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source: palm/trunk/SOURCE/data_output_3d.f90 @ 4039

Last change on this file since 4039 was 4039, checked in by suehring, 6 years ago
diagnostic output: Modularize diagnostic output, rename subroutines; formatting adjustments; allocate arrays only when required; add output of uu, vv, ww to enable variance calculation via temporal EC method; radiation: bugfix in masked data output; flow_statistics: Correct conversion to kinematic vertical scalar fluxes in case of pw-scheme and statistic regions
Property svn:keywords set to `Id`
File size: 31.4 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2019 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 4039 2019-06-18 10:32:41Z suehring $
27	! modularize diagnostic output
28	!
29	! 3994 2019-05-22 18:08:09Z suehring
30	! output of turbulence intensity added
31	!
32	! 3987 2019-05-22 09:52:13Z kanani
33	! Introduce alternative switch for debug output during timestepping
34	!
35	! 3885 2019-04-11 11:29:34Z kanani
36	! Changes related to global restructuring of location messages and introduction
37	! of additional debug messages
38	!
39	! 3814 2019-03-26 08:40:31Z pavelkrc
40	! unused variables removed
41	!
42	! 3655 2019-01-07 16:51:22Z knoop
43	! Bugfix: use time_since_reference_point instead of simulated_time (relevant
44	! when using wall/soil spinup)
45	!
46	! 3637 2018-12-20 01:51:36Z knoop
47	! Implementation of the PALM module interface
48	!
49	! 3589 2018-11-30 15:09:51Z suehring
50	! Move the control parameter "salsa" from salsa_mod to control_parameters
51	! (M. Kurppa)
52	!
53	! 3582 2018-11-29 19:16:36Z suehring
54	! add variable description; rename variable 'if' into 'ivar'
55	!
56	! 3525 2018-11-14 16:06:14Z kanani
57	! Changes related to clean-up of biometeorology (dom_dwd_user)
58	!
59	! 3467 2018-10-30 19:05:21Z suehring
60	! Implementation of a new aerosol module salsa.
61	!
62	! 3448 2018-10-29 18:14:31Z kanani
63	! Adjustment of biometeorology calls
64	!
65	! 3421 2018-10-24 18:39:32Z gronemeier
66	! Renamed output variables
67	!
68	! 3419 2018-10-24 17:27:31Z gronemeier
69	! bugfix: nx, ny are required in non-parallel case
70	!
71	! 3337 2018-10-12 15:17:09Z kanani
72	! (from branch resler)
73	! Add Biometeorology
74	!
75	! 3294 2018-10-01 02:37:10Z raasch
76	! changes concerning modularization of ocean option
77	!
78	! 3274 2018-09-24 15:42:55Z knoop
79	! Modularization of all bulk cloud physics code components
80	!
81	! 3241 2018-09-12 15:02:00Z raasch
82	! unused variables and format statements removed
83	!
84	! 3049 2018-05-29 13:52:36Z Giersch
85	! Error messages revised
86	!
87	! 3045 2018-05-28 07:55:41Z Giersch
88	! Error message revised
89	!
90	! 3014 2018-05-09 08:42:38Z maronga
91	! Added nzb_do and nzt_do for some modules for 3d output
92	!
93	! 3004 2018-04-27 12:33:25Z Giersch
94	! Allocation checks implemented (averaged data will be assigned to fill values
95	! if no allocation happened so far)
96	!
97	! 2967 2018-04-13 11:22:08Z raasch
98	! bugfix: missing parallel cpp-directives added
99	!
100	! 2817 2018-02-19 16:32:21Z knoop
101	! Preliminary gust module interface implemented
102	!
103	! 2766 2018-01-22 17:17:47Z kanani
104	! Removed preprocessor directive __chem
105	!
106	! 2756 2018-01-16 18:11:14Z suehring
107	! Fill values for 3D output of chemical species introduced.
108	!
109	! 2746 2018-01-15 12:06:04Z suehring
110	! Move flag plant canopy to modules
111	!
112	! 2718 2018-01-02 08:49:38Z maronga
113	! Corrected "Former revisions" section
114	!
115	! 2696 2017-12-14 17:12:51Z kanani
116	! Change in file header (GPL part)
117	! Implementation of turbulence_closure_mod (TG)
118	! Implementation of chemistry module (FK)
119	! Set fill values at topography grid points or e.g. non-natural-type surface
120	! in case of LSM output (MS)
121	!
122	! 2512 2017-10-04 08:26:59Z raasch
123	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
124	! no output of ghost layer data
125	!
126	! 2292 2017-06-20 09:51:42Z schwenkel
127	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
128	! includes two more prognostic equations for cloud drop concentration (nc)
129	! and cloud water content (qc).
130	!
131	! 2233 2017-05-30 18:08:54Z suehring
132	!
133	! 2232 2017-05-30 17:47:52Z suehring
134	! Adjustments to new topography concept
135	!
136	! 2209 2017-04-19 09:34:46Z kanani
137	! Added plant canopy model output
138	!
139	! 2031 2016-10-21 15:11:58Z knoop
140	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
141	!
142	! 2011 2016-09-19 17:29:57Z kanani
143	! Flag urban_surface is now defined in module control_parameters,
144	! changed prefix for urban surface model output to "usm_",
145	! introduced control parameter varnamelength for LEN of trimvar.
146	!
147	! 2007 2016-08-24 15:47:17Z kanani
148	! Added support for new urban surface model (temporary modifications of
149	! SELECT CASE ( ) necessary, see variable trimvar)
150	!
151	! 2000 2016-08-20 18:09:15Z knoop
152	! Forced header and separation lines into 80 columns
153	!
154	! 1980 2016-07-29 15:51:57Z suehring
155	! Bugfix, in order to steer user-defined output, setting flag found explicitly
156	! to .F.
157	!
158	! 1976 2016-07-27 13:28:04Z maronga
159	! Output of radiation quantities is now done directly in the respective module
160	!
161	! 1972 2016-07-26 07:52:02Z maronga
162	! Output of land surface quantities is now done directly in the respective module.
163	! Unnecessary directive __parallel removed.
164	!
165	! 1960 2016-07-12 16:34:24Z suehring
166	! Scalar surface flux added
167	!
168	! 1849 2016-04-08 11:33:18Z hoffmann
169	! prr moved to arrays_3d
170	!
171	! 1822 2016-04-07 07:49:42Z hoffmann
172	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
173	!
174	! 1808 2016-04-05 19:44:00Z raasch
175	! test output removed
176	!
177	! 1783 2016-03-06 18:36:17Z raasch
178	! name change of netcdf routines and module + related changes
179	!
180	! 1745 2016-02-05 13:06:51Z gronemeier
181	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
182	!
183	! 1691 2015-10-26 16:17:44Z maronga
184	! Added output of radiative heating rates for RRTMG
185	!
186	! 1682 2015-10-07 23:56:08Z knoop
187	! Code annotations made doxygen readable
188	!
189	! 1585 2015-04-30 07:05:52Z maronga
190	! Added support for RRTMG
191	!
192	! 1551 2015-03-03 14:18:16Z maronga
193	! Added suppport for land surface model and radiation model output. In the course
194	! of this action, the limits for vertical loops have been changed (from nzb and
195	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
196	! Moreover, a new vertical grid zs was introduced.
197	!
198	! 1359 2014-04-11 17:15:14Z hoffmann
199	! New particle structure integrated.
200	!
201	! 1353 2014-04-08 15:21:23Z heinze
202	! REAL constants provided with KIND-attribute
203	!
204	! 1327 2014-03-21 11:00:16Z raasch
205	! parts concerning avs output removed,
206	! -netcdf output queries
207	!
208	! 1320 2014-03-20 08:40:49Z raasch
209	! ONLY-attribute added to USE-statements,
210	! kind-parameters added to all INTEGER and REAL declaration statements,
211	! kinds are defined in new module kinds,
212	! old module precision_kind is removed,
213	! revision history before 2012 removed,
214	! comment fields (!:) to be used for variable explanations added to
215	! all variable declaration statements
216	!
217	! 1318 2014-03-17 13:35:16Z raasch
218	! barrier argument removed from cpu_log,
219	! module interfaces removed
220	!
221	! 1308 2014-03-13 14:58:42Z fricke
222	! Check, if the limit of the time dimension is exceeded for parallel output
223	! To increase the performance for parallel output, the following is done:
224	! - Update of time axis is only done by PE0
225	!
226	! 1244 2013-10-31 08:16:56Z raasch
227	! Bugfix for index bounds in case of 3d-parallel output
228	!
229	! 1115 2013-03-26 18:16:16Z hoffmann
230	! ql is calculated by calc_liquid_water_content
231	!
232	! 1106 2013-03-04 05:31:38Z raasch
233	! array_kind renamed precision_kind
234	!
235	! 1076 2012-12-05 08:30:18Z hoffmann
236	! Bugfix in output of ql
237	!
238	! 1053 2012-11-13 17:11:03Z hoffmann
239	! +nr, qr, prr, qc and averaged quantities
240	!
241	! 1036 2012-10-22 13:43:42Z raasch
242	! code put under GPL (PALM 3.9)
243	!
244	! 1031 2012-10-19 14:35:30Z raasch
245	! netCDF4 without parallel file support implemented
246	!
247	! 1007 2012-09-19 14:30:36Z franke
248	! Bugfix: missing calculation of ql_vp added
249	!
250	! Revision 1.1 1997/09/03 06:29:36 raasch
251	! Initial revision
252	!
253	!
254	! Description:
255	! ------------
256	!> Output of the 3D-arrays in netCDF and/or AVS format.
257	!------------------------------------------------------------------------------!
258	SUBROUTINE data_output_3d( av )
259
260
261	USE arrays_3d, &
262	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
263
264	USE averaging
265
266	USE basic_constants_and_equations_mod, &
267	ONLY: lv_d_cp
268
269	USE bulk_cloud_model_mod, &
270	ONLY: bulk_cloud_model
271
272	USE control_parameters, &
273	ONLY: debug_output_timestep, &
274	do3d, do3d_no, do3d_time_count, io_blocks, io_group, &
275	land_surface, message_string, ntdim_3d, nz_do3d, psolver, &
276	time_since_reference_point, urban_surface, varnamelength
277
278	USE cpulog, &
279	ONLY: log_point, cpu_log
280
281	#if defined( __parallel )
282	USE indices, &
283	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
284	wall_flags_0
285	#else
286	USE indices, &
287	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
288	nzt, wall_flags_0
289	#endif
290
291	USE kinds
292
293	USE land_surface_model_mod, &
294	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
295
296	USE module_interface, &
297	ONLY: module_interface_data_output_3d
298
299	#if defined( __netcdf )
300	USE NETCDF
301	#endif
302
303	USE netcdf_interface, &
304	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
305	netcdf_data_format, netcdf_handle_error
306
307	USE particle_attributes, &
308	ONLY: grid_particles, number_of_particles, particles, &
309	particle_advection_start, prt_count
310
311	USE pegrid
312
313	USE radiation_model_mod, &
314	ONLY: nz_urban_b, nz_urban_t
315
316	USE turbulence_closure_mod, &
317	ONLY: tcm_data_output_3d
318
319	USE urban_surface_mod, &
320	ONLY: usm_data_output_3d
321
322
323	IMPLICIT NONE
324
325	INTEGER(iwp) :: av !< flag for (non-)average output
326	INTEGER(iwp) :: flag_nr !< number of masking flag
327	INTEGER(iwp) :: i !< loop index
328	INTEGER(iwp) :: ivar !< variable index
329	INTEGER(iwp) :: j !< loop index
330	INTEGER(iwp) :: k !< loop index
331	INTEGER(iwp) :: n !< loop index
332	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
333	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
334
335	LOGICAL :: found !< true if output variable was found
336	LOGICAL :: resorted !< true if variable is resorted
337
338	REAL(wp) :: mean_r !< mean particle radius
339	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
340	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
341
342	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
343
344	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
345
346	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
347
348	!
349	!-- Return, if nothing to output
350	IF ( do3d_no(av) == 0 ) RETURN
351
352	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'start' )
353
354	CALL cpu_log (log_point(14),'data_output_3d','start')
355
356	!
357	!-- Open output file.
358	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
359	!-- own file and writes the data of its subdomain in binary format. After the
360	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
361	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
362	IF ( netcdf_data_format < 5 ) THEN
363	#if defined( __parallel )
364	CALL check_open( 30 )
365	#endif
366	IF ( myid == 0 ) CALL check_open( 106+av*10 )
367	ELSE
368	CALL check_open( 106+av*10 )
369	ENDIF
370
371	!
372	!-- For parallel netcdf output the time axis must be limited. Return, if this
373	!-- limit is exceeded. This could be the case, if the simulated time exceeds
374	!-- the given end time by the length of the given output interval.
375	IF ( netcdf_data_format > 4 ) THEN
376	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
377	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
378	time_since_reference_point, 's because the maximum ', &
379	'number of output time levels is ', &
380	'exceeded.'
381	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
382	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
383	RETURN
384	ENDIF
385	ENDIF
386
387	!
388	!-- Update the netCDF time axis
389	!-- In case of parallel output, this is only done by PE0 to increase the
390	!-- performance.
391	#if defined( __netcdf )
392	do3d_time_count(av) = do3d_time_count(av) + 1
393	IF ( myid == 0 ) THEN
394	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
395	(/ time_since_reference_point /), &
396	start = (/ do3d_time_count(av) /), &
397	count = (/ 1 /) )
398	CALL netcdf_handle_error( 'data_output_3d', 376 )
399	ENDIF
400	#endif
401
402	!
403	!-- Loop over all variables to be written.
404	ivar = 1
405
406	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
407
408	!
409	!-- Initiate found flag and resorting flag
410	found = .FALSE.
411	resorted = .FALSE.
412	!
413	!-- Temporary solution to account for data output within the new urban
414	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
415	!-- Store the array chosen on the temporary array.
416	nzb_do = nzb
417	nzt_do = nz_do3d
418
419	trimvar = TRIM( do3d(av,ivar) )
420	!
421	!-- Allocate a temporary array with the desired output dimensions.
422	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
423	!
424	!-- Before each output, set array local_pf to fill value
425	local_pf = fill_value
426	!
427	!-- Set masking flag for topography for not resorted arrays
428	flag_nr = 0
429
430	SELECT CASE ( trimvar )
431
432	CASE ( 'e' )
433	IF ( av == 0 ) THEN
434	to_be_resorted => e
435	ELSE
436	IF ( .NOT. ALLOCATED( e_av ) ) THEN
437	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
438	e_av = REAL( fill_value, KIND = wp )
439	ENDIF
440	to_be_resorted => e_av
441	ENDIF
442
443	CASE ( 'thetal' )
444	IF ( av == 0 ) THEN
445	to_be_resorted => pt
446	ELSE
447	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
448	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
449	lpt_av = REAL( fill_value, KIND = wp )
450	ENDIF
451	to_be_resorted => lpt_av
452	ENDIF
453
454	CASE ( 'p' )
455	IF ( av == 0 ) THEN
456	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
457	to_be_resorted => p
458	ELSE
459	IF ( .NOT. ALLOCATED( p_av ) ) THEN
460	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
461	p_av = REAL( fill_value, KIND = wp )
462	ENDIF
463	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
464	to_be_resorted => p_av
465	ENDIF
466
467	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
468	IF ( av == 0 ) THEN
469	IF ( time_since_reference_point >= particle_advection_start ) THEN
470	tend = prt_count
471	ELSE
472	tend = 0.0_wp
473	ENDIF
474	DO i = nxl, nxr
475	DO j = nys, nyn
476	DO k = nzb_do, nzt_do
477	local_pf(i,j,k) = tend(k,j,i)
478	ENDDO
479	ENDDO
480	ENDDO
481	resorted = .TRUE.
482	ELSE
483	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
484	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
485	pc_av = REAL( fill_value, KIND = wp )
486	ENDIF
487	to_be_resorted => pc_av
488	ENDIF
489
490	CASE ( 'pr' ) ! mean particle radius (effective radius)
491	IF ( av == 0 ) THEN
492	IF ( time_since_reference_point >= particle_advection_start ) THEN
493	DO i = nxl, nxr
494	DO j = nys, nyn
495	DO k = nzb_do, nzt_do
496	number_of_particles = prt_count(k,j,i)
497	IF (number_of_particles <= 0) CYCLE
498	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
499	s_r2 = 0.0_wp
500	s_r3 = 0.0_wp
501	DO n = 1, number_of_particles
502	IF ( particles(n)%particle_mask ) THEN
503	s_r2 = s_r2 + particles(n)%radius*2 &
504	particles(n)%weight_factor
505	s_r3 = s_r3 + particles(n)%radius*3 &
506	particles(n)%weight_factor
507	ENDIF
508	ENDDO
509	IF ( s_r2 > 0.0_wp ) THEN
510	mean_r = s_r3 / s_r2
511	ELSE
512	mean_r = 0.0_wp
513	ENDIF
514	tend(k,j,i) = mean_r
515	ENDDO
516	ENDDO
517	ENDDO
518	ELSE
519	tend = 0.0_wp
520	ENDIF
521	DO i = nxl, nxr
522	DO j = nys, nyn
523	DO k = nzb_do, nzt_do
524	local_pf(i,j,k) = tend(k,j,i)
525	ENDDO
526	ENDDO
527	ENDDO
528	resorted = .TRUE.
529	ELSE
530	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
531	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
532	pr_av = REAL( fill_value, KIND = wp )
533	ENDIF
534	to_be_resorted => pr_av
535	ENDIF
536
537	CASE ( 'theta' )
538	IF ( av == 0 ) THEN
539	IF ( .NOT. bulk_cloud_model ) THEN
540	to_be_resorted => pt
541	ELSE
542	DO i = nxl, nxr
543	DO j = nys, nyn
544	DO k = nzb_do, nzt_do
545	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
546	d_exner(k) * &
547	ql(k,j,i)
548	ENDDO
549	ENDDO
550	ENDDO
551	resorted = .TRUE.
552	ENDIF
553	ELSE
554	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
555	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
556	pt_av = REAL( fill_value, KIND = wp )
557	ENDIF
558	to_be_resorted => pt_av
559	ENDIF
560
561	CASE ( 'q' )
562	IF ( av == 0 ) THEN
563	to_be_resorted => q
564	ELSE
565	IF ( .NOT. ALLOCATED( q_av ) ) THEN
566	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
567	q_av = REAL( fill_value, KIND = wp )
568	ENDIF
569	to_be_resorted => q_av
570	ENDIF
571
572	CASE ( 'ql' )
573	IF ( av == 0 ) THEN
574	to_be_resorted => ql
575	ELSE
576	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
577	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
578	ql_av = REAL( fill_value, KIND = wp )
579	ENDIF
580	to_be_resorted => ql_av
581	ENDIF
582
583	CASE ( 'ql_c' )
584	IF ( av == 0 ) THEN
585	to_be_resorted => ql_c
586	ELSE
587	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
588	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
589	ql_c_av = REAL( fill_value, KIND = wp )
590	ENDIF
591	to_be_resorted => ql_c_av
592	ENDIF
593
594	CASE ( 'ql_v' )
595	IF ( av == 0 ) THEN
596	to_be_resorted => ql_v
597	ELSE
598	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
599	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
600	ql_v_av = REAL( fill_value, KIND = wp )
601	ENDIF
602	to_be_resorted => ql_v_av
603	ENDIF
604
605	CASE ( 'ql_vp' )
606	IF ( av == 0 ) THEN
607	IF ( time_since_reference_point >= particle_advection_start ) THEN
608	DO i = nxl, nxr
609	DO j = nys, nyn
610	DO k = nzb_do, nzt_do
611	number_of_particles = prt_count(k,j,i)
612	IF (number_of_particles <= 0) CYCLE
613	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
614	DO n = 1, number_of_particles
615	IF ( particles(n)%particle_mask ) THEN
616	tend(k,j,i) = tend(k,j,i) + &
617	particles(n)%weight_factor / &
618	prt_count(k,j,i)
619	ENDIF
620	ENDDO
621	ENDDO
622	ENDDO
623	ENDDO
624	ELSE
625	tend = 0.0_wp
626	ENDIF
627	DO i = nxl, nxr
628	DO j = nys, nyn
629	DO k = nzb_do, nzt_do
630	local_pf(i,j,k) = tend(k,j,i)
631	ENDDO
632	ENDDO
633	ENDDO
634	resorted = .TRUE.
635	ELSE
636	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
637	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
638	ql_vp_av = REAL( fill_value, KIND = wp )
639	ENDIF
640	to_be_resorted => ql_vp_av
641	ENDIF
642
643	CASE ( 'qv' )
644	IF ( av == 0 ) THEN
645	DO i = nxl, nxr
646	DO j = nys, nyn
647	DO k = nzb_do, nzt_do
648	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
649	ENDDO
650	ENDDO
651	ENDDO
652	resorted = .TRUE.
653	ELSE
654	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
655	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
656	qv_av = REAL( fill_value, KIND = wp )
657	ENDIF
658	to_be_resorted => qv_av
659	ENDIF
660
661	CASE ( 's' )
662	IF ( av == 0 ) THEN
663	to_be_resorted => s
664	ELSE
665	IF ( .NOT. ALLOCATED( s_av ) ) THEN
666	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
667	s_av = REAL( fill_value, KIND = wp )
668	ENDIF
669	to_be_resorted => s_av
670	ENDIF
671
672	CASE ( 'u' )
673	flag_nr = 1
674	IF ( av == 0 ) THEN
675	to_be_resorted => u
676	ELSE
677	IF ( .NOT. ALLOCATED( u_av ) ) THEN
678	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
679	u_av = REAL( fill_value, KIND = wp )
680	ENDIF
681	to_be_resorted => u_av
682	ENDIF
683
684	CASE ( 'v' )
685	flag_nr = 2
686	IF ( av == 0 ) THEN
687	to_be_resorted => v
688	ELSE
689	IF ( .NOT. ALLOCATED( v_av ) ) THEN
690	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
691	v_av = REAL( fill_value, KIND = wp )
692	ENDIF
693	to_be_resorted => v_av
694	ENDIF
695
696	CASE ( 'thetav' )
697	IF ( av == 0 ) THEN
698	to_be_resorted => vpt
699	ELSE
700	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
701	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
702	vpt_av = REAL( fill_value, KIND = wp )
703	ENDIF
704	to_be_resorted => vpt_av
705	ENDIF
706
707	CASE ( 'w' )
708	flag_nr = 3
709	IF ( av == 0 ) THEN
710	to_be_resorted => w
711	ELSE
712	IF ( .NOT. ALLOCATED( w_av ) ) THEN
713	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
714	w_av = REAL( fill_value, KIND = wp )
715	ENDIF
716	to_be_resorted => w_av
717	ENDIF
718
719	CASE DEFAULT
720
721	IF ( .NOT. found ) THEN
722	CALL tcm_data_output_3d( av, trimvar, found, local_pf, &
723	nzb_do, nzt_do )
724	resorted = .TRUE.
725	ENDIF
726
727	!
728	!-- Quantities of other modules
729	IF ( .NOT. found ) THEN
730	CALL module_interface_data_output_3d( &
731	av, trimvar, found, local_pf, &
732	fill_value, resorted, nzb_do, nzt_do &
733	)
734	ENDIF
735
736	!
737	!-- Temporary workaround: ToDo: refactor local_pf allocation
738	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
739	!
740	!-- For urban model quantities, it is required to re-allocate local_pf
741	nzb_do = nz_urban_b
742	nzt_do = nz_urban_t
743
744	DEALLOCATE ( local_pf )
745	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
746	local_pf = fill_value
747
748	CALL usm_data_output_3d( av, trimvar, found, local_pf, &
749	nzb_do, nzt_do )
750	resorted = .TRUE.
751
752	!
753	!-- If no soil model variable was found, re-allocate local_pf
754	IF ( .NOT. found ) THEN
755	nzb_do = nzb
756	nzt_do = nz_do3d
757
758	DEALLOCATE ( local_pf )
759	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
760	ENDIF
761
762	ENDIF
763
764	!
765	!-- Temporary workaround: ToDo: refactor local_pf allocation
766	IF ( .NOT. found .AND. land_surface ) THEN
767	!
768	!-- For soil model quantities, it is required to re-allocate local_pf
769	nzb_do = nzb_soil
770	nzt_do = nzt_soil
771
772	DEALLOCATE ( local_pf )
773	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
774	local_pf = fill_value
775
776	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
777	resorted = .TRUE.
778
779	!
780	!-- If no soil model variable was found, re-allocate local_pf
781	IF ( .NOT. found ) THEN
782	nzb_do = nzb
783	nzt_do = nz_do3d
784
785	DEALLOCATE ( local_pf )
786	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
787	ENDIF
788
789	ENDIF
790
791	IF ( .NOT. found ) THEN
792	message_string = 'no output available for: ' // &
793	TRIM( do3d(av,ivar) )
794	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
795	ENDIF
796
797	END SELECT
798
799	!
800	!-- Resort the array to be output, if not done above
801	IF ( .NOT. resorted ) THEN
802	DO i = nxl, nxr
803	DO j = nys, nyn
804	DO k = nzb_do, nzt_do
805	local_pf(i,j,k) = MERGE( &
806	to_be_resorted(k,j,i), &
807	REAL( fill_value, KIND = wp ), &
808	BTEST( wall_flags_0(k,j,i), flag_nr ) )
809	ENDDO
810	ENDDO
811	ENDDO
812	ENDIF
813
814	!
815	!-- Output of the 3D-array
816	#if defined( __parallel )
817	IF ( netcdf_data_format < 5 ) THEN
818	!
819	!-- Non-parallel netCDF output. Data is output in parallel in
820	!-- FORTRAN binary format here, and later collected into one file by
821	!-- combine_plot_fields
822	IF ( myid == 0 ) THEN
823	WRITE ( 30 ) time_since_reference_point, &
824	do3d_time_count(av), av
825	ENDIF
826	DO i = 0, io_blocks-1
827	IF ( i == io_group ) THEN
828	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
829	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
830	ENDIF
831
832	CALL MPI_BARRIER( comm2d, ierr )
833
834	ENDDO
835
836	ELSE
837	#if defined( __netcdf )
838	!
839	!-- Parallel output in netCDF4/HDF5 format.
840	! IF ( nxr == nx .AND. nyn /= ny ) THEN
841	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
842	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
843	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
844	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
845	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
846	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
847	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
848	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
849	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
850	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
851	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
852	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
853	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
854	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
855	! ELSE
856	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
857	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
858	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
859	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
860	! ENDIF
861	CALL netcdf_handle_error( 'data_output_3d', 386 )
862	#endif
863	ENDIF
864	#else
865	#if defined( __netcdf )
866	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
867	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
868	start = (/ 1, 1, 1, do3d_time_count(av) /), &
869	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
870	CALL netcdf_handle_error( 'data_output_3d', 446 )
871	#endif
872	#endif
873
874	ivar = ivar + 1
875
876	!
877	!-- Deallocate temporary array
878	DEALLOCATE ( local_pf )
879
880	ENDDO
881
882	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
883
884	IF ( debug_output_timestep ) CALL debug_message( 'data_output_3d', 'end' )
885
886
887	END SUBROUTINE data_output_3d

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