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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3948

Last change on this file since 3948 was 3885, checked in by kanani, 6 years ago
restructure/add location/debug messages
Property svn:keywords set to `Id`
File size: 31.2 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[3655]	17	! Copyright 1997-2019 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[3589]	22	!
	23	!
	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3885 2019-04-11 11:29:34Z hellstea $
[3885]	27	! Changes related to global restructuring of location messages and introduction
	28	! of additional debug messages
	29	!
	30	! 3814 2019-03-26 08:40:31Z pavelkrc
[3766]	31	! unused variables removed
	32	!
	33	! 3655 2019-01-07 16:51:22Z knoop
[3646]	34	! Bugfix: use time_since_reference_point instead of simulated_time (relevant
	35	! when using wall/soil spinup)
	36	!
	37	! 3637 2018-12-20 01:51:36Z knoop
[3637]	38	! Implementation of the PALM module interface
	39	!
	40	! 3589 2018-11-30 15:09:51Z suehring
[3582]	41	! Move the control parameter "salsa" from salsa_mod to control_parameters
	42	! (M. Kurppa)
	43	!
[3589]	44	! 3582 2018-11-29 19:16:36Z suehring
[3554]	45	! add variable description; rename variable 'if' into 'ivar'
	46	!
	47	! 3525 2018-11-14 16:06:14Z kanani
[3525]	48	! Changes related to clean-up of biometeorology (dom_dwd_user)
	49	!
	50	! 3467 2018-10-30 19:05:21Z suehring
[3467]	51	! Implementation of a new aerosol module salsa.
	52	!
	53	! 3448 2018-10-29 18:14:31Z kanani
[3448]	54	! Adjustment of biometeorology calls
	55	!
	56	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	57	! Renamed output variables
	58	!
	59	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	60	! bugfix: nx, ny are required in non-parallel case
	61	!
	62	! 3337 2018-10-12 15:17:09Z kanani
[3337]	63	! (from branch resler)
	64	! Add Biometeorology
	65	!
	66	! 3294 2018-10-01 02:37:10Z raasch
[3294]	67	! changes concerning modularization of ocean option
	68	!
	69	! 3274 2018-09-24 15:42:55Z knoop
[3274]	70	! Modularization of all bulk cloud physics code components
	71	!
	72	! 3241 2018-09-12 15:02:00Z raasch
[3241]	73	! unused variables and format statements removed
	74	!
	75	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	76	! Error messages revised
	77	!
	78	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	79	! Error message revised
	80	!
	81	! 3014 2018-05-09 08:42:38Z maronga
[3014]	82	! Added nzb_do and nzt_do for some modules for 3d output
	83	!
	84	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	85	! Allocation checks implemented (averaged data will be assigned to fill values
	86	! if no allocation happened so far)
	87	!
	88	! 2967 2018-04-13 11:22:08Z raasch
[2967]	89	! bugfix: missing parallel cpp-directives added
	90	!
	91	! 2817 2018-02-19 16:32:21Z knoop
[2817]	92	! Preliminary gust module interface implemented
	93	!
	94	! 2766 2018-01-22 17:17:47Z kanani
[2766]	95	! Removed preprocessor directive __chem
	96	!
	97	! 2756 2018-01-16 18:11:14Z suehring
[2756]	98	! Fill values for 3D output of chemical species introduced.
	99	!
	100	! 2746 2018-01-15 12:06:04Z suehring
[2746]	101	! Move flag plant canopy to modules
	102	!
	103	! 2718 2018-01-02 08:49:38Z maronga
[2716]	104	! Corrected "Former revisions" section
	105	!
	106	! 2696 2017-12-14 17:12:51Z kanani
	107	! Change in file header (GPL part)
[2696]	108	! Implementation of turbulence_closure_mod (TG)
	109	! Implementation of chemistry module (FK)
	110	! Set fill values at topography grid points or e.g. non-natural-type surface
	111	! in case of LSM output (MS)
	112	!
	113	! 2512 2017-10-04 08:26:59Z raasch
[2512]	114	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	115	! no output of ghost layer data
	116	!
	117	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	118	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	119	! includes two more prognostic equations for cloud drop concentration (nc)
	120	! and cloud water content (qc).
	121	!
	122	! 2233 2017-05-30 18:08:54Z suehring
[1552]	123	!
[2233]	124	! 2232 2017-05-30 17:47:52Z suehring
	125	! Adjustments to new topography concept
	126	!
[2210]	127	! 2209 2017-04-19 09:34:46Z kanani
	128	! Added plant canopy model output
	129	!
[2032]	130	! 2031 2016-10-21 15:11:58Z knoop
	131	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	132	!
[2012]	133	! 2011 2016-09-19 17:29:57Z kanani
	134	! Flag urban_surface is now defined in module control_parameters,
	135	! changed prefix for urban surface model output to "usm_",
	136	! introduced control parameter varnamelength for LEN of trimvar.
	137	!
[2008]	138	! 2007 2016-08-24 15:47:17Z kanani
	139	! Added support for new urban surface model (temporary modifications of
	140	! SELECT CASE ( ) necessary, see variable trimvar)
	141	!
[2001]	142	! 2000 2016-08-20 18:09:15Z knoop
	143	! Forced header and separation lines into 80 columns
	144	!
[1981]	145	! 1980 2016-07-29 15:51:57Z suehring
	146	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	147	! to .F.
	148	!
[1977]	149	! 1976 2016-07-27 13:28:04Z maronga
	150	! Output of radiation quantities is now done directly in the respective module
	151	!
[1973]	152	! 1972 2016-07-26 07:52:02Z maronga
	153	! Output of land surface quantities is now done directly in the respective module.
	154	! Unnecessary directive __parallel removed.
	155	!
[1961]	156	! 1960 2016-07-12 16:34:24Z suehring
	157	! Scalar surface flux added
	158	!
[1851]	159	! 1849 2016-04-08 11:33:18Z hoffmann
	160	! prr moved to arrays_3d
	161	!
[1823]	162	! 1822 2016-04-07 07:49:42Z hoffmann
	163	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	164	!
[1809]	165	! 1808 2016-04-05 19:44:00Z raasch
	166	! test output removed
	167	!
[1784]	168	! 1783 2016-03-06 18:36:17Z raasch
	169	! name change of netcdf routines and module + related changes
	170	!
[1746]	171	! 1745 2016-02-05 13:06:51Z gronemeier
	172	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	173	!
[1692]	174	! 1691 2015-10-26 16:17:44Z maronga
	175	! Added output of radiative heating rates for RRTMG
	176	!
[1683]	177	! 1682 2015-10-07 23:56:08Z knoop
	178	! Code annotations made doxygen readable
	179	!
[1586]	180	! 1585 2015-04-30 07:05:52Z maronga
	181	! Added support for RRTMG
	182	!
[1552]	183	! 1551 2015-03-03 14:18:16Z maronga
[1551]	184	! Added suppport for land surface model and radiation model output. In the course
	185	! of this action, the limits for vertical loops have been changed (from nzb and
	186	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	187	! Moreover, a new vertical grid zs was introduced.
[1329]	188	!
[1360]	189	! 1359 2014-04-11 17:15:14Z hoffmann
	190	! New particle structure integrated.
	191	!
[1354]	192	! 1353 2014-04-08 15:21:23Z heinze
	193	! REAL constants provided with KIND-attribute
	194	!
[1329]	195	! 1327 2014-03-21 11:00:16Z raasch
	196	! parts concerning avs output removed,
	197	! -netcdf output queries
	198	!
[1321]	199	! 1320 2014-03-20 08:40:49Z raasch
[1320]	200	! ONLY-attribute added to USE-statements,
	201	! kind-parameters added to all INTEGER and REAL declaration statements,
	202	! kinds are defined in new module kinds,
	203	! old module precision_kind is removed,
	204	! revision history before 2012 removed,
	205	! comment fields (!:) to be used for variable explanations added to
	206	! all variable declaration statements
[674]	207	!
[1319]	208	! 1318 2014-03-17 13:35:16Z raasch
	209	! barrier argument removed from cpu_log,
	210	! module interfaces removed
	211	!
[1309]	212	! 1308 2014-03-13 14:58:42Z fricke
	213	! Check, if the limit of the time dimension is exceeded for parallel output
	214	! To increase the performance for parallel output, the following is done:
	215	! - Update of time axis is only done by PE0
	216	!
[1245]	217	! 1244 2013-10-31 08:16:56Z raasch
	218	! Bugfix for index bounds in case of 3d-parallel output
	219	!
[1116]	220	! 1115 2013-03-26 18:16:16Z hoffmann
	221	! ql is calculated by calc_liquid_water_content
	222	!
[1107]	223	! 1106 2013-03-04 05:31:38Z raasch
	224	! array_kind renamed precision_kind
	225	!
[1077]	226	! 1076 2012-12-05 08:30:18Z hoffmann
	227	! Bugfix in output of ql
	228	!
[1054]	229	! 1053 2012-11-13 17:11:03Z hoffmann
	230	! +nr, qr, prr, qc and averaged quantities
	231	!
[1037]	232	! 1036 2012-10-22 13:43:42Z raasch
	233	! code put under GPL (PALM 3.9)
	234	!
[1035]	235	! 1031 2012-10-19 14:35:30Z raasch
	236	! netCDF4 without parallel file support implemented
	237	!
[1008]	238	! 1007 2012-09-19 14:30:36Z franke
	239	! Bugfix: missing calculation of ql_vp added
	240	!
[1]	241	! Revision 1.1 1997/09/03 06:29:36 raasch
	242	! Initial revision
	243	!
	244	!
	245	! Description:
	246	! ------------
[1682]	247	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	248	!------------------------------------------------------------------------------!
[1682]	249	SUBROUTINE data_output_3d( av )
	250
[1]	251
[1320]	252	USE arrays_3d, &
[3766]	253	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
[3274]	254
[1]	255	USE averaging
[3274]	256
	257	USE basic_constants_and_equations_mod, &
	258	ONLY: lv_d_cp
	259
	260	USE bulk_cloud_model_mod, &
[3637]	261	ONLY: bulk_cloud_model
[3274]	262
[1320]	263	USE control_parameters, &
[3885]	264	ONLY: debug_output, debug_string, &
	265	do3d, do3d_no, do3d_time_count, io_blocks, io_group, &
[3766]	266	land_surface, message_string, ntdim_3d, nz_do3d, psolver, &
	267	time_since_reference_point, urban_surface, varnamelength
[3274]	268
[1320]	269	USE cpulog, &
	270	ONLY: log_point, cpu_log
[2817]	271
[3405]	272	#if defined( __parallel )
[1320]	273	USE indices, &
[3241]	274	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	275	wall_flags_0
[3405]	276	#else
	277	USE indices, &
	278	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	279	nzt, wall_flags_0
	280	#endif
[3274]	281
[1320]	282	USE kinds
[3274]	283
[1551]	284	USE land_surface_model_mod, &
[2232]	285	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	286
[3637]	287	USE module_interface, &
	288	ONLY: module_interface_data_output_3d
	289
[1783]	290	#if defined( __netcdf )
	291	USE NETCDF
	292	#endif
	293
	294	USE netcdf_interface, &
[2696]	295	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	296	netcdf_data_format, netcdf_handle_error
[3294]	297
[1320]	298	USE particle_attributes, &
[1359]	299	ONLY: grid_particles, number_of_particles, particles, &
	300	particle_advection_start, prt_count
[3637]	301
[1]	302	USE pegrid
	303
[1585]	304	USE radiation_model_mod, &
[3814]	305	ONLY: nz_urban_b, nz_urban_t
[1585]	306
[2696]	307	USE turbulence_closure_mod, &
	308	ONLY: tcm_data_output_3d
	309
[2007]	310	USE urban_surface_mod, &
[2696]	311	ONLY: usm_data_output_3d
[1585]	312
[2007]	313
[1]	314	IMPLICIT NONE
	315
[3554]	316	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	317	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	318	INTEGER(iwp) :: i !< loop index
	319	INTEGER(iwp) :: ivar !< variable index
	320	INTEGER(iwp) :: j !< loop index
	321	INTEGER(iwp) :: k !< loop index
	322	INTEGER(iwp) :: n !< loop index
[1682]	323	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	324	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	325
[3554]	326	LOGICAL :: found !< true if output variable was found
	327	LOGICAL :: resorted !< true if variable is resorted
[1]	328
[3554]	329	REAL(wp) :: mean_r !< mean particle radius
	330	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	331	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	332
[3554]	333	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	334
[3554]	335	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
[1]	336
[2011]	337	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	338
[1]	339	!
	340	!-- Return, if nothing to output
	341	IF ( do3d_no(av) == 0 ) RETURN
	342
[3885]	343	IF ( debug_output ) THEN
	344	WRITE( debug_string, * ) 'data_output_3d'
	345	CALL debug_message( debug_string, 'start' )
	346	ENDIF
	347
[1]	348	CALL cpu_log (log_point(14),'data_output_3d','start')
	349
	350	!
	351	!-- Open output file.
[2512]	352	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	353	!-- own file and writes the data of its subdomain in binary format. After the
	354	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	355	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	356	IF ( netcdf_data_format < 5 ) THEN
[2967]	357	#if defined( __parallel )
[1327]	358	CALL check_open( 30 )
[2967]	359	#endif
[1327]	360	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	361	ELSE
[1327]	362	CALL check_open( 106+av*10 )
[493]	363	ENDIF
[1]	364
	365	!
[1745]	366	!-- For parallel netcdf output the time axis must be limited. Return, if this
	367	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	368	!-- the given end time by the length of the given output interval.
	369	IF ( netcdf_data_format > 4 ) THEN
	370	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
[3646]	371	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	372	time_since_reference_point, 's because the maximum ', &
	373	'number of output time levels is ', &
[1745]	374	'exceeded.'
	375	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	376	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	377	RETURN
	378	ENDIF
	379	ENDIF
	380
	381	!
[1031]	382	!-- Update the netCDF time axis
[1308]	383	!-- In case of parallel output, this is only done by PE0 to increase the
	384	!-- performance.
[1]	385	#if defined( __netcdf )
[1308]	386	do3d_time_count(av) = do3d_time_count(av) + 1
	387	IF ( myid == 0 ) THEN
[1327]	388	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	389	(/ time_since_reference_point /), &
	390	start = (/ do3d_time_count(av) /), &
	391	count = (/ 1 /) )
[1783]	392	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	393	ENDIF
	394	#endif
	395
	396	!
	397	!-- Loop over all variables to be written.
[3554]	398	ivar = 1
[1]	399
[3554]	400	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	401
[1]	402	!
[3637]	403	!-- Initiate found flag and resorting flag
	404	found = .FALSE.
	405	resorted = .FALSE.
	406	!
	407	!-- Temporary solution to account for data output within the new urban
[2007]	408	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	409	!-- Store the array chosen on the temporary array.
[3637]	410	nzb_do = nzb
	411	nzt_do = nz_do3d
	412
[3554]	413	trimvar = TRIM( do3d(av,ivar) )
[1551]	414	!
	415	!-- Allocate a temporary array with the desired output dimensions.
[2512]	416	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	417	!
	418	!-- Before each output, set array local_pf to fill value
	419	local_pf = fill_value
	420	!
	421	!-- Set masking flag for topography for not resorted arrays
	422	flag_nr = 0
[1551]	423
[2007]	424	SELECT CASE ( trimvar )
[1]	425
	426	CASE ( 'e' )
	427	IF ( av == 0 ) THEN
	428	to_be_resorted => e
	429	ELSE
[3004]	430	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	431	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	432	e_av = REAL( fill_value, KIND = wp )
	433	ENDIF
[1]	434	to_be_resorted => e_av
	435	ENDIF
	436
[3421]	437	CASE ( 'thetal' )
[771]	438	IF ( av == 0 ) THEN
	439	to_be_resorted => pt
	440	ELSE
[3004]	441	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	442	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	443	lpt_av = REAL( fill_value, KIND = wp )
	444	ENDIF
[771]	445	to_be_resorted => lpt_av
	446	ENDIF
	447
[1]	448	CASE ( 'p' )
	449	IF ( av == 0 ) THEN
[727]	450	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	451	to_be_resorted => p
	452	ELSE
[3004]	453	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	454	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	455	p_av = REAL( fill_value, KIND = wp )
	456	ENDIF
[727]	457	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	458	to_be_resorted => p_av
	459	ENDIF
	460
	461	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	462	IF ( av == 0 ) THEN
[3646]	463	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	464	tend = prt_count
	465	ELSE
	466	tend = 0.0_wp
	467	ENDIF
[2512]	468	DO i = nxl, nxr
	469	DO j = nys, nyn
[1551]	470	DO k = nzb_do, nzt_do
[1]	471	local_pf(i,j,k) = tend(k,j,i)
	472	ENDDO
	473	ENDDO
	474	ENDDO
	475	resorted = .TRUE.
	476	ELSE
[3004]	477	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	478	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	479	pc_av = REAL( fill_value, KIND = wp )
	480	ENDIF
[1]	481	to_be_resorted => pc_av
	482	ENDIF
	483
[1359]	484	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	485	IF ( av == 0 ) THEN
[3646]	486	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	487	DO i = nxl, nxr
	488	DO j = nys, nyn
[1551]	489	DO k = nzb_do, nzt_do
[1359]	490	number_of_particles = prt_count(k,j,i)
	491	IF (number_of_particles <= 0) CYCLE
	492	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	493	s_r2 = 0.0_wp
	494	s_r3 = 0.0_wp
	495	DO n = 1, number_of_particles
	496	IF ( particles(n)%particle_mask ) THEN
	497	s_r2 = s_r2 + particles(n)%radius*2 &
	498	particles(n)%weight_factor
	499	s_r3 = s_r3 + particles(n)%radius*3 &
	500	particles(n)%weight_factor
	501	ENDIF
	502	ENDDO
	503	IF ( s_r2 > 0.0_wp ) THEN
	504	mean_r = s_r3 / s_r2
	505	ELSE
	506	mean_r = 0.0_wp
	507	ENDIF
	508	tend(k,j,i) = mean_r
[1]	509	ENDDO
	510	ENDDO
	511	ENDDO
[1359]	512	ELSE
	513	tend = 0.0_wp
	514	ENDIF
[2512]	515	DO i = nxl, nxr
	516	DO j = nys, nyn
[1551]	517	DO k = nzb_do, nzt_do
[1]	518	local_pf(i,j,k) = tend(k,j,i)
	519	ENDDO
	520	ENDDO
	521	ENDDO
	522	resorted = .TRUE.
	523	ELSE
[3004]	524	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	525	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	526	pr_av = REAL( fill_value, KIND = wp )
	527	ENDIF
[1]	528	to_be_resorted => pr_av
	529	ENDIF
	530
[3421]	531	CASE ( 'theta' )
[1]	532	IF ( av == 0 ) THEN
[3274]	533	IF ( .NOT. bulk_cloud_model ) THEN
[1]	534	to_be_resorted => pt
	535	ELSE
[2512]	536	DO i = nxl, nxr
	537	DO j = nys, nyn
[1551]	538	DO k = nzb_do, nzt_do
[3274]	539	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	540	d_exner(k) * &
[1]	541	ql(k,j,i)
	542	ENDDO
	543	ENDDO
	544	ENDDO
	545	resorted = .TRUE.
	546	ENDIF
	547	ELSE
[3004]	548	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	549	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	550	pt_av = REAL( fill_value, KIND = wp )
	551	ENDIF
[1]	552	to_be_resorted => pt_av
	553	ENDIF
	554
	555	CASE ( 'q' )
	556	IF ( av == 0 ) THEN
	557	to_be_resorted => q
	558	ELSE
[3004]	559	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	560	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	561	q_av = REAL( fill_value, KIND = wp )
	562	ENDIF
[1]	563	to_be_resorted => q_av
	564	ENDIF
[691]	565
[1053]	566	CASE ( 'ql' )
	567	IF ( av == 0 ) THEN
[1115]	568	to_be_resorted => ql
[1053]	569	ELSE
[3004]	570	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	571	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	572	ql_av = REAL( fill_value, KIND = wp )
	573	ENDIF
[1115]	574	to_be_resorted => ql_av
[1053]	575	ENDIF
	576
[1]	577	CASE ( 'ql_c' )
	578	IF ( av == 0 ) THEN
	579	to_be_resorted => ql_c
	580	ELSE
[3004]	581	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	582	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	583	ql_c_av = REAL( fill_value, KIND = wp )
	584	ENDIF
[1]	585	to_be_resorted => ql_c_av
	586	ENDIF
	587
	588	CASE ( 'ql_v' )
	589	IF ( av == 0 ) THEN
	590	to_be_resorted => ql_v
	591	ELSE
[3004]	592	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	593	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	594	ql_v_av = REAL( fill_value, KIND = wp )
	595	ENDIF
[1]	596	to_be_resorted => ql_v_av
	597	ENDIF
	598
	599	CASE ( 'ql_vp' )
	600	IF ( av == 0 ) THEN
[3646]	601	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	602	DO i = nxl, nxr
	603	DO j = nys, nyn
[1551]	604	DO k = nzb_do, nzt_do
[1359]	605	number_of_particles = prt_count(k,j,i)
	606	IF (number_of_particles <= 0) CYCLE
	607	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	608	DO n = 1, number_of_particles
	609	IF ( particles(n)%particle_mask ) THEN
	610	tend(k,j,i) = tend(k,j,i) + &
	611	particles(n)%weight_factor / &
	612	prt_count(k,j,i)
	613	ENDIF
	614	ENDDO
[1007]	615	ENDDO
	616	ENDDO
	617	ENDDO
[1359]	618	ELSE
	619	tend = 0.0_wp
	620	ENDIF
[2512]	621	DO i = nxl, nxr
	622	DO j = nys, nyn
[1551]	623	DO k = nzb_do, nzt_do
[1007]	624	local_pf(i,j,k) = tend(k,j,i)
	625	ENDDO
	626	ENDDO
	627	ENDDO
	628	resorted = .TRUE.
[1]	629	ELSE
[3004]	630	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	631	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	632	ql_vp_av = REAL( fill_value, KIND = wp )
	633	ENDIF
[1]	634	to_be_resorted => ql_vp_av
	635	ENDIF
	636
	637	CASE ( 'qv' )
	638	IF ( av == 0 ) THEN
[2512]	639	DO i = nxl, nxr
	640	DO j = nys, nyn
[1551]	641	DO k = nzb_do, nzt_do
[1]	642	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	643	ENDDO
	644	ENDDO
	645	ENDDO
	646	resorted = .TRUE.
	647	ELSE
[3004]	648	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	649	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	650	qv_av = REAL( fill_value, KIND = wp )
	651	ENDIF
[1]	652	to_be_resorted => qv_av
	653	ENDIF
	654
	655	CASE ( 's' )
	656	IF ( av == 0 ) THEN
[1960]	657	to_be_resorted => s
[1]	658	ELSE
[3004]	659	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	660	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	661	s_av = REAL( fill_value, KIND = wp )
	662	ENDIF
[355]	663	to_be_resorted => s_av
[1]	664	ENDIF
[691]	665
[1]	666	CASE ( 'u' )
[2696]	667	flag_nr = 1
[1]	668	IF ( av == 0 ) THEN
	669	to_be_resorted => u
	670	ELSE
[3004]	671	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	672	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	673	u_av = REAL( fill_value, KIND = wp )
	674	ENDIF
[1]	675	to_be_resorted => u_av
	676	ENDIF
	677
	678	CASE ( 'v' )
[2696]	679	flag_nr = 2
[1]	680	IF ( av == 0 ) THEN
	681	to_be_resorted => v
	682	ELSE
[3004]	683	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	684	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	685	v_av = REAL( fill_value, KIND = wp )
	686	ENDIF
[1]	687	to_be_resorted => v_av
	688	ENDIF
	689
[3421]	690	CASE ( 'thetav' )
[1]	691	IF ( av == 0 ) THEN
	692	to_be_resorted => vpt
	693	ELSE
[3004]	694	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	695	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	696	vpt_av = REAL( fill_value, KIND = wp )
	697	ENDIF
[1]	698	to_be_resorted => vpt_av
	699	ENDIF
	700
	701	CASE ( 'w' )
[2696]	702	flag_nr = 3
[1]	703	IF ( av == 0 ) THEN
	704	to_be_resorted => w
	705	ELSE
[3004]	706	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	707	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	708	w_av = REAL( fill_value, KIND = wp )
	709	ENDIF
[1]	710	to_be_resorted => w_av
	711	ENDIF
	712
	713	CASE DEFAULT
[1972]	714
[3637]	715	IF ( .NOT. found ) THEN
	716	CALL tcm_data_output_3d( av, trimvar, found, local_pf, &
[3274]	717	nzb_do, nzt_do )
	718	resorted = .TRUE.
	719	ENDIF
	720
[3637]	721	!
	722	!-- Quantities of other modules
	723	IF ( .NOT. found ) THEN
	724	CALL module_interface_data_output_3d( &
	725	av, trimvar, found, local_pf, &
	726	fill_value, resorted, nzb_do, nzt_do &
	727	)
[3294]	728	ENDIF
	729
[1972]	730	!
[3637]	731	!-- Temporary workaround: ToDo: refactor local_pf allocation
	732	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
	733	!
	734	!-- For urban model quantities, it is required to re-allocate local_pf
[3814]	735	nzb_do = nz_urban_b
	736	nzt_do = nz_urban_t
[1972]	737
	738	DEALLOCATE ( local_pf )
[2512]	739	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	740	local_pf = fill_value
[1972]	741
[3637]	742	CALL usm_data_output_3d( av, trimvar, found, local_pf, &
	743	nzb_do, nzt_do )
[1972]	744	resorted = .TRUE.
[1976]	745
	746	!
	747	!-- If no soil model variable was found, re-allocate local_pf
	748	IF ( .NOT. found ) THEN
	749	nzb_do = nzb
	750	nzt_do = nz_do3d
	751
	752	DEALLOCATE ( local_pf )
[3637]	753	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	754	ENDIF
	755
[1972]	756	ENDIF
	757
[3637]	758	!
	759	!-- Temporary workaround: ToDo: refactor local_pf allocation
	760	IF ( .NOT. found .AND. land_surface ) THEN
	761	!
	762	!-- For soil model quantities, it is required to re-allocate local_pf
	763	nzb_do = nzb_soil
	764	nzt_do = nzt_soil
[1976]	765
[3637]	766	DEALLOCATE ( local_pf )
	767	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	768	local_pf = fill_value
[2817]	769
[3637]	770	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
[2696]	771	resorted = .TRUE.
	772
[3467]	773	!
[3637]	774	!-- If no soil model variable was found, re-allocate local_pf
	775	IF ( .NOT. found ) THEN
	776	nzb_do = nzb
	777	nzt_do = nz_do3d
[2209]	778
[3637]	779	DEALLOCATE ( local_pf )
	780	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	781	ENDIF
[3448]	782
[1972]	783	ENDIF
[1]	784
[254]	785	IF ( .NOT. found ) THEN
[1320]	786	message_string = 'no output available for: ' // &
[3554]	787	TRIM( do3d(av,ivar) )
[254]	788	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	789	ENDIF
	790
	791	END SELECT
	792
	793	!
	794	!-- Resort the array to be output, if not done above
	795	IF ( .NOT. resorted ) THEN
[2512]	796	DO i = nxl, nxr
	797	DO j = nys, nyn
[1551]	798	DO k = nzb_do, nzt_do
[2696]	799	local_pf(i,j,k) = MERGE( &
	800	to_be_resorted(k,j,i), &
	801	REAL( fill_value, KIND = wp ), &
	802	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	803	ENDDO
	804	ENDDO
	805	ENDDO
	806	ENDIF
	807
	808	!
[1327]	809	!-- Output of the 3D-array
	810	#if defined( __parallel )
	811	IF ( netcdf_data_format < 5 ) THEN
[1]	812	!
[1327]	813	!-- Non-parallel netCDF output. Data is output in parallel in
	814	!-- FORTRAN binary format here, and later collected into one file by
	815	!-- combine_plot_fields
	816	IF ( myid == 0 ) THEN
	817	WRITE ( 30 ) time_since_reference_point, &
	818	do3d_time_count(av), av
[1]	819	ENDIF
[1327]	820	DO i = 0, io_blocks-1
	821	IF ( i == io_group ) THEN
[2512]	822	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	823	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	824	ENDIF
[1972]	825
[1327]	826	CALL MPI_BARRIER( comm2d, ierr )
[1972]	827
[1327]	828	ENDDO
[559]	829
[1327]	830	ELSE
[646]	831	#if defined( __netcdf )
[493]	832	!
[1327]	833	!-- Parallel output in netCDF4/HDF5 format.
[2512]	834	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	835	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	836	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	837	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	838	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	839	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	840	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	841	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	842	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	843	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	844	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	845	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	846	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	847	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	848	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	849	! ELSE
[3554]	850	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	851	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	852	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	853	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	854	! ENDIF
[1783]	855	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	856	#endif
[1327]	857	ENDIF
[1]	858	#else
	859	#if defined( __netcdf )
[3554]	860	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	861	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	862	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	863	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	864	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	865	#endif
	866	#endif
	867
[3554]	868	ivar = ivar + 1
[1]	869
	870	!
[1551]	871	!-- Deallocate temporary array
	872	DEALLOCATE ( local_pf )
[1]	873
[1551]	874	ENDDO
[1]	875
[1318]	876	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	877
[3885]	878	IF ( debug_output ) THEN
	879	WRITE( debug_string, * ) 'data_output_3d'
	880	CALL debug_message( debug_string, 'end' )
	881	ENDIF
	882
[1]	883	END SUBROUTINE data_output_3d

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