cpu_log (log_point(14),'data_output_3d','start')
363
364	!
365	!-- Open output file.
366	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
367	!-- own file and writes the data of its subdomain in binary format. After the
368	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
369	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
370	IF ( netcdf_data_format < 5 ) THEN
371	#if defined( __parallel )
372	CALL check_open( 30 )
373	#endif
374	IF ( myid == 0 ) CALL check_open( 106+av*10 )
375	ELSE
376	CALL check_open( 106+av*10 )
377	ENDIF
378
379	!
380	!-- For parallel netcdf output the time axis must be limited. Return, if this
381	!-- limit is exceeded. This could be the case, if the simulated time exceeds
382	!-- the given end time by the length of the given output interval.
383	IF ( netcdf_data_format > 4 ) THEN
384	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
385	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
386	time_since_reference_point, 's because the maximum ', &
387	'number of output time levels is ', &
388	'exceeded.'
389	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
390	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
391	RETURN
392	ENDIF
393	ENDIF
394
395	!
396	!-- Update the netCDF time axis
397	!-- In case of parallel output, this is only done by PE0 to increase the
398	!-- performance.
399	#if defined( __netcdf )
400	do3d_time_count(av) = do3d_time_count(av) + 1
401	IF ( myid == 0 ) THEN
402	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
403	(/ time_since_reference_point /), &
404	start = (/ do3d_time_count(av) /), &
405	count = (/ 1 /) )
406	CALL netcdf_handle_error( 'data_output_3d', 376 )
407	ENDIF
408	#endif
409
410	!
411	!-- Loop over all variables to be written.
412	ivar = 1
413
414	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
415
416	!
417	!-- Initiate found flag and resorting flag
418	found = .FALSE.
419	resorted = .FALSE.
420	trimvar = TRIM( do3d(av,ivar) )
421
422	!
423	!-- Temporary solution to account for data output within the new urban
424	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
425	!-- Store the array chosen on the temporary array.
426	nzb_do = nzb
427	!
428	!-- Set top index for 3D output. Note in case of plant-canopy model
429	!-- these index is determined by pch_index.
430	IF ( plant_canopy .AND. trimvar(1:4) == 'pcm_' ) THEN
431	nzt_do = pch_index
432	ELSE
433	nzt_do = nz_do3d
434	ENDIF
435
436	!
437	!-- Allocate a temporary array with the desired output dimensions.
438	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
439	!
440	!-- Before each output, set array local_pf to fill value
441	local_pf = fill_value
442	!
443	!-- Set masking flag for topography for not resorted arrays
444	flag_nr = 0
445
446	SELECT CASE ( trimvar )
447
448	CASE ( 'e' )
449	IF ( av == 0 ) THEN
450	to_be_resorted => e
451	ELSE
452	IF ( .NOT. ALLOCATED( e_av ) ) THEN
453	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
454	e_av = REAL( fill_value, KIND = wp )
455	ENDIF
456	to_be_resorted => e_av
457	ENDIF
458
459	CASE ( 'thetal' )
460	IF ( av == 0 ) THEN
461	to_be_resorted => pt
462	ELSE
463	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
464	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
465	lpt_av = REAL( fill_value, KIND = wp )
466	ENDIF
467	to_be_resorted => lpt_av
468	ENDIF
469
470	CASE ( 'p' )
471	IF ( av == 0 ) THEN
472	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
473	to_be_resorted => p
474	ELSE
475	IF ( .NOT. ALLOCATED( p_av ) ) THEN
476	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
477	p_av = REAL( fill_value, KIND = wp )
478	ENDIF
479	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
480	to_be_resorted => p_av
481	ENDIF
482
483	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
484	IF ( av == 0 ) THEN
485	IF ( time_since_reference_point >= particle_advection_start ) THEN
486	tend = prt_count
487	ELSE
488	tend = 0.0_wp
489	ENDIF
490	DO i = nxl, nxr
491	DO j = nys, nyn
492	DO k = nzb_do, nzt_do
493	local_pf(i,j,k) = tend(k,j,i)
494	ENDDO
495	ENDDO
496	ENDDO
497	resorted = .TRUE.
498	ELSE
499	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
500	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
501	pc_av = REAL( fill_value, KIND = wp )
502	ENDIF
503	to_be_resorted => pc_av
504	ENDIF
505
506	CASE ( 'pr' ) ! mean particle radius (effective radius)
507	IF ( av == 0 ) THEN
508	IF ( time_since_reference_point >= particle_advection_start ) THEN
509	DO i = nxl, nxr
510	DO j = nys, nyn
511	DO k = nzb_do, nzt_do
512	number_of_particles = prt_count(k,j,i)
513	IF (number_of_particles <= 0) CYCLE
514	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
515	s_r2 = 0.0_wp
516	s_r3 = 0.0_wp
517	DO n = 1, number_of_particles
518	IF ( particles(n)%particle_mask ) THEN
519	s_r2 = s_r2 + particles(n)%radius*2 &
520	particles(n)%weight_factor
521	s_r3 = s_r3 + particles(n)%radius*3 &
522	particles(n)%weight_factor
523	ENDIF
524	ENDDO
525	IF ( s_r2 > 0.0_wp ) THEN
526	mean_r = s_r3 / s_r2
527	ELSE
528	mean_r = 0.0_wp
529	ENDIF
530	tend(k,j,i) = mean_r
531	ENDDO
532	ENDDO
533	ENDDO
534	ELSE
535	tend = 0.0_wp
536	ENDIF
537	DO i = nxl, nxr
538	DO j = nys, nyn
539	DO k = nzb_do, nzt_do
540	local_pf(i,j,k) = tend(k,j,i)
541	ENDDO
542	ENDDO
543	ENDDO
544	resorted = .TRUE.
545	ELSE
546	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
547	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
548	pr_av = REAL( fill_value, KIND = wp )
549	ENDIF
550	to_be_resorted => pr_av
551	ENDIF
552
553	CASE ( 'theta' )
554	IF ( av == 0 ) THEN
555	IF ( .NOT. bulk_cloud_model ) THEN
556	to_be_resorted => pt
557	ELSE
558	DO i = nxl, nxr
559	DO j = nys, nyn
560	DO k = nzb_do, nzt_do
561	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
562	d_exner(k) * &
563	ql(k,j,i)
564	ENDDO
565	ENDDO
566	ENDDO
567	resorted = .TRUE.
568	ENDIF
569	ELSE
570	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
571	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
572	pt_av = REAL( fill_value, KIND = wp )
573	ENDIF
574	to_be_resorted => pt_av
575	ENDIF
576
577	CASE ( 'q' )
578	IF ( av == 0 ) THEN
579	to_be_resorted => q
580	ELSE
581	IF ( .NOT. ALLOCATED( q_av ) ) THEN
582	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
583	q_av = REAL( fill_value, KIND = wp )
584	ENDIF
585	to_be_resorted => q_av
586	ENDIF
587
588	CASE ( 'ql' )
589	IF ( av == 0 ) THEN
590	to_be_resorted => ql
591	ELSE
592	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
593	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
594	ql_av = REAL( fill_value, KIND = wp )
595	ENDIF
596	to_be_resorted => ql_av
597	ENDIF
598
599	CASE ( 'ql_c' )
600	IF ( av == 0 ) THEN
601	to_be_resorted => ql_c
602	ELSE
603	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
604	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
605	ql_c_av = REAL( fill_value, KIND = wp )
606	ENDIF
607	to_be_resorted => ql_c_av
608	ENDIF
609
610	CASE ( 'ql_v' )
611	IF ( av == 0 ) THEN
612	to_be_resorted => ql_v
613	ELSE
614	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
615	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
616	ql_v_av = REAL( fill_value, KIND = wp )
617	ENDIF
618	to_be_resorted => ql_v_av
619	ENDIF
620
621	CASE ( 'ql_vp' )
622	IF ( av == 0 ) THEN
623	IF ( time_since_reference_point >= particle_advection_start ) THEN
624	DO i = nxl, nxr
625	DO j = nys, nyn
626	DO k = nzb_do, nzt_do
627	number_of_particles = prt_count(k,j,i)
628	IF (number_of_particles <= 0) CYCLE
629	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
630	DO n = 1, number_of_particles
631	IF ( particles(n)%particle_mask ) THEN
632	tend(k,j,i) = tend(k,j,i) + &
633	particles(n)%weight_factor / &
634	prt_count(k,j,i)
635	ENDIF
636	ENDDO
637	ENDDO
638	ENDDO
639	ENDDO
640	ELSE
641	tend = 0.0_wp
642	ENDIF
643	DO i = nxl, nxr
644	DO j = nys, nyn
645	DO k = nzb_do, nzt_do
646	local_pf(i,j,k) = tend(k,j,i)
647	ENDDO
648	ENDDO
649	ENDDO
650	resorted = .TRUE.
651	ELSE
652	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
653	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
654	ql_vp_av = REAL( fill_value, KIND = wp )
655	ENDIF
656	to_be_resorted => ql_vp_av
657	ENDIF
658
659	CASE ( 'qv' )
660	IF ( av == 0 ) THEN
661	DO i = nxl, nxr
662	DO j = nys, nyn
663	DO k = nzb_do, nzt_do
664	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
665	ENDDO
666	ENDDO
667	ENDDO
668	resorted = .TRUE.
669	ELSE
670	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
671	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
672	qv_av = REAL( fill_value, KIND = wp )
673	ENDIF
674	to_be_resorted => qv_av
675	ENDIF
676
677	CASE ( 's' )
678	IF ( av == 0 ) THEN
679	to_be_resorted => s
680	ELSE
681	IF ( .NOT. ALLOCATED( s_av ) ) THEN
682	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
683	s_av = REAL( fill_value, KIND = wp )
684	ENDIF
685	to_be_resorted => s_av
686	ENDIF
687
688	CASE ( 'u' )
689	flag_nr = 1
690	IF ( av == 0 ) THEN
691	to_be_resorted => u
692	ELSE
693	IF ( .NOT. ALLOCATED( u_av ) ) THEN
694	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
695	u_av = REAL( fill_value, KIND = wp )
696	ENDIF
697	to_be_resorted => u_av
698	ENDIF
699
700	CASE ( 'v' )
701	flag_nr = 2
702	IF ( av == 0 ) THEN
703	to_be_resorted => v
704	ELSE
705	IF ( .NOT. ALLOCATED( v_av ) ) THEN
706	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
707	v_av = REAL( fill_value, KIND = wp )
708	ENDIF
709	to_be_resorted => v_av
710	ENDIF
711
712	CASE ( 'thetav' )
713	IF ( av == 0 ) THEN
714	to_be_resorted => vpt
715	ELSE
716	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
717	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
718	vpt_av = REAL( fill_value, KIND = wp )
719	ENDIF
720	to_be_resorted => vpt_av
721	ENDIF
722
723	CASE ( 'w' )
724	flag_nr = 3
725	IF ( av == 0 ) THEN
726	to_be_resorted => w
727	ELSE
728	IF ( .NOT. ALLOCATED( w_av ) ) THEN
729	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
730	w_av = REAL( fill_value, KIND = wp )
731	ENDIF
732	to_be_resorted => w_av
733	ENDIF
734
735	CASE DEFAULT
736	!
737	!-- Quantities of other modules
738	IF ( .NOT. found ) THEN
739	CALL module_interface_data_output_3d( &
740	av, trimvar, found, local_pf, &
741	fill_value, resorted, nzb_do, nzt_do &
742	)
743	ENDIF
744
745	!
746	!-- Temporary workaround: ToDo: refactor local_pf allocation
747	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
748	!
749	!-- For urban model quantities, it is required to re-allocate local_pf
750	nzb_do = nz_urban_b
751	nzt_do = nz_urban_t
752
753	DEALLOCATE ( local_pf )
754	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
755	local_pf = fill_value
756
757	CALL usm_data_output_3d( av, trimvar, found, local_pf, &
758	nzb_do, nzt_do )
759	resorted = .TRUE.
760
761	!
762	!-- If no soil model variable was found, re-allocate local_pf
763	IF ( .NOT. found ) THEN
764	nzb_do = nzb
765	nzt_do = nz_do3d
766
767	DEALLOCATE ( local_pf )
768	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
769	ENDIF
770
771	ENDIF
772
773	!
774	!-- Temporary workaround: ToDo: refactor local_pf allocation
775	IF ( .NOT. found .AND. land_surface ) THEN
776	!
777	!-- For soil model quantities, it is required to re-allocate local_pf
778	nzb_do = nzb_soil
779	nzt_do = nzt_soil
780
781	DEALLOCATE ( local_pf )
782	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
783	local_pf = fill_value
784
785	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
786	resorted = .TRUE.
787
788	!
789	!-- If no soil model variable was found, re-allocate local_pf
790	IF ( .NOT. found ) THEN
791	nzb_do = nzb
792	nzt_do = nz_do3d
793
794	DEALLOCATE ( local_pf )
795	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
796	ENDIF
797
798	ENDIF
799
800	IF ( .NOT. found ) THEN
801	message_string = 'no output available for: ' // &
802	TRIM( do3d(av,ivar) )
803	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
804	ENDIF
805
806	END SELECT
807
808	!
809	!-- Resort the array to be output, if not done above
810	IF ( .NOT. resorted ) THEN
811	DO i = nxl, nxr
812	DO j = nys, nyn
813	DO k = nzb_do, nzt_do
814	local_pf(i,j,k) = MERGE( &
815	to_be_resorted(k,j,i), &
816	REAL( fill_value, KIND = wp ), &
817	BTEST( wall_flags_0(k,j,i), flag_nr ) )
818	ENDDO
819	ENDDO
820	ENDDO
821	ENDIF
822
823	!
824	!-- Output of the 3D-array
825	#if defined( __parallel )
826	IF ( netcdf_data_format < 5 ) THEN
827	!
828	!-- Non-parallel netCDF output. Data is output in parallel in
829	!-- FORTRAN binary format here, and later collected into one file by
830	!-- combine_plot_fields
831	IF ( myid == 0 ) THEN
832	WRITE ( 30 ) time_since_reference_point, &
833	do3d_time_count(av), av
834	ENDIF
835	DO i = 0, io_blocks-1
836	IF ( i == io_group ) THEN
837	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
838	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
839	ENDIF
840
841	CALL MPI_BARRIER( comm2d, ierr )
842
843	ENDDO
844
845	ELSE
846	#if defined( __netcdf )
847	!
848	!-- Parallel output in netCDF4/HDF5 format.
849	! IF ( nxr == nx .AND. nyn /= ny ) THEN
850	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
851	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
852	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
853	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
854	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
855	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
856	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
857	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
858	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
859	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
860	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
861	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
862	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
863	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
864	! ELSE
865	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
866	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
867	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
868	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
869	! ENDIF
870	CALL netcdf_handle_error( 'data_output_3d', 386 )
871	#endif
872	ENDIF
873	#else
874	#if defined( __netcdf )
875	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
876	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
877	start = (/ 1, 1, 1, do3d_time_count(av) /), &
878	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
879	CALL netcdf_handle_error( 'data_output_3d', 446 )
880	#endif
881	#endif
882
883	ivar = ivar + 1
884
885	!
886	!-- Deallocate temporary array
887	DEALLOCATE ( local_pf )
888
889	ENDDO
890
891	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
892
893	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'end' )
894
895
896	END SUBROUTINE data_output_3d

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