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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3507

Last change on this file since 3507 was 3467, checked in by suehring, 6 years ago
Branch salsa @3446 re-integrated into trunk
Property svn:keywords set to `Id`
File size: 32.0 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3467 2018-10-30 19:05:21Z schwenkel $
[3467]	27	! Implementation of a new aerosol module salsa.
	28	!
	29	! 3448 2018-10-29 18:14:31Z kanani
[3448]	30	! Adjustment of biometeorology calls
	31	!
	32	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	33	! Renamed output variables
	34	!
	35	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	36	! bugfix: nx, ny are required in non-parallel case
	37	!
	38	! 3337 2018-10-12 15:17:09Z kanani
[3337]	39	! (from branch resler)
	40	! Add Biometeorology
	41	!
	42	! 3294 2018-10-01 02:37:10Z raasch
[3294]	43	! changes concerning modularization of ocean option
	44	!
	45	! 3274 2018-09-24 15:42:55Z knoop
[3274]	46	! Modularization of all bulk cloud physics code components
	47	!
	48	! 3241 2018-09-12 15:02:00Z raasch
[3241]	49	! unused variables and format statements removed
	50	!
	51	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	52	! Error messages revised
	53	!
	54	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	55	! Error message revised
	56	!
	57	! 3014 2018-05-09 08:42:38Z maronga
[3014]	58	! Added nzb_do and nzt_do for some modules for 3d output
	59	!
	60	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	61	! Allocation checks implemented (averaged data will be assigned to fill values
	62	! if no allocation happened so far)
	63	!
	64	! 2967 2018-04-13 11:22:08Z raasch
[2967]	65	! bugfix: missing parallel cpp-directives added
	66	!
	67	! 2817 2018-02-19 16:32:21Z knoop
[2817]	68	! Preliminary gust module interface implemented
	69	!
	70	! 2766 2018-01-22 17:17:47Z kanani
[2766]	71	! Removed preprocessor directive __chem
	72	!
	73	! 2756 2018-01-16 18:11:14Z suehring
[2756]	74	! Fill values for 3D output of chemical species introduced.
	75	!
	76	! 2746 2018-01-15 12:06:04Z suehring
[2746]	77	! Move flag plant canopy to modules
	78	!
	79	! 2718 2018-01-02 08:49:38Z maronga
[2716]	80	! Corrected "Former revisions" section
	81	!
	82	! 2696 2017-12-14 17:12:51Z kanani
	83	! Change in file header (GPL part)
[2696]	84	! Implementation of turbulence_closure_mod (TG)
	85	! Implementation of chemistry module (FK)
	86	! Set fill values at topography grid points or e.g. non-natural-type surface
	87	! in case of LSM output (MS)
	88	!
	89	! 2512 2017-10-04 08:26:59Z raasch
[2512]	90	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	91	! no output of ghost layer data
	92	!
	93	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	94	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	95	! includes two more prognostic equations for cloud drop concentration (nc)
	96	! and cloud water content (qc).
	97	!
	98	! 2233 2017-05-30 18:08:54Z suehring
[1552]	99	!
[2233]	100	! 2232 2017-05-30 17:47:52Z suehring
	101	! Adjustments to new topography concept
	102	!
[2210]	103	! 2209 2017-04-19 09:34:46Z kanani
	104	! Added plant canopy model output
	105	!
[2032]	106	! 2031 2016-10-21 15:11:58Z knoop
	107	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	108	!
[2012]	109	! 2011 2016-09-19 17:29:57Z kanani
	110	! Flag urban_surface is now defined in module control_parameters,
	111	! changed prefix for urban surface model output to "usm_",
	112	! introduced control parameter varnamelength for LEN of trimvar.
	113	!
[2008]	114	! 2007 2016-08-24 15:47:17Z kanani
	115	! Added support for new urban surface model (temporary modifications of
	116	! SELECT CASE ( ) necessary, see variable trimvar)
	117	!
[2001]	118	! 2000 2016-08-20 18:09:15Z knoop
	119	! Forced header and separation lines into 80 columns
	120	!
[1981]	121	! 1980 2016-07-29 15:51:57Z suehring
	122	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	123	! to .F.
	124	!
[1977]	125	! 1976 2016-07-27 13:28:04Z maronga
	126	! Output of radiation quantities is now done directly in the respective module
	127	!
[1973]	128	! 1972 2016-07-26 07:52:02Z maronga
	129	! Output of land surface quantities is now done directly in the respective module.
	130	! Unnecessary directive __parallel removed.
	131	!
[1961]	132	! 1960 2016-07-12 16:34:24Z suehring
	133	! Scalar surface flux added
	134	!
[1851]	135	! 1849 2016-04-08 11:33:18Z hoffmann
	136	! prr moved to arrays_3d
	137	!
[1823]	138	! 1822 2016-04-07 07:49:42Z hoffmann
	139	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	140	!
[1809]	141	! 1808 2016-04-05 19:44:00Z raasch
	142	! test output removed
	143	!
[1784]	144	! 1783 2016-03-06 18:36:17Z raasch
	145	! name change of netcdf routines and module + related changes
	146	!
[1746]	147	! 1745 2016-02-05 13:06:51Z gronemeier
	148	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	149	!
[1692]	150	! 1691 2015-10-26 16:17:44Z maronga
	151	! Added output of radiative heating rates for RRTMG
	152	!
[1683]	153	! 1682 2015-10-07 23:56:08Z knoop
	154	! Code annotations made doxygen readable
	155	!
[1586]	156	! 1585 2015-04-30 07:05:52Z maronga
	157	! Added support for RRTMG
	158	!
[1552]	159	! 1551 2015-03-03 14:18:16Z maronga
[1551]	160	! Added suppport for land surface model and radiation model output. In the course
	161	! of this action, the limits for vertical loops have been changed (from nzb and
	162	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	163	! Moreover, a new vertical grid zs was introduced.
[1329]	164	!
[1360]	165	! 1359 2014-04-11 17:15:14Z hoffmann
	166	! New particle structure integrated.
	167	!
[1354]	168	! 1353 2014-04-08 15:21:23Z heinze
	169	! REAL constants provided with KIND-attribute
	170	!
[1329]	171	! 1327 2014-03-21 11:00:16Z raasch
	172	! parts concerning avs output removed,
	173	! -netcdf output queries
	174	!
[1321]	175	! 1320 2014-03-20 08:40:49Z raasch
[1320]	176	! ONLY-attribute added to USE-statements,
	177	! kind-parameters added to all INTEGER and REAL declaration statements,
	178	! kinds are defined in new module kinds,
	179	! old module precision_kind is removed,
	180	! revision history before 2012 removed,
	181	! comment fields (!:) to be used for variable explanations added to
	182	! all variable declaration statements
[674]	183	!
[1319]	184	! 1318 2014-03-17 13:35:16Z raasch
	185	! barrier argument removed from cpu_log,
	186	! module interfaces removed
	187	!
[1309]	188	! 1308 2014-03-13 14:58:42Z fricke
	189	! Check, if the limit of the time dimension is exceeded for parallel output
	190	! To increase the performance for parallel output, the following is done:
	191	! - Update of time axis is only done by PE0
	192	!
[1245]	193	! 1244 2013-10-31 08:16:56Z raasch
	194	! Bugfix for index bounds in case of 3d-parallel output
	195	!
[1116]	196	! 1115 2013-03-26 18:16:16Z hoffmann
	197	! ql is calculated by calc_liquid_water_content
	198	!
[1107]	199	! 1106 2013-03-04 05:31:38Z raasch
	200	! array_kind renamed precision_kind
	201	!
[1077]	202	! 1076 2012-12-05 08:30:18Z hoffmann
	203	! Bugfix in output of ql
	204	!
[1054]	205	! 1053 2012-11-13 17:11:03Z hoffmann
	206	! +nr, qr, prr, qc and averaged quantities
	207	!
[1037]	208	! 1036 2012-10-22 13:43:42Z raasch
	209	! code put under GPL (PALM 3.9)
	210	!
[1035]	211	! 1031 2012-10-19 14:35:30Z raasch
	212	! netCDF4 without parallel file support implemented
	213	!
[1008]	214	! 1007 2012-09-19 14:30:36Z franke
	215	! Bugfix: missing calculation of ql_vp added
	216	!
[1]	217	! Revision 1.1 1997/09/03 06:29:36 raasch
	218	! Initial revision
	219	!
	220	!
	221	! Description:
	222	! ------------
[1682]	223	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	224	!------------------------------------------------------------------------------!
[1682]	225	SUBROUTINE data_output_3d( av )
	226
[1]	227
[1320]	228	USE arrays_3d, &
[3294]	229	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	230	tend, u, v, vpt, w
[3274]	231
[1]	232	USE averaging
[3274]	233
	234	USE basic_constants_and_equations_mod, &
	235	ONLY: lv_d_cp
	236
[3448]	237	USE biometeorology_mod, &
	238	ONLY: biom_data_output_3d
	239
[3274]	240	USE bulk_cloud_model_mod, &
	241	ONLY: bulk_cloud_model, bcm_data_output_3d
	242
[2696]	243	USE chemistry_model_mod, &
	244	ONLY: chem_data_output_3d
	245
[1320]	246	USE control_parameters, &
[3448]	247	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	248	io_blocks, io_group, land_surface, message_string, &
[3294]	249	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	250	psolver, simulated_time, time_since_reference_point, &
	251	urban_surface, varnamelength
[3274]	252
[1320]	253	USE cpulog, &
	254	ONLY: log_point, cpu_log
[2817]	255
	256	USE gust_mod, &
	257	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	258
[3405]	259	#if defined( __parallel )
[1320]	260	USE indices, &
[3241]	261	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	262	wall_flags_0
[3405]	263	#else
	264	USE indices, &
	265	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	266	nzt, wall_flags_0
	267	#endif
[3274]	268
[1320]	269	USE kinds
[3274]	270
[1551]	271	USE land_surface_model_mod, &
[2232]	272	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	273
[1783]	274	#if defined( __netcdf )
	275	USE NETCDF
	276	#endif
	277
	278	USE netcdf_interface, &
[2696]	279	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	280	netcdf_data_format, netcdf_handle_error
[1320]	281
[3294]	282	USE ocean_mod, &
	283	ONLY: ocean_data_output_3d
	284
[1320]	285	USE particle_attributes, &
[1359]	286	ONLY: grid_particles, number_of_particles, particles, &
	287	particle_advection_start, prt_count
[1320]	288
[1]	289	USE pegrid
	290
[2209]	291	USE plant_canopy_model_mod, &
[2746]	292	ONLY: pcm_data_output_3d
[2209]	293
[1585]	294	USE radiation_model_mod, &
[2696]	295	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[3467]	296
	297	USE salsa_mod, &
	298	ONLY: salsa, salsa_data_output_3d
[1585]	299
[2696]	300	USE turbulence_closure_mod, &
	301	ONLY: tcm_data_output_3d
	302
[2007]	303	USE urban_surface_mod, &
[2696]	304	ONLY: usm_data_output_3d
[1585]	305
[2007]	306
[1]	307	IMPLICIT NONE
	308
[1682]	309	INTEGER(iwp) :: av !<
[2696]	310	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	311	INTEGER(iwp) :: i !<
	312	INTEGER(iwp) :: if !<
	313	INTEGER(iwp) :: j !<
	314	INTEGER(iwp) :: k !<
	315	INTEGER(iwp) :: n !<
	316	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	317	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	318
[1682]	319	LOGICAL :: found !<
	320	LOGICAL :: resorted !<
[1]	321
[1682]	322	REAL(wp) :: mean_r !<
	323	REAL(wp) :: s_r2 !<
	324	REAL(wp) :: s_r3 !<
[1]	325
[1682]	326	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	327
[1682]	328	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	329
[2011]	330	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	331
[1]	332	!
	333	!-- Return, if nothing to output
	334	IF ( do3d_no(av) == 0 ) RETURN
	335
	336	CALL cpu_log (log_point(14),'data_output_3d','start')
	337
	338	!
	339	!-- Open output file.
[2512]	340	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	341	!-- own file and writes the data of its subdomain in binary format. After the
	342	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	343	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	344	IF ( netcdf_data_format < 5 ) THEN
[2967]	345	#if defined( __parallel )
[1327]	346	CALL check_open( 30 )
[2967]	347	#endif
[1327]	348	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	349	ELSE
[1327]	350	CALL check_open( 106+av*10 )
[493]	351	ENDIF
[1]	352
	353	!
[1745]	354	!-- For parallel netcdf output the time axis must be limited. Return, if this
	355	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	356	!-- the given end time by the length of the given output interval.
	357	IF ( netcdf_data_format > 4 ) THEN
	358	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	359	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	360	simulated_time, '&because the maximum ', &
[1745]	361	'number of output time levels is ', &
	362	'exceeded.'
	363	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	364	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	365	RETURN
	366	ENDIF
	367	ENDIF
	368
	369	!
[1031]	370	!-- Update the netCDF time axis
[1308]	371	!-- In case of parallel output, this is only done by PE0 to increase the
	372	!-- performance.
[1]	373	#if defined( __netcdf )
[1308]	374	do3d_time_count(av) = do3d_time_count(av) + 1
	375	IF ( myid == 0 ) THEN
[1327]	376	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	377	(/ time_since_reference_point /), &
	378	start = (/ do3d_time_count(av) /), &
	379	count = (/ 1 /) )
[1783]	380	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	381	ENDIF
	382	#endif
	383
	384	!
	385	!-- Loop over all variables to be written.
	386	if = 1
	387
	388	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	389
[1]	390	!
[2007]	391	!-- Temporary solution to account for data output within the new urban
	392	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	393	!-- Store the array chosen on the temporary array.
[2007]	394	trimvar = TRIM( do3d(av,if) )
[2011]	395	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	396	trimvar = 'usm_output'
	397	resorted = .TRUE.
	398	nzb_do = nzub
	399	nzt_do = nzut
	400	ELSE
	401	resorted = .FALSE.
	402	nzb_do = nzb
	403	nzt_do = nz_do3d
	404	ENDIF
[1551]	405	!
[1980]	406	!-- Set flag to steer output of radiation, land-surface, or user-defined
	407	!-- quantities
	408	found = .FALSE.
	409	!
[1551]	410	!-- Allocate a temporary array with the desired output dimensions.
[2512]	411	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	412	!
	413	!-- Before each output, set array local_pf to fill value
	414	local_pf = fill_value
	415	!
	416	!-- Set masking flag for topography for not resorted arrays
	417	flag_nr = 0
[1551]	418
[2007]	419	SELECT CASE ( trimvar )
[1]	420
	421	CASE ( 'e' )
	422	IF ( av == 0 ) THEN
	423	to_be_resorted => e
	424	ELSE
[3004]	425	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	426	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	427	e_av = REAL( fill_value, KIND = wp )
	428	ENDIF
[1]	429	to_be_resorted => e_av
	430	ENDIF
	431
[3421]	432	CASE ( 'thetal' )
[771]	433	IF ( av == 0 ) THEN
	434	to_be_resorted => pt
	435	ELSE
[3004]	436	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	437	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	438	lpt_av = REAL( fill_value, KIND = wp )
	439	ENDIF
[771]	440	to_be_resorted => lpt_av
	441	ENDIF
	442
[1]	443	CASE ( 'p' )
	444	IF ( av == 0 ) THEN
[727]	445	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	446	to_be_resorted => p
	447	ELSE
[3004]	448	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	449	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	450	p_av = REAL( fill_value, KIND = wp )
	451	ENDIF
[727]	452	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	453	to_be_resorted => p_av
	454	ENDIF
	455
	456	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	457	IF ( av == 0 ) THEN
[1359]	458	IF ( simulated_time >= particle_advection_start ) THEN
	459	tend = prt_count
	460	ELSE
	461	tend = 0.0_wp
	462	ENDIF
[2512]	463	DO i = nxl, nxr
	464	DO j = nys, nyn
[1551]	465	DO k = nzb_do, nzt_do
[1]	466	local_pf(i,j,k) = tend(k,j,i)
	467	ENDDO
	468	ENDDO
	469	ENDDO
	470	resorted = .TRUE.
	471	ELSE
[3004]	472	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	473	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	474	pc_av = REAL( fill_value, KIND = wp )
	475	ENDIF
[1]	476	to_be_resorted => pc_av
	477	ENDIF
	478
[1359]	479	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	480	IF ( av == 0 ) THEN
[1359]	481	IF ( simulated_time >= particle_advection_start ) THEN
	482	DO i = nxl, nxr
	483	DO j = nys, nyn
[1551]	484	DO k = nzb_do, nzt_do
[1359]	485	number_of_particles = prt_count(k,j,i)
	486	IF (number_of_particles <= 0) CYCLE
	487	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	488	s_r2 = 0.0_wp
	489	s_r3 = 0.0_wp
	490	DO n = 1, number_of_particles
	491	IF ( particles(n)%particle_mask ) THEN
	492	s_r2 = s_r2 + particles(n)%radius*2 &
	493	particles(n)%weight_factor
	494	s_r3 = s_r3 + particles(n)%radius*3 &
	495	particles(n)%weight_factor
	496	ENDIF
	497	ENDDO
	498	IF ( s_r2 > 0.0_wp ) THEN
	499	mean_r = s_r3 / s_r2
	500	ELSE
	501	mean_r = 0.0_wp
	502	ENDIF
	503	tend(k,j,i) = mean_r
[1]	504	ENDDO
	505	ENDDO
	506	ENDDO
[1359]	507	ELSE
	508	tend = 0.0_wp
	509	ENDIF
[2512]	510	DO i = nxl, nxr
	511	DO j = nys, nyn
[1551]	512	DO k = nzb_do, nzt_do
[1]	513	local_pf(i,j,k) = tend(k,j,i)
	514	ENDDO
	515	ENDDO
	516	ENDDO
	517	resorted = .TRUE.
	518	ELSE
[3004]	519	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	520	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	521	pr_av = REAL( fill_value, KIND = wp )
	522	ENDIF
[1]	523	to_be_resorted => pr_av
	524	ENDIF
	525
[3421]	526	CASE ( 'theta' )
[1]	527	IF ( av == 0 ) THEN
[3274]	528	IF ( .NOT. bulk_cloud_model ) THEN
[1]	529	to_be_resorted => pt
	530	ELSE
[2512]	531	DO i = nxl, nxr
	532	DO j = nys, nyn
[1551]	533	DO k = nzb_do, nzt_do
[3274]	534	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	535	d_exner(k) * &
[1]	536	ql(k,j,i)
	537	ENDDO
	538	ENDDO
	539	ENDDO
	540	resorted = .TRUE.
	541	ENDIF
	542	ELSE
[3004]	543	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	544	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	545	pt_av = REAL( fill_value, KIND = wp )
	546	ENDIF
[1]	547	to_be_resorted => pt_av
	548	ENDIF
	549
	550	CASE ( 'q' )
	551	IF ( av == 0 ) THEN
	552	to_be_resorted => q
	553	ELSE
[3004]	554	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	555	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	556	q_av = REAL( fill_value, KIND = wp )
	557	ENDIF
[1]	558	to_be_resorted => q_av
	559	ENDIF
[691]	560
[1053]	561	CASE ( 'ql' )
	562	IF ( av == 0 ) THEN
[1115]	563	to_be_resorted => ql
[1053]	564	ELSE
[3004]	565	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	566	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	567	ql_av = REAL( fill_value, KIND = wp )
	568	ENDIF
[1115]	569	to_be_resorted => ql_av
[1053]	570	ENDIF
	571
[1]	572	CASE ( 'ql_c' )
	573	IF ( av == 0 ) THEN
	574	to_be_resorted => ql_c
	575	ELSE
[3004]	576	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	577	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	578	ql_c_av = REAL( fill_value, KIND = wp )
	579	ENDIF
[1]	580	to_be_resorted => ql_c_av
	581	ENDIF
	582
	583	CASE ( 'ql_v' )
	584	IF ( av == 0 ) THEN
	585	to_be_resorted => ql_v
	586	ELSE
[3004]	587	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	588	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	589	ql_v_av = REAL( fill_value, KIND = wp )
	590	ENDIF
[1]	591	to_be_resorted => ql_v_av
	592	ENDIF
	593
	594	CASE ( 'ql_vp' )
	595	IF ( av == 0 ) THEN
[1359]	596	IF ( simulated_time >= particle_advection_start ) THEN
	597	DO i = nxl, nxr
	598	DO j = nys, nyn
[1551]	599	DO k = nzb_do, nzt_do
[1359]	600	number_of_particles = prt_count(k,j,i)
	601	IF (number_of_particles <= 0) CYCLE
	602	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	603	DO n = 1, number_of_particles
	604	IF ( particles(n)%particle_mask ) THEN
	605	tend(k,j,i) = tend(k,j,i) + &
	606	particles(n)%weight_factor / &
	607	prt_count(k,j,i)
	608	ENDIF
	609	ENDDO
[1007]	610	ENDDO
	611	ENDDO
	612	ENDDO
[1359]	613	ELSE
	614	tend = 0.0_wp
	615	ENDIF
[2512]	616	DO i = nxl, nxr
	617	DO j = nys, nyn
[1551]	618	DO k = nzb_do, nzt_do
[1007]	619	local_pf(i,j,k) = tend(k,j,i)
	620	ENDDO
	621	ENDDO
	622	ENDDO
	623	resorted = .TRUE.
[1]	624	ELSE
[3004]	625	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	626	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	627	ql_vp_av = REAL( fill_value, KIND = wp )
	628	ENDIF
[1]	629	to_be_resorted => ql_vp_av
	630	ENDIF
	631
	632	CASE ( 'qv' )
	633	IF ( av == 0 ) THEN
[2512]	634	DO i = nxl, nxr
	635	DO j = nys, nyn
[1551]	636	DO k = nzb_do, nzt_do
[1]	637	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	638	ENDDO
	639	ENDDO
	640	ENDDO
	641	resorted = .TRUE.
	642	ELSE
[3004]	643	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	644	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	645	qv_av = REAL( fill_value, KIND = wp )
	646	ENDIF
[1]	647	to_be_resorted => qv_av
	648	ENDIF
	649
	650	CASE ( 's' )
	651	IF ( av == 0 ) THEN
[1960]	652	to_be_resorted => s
[1]	653	ELSE
[3004]	654	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	655	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	656	s_av = REAL( fill_value, KIND = wp )
	657	ENDIF
[355]	658	to_be_resorted => s_av
[1]	659	ENDIF
[691]	660
[1]	661	CASE ( 'u' )
[2696]	662	flag_nr = 1
[1]	663	IF ( av == 0 ) THEN
	664	to_be_resorted => u
	665	ELSE
[3004]	666	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	667	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	668	u_av = REAL( fill_value, KIND = wp )
	669	ENDIF
[1]	670	to_be_resorted => u_av
	671	ENDIF
	672
	673	CASE ( 'v' )
[2696]	674	flag_nr = 2
[1]	675	IF ( av == 0 ) THEN
	676	to_be_resorted => v
	677	ELSE
[3004]	678	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	679	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	680	v_av = REAL( fill_value, KIND = wp )
	681	ENDIF
[1]	682	to_be_resorted => v_av
	683	ENDIF
	684
[3421]	685	CASE ( 'thetav' )
[1]	686	IF ( av == 0 ) THEN
	687	to_be_resorted => vpt
	688	ELSE
[3004]	689	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	690	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	691	vpt_av = REAL( fill_value, KIND = wp )
	692	ENDIF
[1]	693	to_be_resorted => vpt_av
	694	ENDIF
	695
	696	CASE ( 'w' )
[2696]	697	flag_nr = 3
[1]	698	IF ( av == 0 ) THEN
	699	to_be_resorted => w
	700	ELSE
[3004]	701	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	702	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	703	w_av = REAL( fill_value, KIND = wp )
	704	ENDIF
[1]	705	to_be_resorted => w_av
	706	ENDIF
[2007]	707	!
	708	!-- Block of urban surface model outputs
	709	CASE ( 'usm_output' )
[3274]	710	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	711	nzb_do, nzt_do )
[1]	712
	713	CASE DEFAULT
[1972]	714
[1]	715	!
[3294]	716	!-- Quantities of other modules
[3274]	717	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	718	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	719	nzb_do, nzt_do )
	720	resorted = .TRUE.
	721	ENDIF
	722
[3294]	723	IF ( .NOT. found .AND. air_chemistry ) THEN
	724	CALL chem_data_output_3d( av, do3d(av,if), found, &
	725	local_pf, fill_value, nzb_do, nzt_do )
	726	resorted = .TRUE.
	727	ENDIF
	728
	729	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	730	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	731	nzb_do, nzt_do )
	732	resorted = .TRUE.
	733	ENDIF
	734
[3274]	735	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	736	!
	737	!-- For soil model quantities, it is required to re-allocate local_pf
	738	nzb_do = nzb_soil
	739	nzt_do = nzt_soil
	740
	741	DEALLOCATE ( local_pf )
[2512]	742	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	743	local_pf = fill_value
[1972]	744
	745	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	746	resorted = .TRUE.
[1976]	747
	748	!
	749	!-- If no soil model variable was found, re-allocate local_pf
	750	IF ( .NOT. found ) THEN
	751	nzb_do = nzb
	752	nzt_do = nz_do3d
	753
	754	DEALLOCATE ( local_pf )
[2512]	755	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	756	ENDIF
	757
[1972]	758	ENDIF
	759
[3294]	760	IF ( .NOT. found .AND. ocean_mode ) THEN
	761	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	762	nzb_do, nzt_do )
[1976]	763	resorted = .TRUE.
	764	ENDIF
	765
[3294]	766	IF ( .NOT. found .AND. plant_canopy ) THEN
	767	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	768	fill_value, nzb_do, nzt_do )
[2817]	769	resorted = .TRUE.
	770	ENDIF
	771
[3294]	772	IF ( .NOT. found .AND. radiation ) THEN
	773	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	774	local_pf, nzb_do, nzt_do )
[2696]	775	resorted = .TRUE.
	776	ENDIF
	777
[3294]	778	IF ( .NOT. found ) THEN
	779	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	780	nzb_do, nzt_do )
[2209]	781	resorted = .TRUE.
	782	ENDIF
[3467]	783
	784	!
	785	!-- SALSA output
	786	IF ( .NOT. found .AND. salsa ) THEN
	787	CALL salsa_data_output_3d( av, do3d(av,if), found, local_pf )
	788	resorted = .TRUE.
	789	ENDIF
[2209]	790
[3448]	791	IF ( .NOT. found .AND. biometeorology ) THEN
	792	CALL biom_data_output_3d( av, do3d(av,if), found, local_pf, &
	793	nzb_do, nzt_do )
	794	ENDIF
	795
[2209]	796	!
[3294]	797	!-- User defined quantities
[1972]	798	IF ( .NOT. found ) THEN
	799	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	800	nzb_do, nzt_do )
	801	resorted = .TRUE.
	802	ENDIF
[1]	803
[254]	804	IF ( .NOT. found ) THEN
[1320]	805	message_string = 'no output available for: ' // &
[274]	806	TRIM( do3d(av,if) )
[254]	807	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	808	ENDIF
	809
	810	END SELECT
	811
	812	!
	813	!-- Resort the array to be output, if not done above
	814	IF ( .NOT. resorted ) THEN
[2512]	815	DO i = nxl, nxr
	816	DO j = nys, nyn
[1551]	817	DO k = nzb_do, nzt_do
[2696]	818	local_pf(i,j,k) = MERGE( &
	819	to_be_resorted(k,j,i), &
	820	REAL( fill_value, KIND = wp ), &
	821	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	822	ENDDO
	823	ENDDO
	824	ENDDO
	825	ENDIF
	826
	827	!
[1327]	828	!-- Output of the 3D-array
	829	#if defined( __parallel )
	830	IF ( netcdf_data_format < 5 ) THEN
[1]	831	!
[1327]	832	!-- Non-parallel netCDF output. Data is output in parallel in
	833	!-- FORTRAN binary format here, and later collected into one file by
	834	!-- combine_plot_fields
	835	IF ( myid == 0 ) THEN
	836	WRITE ( 30 ) time_since_reference_point, &
	837	do3d_time_count(av), av
[1]	838	ENDIF
[1327]	839	DO i = 0, io_blocks-1
	840	IF ( i == io_group ) THEN
[2512]	841	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	842	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	843	ENDIF
[1972]	844
[1327]	845	CALL MPI_BARRIER( comm2d, ierr )
[1972]	846
[1327]	847	ENDDO
[559]	848
[1327]	849	ELSE
[646]	850	#if defined( __netcdf )
[493]	851	!
[1327]	852	!-- Parallel output in netCDF4/HDF5 format.
[2512]	853	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	854	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	855	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	856	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	857	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	858	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	859	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	860	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	861	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	862	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	863	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	864	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	865	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	866	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	867	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	868	! ELSE
[1327]	869	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	870	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	871	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	872	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	873	! ENDIF
[1783]	874	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	875	#endif
[1327]	876	ENDIF
[1]	877	#else
	878	#if defined( __netcdf )
[1327]	879	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	880	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	881	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	882	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	883	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	884	#endif
	885	#endif
	886
	887	if = if + 1
	888
	889	!
[1551]	890	!-- Deallocate temporary array
	891	DEALLOCATE ( local_pf )
[1]	892
[1551]	893	ENDDO
[1]	894
[1318]	895	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	896
	897	END SUBROUTINE data_output_3d

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