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source: palm/trunk/SOURCE/data_output_3d.f90 @ 668

Last change on this file since 668 was 668, checked in by suehring, 14 years ago
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Rev	Line
[1]	1	SUBROUTINE data_output_3d( av )
	2
	3	!------------------------------------------------------------------------------!
[254]	4	! Current revisions:
[1]	5	! -----------------
[392]	6	!
	7	! Former revisions:
	8	! -----------------
	9	! $Id: data_output_3d.f90 668 2010-12-23 13:22:58Z suehring $
	10	!
[668]	11	! 667 2010-12-23 12:06:00Z suehring/gryschka
	12	! nxl-1, nxr+1, nys-1, nyn+1 replaced by nxlg, nxrg, nysg, nyng in loops and
	13	! allocation of arrays. Calls of exchange_horiz are modified.
	14	! Skip-value skip_do_avs changed to a dynamic adaption of ghost points.
	15	!
[647]	16	! 646 2010-12-15 13:03:52Z raasch
	17	! bugfix: missing define statements for netcdf added
	18	!
[494]	19	! 493 2010-03-01 08:30:24Z raasch
	20	! NetCDF4 support (parallel output)
	21	!
[392]	22	! 355 2009-07-17 01:03:01Z letzel
[291]	23	! simulated_time in NetCDF output replaced by time_since_reference_point.
[263]	24	! Output of NetCDF messages with aid of message handling routine.
[254]	25	! Output of messages replaced by message handling routine.
[355]	26	! Bugfix: to_be_resorted => s_av for time-averaged scalars
[1]	27	!
[98]	28	! 96 2007-06-04 08:07:41Z raasch
	29	! Output of density and salinity
	30	!
[77]	31	! 75 2007-03-22 09:54:05Z raasch
	32	! 2nd+3rd argument removed from exchange horiz
	33	!
[3]	34	! RCS Log replace by Id keyword, revision history cleaned up
	35	!
[1]	36	! Revision 1.3 2006/06/02 15:18:59 raasch
	37	! +argument "found", -argument grid in call of routine user_data_output_3d
	38	!
	39	! Revision 1.2 2006/02/23 10:23:07 raasch
	40	! Former subroutine plot_3d renamed data_output_3d, pl.. renamed do..,
	41	! .._anz renamed .._n,
	42	! output extended to (almost) all quantities, output of user-defined quantities
	43	!
	44	! Revision 1.1 1997/09/03 06:29:36 raasch
	45	! Initial revision
	46	!
	47	!
	48	! Description:
	49	! ------------
	50	! Output of the 3D-arrays in NetCDF and/or AVS format.
	51	!------------------------------------------------------------------------------!
	52
	53	USE array_kind
	54	USE arrays_3d
	55	USE averaging
	56	USE cloud_parameters
	57	USE control_parameters
	58	USE cpulog
	59	USE indices
	60	USE interfaces
	61	USE netcdf_control
	62	USE particle_attributes
	63	USE pegrid
	64
	65	IMPLICIT NONE
	66
	67	CHARACTER (LEN=9) :: simulated_time_mod
	68
[559]	69	INTEGER :: av, i, if, j, k, n, pos, prec, psi
[1]	70
	71	LOGICAL :: found, resorted
	72
	73	REAL :: mean_r, s_r3, s_r4
	74
	75	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: local_pf
	76
	77	REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted
	78
	79	!
	80	!-- Return, if nothing to output
	81	IF ( do3d_no(av) == 0 ) RETURN
	82
	83	CALL cpu_log (log_point(14),'data_output_3d','start')
	84
	85	!
	86	!-- Open output file.
	87	!-- Also creates coordinate and fld-file for AVS.
[493]	88	!-- For classic or 64bit NetCDF output or output of other (old) data formats,
	89	!-- for a run on more than one PE, each PE opens its own file and
[1]	90	!-- writes the data of its subdomain in binary format (regardless of the format
	91	!-- the user has requested). After the run, these files are combined to one
	92	!-- file by combine_plot_fields in the format requested by the user (netcdf
[493]	93	!-- and/or avs).
	94	!-- For NetCDF4/HDF5 output, data is written in parallel into one file.
	95	IF ( netcdf_output ) THEN
	96	IF ( netcdf_data_format < 3 ) THEN
	97	CALL check_open( 30 )
	98	IF ( myid == 0 ) CALL check_open( 106+av*10 )
	99	ELSE
	100	CALL check_open( 106+av*10 )
	101	ENDIF
	102	ELSE
	103	IF ( avs_output .OR. ( numprocs > 1 ) ) CALL check_open( 30 )
	104	ENDIF
[1]	105
	106	!
	107	!-- Allocate a temporary array with the desired output dimensions.
[667]	108	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb:nz_do3d) )
[1]	109
	110	!
	111	!-- Update the NetCDF time axis
	112	#if defined( __netcdf )
[493]	113	IF ( myid == 0 .OR. netcdf_data_format > 2 ) THEN
	114	do3d_time_count(av) = do3d_time_count(av) + 1
	115	IF ( netcdf_output ) THEN
	116	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	117	(/ time_since_reference_point /), &
	118	start = (/ do3d_time_count(av) /), &
	119	count = (/ 1 /) )
	120	CALL handle_netcdf_error( 'data_output_3d', 376 )
	121	ENDIF
[1]	122	ENDIF
	123	#endif
	124
	125	!
	126	!-- Loop over all variables to be written.
	127	if = 1
	128
	129	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
	130	!
	131	!-- Set the precision for data compression.
	132	IF ( do3d_compress ) THEN
	133	DO i = 1, 100
	134	IF ( plot_3d_precision(i)%variable == do3d(av,if) ) THEN
	135	prec = plot_3d_precision(i)%precision
	136	EXIT
	137	ENDIF
	138	ENDDO
	139	ENDIF
	140
	141	!
	142	!-- Store the array chosen on the temporary array.
	143	resorted = .FALSE.
	144	SELECT CASE ( TRIM( do3d(av,if) ) )
	145
	146	CASE ( 'e' )
	147	IF ( av == 0 ) THEN
	148	to_be_resorted => e
	149	ELSE
	150	to_be_resorted => e_av
	151	ENDIF
	152
	153	CASE ( 'p' )
	154	IF ( av == 0 ) THEN
	155	to_be_resorted => p
	156	ELSE
	157	to_be_resorted => p_av
	158	ENDIF
	159
	160	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	161	IF ( av == 0 ) THEN
	162	tend = prt_count
[667]	163	CALL exchange_horiz( tend, nbgp )
	164	DO i = nxlg, nxrg
	165	DO j = nysg, nyng
[1]	166	DO k = nzb, nz_do3d
	167	local_pf(i,j,k) = tend(k,j,i)
	168	ENDDO
	169	ENDDO
	170	ENDDO
	171	resorted = .TRUE.
	172	ELSE
[667]	173	CALL exchange_horiz( pc_av, nbgp )
[1]	174	to_be_resorted => pc_av
	175	ENDIF
	176
	177	CASE ( 'pr' ) ! mean particle radius
	178	IF ( av == 0 ) THEN
	179	DO i = nxl, nxr
	180	DO j = nys, nyn
	181	DO k = nzb, nzt+1
	182	psi = prt_start_index(k,j,i)
	183	s_r3 = 0.0
	184	s_r4 = 0.0
	185	DO n = psi, psi+prt_count(k,j,i)-1
	186	s_r3 = s_r3 + particles(n)%radius**3
	187	s_r4 = s_r4 + particles(n)%radius**4
	188	ENDDO
	189	IF ( s_r3 /= 0.0 ) THEN
	190	mean_r = s_r4 / s_r3
	191	ELSE
	192	mean_r = 0.0
	193	ENDIF
	194	tend(k,j,i) = mean_r
	195	ENDDO
	196	ENDDO
	197	ENDDO
[667]	198	CALL exchange_horiz( tend, nbgp )
	199	DO i = nxlg, nxrg
	200	DO j = nysg, nyng
[1]	201	DO k = nzb, nzt+1
	202	local_pf(i,j,k) = tend(k,j,i)
	203	ENDDO
	204	ENDDO
	205	ENDDO
	206	resorted = .TRUE.
	207	ELSE
[667]	208	CALL exchange_horiz( pr_av, nbgp )
[1]	209	to_be_resorted => pr_av
	210	ENDIF
	211
	212	CASE ( 'pt' )
	213	IF ( av == 0 ) THEN
	214	IF ( .NOT. cloud_physics ) THEN
	215	to_be_resorted => pt
	216	ELSE
[667]	217	DO i = nxlg, nxrg
	218	DO j = nysg, nyng
[1]	219	DO k = nzb, nz_do3d
	220	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	221	pt_d_t(k) * &
	222	ql(k,j,i)
	223	ENDDO
	224	ENDDO
	225	ENDDO
	226	resorted = .TRUE.
	227	ENDIF
	228	ELSE
	229	to_be_resorted => pt_av
	230	ENDIF
	231
	232	CASE ( 'q' )
	233	IF ( av == 0 ) THEN
	234	to_be_resorted => q
	235	ELSE
	236	to_be_resorted => q_av
	237	ENDIF
	238
	239	CASE ( 'ql' )
	240	IF ( av == 0 ) THEN
	241	to_be_resorted => ql
	242	ELSE
	243	to_be_resorted => ql_av
	244	ENDIF
	245
	246	CASE ( 'ql_c' )
	247	IF ( av == 0 ) THEN
	248	to_be_resorted => ql_c
	249	ELSE
	250	to_be_resorted => ql_c_av
	251	ENDIF
	252
	253	CASE ( 'ql_v' )
	254	IF ( av == 0 ) THEN
	255	to_be_resorted => ql_v
	256	ELSE
	257	to_be_resorted => ql_v_av
	258	ENDIF
	259
	260	CASE ( 'ql_vp' )
	261	IF ( av == 0 ) THEN
	262	to_be_resorted => ql_vp
	263	ELSE
	264	to_be_resorted => ql_vp_av
	265	ENDIF
	266
	267	CASE ( 'qv' )
	268	IF ( av == 0 ) THEN
[667]	269	DO i = nxlg, nxrg
	270	DO j = nysg, nyng
[1]	271	DO k = nzb, nz_do3d
	272	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	273	ENDDO
	274	ENDDO
	275	ENDDO
	276	resorted = .TRUE.
	277	ELSE
	278	to_be_resorted => qv_av
	279	ENDIF
	280
[96]	281	CASE ( 'rho' )
	282	IF ( av == 0 ) THEN
	283	to_be_resorted => rho
	284	ELSE
	285	to_be_resorted => rho_av
	286	ENDIF
	287
[1]	288	CASE ( 's' )
	289	IF ( av == 0 ) THEN
	290	to_be_resorted => q
	291	ELSE
[355]	292	to_be_resorted => s_av
[1]	293	ENDIF
	294
[96]	295	CASE ( 'sa' )
	296	IF ( av == 0 ) THEN
	297	to_be_resorted => sa
	298	ELSE
	299	to_be_resorted => sa_av
	300	ENDIF
	301
[1]	302	CASE ( 'u' )
	303	IF ( av == 0 ) THEN
	304	to_be_resorted => u
	305	ELSE
	306	to_be_resorted => u_av
	307	ENDIF
	308
	309	CASE ( 'v' )
	310	IF ( av == 0 ) THEN
	311	to_be_resorted => v
	312	ELSE
	313	to_be_resorted => v_av
	314	ENDIF
	315
	316	CASE ( 'vpt' )
	317	IF ( av == 0 ) THEN
	318	to_be_resorted => vpt
	319	ELSE
	320	to_be_resorted => vpt_av
	321	ENDIF
	322
	323	CASE ( 'w' )
	324	IF ( av == 0 ) THEN
	325	to_be_resorted => w
	326	ELSE
	327	to_be_resorted => w_av
	328	ENDIF
	329
	330	CASE DEFAULT
	331	!
	332	!-- User defined quantity
	333	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	334	nz_do3d )
	335	resorted = .TRUE.
	336
[254]	337	IF ( .NOT. found ) THEN
[274]	338	message_string = 'no output available for: ' // &
	339	TRIM( do3d(av,if) )
[254]	340	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	341	ENDIF
	342
	343	END SELECT
	344
	345	!
	346	!-- Resort the array to be output, if not done above
	347	IF ( .NOT. resorted ) THEN
[667]	348	DO i = nxlg, nxrg
	349	DO j = nysg, nyng
[1]	350	DO k = nzb, nz_do3d
	351	local_pf(i,j,k) = to_be_resorted(k,j,i)
	352	ENDDO
	353	ENDDO
	354	ENDDO
	355	ENDIF
	356
	357	!
	358	!-- Output of the volume data information for the AVS-FLD-file.
	359	do3d_avs_n = do3d_avs_n + 1
	360	IF ( myid == 0 .AND. avs_output ) THEN
	361	!
	362	!-- AVS-labels must not contain any colons. Hence they must be removed
	363	!-- from the time character string.
	364	simulated_time_mod = simulated_time_chr
	365	DO WHILE ( SCAN( simulated_time_mod, ':' ) /= 0 )
	366	pos = SCAN( simulated_time_mod, ':' )
	367	simulated_time_mod(pos:pos) = '/'
	368	ENDDO
	369
	370	IF ( av == 0 ) THEN
	371	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	372	skip_do_avs, TRIM( do3d(av,if) ), &
	373	TRIM( simulated_time_mod )
	374	ELSE
	375	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	376	skip_do_avs, TRIM( do3d(av,if) ) // &
	377	' averaged', TRIM( simulated_time_mod )
	378	ENDIF
	379	!
	380	!-- Determine the Skip-value for the next array. Record end and start
	381	!-- require 4 byte each.
[667]	382	skip_do_avs = skip_do_avs + ( ((nx+2nbgp)(ny+2nbgp)(nz_do3d+1)) * 4 + 8 )
[1]	383	ENDIF
	384
	385	!
	386	!-- Output of the 3D-array. (compressed/uncompressed)
	387	IF ( do3d_compress ) THEN
	388	!
	389	!-- Compression, output of compression information on FLD-file and output
	390	!-- of compressed data.
[559]	391	CALL write_compressed( local_pf, 30, 33, myid, nxl, nxr, nyn, nys, &
[667]	392	nzb, nz_do3d, prec, nbgp )
[1]	393	ELSE
	394	!
	395	!-- Uncompressed output.
	396	#if defined( __parallel )
[493]	397	IF ( netcdf_output ) THEN
	398	IF ( netcdf_data_format < 3 ) THEN
	399	!
	400	!-- Classic or 64bit format. Data is output in parallel in FORTRAN
	401	!-- binary format here, and later collected into one file by
	402	!-- combine_plot_fields
	403	IF ( myid == 0 ) THEN
	404	WRITE ( 30 ) simulated_time, do3d_time_count(av), av
	405	ENDIF
[667]	406	WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb, nz_do3d
[559]	407	WRITE ( 30 ) local_pf
	408
[493]	409	ELSE
[646]	410	#if defined( __netcdf )
[493]	411	!
	412	!-- Output in NetCDF4/HDF5 format.
	413	!-- Do not output redundant ghost point data except for the
	414	!-- boundaries of the total domain.
	415	IF ( nxr == nx .AND. nyn /= ny ) THEN
	416	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	417	local_pf(nxl:nxrg,nys:nyn,nzb:nz_do3d), &
[493]	418	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	419	count = (/ nxr-nxl+1+nbgp, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
[493]	420	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	421	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	422	local_pf(nxl:nxr,nys:nyng,nzb:nz_do3d), &
[493]	423	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	424	count = (/ nxr-nxl+1, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) )
[493]	425	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	426	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	427	local_pf(nxl:nxrg,nys:nyng,nzb:nz_do3d), &
[493]	428	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	429	count = (/ nxr-nxl+1+nbgp, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) )
[493]	430	ELSE
	431	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	432	local_pf(nxl:nxr,nys:nyn,nzb:nz_do3d), &
	433	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	434	count = (/ nxr-nxl+1, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
	435	ENDIF
	436	CALL handle_netcdf_error( 'data_output_3d', 386 )
[646]	437	#endif
[493]	438	ENDIF
[1]	439	ENDIF
	440	#else
	441	IF ( avs_output ) THEN
	442	WRITE ( 30 ) local_pf(nxl:nxr+1,nys:nyn+1,:)
	443	ENDIF
	444	#if defined( __netcdf )
	445	IF ( netcdf_output ) THEN
[493]	446
	447	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	448	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
	449	start = (/ 1, 1, 1, do3d_time_count(av) /), &
	450	count = (/ nx+2, ny+2, nz_do3d-nzb+1, 1 /) )
	451	CALL handle_netcdf_error( 'data_output_3d', 446 )
	452
[1]	453	ENDIF
	454	#endif
	455	#endif
	456	ENDIF
	457
	458	if = if + 1
	459
	460	ENDDO
	461
	462	!
	463	!-- Deallocate temporary array.
	464	DEALLOCATE( local_pf )
	465
	466
	467	CALL cpu_log (log_point(14),'data_output_3d','stop','nobarrier')
	468
	469	!
	470	!-- Formats.
	471	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
	472	'label = ',A,A)
	473
	474	END SUBROUTINE data_output_3d

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