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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3862

Last change on this file since 3862 was 3814, checked in by pavelkrc, 6 years ago
Rename conflicting variable names
Property svn:keywords set to `Id`
File size: 30.7 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[3655]	17	! Copyright 1997-2019 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[3589]	22	!
	23	!
	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3814 2019-03-26 08:40:31Z banzhafs $
[3766]	27	! unused variables removed
	28	!
	29	! 3655 2019-01-07 16:51:22Z knoop
[3646]	30	! Bugfix: use time_since_reference_point instead of simulated_time (relevant
	31	! when using wall/soil spinup)
	32	!
	33	! 3637 2018-12-20 01:51:36Z knoop
[3637]	34	! Implementation of the PALM module interface
	35	!
	36	! 3589 2018-11-30 15:09:51Z suehring
[3582]	37	! Move the control parameter "salsa" from salsa_mod to control_parameters
	38	! (M. Kurppa)
	39	!
[3589]	40	! 3582 2018-11-29 19:16:36Z suehring
[3554]	41	! add variable description; rename variable 'if' into 'ivar'
	42	!
	43	! 3525 2018-11-14 16:06:14Z kanani
[3525]	44	! Changes related to clean-up of biometeorology (dom_dwd_user)
	45	!
	46	! 3467 2018-10-30 19:05:21Z suehring
[3467]	47	! Implementation of a new aerosol module salsa.
	48	!
	49	! 3448 2018-10-29 18:14:31Z kanani
[3448]	50	! Adjustment of biometeorology calls
	51	!
	52	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	53	! Renamed output variables
	54	!
	55	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	56	! bugfix: nx, ny are required in non-parallel case
	57	!
	58	! 3337 2018-10-12 15:17:09Z kanani
[3337]	59	! (from branch resler)
	60	! Add Biometeorology
	61	!
	62	! 3294 2018-10-01 02:37:10Z raasch
[3294]	63	! changes concerning modularization of ocean option
	64	!
	65	! 3274 2018-09-24 15:42:55Z knoop
[3274]	66	! Modularization of all bulk cloud physics code components
	67	!
	68	! 3241 2018-09-12 15:02:00Z raasch
[3241]	69	! unused variables and format statements removed
	70	!
	71	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	72	! Error messages revised
	73	!
	74	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	75	! Error message revised
	76	!
	77	! 3014 2018-05-09 08:42:38Z maronga
[3014]	78	! Added nzb_do and nzt_do for some modules for 3d output
	79	!
	80	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	81	! Allocation checks implemented (averaged data will be assigned to fill values
	82	! if no allocation happened so far)
	83	!
	84	! 2967 2018-04-13 11:22:08Z raasch
[2967]	85	! bugfix: missing parallel cpp-directives added
	86	!
	87	! 2817 2018-02-19 16:32:21Z knoop
[2817]	88	! Preliminary gust module interface implemented
	89	!
	90	! 2766 2018-01-22 17:17:47Z kanani
[2766]	91	! Removed preprocessor directive __chem
	92	!
	93	! 2756 2018-01-16 18:11:14Z suehring
[2756]	94	! Fill values for 3D output of chemical species introduced.
	95	!
	96	! 2746 2018-01-15 12:06:04Z suehring
[2746]	97	! Move flag plant canopy to modules
	98	!
	99	! 2718 2018-01-02 08:49:38Z maronga
[2716]	100	! Corrected "Former revisions" section
	101	!
	102	! 2696 2017-12-14 17:12:51Z kanani
	103	! Change in file header (GPL part)
[2696]	104	! Implementation of turbulence_closure_mod (TG)
	105	! Implementation of chemistry module (FK)
	106	! Set fill values at topography grid points or e.g. non-natural-type surface
	107	! in case of LSM output (MS)
	108	!
	109	! 2512 2017-10-04 08:26:59Z raasch
[2512]	110	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	111	! no output of ghost layer data
	112	!
	113	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	114	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	115	! includes two more prognostic equations for cloud drop concentration (nc)
	116	! and cloud water content (qc).
	117	!
	118	! 2233 2017-05-30 18:08:54Z suehring
[1552]	119	!
[2233]	120	! 2232 2017-05-30 17:47:52Z suehring
	121	! Adjustments to new topography concept
	122	!
[2210]	123	! 2209 2017-04-19 09:34:46Z kanani
	124	! Added plant canopy model output
	125	!
[2032]	126	! 2031 2016-10-21 15:11:58Z knoop
	127	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	128	!
[2012]	129	! 2011 2016-09-19 17:29:57Z kanani
	130	! Flag urban_surface is now defined in module control_parameters,
	131	! changed prefix for urban surface model output to "usm_",
	132	! introduced control parameter varnamelength for LEN of trimvar.
	133	!
[2008]	134	! 2007 2016-08-24 15:47:17Z kanani
	135	! Added support for new urban surface model (temporary modifications of
	136	! SELECT CASE ( ) necessary, see variable trimvar)
	137	!
[2001]	138	! 2000 2016-08-20 18:09:15Z knoop
	139	! Forced header and separation lines into 80 columns
	140	!
[1981]	141	! 1980 2016-07-29 15:51:57Z suehring
	142	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	143	! to .F.
	144	!
[1977]	145	! 1976 2016-07-27 13:28:04Z maronga
	146	! Output of radiation quantities is now done directly in the respective module
	147	!
[1973]	148	! 1972 2016-07-26 07:52:02Z maronga
	149	! Output of land surface quantities is now done directly in the respective module.
	150	! Unnecessary directive __parallel removed.
	151	!
[1961]	152	! 1960 2016-07-12 16:34:24Z suehring
	153	! Scalar surface flux added
	154	!
[1851]	155	! 1849 2016-04-08 11:33:18Z hoffmann
	156	! prr moved to arrays_3d
	157	!
[1823]	158	! 1822 2016-04-07 07:49:42Z hoffmann
	159	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	160	!
[1809]	161	! 1808 2016-04-05 19:44:00Z raasch
	162	! test output removed
	163	!
[1784]	164	! 1783 2016-03-06 18:36:17Z raasch
	165	! name change of netcdf routines and module + related changes
	166	!
[1746]	167	! 1745 2016-02-05 13:06:51Z gronemeier
	168	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	169	!
[1692]	170	! 1691 2015-10-26 16:17:44Z maronga
	171	! Added output of radiative heating rates for RRTMG
	172	!
[1683]	173	! 1682 2015-10-07 23:56:08Z knoop
	174	! Code annotations made doxygen readable
	175	!
[1586]	176	! 1585 2015-04-30 07:05:52Z maronga
	177	! Added support for RRTMG
	178	!
[1552]	179	! 1551 2015-03-03 14:18:16Z maronga
[1551]	180	! Added suppport for land surface model and radiation model output. In the course
	181	! of this action, the limits for vertical loops have been changed (from nzb and
	182	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	183	! Moreover, a new vertical grid zs was introduced.
[1329]	184	!
[1360]	185	! 1359 2014-04-11 17:15:14Z hoffmann
	186	! New particle structure integrated.
	187	!
[1354]	188	! 1353 2014-04-08 15:21:23Z heinze
	189	! REAL constants provided with KIND-attribute
	190	!
[1329]	191	! 1327 2014-03-21 11:00:16Z raasch
	192	! parts concerning avs output removed,
	193	! -netcdf output queries
	194	!
[1321]	195	! 1320 2014-03-20 08:40:49Z raasch
[1320]	196	! ONLY-attribute added to USE-statements,
	197	! kind-parameters added to all INTEGER and REAL declaration statements,
	198	! kinds are defined in new module kinds,
	199	! old module precision_kind is removed,
	200	! revision history before 2012 removed,
	201	! comment fields (!:) to be used for variable explanations added to
	202	! all variable declaration statements
[674]	203	!
[1319]	204	! 1318 2014-03-17 13:35:16Z raasch
	205	! barrier argument removed from cpu_log,
	206	! module interfaces removed
	207	!
[1309]	208	! 1308 2014-03-13 14:58:42Z fricke
	209	! Check, if the limit of the time dimension is exceeded for parallel output
	210	! To increase the performance for parallel output, the following is done:
	211	! - Update of time axis is only done by PE0
	212	!
[1245]	213	! 1244 2013-10-31 08:16:56Z raasch
	214	! Bugfix for index bounds in case of 3d-parallel output
	215	!
[1116]	216	! 1115 2013-03-26 18:16:16Z hoffmann
	217	! ql is calculated by calc_liquid_water_content
	218	!
[1107]	219	! 1106 2013-03-04 05:31:38Z raasch
	220	! array_kind renamed precision_kind
	221	!
[1077]	222	! 1076 2012-12-05 08:30:18Z hoffmann
	223	! Bugfix in output of ql
	224	!
[1054]	225	! 1053 2012-11-13 17:11:03Z hoffmann
	226	! +nr, qr, prr, qc and averaged quantities
	227	!
[1037]	228	! 1036 2012-10-22 13:43:42Z raasch
	229	! code put under GPL (PALM 3.9)
	230	!
[1035]	231	! 1031 2012-10-19 14:35:30Z raasch
	232	! netCDF4 without parallel file support implemented
	233	!
[1008]	234	! 1007 2012-09-19 14:30:36Z franke
	235	! Bugfix: missing calculation of ql_vp added
	236	!
[1]	237	! Revision 1.1 1997/09/03 06:29:36 raasch
	238	! Initial revision
	239	!
	240	!
	241	! Description:
	242	! ------------
[1682]	243	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	244	!------------------------------------------------------------------------------!
[1682]	245	SUBROUTINE data_output_3d( av )
	246
[1]	247
[1320]	248	USE arrays_3d, &
[3766]	249	ONLY: d_exner, e, p, pt, q, ql, ql_c, ql_v, s, tend, u, v, vpt, w
[3274]	250
[1]	251	USE averaging
[3274]	252
	253	USE basic_constants_and_equations_mod, &
	254	ONLY: lv_d_cp
	255
	256	USE bulk_cloud_model_mod, &
[3637]	257	ONLY: bulk_cloud_model
[3274]	258
[1320]	259	USE control_parameters, &
[3766]	260	ONLY: do3d, do3d_no, do3d_time_count, io_blocks, io_group, &
	261	land_surface, message_string, ntdim_3d, nz_do3d, psolver, &
	262	time_since_reference_point, urban_surface, varnamelength
[3274]	263
[1320]	264	USE cpulog, &
	265	ONLY: log_point, cpu_log
[2817]	266
[3405]	267	#if defined( __parallel )
[1320]	268	USE indices, &
[3241]	269	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	270	wall_flags_0
[3405]	271	#else
	272	USE indices, &
	273	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	274	nzt, wall_flags_0
	275	#endif
[3274]	276
[1320]	277	USE kinds
[3274]	278
[1551]	279	USE land_surface_model_mod, &
[2232]	280	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	281
[3637]	282	USE module_interface, &
	283	ONLY: module_interface_data_output_3d
	284
[1783]	285	#if defined( __netcdf )
	286	USE NETCDF
	287	#endif
	288
	289	USE netcdf_interface, &
[2696]	290	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	291	netcdf_data_format, netcdf_handle_error
[3294]	292
[1320]	293	USE particle_attributes, &
[1359]	294	ONLY: grid_particles, number_of_particles, particles, &
	295	particle_advection_start, prt_count
[3637]	296
[1]	297	USE pegrid
	298
[1585]	299	USE radiation_model_mod, &
[3814]	300	ONLY: nz_urban_b, nz_urban_t
[1585]	301
[2696]	302	USE turbulence_closure_mod, &
	303	ONLY: tcm_data_output_3d
	304
[2007]	305	USE urban_surface_mod, &
[2696]	306	ONLY: usm_data_output_3d
[1585]	307
[2007]	308
[1]	309	IMPLICIT NONE
	310
[3554]	311	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	312	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	313	INTEGER(iwp) :: i !< loop index
	314	INTEGER(iwp) :: ivar !< variable index
	315	INTEGER(iwp) :: j !< loop index
	316	INTEGER(iwp) :: k !< loop index
	317	INTEGER(iwp) :: n !< loop index
[1682]	318	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	319	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	320
[3554]	321	LOGICAL :: found !< true if output variable was found
	322	LOGICAL :: resorted !< true if variable is resorted
[1]	323
[3554]	324	REAL(wp) :: mean_r !< mean particle radius
	325	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	326	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	327
[3554]	328	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	329
[3554]	330	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
[1]	331
[2011]	332	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	333
[1]	334	!
	335	!-- Return, if nothing to output
	336	IF ( do3d_no(av) == 0 ) RETURN
	337
	338	CALL cpu_log (log_point(14),'data_output_3d','start')
	339
	340	!
	341	!-- Open output file.
[2512]	342	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	343	!-- own file and writes the data of its subdomain in binary format. After the
	344	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	345	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	346	IF ( netcdf_data_format < 5 ) THEN
[2967]	347	#if defined( __parallel )
[1327]	348	CALL check_open( 30 )
[2967]	349	#endif
[1327]	350	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	351	ELSE
[1327]	352	CALL check_open( 106+av*10 )
[493]	353	ENDIF
[1]	354
	355	!
[1745]	356	!-- For parallel netcdf output the time axis must be limited. Return, if this
	357	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	358	!-- the given end time by the length of the given output interval.
	359	IF ( netcdf_data_format > 4 ) THEN
	360	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
[3646]	361	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	362	time_since_reference_point, 's because the maximum ', &
	363	'number of output time levels is ', &
[1745]	364	'exceeded.'
	365	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	366	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	367	RETURN
	368	ENDIF
	369	ENDIF
	370
	371	!
[1031]	372	!-- Update the netCDF time axis
[1308]	373	!-- In case of parallel output, this is only done by PE0 to increase the
	374	!-- performance.
[1]	375	#if defined( __netcdf )
[1308]	376	do3d_time_count(av) = do3d_time_count(av) + 1
	377	IF ( myid == 0 ) THEN
[1327]	378	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	379	(/ time_since_reference_point /), &
	380	start = (/ do3d_time_count(av) /), &
	381	count = (/ 1 /) )
[1783]	382	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	383	ENDIF
	384	#endif
	385
	386	!
	387	!-- Loop over all variables to be written.
[3554]	388	ivar = 1
[1]	389
[3554]	390	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	391
[1]	392	!
[3637]	393	!-- Initiate found flag and resorting flag
	394	found = .FALSE.
	395	resorted = .FALSE.
	396	!
	397	!-- Temporary solution to account for data output within the new urban
[2007]	398	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	399	!-- Store the array chosen on the temporary array.
[3637]	400	nzb_do = nzb
	401	nzt_do = nz_do3d
	402
[3554]	403	trimvar = TRIM( do3d(av,ivar) )
[1551]	404	!
	405	!-- Allocate a temporary array with the desired output dimensions.
[2512]	406	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	407	!
	408	!-- Before each output, set array local_pf to fill value
	409	local_pf = fill_value
	410	!
	411	!-- Set masking flag for topography for not resorted arrays
	412	flag_nr = 0
[1551]	413
[2007]	414	SELECT CASE ( trimvar )
[1]	415
	416	CASE ( 'e' )
	417	IF ( av == 0 ) THEN
	418	to_be_resorted => e
	419	ELSE
[3004]	420	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	421	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	422	e_av = REAL( fill_value, KIND = wp )
	423	ENDIF
[1]	424	to_be_resorted => e_av
	425	ENDIF
	426
[3421]	427	CASE ( 'thetal' )
[771]	428	IF ( av == 0 ) THEN
	429	to_be_resorted => pt
	430	ELSE
[3004]	431	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	432	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	433	lpt_av = REAL( fill_value, KIND = wp )
	434	ENDIF
[771]	435	to_be_resorted => lpt_av
	436	ENDIF
	437
[1]	438	CASE ( 'p' )
	439	IF ( av == 0 ) THEN
[727]	440	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	441	to_be_resorted => p
	442	ELSE
[3004]	443	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	444	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	445	p_av = REAL( fill_value, KIND = wp )
	446	ENDIF
[727]	447	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	448	to_be_resorted => p_av
	449	ENDIF
	450
	451	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	452	IF ( av == 0 ) THEN
[3646]	453	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	454	tend = prt_count
	455	ELSE
	456	tend = 0.0_wp
	457	ENDIF
[2512]	458	DO i = nxl, nxr
	459	DO j = nys, nyn
[1551]	460	DO k = nzb_do, nzt_do
[1]	461	local_pf(i,j,k) = tend(k,j,i)
	462	ENDDO
	463	ENDDO
	464	ENDDO
	465	resorted = .TRUE.
	466	ELSE
[3004]	467	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	468	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	469	pc_av = REAL( fill_value, KIND = wp )
	470	ENDIF
[1]	471	to_be_resorted => pc_av
	472	ENDIF
	473
[1359]	474	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	475	IF ( av == 0 ) THEN
[3646]	476	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	477	DO i = nxl, nxr
	478	DO j = nys, nyn
[1551]	479	DO k = nzb_do, nzt_do
[1359]	480	number_of_particles = prt_count(k,j,i)
	481	IF (number_of_particles <= 0) CYCLE
	482	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	483	s_r2 = 0.0_wp
	484	s_r3 = 0.0_wp
	485	DO n = 1, number_of_particles
	486	IF ( particles(n)%particle_mask ) THEN
	487	s_r2 = s_r2 + particles(n)%radius*2 &
	488	particles(n)%weight_factor
	489	s_r3 = s_r3 + particles(n)%radius*3 &
	490	particles(n)%weight_factor
	491	ENDIF
	492	ENDDO
	493	IF ( s_r2 > 0.0_wp ) THEN
	494	mean_r = s_r3 / s_r2
	495	ELSE
	496	mean_r = 0.0_wp
	497	ENDIF
	498	tend(k,j,i) = mean_r
[1]	499	ENDDO
	500	ENDDO
	501	ENDDO
[1359]	502	ELSE
	503	tend = 0.0_wp
	504	ENDIF
[2512]	505	DO i = nxl, nxr
	506	DO j = nys, nyn
[1551]	507	DO k = nzb_do, nzt_do
[1]	508	local_pf(i,j,k) = tend(k,j,i)
	509	ENDDO
	510	ENDDO
	511	ENDDO
	512	resorted = .TRUE.
	513	ELSE
[3004]	514	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	515	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	516	pr_av = REAL( fill_value, KIND = wp )
	517	ENDIF
[1]	518	to_be_resorted => pr_av
	519	ENDIF
	520
[3421]	521	CASE ( 'theta' )
[1]	522	IF ( av == 0 ) THEN
[3274]	523	IF ( .NOT. bulk_cloud_model ) THEN
[1]	524	to_be_resorted => pt
	525	ELSE
[2512]	526	DO i = nxl, nxr
	527	DO j = nys, nyn
[1551]	528	DO k = nzb_do, nzt_do
[3274]	529	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	530	d_exner(k) * &
[1]	531	ql(k,j,i)
	532	ENDDO
	533	ENDDO
	534	ENDDO
	535	resorted = .TRUE.
	536	ENDIF
	537	ELSE
[3004]	538	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	539	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	540	pt_av = REAL( fill_value, KIND = wp )
	541	ENDIF
[1]	542	to_be_resorted => pt_av
	543	ENDIF
	544
	545	CASE ( 'q' )
	546	IF ( av == 0 ) THEN
	547	to_be_resorted => q
	548	ELSE
[3004]	549	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	550	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	551	q_av = REAL( fill_value, KIND = wp )
	552	ENDIF
[1]	553	to_be_resorted => q_av
	554	ENDIF
[691]	555
[1053]	556	CASE ( 'ql' )
	557	IF ( av == 0 ) THEN
[1115]	558	to_be_resorted => ql
[1053]	559	ELSE
[3004]	560	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	561	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	562	ql_av = REAL( fill_value, KIND = wp )
	563	ENDIF
[1115]	564	to_be_resorted => ql_av
[1053]	565	ENDIF
	566
[1]	567	CASE ( 'ql_c' )
	568	IF ( av == 0 ) THEN
	569	to_be_resorted => ql_c
	570	ELSE
[3004]	571	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	572	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	573	ql_c_av = REAL( fill_value, KIND = wp )
	574	ENDIF
[1]	575	to_be_resorted => ql_c_av
	576	ENDIF
	577
	578	CASE ( 'ql_v' )
	579	IF ( av == 0 ) THEN
	580	to_be_resorted => ql_v
	581	ELSE
[3004]	582	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	583	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	584	ql_v_av = REAL( fill_value, KIND = wp )
	585	ENDIF
[1]	586	to_be_resorted => ql_v_av
	587	ENDIF
	588
	589	CASE ( 'ql_vp' )
	590	IF ( av == 0 ) THEN
[3646]	591	IF ( time_since_reference_point >= particle_advection_start ) THEN
[1359]	592	DO i = nxl, nxr
	593	DO j = nys, nyn
[1551]	594	DO k = nzb_do, nzt_do
[1359]	595	number_of_particles = prt_count(k,j,i)
	596	IF (number_of_particles <= 0) CYCLE
	597	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	598	DO n = 1, number_of_particles
	599	IF ( particles(n)%particle_mask ) THEN
	600	tend(k,j,i) = tend(k,j,i) + &
	601	particles(n)%weight_factor / &
	602	prt_count(k,j,i)
	603	ENDIF
	604	ENDDO
[1007]	605	ENDDO
	606	ENDDO
	607	ENDDO
[1359]	608	ELSE
	609	tend = 0.0_wp
	610	ENDIF
[2512]	611	DO i = nxl, nxr
	612	DO j = nys, nyn
[1551]	613	DO k = nzb_do, nzt_do
[1007]	614	local_pf(i,j,k) = tend(k,j,i)
	615	ENDDO
	616	ENDDO
	617	ENDDO
	618	resorted = .TRUE.
[1]	619	ELSE
[3004]	620	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	621	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	622	ql_vp_av = REAL( fill_value, KIND = wp )
	623	ENDIF
[1]	624	to_be_resorted => ql_vp_av
	625	ENDIF
	626
	627	CASE ( 'qv' )
	628	IF ( av == 0 ) THEN
[2512]	629	DO i = nxl, nxr
	630	DO j = nys, nyn
[1551]	631	DO k = nzb_do, nzt_do
[1]	632	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	633	ENDDO
	634	ENDDO
	635	ENDDO
	636	resorted = .TRUE.
	637	ELSE
[3004]	638	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	639	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	640	qv_av = REAL( fill_value, KIND = wp )
	641	ENDIF
[1]	642	to_be_resorted => qv_av
	643	ENDIF
	644
	645	CASE ( 's' )
	646	IF ( av == 0 ) THEN
[1960]	647	to_be_resorted => s
[1]	648	ELSE
[3004]	649	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	650	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	651	s_av = REAL( fill_value, KIND = wp )
	652	ENDIF
[355]	653	to_be_resorted => s_av
[1]	654	ENDIF
[691]	655
[1]	656	CASE ( 'u' )
[2696]	657	flag_nr = 1
[1]	658	IF ( av == 0 ) THEN
	659	to_be_resorted => u
	660	ELSE
[3004]	661	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	662	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	663	u_av = REAL( fill_value, KIND = wp )
	664	ENDIF
[1]	665	to_be_resorted => u_av
	666	ENDIF
	667
	668	CASE ( 'v' )
[2696]	669	flag_nr = 2
[1]	670	IF ( av == 0 ) THEN
	671	to_be_resorted => v
	672	ELSE
[3004]	673	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	674	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	675	v_av = REAL( fill_value, KIND = wp )
	676	ENDIF
[1]	677	to_be_resorted => v_av
	678	ENDIF
	679
[3421]	680	CASE ( 'thetav' )
[1]	681	IF ( av == 0 ) THEN
	682	to_be_resorted => vpt
	683	ELSE
[3004]	684	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	685	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	686	vpt_av = REAL( fill_value, KIND = wp )
	687	ENDIF
[1]	688	to_be_resorted => vpt_av
	689	ENDIF
	690
	691	CASE ( 'w' )
[2696]	692	flag_nr = 3
[1]	693	IF ( av == 0 ) THEN
	694	to_be_resorted => w
	695	ELSE
[3004]	696	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	697	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	698	w_av = REAL( fill_value, KIND = wp )
	699	ENDIF
[1]	700	to_be_resorted => w_av
	701	ENDIF
	702
	703	CASE DEFAULT
[1972]	704
[3637]	705	IF ( .NOT. found ) THEN
	706	CALL tcm_data_output_3d( av, trimvar, found, local_pf, &
[3274]	707	nzb_do, nzt_do )
	708	resorted = .TRUE.
	709	ENDIF
	710
[3637]	711	!
	712	!-- Quantities of other modules
	713	IF ( .NOT. found ) THEN
	714	CALL module_interface_data_output_3d( &
	715	av, trimvar, found, local_pf, &
	716	fill_value, resorted, nzb_do, nzt_do &
	717	)
[3294]	718	ENDIF
	719
[1972]	720	!
[3637]	721	!-- Temporary workaround: ToDo: refactor local_pf allocation
	722	IF ( .NOT. found .AND. urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
	723	!
	724	!-- For urban model quantities, it is required to re-allocate local_pf
[3814]	725	nzb_do = nz_urban_b
	726	nzt_do = nz_urban_t
[1972]	727
	728	DEALLOCATE ( local_pf )
[2512]	729	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	730	local_pf = fill_value
[1972]	731
[3637]	732	CALL usm_data_output_3d( av, trimvar, found, local_pf, &
	733	nzb_do, nzt_do )
[1972]	734	resorted = .TRUE.
[1976]	735
	736	!
	737	!-- If no soil model variable was found, re-allocate local_pf
	738	IF ( .NOT. found ) THEN
	739	nzb_do = nzb
	740	nzt_do = nz_do3d
	741
	742	DEALLOCATE ( local_pf )
[3637]	743	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	744	ENDIF
	745
[1972]	746	ENDIF
	747
[3637]	748	!
	749	!-- Temporary workaround: ToDo: refactor local_pf allocation
	750	IF ( .NOT. found .AND. land_surface ) THEN
	751	!
	752	!-- For soil model quantities, it is required to re-allocate local_pf
	753	nzb_do = nzb_soil
	754	nzt_do = nzt_soil
[1976]	755
[3637]	756	DEALLOCATE ( local_pf )
	757	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	758	local_pf = fill_value
[2817]	759
[3637]	760	CALL lsm_data_output_3d( av, trimvar, found, local_pf )
[2696]	761	resorted = .TRUE.
	762
[3467]	763	!
[3637]	764	!-- If no soil model variable was found, re-allocate local_pf
	765	IF ( .NOT. found ) THEN
	766	nzb_do = nzb
	767	nzt_do = nz_do3d
[2209]	768
[3637]	769	DEALLOCATE ( local_pf )
	770	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
	771	ENDIF
[3448]	772
[1972]	773	ENDIF
[1]	774
[254]	775	IF ( .NOT. found ) THEN
[1320]	776	message_string = 'no output available for: ' // &
[3554]	777	TRIM( do3d(av,ivar) )
[254]	778	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	779	ENDIF
	780
	781	END SELECT
	782
	783	!
	784	!-- Resort the array to be output, if not done above
	785	IF ( .NOT. resorted ) THEN
[2512]	786	DO i = nxl, nxr
	787	DO j = nys, nyn
[1551]	788	DO k = nzb_do, nzt_do
[2696]	789	local_pf(i,j,k) = MERGE( &
	790	to_be_resorted(k,j,i), &
	791	REAL( fill_value, KIND = wp ), &
	792	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	793	ENDDO
	794	ENDDO
	795	ENDDO
	796	ENDIF
	797
	798	!
[1327]	799	!-- Output of the 3D-array
	800	#if defined( __parallel )
	801	IF ( netcdf_data_format < 5 ) THEN
[1]	802	!
[1327]	803	!-- Non-parallel netCDF output. Data is output in parallel in
	804	!-- FORTRAN binary format here, and later collected into one file by
	805	!-- combine_plot_fields
	806	IF ( myid == 0 ) THEN
	807	WRITE ( 30 ) time_since_reference_point, &
	808	do3d_time_count(av), av
[1]	809	ENDIF
[1327]	810	DO i = 0, io_blocks-1
	811	IF ( i == io_group ) THEN
[2512]	812	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	813	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	814	ENDIF
[1972]	815
[1327]	816	CALL MPI_BARRIER( comm2d, ierr )
[1972]	817
[1327]	818	ENDDO
[559]	819
[1327]	820	ELSE
[646]	821	#if defined( __netcdf )
[493]	822	!
[1327]	823	!-- Parallel output in netCDF4/HDF5 format.
[2512]	824	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	825	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	826	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	827	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	828	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	829	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	830	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	831	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	832	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	833	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	834	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	835	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	836	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	837	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	838	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	839	! ELSE
[3554]	840	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	841	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	842	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	843	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	844	! ENDIF
[1783]	845	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	846	#endif
[1327]	847	ENDIF
[1]	848	#else
	849	#if defined( __netcdf )
[3554]	850	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	851	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	852	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	853	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	854	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	855	#endif
	856	#endif
	857
[3554]	858	ivar = ivar + 1
[1]	859
	860	!
[1551]	861	!-- Deallocate temporary array
	862	DEALLOCATE ( local_pf )
[1]	863
[1551]	864	ENDDO
[1]	865
[1318]	866	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	867
	868	END SUBROUTINE data_output_3d

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