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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3541

Last change on this file since 3541 was 3525, checked in by kanani, 6 years ago
Changes related to clean-up of biometeorology (by dom_dwd_user)
Property svn:keywords set to `Id`
File size: 32.1 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3525 2018-11-14 16:06:14Z gronemeier $
[3525]	27	! Changes related to clean-up of biometeorology (dom_dwd_user)
	28	!
	29	! 3467 2018-10-30 19:05:21Z suehring
[3467]	30	! Implementation of a new aerosol module salsa.
	31	!
	32	! 3448 2018-10-29 18:14:31Z kanani
[3448]	33	! Adjustment of biometeorology calls
	34	!
	35	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	36	! Renamed output variables
	37	!
	38	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	39	! bugfix: nx, ny are required in non-parallel case
	40	!
	41	! 3337 2018-10-12 15:17:09Z kanani
[3337]	42	! (from branch resler)
	43	! Add Biometeorology
	44	!
	45	! 3294 2018-10-01 02:37:10Z raasch
[3294]	46	! changes concerning modularization of ocean option
	47	!
	48	! 3274 2018-09-24 15:42:55Z knoop
[3274]	49	! Modularization of all bulk cloud physics code components
	50	!
	51	! 3241 2018-09-12 15:02:00Z raasch
[3241]	52	! unused variables and format statements removed
	53	!
	54	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	55	! Error messages revised
	56	!
	57	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	58	! Error message revised
	59	!
	60	! 3014 2018-05-09 08:42:38Z maronga
[3014]	61	! Added nzb_do and nzt_do for some modules for 3d output
	62	!
	63	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	64	! Allocation checks implemented (averaged data will be assigned to fill values
	65	! if no allocation happened so far)
	66	!
	67	! 2967 2018-04-13 11:22:08Z raasch
[2967]	68	! bugfix: missing parallel cpp-directives added
	69	!
	70	! 2817 2018-02-19 16:32:21Z knoop
[2817]	71	! Preliminary gust module interface implemented
	72	!
	73	! 2766 2018-01-22 17:17:47Z kanani
[2766]	74	! Removed preprocessor directive __chem
	75	!
	76	! 2756 2018-01-16 18:11:14Z suehring
[2756]	77	! Fill values for 3D output of chemical species introduced.
	78	!
	79	! 2746 2018-01-15 12:06:04Z suehring
[2746]	80	! Move flag plant canopy to modules
	81	!
	82	! 2718 2018-01-02 08:49:38Z maronga
[2716]	83	! Corrected "Former revisions" section
	84	!
	85	! 2696 2017-12-14 17:12:51Z kanani
	86	! Change in file header (GPL part)
[2696]	87	! Implementation of turbulence_closure_mod (TG)
	88	! Implementation of chemistry module (FK)
	89	! Set fill values at topography grid points or e.g. non-natural-type surface
	90	! in case of LSM output (MS)
	91	!
	92	! 2512 2017-10-04 08:26:59Z raasch
[2512]	93	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	94	! no output of ghost layer data
	95	!
	96	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	97	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	98	! includes two more prognostic equations for cloud drop concentration (nc)
	99	! and cloud water content (qc).
	100	!
	101	! 2233 2017-05-30 18:08:54Z suehring
[1552]	102	!
[2233]	103	! 2232 2017-05-30 17:47:52Z suehring
	104	! Adjustments to new topography concept
	105	!
[2210]	106	! 2209 2017-04-19 09:34:46Z kanani
	107	! Added plant canopy model output
	108	!
[2032]	109	! 2031 2016-10-21 15:11:58Z knoop
	110	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	111	!
[2012]	112	! 2011 2016-09-19 17:29:57Z kanani
	113	! Flag urban_surface is now defined in module control_parameters,
	114	! changed prefix for urban surface model output to "usm_",
	115	! introduced control parameter varnamelength for LEN of trimvar.
	116	!
[2008]	117	! 2007 2016-08-24 15:47:17Z kanani
	118	! Added support for new urban surface model (temporary modifications of
	119	! SELECT CASE ( ) necessary, see variable trimvar)
	120	!
[2001]	121	! 2000 2016-08-20 18:09:15Z knoop
	122	! Forced header and separation lines into 80 columns
	123	!
[1981]	124	! 1980 2016-07-29 15:51:57Z suehring
	125	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	126	! to .F.
	127	!
[1977]	128	! 1976 2016-07-27 13:28:04Z maronga
	129	! Output of radiation quantities is now done directly in the respective module
	130	!
[1973]	131	! 1972 2016-07-26 07:52:02Z maronga
	132	! Output of land surface quantities is now done directly in the respective module.
	133	! Unnecessary directive __parallel removed.
	134	!
[1961]	135	! 1960 2016-07-12 16:34:24Z suehring
	136	! Scalar surface flux added
	137	!
[1851]	138	! 1849 2016-04-08 11:33:18Z hoffmann
	139	! prr moved to arrays_3d
	140	!
[1823]	141	! 1822 2016-04-07 07:49:42Z hoffmann
	142	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	143	!
[1809]	144	! 1808 2016-04-05 19:44:00Z raasch
	145	! test output removed
	146	!
[1784]	147	! 1783 2016-03-06 18:36:17Z raasch
	148	! name change of netcdf routines and module + related changes
	149	!
[1746]	150	! 1745 2016-02-05 13:06:51Z gronemeier
	151	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	152	!
[1692]	153	! 1691 2015-10-26 16:17:44Z maronga
	154	! Added output of radiative heating rates for RRTMG
	155	!
[1683]	156	! 1682 2015-10-07 23:56:08Z knoop
	157	! Code annotations made doxygen readable
	158	!
[1586]	159	! 1585 2015-04-30 07:05:52Z maronga
	160	! Added support for RRTMG
	161	!
[1552]	162	! 1551 2015-03-03 14:18:16Z maronga
[1551]	163	! Added suppport for land surface model and radiation model output. In the course
	164	! of this action, the limits for vertical loops have been changed (from nzb and
	165	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	166	! Moreover, a new vertical grid zs was introduced.
[1329]	167	!
[1360]	168	! 1359 2014-04-11 17:15:14Z hoffmann
	169	! New particle structure integrated.
	170	!
[1354]	171	! 1353 2014-04-08 15:21:23Z heinze
	172	! REAL constants provided with KIND-attribute
	173	!
[1329]	174	! 1327 2014-03-21 11:00:16Z raasch
	175	! parts concerning avs output removed,
	176	! -netcdf output queries
	177	!
[1321]	178	! 1320 2014-03-20 08:40:49Z raasch
[1320]	179	! ONLY-attribute added to USE-statements,
	180	! kind-parameters added to all INTEGER and REAL declaration statements,
	181	! kinds are defined in new module kinds,
	182	! old module precision_kind is removed,
	183	! revision history before 2012 removed,
	184	! comment fields (!:) to be used for variable explanations added to
	185	! all variable declaration statements
[674]	186	!
[1319]	187	! 1318 2014-03-17 13:35:16Z raasch
	188	! barrier argument removed from cpu_log,
	189	! module interfaces removed
	190	!
[1309]	191	! 1308 2014-03-13 14:58:42Z fricke
	192	! Check, if the limit of the time dimension is exceeded for parallel output
	193	! To increase the performance for parallel output, the following is done:
	194	! - Update of time axis is only done by PE0
	195	!
[1245]	196	! 1244 2013-10-31 08:16:56Z raasch
	197	! Bugfix for index bounds in case of 3d-parallel output
	198	!
[1116]	199	! 1115 2013-03-26 18:16:16Z hoffmann
	200	! ql is calculated by calc_liquid_water_content
	201	!
[1107]	202	! 1106 2013-03-04 05:31:38Z raasch
	203	! array_kind renamed precision_kind
	204	!
[1077]	205	! 1076 2012-12-05 08:30:18Z hoffmann
	206	! Bugfix in output of ql
	207	!
[1054]	208	! 1053 2012-11-13 17:11:03Z hoffmann
	209	! +nr, qr, prr, qc and averaged quantities
	210	!
[1037]	211	! 1036 2012-10-22 13:43:42Z raasch
	212	! code put under GPL (PALM 3.9)
	213	!
[1035]	214	! 1031 2012-10-19 14:35:30Z raasch
	215	! netCDF4 without parallel file support implemented
	216	!
[1008]	217	! 1007 2012-09-19 14:30:36Z franke
	218	! Bugfix: missing calculation of ql_vp added
	219	!
[1]	220	! Revision 1.1 1997/09/03 06:29:36 raasch
	221	! Initial revision
	222	!
	223	!
	224	! Description:
	225	! ------------
[1682]	226	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	227	!------------------------------------------------------------------------------!
[1682]	228	SUBROUTINE data_output_3d( av )
	229
[1]	230
[1320]	231	USE arrays_3d, &
[3294]	232	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	233	tend, u, v, vpt, w
[3274]	234
[1]	235	USE averaging
[3274]	236
	237	USE basic_constants_and_equations_mod, &
	238	ONLY: lv_d_cp
	239
[3448]	240	USE biometeorology_mod, &
[3525]	241	ONLY: bio_data_output_3d
[3448]	242
[3274]	243	USE bulk_cloud_model_mod, &
	244	ONLY: bulk_cloud_model, bcm_data_output_3d
	245
[2696]	246	USE chemistry_model_mod, &
	247	ONLY: chem_data_output_3d
	248
[1320]	249	USE control_parameters, &
[3448]	250	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	251	io_blocks, io_group, land_surface, message_string, &
[3294]	252	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	253	psolver, simulated_time, time_since_reference_point, &
	254	urban_surface, varnamelength
[3274]	255
[1320]	256	USE cpulog, &
	257	ONLY: log_point, cpu_log
[2817]	258
	259	USE gust_mod, &
	260	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	261
[3405]	262	#if defined( __parallel )
[1320]	263	USE indices, &
[3241]	264	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	265	wall_flags_0
[3405]	266	#else
	267	USE indices, &
	268	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	269	nzt, wall_flags_0
	270	#endif
[3274]	271
[1320]	272	USE kinds
[3274]	273
[1551]	274	USE land_surface_model_mod, &
[2232]	275	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	276
[1783]	277	#if defined( __netcdf )
	278	USE NETCDF
	279	#endif
	280
	281	USE netcdf_interface, &
[2696]	282	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	283	netcdf_data_format, netcdf_handle_error
[1320]	284
[3294]	285	USE ocean_mod, &
	286	ONLY: ocean_data_output_3d
	287
[1320]	288	USE particle_attributes, &
[1359]	289	ONLY: grid_particles, number_of_particles, particles, &
	290	particle_advection_start, prt_count
[1320]	291
[1]	292	USE pegrid
	293
[2209]	294	USE plant_canopy_model_mod, &
[2746]	295	ONLY: pcm_data_output_3d
[2209]	296
[1585]	297	USE radiation_model_mod, &
[2696]	298	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[3467]	299
	300	USE salsa_mod, &
	301	ONLY: salsa, salsa_data_output_3d
[1585]	302
[2696]	303	USE turbulence_closure_mod, &
	304	ONLY: tcm_data_output_3d
	305
[2007]	306	USE urban_surface_mod, &
[2696]	307	ONLY: usm_data_output_3d
[1585]	308
[2007]	309
[1]	310	IMPLICIT NONE
	311
[1682]	312	INTEGER(iwp) :: av !<
[2696]	313	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	314	INTEGER(iwp) :: i !<
	315	INTEGER(iwp) :: if !<
	316	INTEGER(iwp) :: j !<
	317	INTEGER(iwp) :: k !<
	318	INTEGER(iwp) :: n !<
	319	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	320	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	321
[1682]	322	LOGICAL :: found !<
	323	LOGICAL :: resorted !<
[1]	324
[1682]	325	REAL(wp) :: mean_r !<
	326	REAL(wp) :: s_r2 !<
	327	REAL(wp) :: s_r3 !<
[1]	328
[1682]	329	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	330
[1682]	331	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	332
[2011]	333	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	334
[1]	335	!
	336	!-- Return, if nothing to output
	337	IF ( do3d_no(av) == 0 ) RETURN
	338
	339	CALL cpu_log (log_point(14),'data_output_3d','start')
	340
	341	!
	342	!-- Open output file.
[2512]	343	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	344	!-- own file and writes the data of its subdomain in binary format. After the
	345	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	346	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	347	IF ( netcdf_data_format < 5 ) THEN
[2967]	348	#if defined( __parallel )
[1327]	349	CALL check_open( 30 )
[2967]	350	#endif
[1327]	351	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	352	ELSE
[1327]	353	CALL check_open( 106+av*10 )
[493]	354	ENDIF
[1]	355
	356	!
[1745]	357	!-- For parallel netcdf output the time axis must be limited. Return, if this
	358	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	359	!-- the given end time by the length of the given output interval.
	360	IF ( netcdf_data_format > 4 ) THEN
	361	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	362	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	363	simulated_time, '&because the maximum ', &
[1745]	364	'number of output time levels is ', &
	365	'exceeded.'
	366	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	367	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	368	RETURN
	369	ENDIF
	370	ENDIF
	371
	372	!
[1031]	373	!-- Update the netCDF time axis
[1308]	374	!-- In case of parallel output, this is only done by PE0 to increase the
	375	!-- performance.
[1]	376	#if defined( __netcdf )
[1308]	377	do3d_time_count(av) = do3d_time_count(av) + 1
	378	IF ( myid == 0 ) THEN
[1327]	379	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	380	(/ time_since_reference_point /), &
	381	start = (/ do3d_time_count(av) /), &
	382	count = (/ 1 /) )
[1783]	383	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	384	ENDIF
	385	#endif
	386
	387	!
	388	!-- Loop over all variables to be written.
	389	if = 1
	390
	391	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	392
[1]	393	!
[2007]	394	!-- Temporary solution to account for data output within the new urban
	395	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	396	!-- Store the array chosen on the temporary array.
[2007]	397	trimvar = TRIM( do3d(av,if) )
[2011]	398	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	399	trimvar = 'usm_output'
	400	resorted = .TRUE.
	401	nzb_do = nzub
	402	nzt_do = nzut
	403	ELSE
	404	resorted = .FALSE.
	405	nzb_do = nzb
	406	nzt_do = nz_do3d
	407	ENDIF
[1551]	408	!
[1980]	409	!-- Set flag to steer output of radiation, land-surface, or user-defined
	410	!-- quantities
	411	found = .FALSE.
	412	!
[1551]	413	!-- Allocate a temporary array with the desired output dimensions.
[2512]	414	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	415	!
	416	!-- Before each output, set array local_pf to fill value
	417	local_pf = fill_value
	418	!
	419	!-- Set masking flag for topography for not resorted arrays
	420	flag_nr = 0
[1551]	421
[2007]	422	SELECT CASE ( trimvar )
[1]	423
	424	CASE ( 'e' )
	425	IF ( av == 0 ) THEN
	426	to_be_resorted => e
	427	ELSE
[3004]	428	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	429	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	430	e_av = REAL( fill_value, KIND = wp )
	431	ENDIF
[1]	432	to_be_resorted => e_av
	433	ENDIF
	434
[3421]	435	CASE ( 'thetal' )
[771]	436	IF ( av == 0 ) THEN
	437	to_be_resorted => pt
	438	ELSE
[3004]	439	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	440	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	441	lpt_av = REAL( fill_value, KIND = wp )
	442	ENDIF
[771]	443	to_be_resorted => lpt_av
	444	ENDIF
	445
[1]	446	CASE ( 'p' )
	447	IF ( av == 0 ) THEN
[727]	448	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	449	to_be_resorted => p
	450	ELSE
[3004]	451	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	452	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	453	p_av = REAL( fill_value, KIND = wp )
	454	ENDIF
[727]	455	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	456	to_be_resorted => p_av
	457	ENDIF
	458
	459	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	460	IF ( av == 0 ) THEN
[1359]	461	IF ( simulated_time >= particle_advection_start ) THEN
	462	tend = prt_count
	463	ELSE
	464	tend = 0.0_wp
	465	ENDIF
[2512]	466	DO i = nxl, nxr
	467	DO j = nys, nyn
[1551]	468	DO k = nzb_do, nzt_do
[1]	469	local_pf(i,j,k) = tend(k,j,i)
	470	ENDDO
	471	ENDDO
	472	ENDDO
	473	resorted = .TRUE.
	474	ELSE
[3004]	475	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	476	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	477	pc_av = REAL( fill_value, KIND = wp )
	478	ENDIF
[1]	479	to_be_resorted => pc_av
	480	ENDIF
	481
[1359]	482	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	483	IF ( av == 0 ) THEN
[1359]	484	IF ( simulated_time >= particle_advection_start ) THEN
	485	DO i = nxl, nxr
	486	DO j = nys, nyn
[1551]	487	DO k = nzb_do, nzt_do
[1359]	488	number_of_particles = prt_count(k,j,i)
	489	IF (number_of_particles <= 0) CYCLE
	490	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	491	s_r2 = 0.0_wp
	492	s_r3 = 0.0_wp
	493	DO n = 1, number_of_particles
	494	IF ( particles(n)%particle_mask ) THEN
	495	s_r2 = s_r2 + particles(n)%radius*2 &
	496	particles(n)%weight_factor
	497	s_r3 = s_r3 + particles(n)%radius*3 &
	498	particles(n)%weight_factor
	499	ENDIF
	500	ENDDO
	501	IF ( s_r2 > 0.0_wp ) THEN
	502	mean_r = s_r3 / s_r2
	503	ELSE
	504	mean_r = 0.0_wp
	505	ENDIF
	506	tend(k,j,i) = mean_r
[1]	507	ENDDO
	508	ENDDO
	509	ENDDO
[1359]	510	ELSE
	511	tend = 0.0_wp
	512	ENDIF
[2512]	513	DO i = nxl, nxr
	514	DO j = nys, nyn
[1551]	515	DO k = nzb_do, nzt_do
[1]	516	local_pf(i,j,k) = tend(k,j,i)
	517	ENDDO
	518	ENDDO
	519	ENDDO
	520	resorted = .TRUE.
	521	ELSE
[3004]	522	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	523	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	524	pr_av = REAL( fill_value, KIND = wp )
	525	ENDIF
[1]	526	to_be_resorted => pr_av
	527	ENDIF
	528
[3421]	529	CASE ( 'theta' )
[1]	530	IF ( av == 0 ) THEN
[3274]	531	IF ( .NOT. bulk_cloud_model ) THEN
[1]	532	to_be_resorted => pt
	533	ELSE
[2512]	534	DO i = nxl, nxr
	535	DO j = nys, nyn
[1551]	536	DO k = nzb_do, nzt_do
[3274]	537	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	538	d_exner(k) * &
[1]	539	ql(k,j,i)
	540	ENDDO
	541	ENDDO
	542	ENDDO
	543	resorted = .TRUE.
	544	ENDIF
	545	ELSE
[3004]	546	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	547	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	548	pt_av = REAL( fill_value, KIND = wp )
	549	ENDIF
[1]	550	to_be_resorted => pt_av
	551	ENDIF
	552
	553	CASE ( 'q' )
	554	IF ( av == 0 ) THEN
	555	to_be_resorted => q
	556	ELSE
[3004]	557	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	558	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	559	q_av = REAL( fill_value, KIND = wp )
	560	ENDIF
[1]	561	to_be_resorted => q_av
	562	ENDIF
[691]	563
[1053]	564	CASE ( 'ql' )
	565	IF ( av == 0 ) THEN
[1115]	566	to_be_resorted => ql
[1053]	567	ELSE
[3004]	568	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	569	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	570	ql_av = REAL( fill_value, KIND = wp )
	571	ENDIF
[1115]	572	to_be_resorted => ql_av
[1053]	573	ENDIF
	574
[1]	575	CASE ( 'ql_c' )
	576	IF ( av == 0 ) THEN
	577	to_be_resorted => ql_c
	578	ELSE
[3004]	579	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	580	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	581	ql_c_av = REAL( fill_value, KIND = wp )
	582	ENDIF
[1]	583	to_be_resorted => ql_c_av
	584	ENDIF
	585
	586	CASE ( 'ql_v' )
	587	IF ( av == 0 ) THEN
	588	to_be_resorted => ql_v
	589	ELSE
[3004]	590	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	591	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	592	ql_v_av = REAL( fill_value, KIND = wp )
	593	ENDIF
[1]	594	to_be_resorted => ql_v_av
	595	ENDIF
	596
	597	CASE ( 'ql_vp' )
	598	IF ( av == 0 ) THEN
[1359]	599	IF ( simulated_time >= particle_advection_start ) THEN
	600	DO i = nxl, nxr
	601	DO j = nys, nyn
[1551]	602	DO k = nzb_do, nzt_do
[1359]	603	number_of_particles = prt_count(k,j,i)
	604	IF (number_of_particles <= 0) CYCLE
	605	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	606	DO n = 1, number_of_particles
	607	IF ( particles(n)%particle_mask ) THEN
	608	tend(k,j,i) = tend(k,j,i) + &
	609	particles(n)%weight_factor / &
	610	prt_count(k,j,i)
	611	ENDIF
	612	ENDDO
[1007]	613	ENDDO
	614	ENDDO
	615	ENDDO
[1359]	616	ELSE
	617	tend = 0.0_wp
	618	ENDIF
[2512]	619	DO i = nxl, nxr
	620	DO j = nys, nyn
[1551]	621	DO k = nzb_do, nzt_do
[1007]	622	local_pf(i,j,k) = tend(k,j,i)
	623	ENDDO
	624	ENDDO
	625	ENDDO
	626	resorted = .TRUE.
[1]	627	ELSE
[3004]	628	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	629	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	630	ql_vp_av = REAL( fill_value, KIND = wp )
	631	ENDIF
[1]	632	to_be_resorted => ql_vp_av
	633	ENDIF
	634
	635	CASE ( 'qv' )
	636	IF ( av == 0 ) THEN
[2512]	637	DO i = nxl, nxr
	638	DO j = nys, nyn
[1551]	639	DO k = nzb_do, nzt_do
[1]	640	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	641	ENDDO
	642	ENDDO
	643	ENDDO
	644	resorted = .TRUE.
	645	ELSE
[3004]	646	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	647	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	648	qv_av = REAL( fill_value, KIND = wp )
	649	ENDIF
[1]	650	to_be_resorted => qv_av
	651	ENDIF
	652
	653	CASE ( 's' )
	654	IF ( av == 0 ) THEN
[1960]	655	to_be_resorted => s
[1]	656	ELSE
[3004]	657	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	658	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	659	s_av = REAL( fill_value, KIND = wp )
	660	ENDIF
[355]	661	to_be_resorted => s_av
[1]	662	ENDIF
[691]	663
[1]	664	CASE ( 'u' )
[2696]	665	flag_nr = 1
[1]	666	IF ( av == 0 ) THEN
	667	to_be_resorted => u
	668	ELSE
[3004]	669	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	670	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	671	u_av = REAL( fill_value, KIND = wp )
	672	ENDIF
[1]	673	to_be_resorted => u_av
	674	ENDIF
	675
	676	CASE ( 'v' )
[2696]	677	flag_nr = 2
[1]	678	IF ( av == 0 ) THEN
	679	to_be_resorted => v
	680	ELSE
[3004]	681	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	682	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	683	v_av = REAL( fill_value, KIND = wp )
	684	ENDIF
[1]	685	to_be_resorted => v_av
	686	ENDIF
	687
[3421]	688	CASE ( 'thetav' )
[1]	689	IF ( av == 0 ) THEN
	690	to_be_resorted => vpt
	691	ELSE
[3004]	692	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	693	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	694	vpt_av = REAL( fill_value, KIND = wp )
	695	ENDIF
[1]	696	to_be_resorted => vpt_av
	697	ENDIF
	698
	699	CASE ( 'w' )
[2696]	700	flag_nr = 3
[1]	701	IF ( av == 0 ) THEN
	702	to_be_resorted => w
	703	ELSE
[3004]	704	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	705	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	706	w_av = REAL( fill_value, KIND = wp )
	707	ENDIF
[1]	708	to_be_resorted => w_av
	709	ENDIF
[2007]	710	!
	711	!-- Block of urban surface model outputs
	712	CASE ( 'usm_output' )
[3274]	713	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	714	nzb_do, nzt_do )
[1]	715
	716	CASE DEFAULT
[1972]	717
[1]	718	!
[3294]	719	!-- Quantities of other modules
[3274]	720	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	721	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	722	nzb_do, nzt_do )
	723	resorted = .TRUE.
	724	ENDIF
	725
[3294]	726	IF ( .NOT. found .AND. air_chemistry ) THEN
	727	CALL chem_data_output_3d( av, do3d(av,if), found, &
	728	local_pf, fill_value, nzb_do, nzt_do )
	729	resorted = .TRUE.
	730	ENDIF
	731
	732	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	733	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	734	nzb_do, nzt_do )
	735	resorted = .TRUE.
	736	ENDIF
	737
[3274]	738	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	739	!
	740	!-- For soil model quantities, it is required to re-allocate local_pf
	741	nzb_do = nzb_soil
	742	nzt_do = nzt_soil
	743
	744	DEALLOCATE ( local_pf )
[2512]	745	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	746	local_pf = fill_value
[1972]	747
	748	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	749	resorted = .TRUE.
[1976]	750
	751	!
	752	!-- If no soil model variable was found, re-allocate local_pf
	753	IF ( .NOT. found ) THEN
	754	nzb_do = nzb
	755	nzt_do = nz_do3d
	756
	757	DEALLOCATE ( local_pf )
[2512]	758	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	759	ENDIF
	760
[1972]	761	ENDIF
	762
[3294]	763	IF ( .NOT. found .AND. ocean_mode ) THEN
	764	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	765	nzb_do, nzt_do )
[1976]	766	resorted = .TRUE.
	767	ENDIF
	768
[3294]	769	IF ( .NOT. found .AND. plant_canopy ) THEN
	770	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	771	fill_value, nzb_do, nzt_do )
[2817]	772	resorted = .TRUE.
	773	ENDIF
	774
[3294]	775	IF ( .NOT. found .AND. radiation ) THEN
	776	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	777	local_pf, nzb_do, nzt_do )
[2696]	778	resorted = .TRUE.
	779	ENDIF
	780
[3294]	781	IF ( .NOT. found ) THEN
	782	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	783	nzb_do, nzt_do )
[2209]	784	resorted = .TRUE.
	785	ENDIF
[3467]	786
	787	!
	788	!-- SALSA output
	789	IF ( .NOT. found .AND. salsa ) THEN
	790	CALL salsa_data_output_3d( av, do3d(av,if), found, local_pf )
	791	resorted = .TRUE.
	792	ENDIF
[2209]	793
[3448]	794	IF ( .NOT. found .AND. biometeorology ) THEN
[3525]	795	CALL bio_data_output_3d( av, do3d(av,if), found, local_pf, &
	796	nzb_do, nzt_do )
[3448]	797	ENDIF
	798
[2209]	799	!
[3294]	800	!-- User defined quantities
[1972]	801	IF ( .NOT. found ) THEN
	802	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	803	nzb_do, nzt_do )
	804	resorted = .TRUE.
	805	ENDIF
[1]	806
[254]	807	IF ( .NOT. found ) THEN
[1320]	808	message_string = 'no output available for: ' // &
[274]	809	TRIM( do3d(av,if) )
[254]	810	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	811	ENDIF
	812
	813	END SELECT
	814
	815	!
	816	!-- Resort the array to be output, if not done above
	817	IF ( .NOT. resorted ) THEN
[2512]	818	DO i = nxl, nxr
	819	DO j = nys, nyn
[1551]	820	DO k = nzb_do, nzt_do
[2696]	821	local_pf(i,j,k) = MERGE( &
	822	to_be_resorted(k,j,i), &
	823	REAL( fill_value, KIND = wp ), &
	824	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	825	ENDDO
	826	ENDDO
	827	ENDDO
	828	ENDIF
	829
	830	!
[1327]	831	!-- Output of the 3D-array
	832	#if defined( __parallel )
	833	IF ( netcdf_data_format < 5 ) THEN
[1]	834	!
[1327]	835	!-- Non-parallel netCDF output. Data is output in parallel in
	836	!-- FORTRAN binary format here, and later collected into one file by
	837	!-- combine_plot_fields
	838	IF ( myid == 0 ) THEN
	839	WRITE ( 30 ) time_since_reference_point, &
	840	do3d_time_count(av), av
[1]	841	ENDIF
[1327]	842	DO i = 0, io_blocks-1
	843	IF ( i == io_group ) THEN
[2512]	844	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	845	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	846	ENDIF
[1972]	847
[1327]	848	CALL MPI_BARRIER( comm2d, ierr )
[1972]	849
[1327]	850	ENDDO
[559]	851
[1327]	852	ELSE
[646]	853	#if defined( __netcdf )
[493]	854	!
[1327]	855	!-- Parallel output in netCDF4/HDF5 format.
[2512]	856	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	857	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	858	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	859	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	860	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	861	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	862	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	863	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	864	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	865	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	866	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	867	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	868	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	869	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	870	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	871	! ELSE
[1327]	872	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	873	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	874	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	875	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	876	! ENDIF
[1783]	877	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	878	#endif
[1327]	879	ENDIF
[1]	880	#else
	881	#if defined( __netcdf )
[1327]	882	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	883	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	884	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	885	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	886	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	887	#endif
	888	#endif
	889
	890	if = if + 1
	891
	892	!
[1551]	893	!-- Deallocate temporary array
	894	DEALLOCATE ( local_pf )
[1]	895
[1551]	896	ENDDO
[1]	897
[1318]	898	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	899
	900	END SUBROUTINE data_output_3d

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